AutoCloner

Multiple sequence alignment - TraesCS3D01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G296000	chr3D	100.000	3557	0	0	1	3557	409023118	409019562	0.000000e+00	6569
1	TraesCS3D01G296000	chr3D	81.700	694	119	7	1121	1810	95246491	95245802	3.980000e-159	571
2	TraesCS3D01G296000	chr3B	92.136	2645	133	33	4	2604	534966594	534963981	0.000000e+00	3663
3	TraesCS3D01G296000	chr3B	81.034	696	122	9	1120	1810	146183121	146182431	2.410000e-151	545
4	TraesCS3D01G296000	chr3B	95.436	241	7	3	3312	3551	534963402	534963165	7.210000e-102	381
5	TraesCS3D01G296000	chr3B	97.685	216	5	0	2613	2828	534963762	534963547	4.340000e-99	372
6	TraesCS3D01G296000	chr3B	73.476	656	158	16	1124	1771	169628705	169629352	2.140000e-57	233
7	TraesCS3D01G296000	chr3B	94.068	118	5	1	2806	2923	534963513	534963398	1.010000e-40	178
8	TraesCS3D01G296000	chr3A	92.002	2638	140	35	1	2604	542201657	542204257	0.000000e+00	3637
9	TraesCS3D01G296000	chr3A	96.774	217	7	0	2612	2828	542204473	542204689	2.610000e-96	363
10	TraesCS3D01G296000	chr3A	91.057	246	14	4	3312	3551	542204840	542205083	3.420000e-85	326
11	TraesCS3D01G296000	chr3A	72.824	655	164	14	1124	1771	112957467	112958114	1.000000e-50	211
12	TraesCS3D01G296000	chr1B	80.862	1416	243	22	1116	2517	576205530	576206931	0.000000e+00	1088
13	TraesCS3D01G296000	chr1A	80.810	1407	232	31	1130	2517	521629162	521630549	0.000000e+00	1068
14	TraesCS3D01G296000	chr1A	94.737	380	18	2	2935	3313	143816925	143817303	1.100000e-164	590
15	TraesCS3D01G296000	chr1D	80.507	1421	239	31	1116	2517	426586983	426588384	0.000000e+00	1055
16	TraesCS3D01G296000	chr1D	94.709	378	19	1	2930	3307	28576681	28577057	1.420000e-163	586
17	TraesCS3D01G296000	chr7D	96.010	401	14	2	2912	3312	223842106	223841708	0.000000e+00	651
18	TraesCS3D01G296000	chr4A	95.263	380	17	1	2930	3309	608148707	608148329	5.080000e-168	601
19	TraesCS3D01G296000	chr5D	94.960	377	17	2	2933	3308	510914097	510913722	1.100000e-164	590
20	TraesCS3D01G296000	chr2D	94.211	380	21	1	2930	3309	177868121	177867743	2.380000e-161	579
21	TraesCS3D01G296000	chr2D	94.211	380	20	2	2930	3309	476966491	476966114	2.380000e-161	579
22	TraesCS3D01G296000	chr2D	94.211	380	19	3	2930	3309	476964595	476964219	8.560000e-161	577
23	TraesCS3D01G296000	chr2D	94.211	380	19	3	2930	3309	476967438	476967062	8.560000e-161	577

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G296000	chr3D	409019562	409023118	3556	True	6569.000000	6569	100.000000	1	3557	1	chr3D.!!$R2	3556
1	TraesCS3D01G296000	chr3D	95245802	95246491	689	True	571.000000	571	81.700000	1121	1810	1	chr3D.!!$R1	689
2	TraesCS3D01G296000	chr3B	534963165	534966594	3429	True	1148.500000	3663	94.831250	4	3551	4	chr3B.!!$R2	3547
3	TraesCS3D01G296000	chr3B	146182431	146183121	690	True	545.000000	545	81.034000	1120	1810	1	chr3B.!!$R1	690
4	TraesCS3D01G296000	chr3B	169628705	169629352	647	False	233.000000	233	73.476000	1124	1771	1	chr3B.!!$F1	647
5	TraesCS3D01G296000	chr3A	542201657	542205083	3426	False	1442.000000	3637	93.277667	1	3551	3	chr3A.!!$F2	3550
6	TraesCS3D01G296000	chr3A	112957467	112958114	647	False	211.000000	211	72.824000	1124	1771	1	chr3A.!!$F1	647
7	TraesCS3D01G296000	chr1B	576205530	576206931	1401	False	1088.000000	1088	80.862000	1116	2517	1	chr1B.!!$F1	1401
8	TraesCS3D01G296000	chr1A	521629162	521630549	1387	False	1068.000000	1068	80.810000	1130	2517	1	chr1A.!!$F2	1387
9	TraesCS3D01G296000	chr1D	426586983	426588384	1401	False	1055.000000	1055	80.507000	1116	2517	1	chr1D.!!$F2	1401
10	TraesCS3D01G296000	chr2D	476964219	476967438	3219	True	577.666667	579	94.211000	2930	3309	3	chr2D.!!$R2	379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
962	1044	0.623324	CCACCTCCACCTAATCCCCA	60.623	60.0	0.0	0.0	0.0	4.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2922	3343	0.101399	AAAACACCGCGTCAAATGCA	59.899	45.0	4.92	0.0	0.0	3.96	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	8.295288	CACTTGCTTTTATGAATTCTTCTGACT	58.705	33.333	7.05	0.00	0.00	3.41
28	29	8.854117	ACTTGCTTTTATGAATTCTTCTGACTT	58.146	29.630	7.05	0.00	0.00	3.01
29	30	9.125906	CTTGCTTTTATGAATTCTTCTGACTTG	57.874	33.333	7.05	0.00	0.00	3.16
76	77	5.831702	TTTAGAAGGAGAGTAGCTAACGG	57.168	43.478	0.00	0.00	0.00	4.44
96	97	3.927758	CGGTACAAATTGTATCCACGACA	59.072	43.478	9.22	0.00	35.05	4.35
106	108	6.429791	TTGTATCCACGACAAAACCATATG	57.570	37.500	0.00	0.00	33.93	1.78
115	117	5.533154	ACGACAAAACCATATGGAGAACAAA	59.467	36.000	28.77	0.00	38.94	2.83
120	122	7.710475	ACAAAACCATATGGAGAACAAAAAGTG	59.290	33.333	28.77	10.94	38.94	3.16
166	168	7.885399	ACATCTATAACTTTTTGAGAGTTGCCT	59.115	33.333	0.09	0.00	37.84	4.75
191	193	6.979817	TGATCAAACATTTTGAACACCTTCTG	59.020	34.615	5.49	0.00	31.55	3.02
220	222	8.450578	AGAACTCAATCAGAATTACAACAACA	57.549	30.769	0.00	0.00	0.00	3.33
230	232	6.912591	CAGAATTACAACAACACAAAGACTCC	59.087	38.462	0.00	0.00	0.00	3.85
243	245	3.832615	AAGACTCCTTGTTAACACCGT	57.167	42.857	8.07	3.00	0.00	4.83
293	295	5.352569	ACTTGTCTTGAAATAGATCTTGGCG	59.647	40.000	0.00	0.00	0.00	5.69
294	296	3.623060	TGTCTTGAAATAGATCTTGGCGC	59.377	43.478	0.00	0.00	0.00	6.53
302	304	1.090052	AGATCTTGGCGCGGCTTTAC	61.090	55.000	33.23	19.27	0.00	2.01
332	334	3.863400	GCAACCACCACGTCTATACAAGT	60.863	47.826	0.00	0.00	0.00	3.16
367	372	6.480981	GCAGTAAAGTTAATATAAGGTCGGCA	59.519	38.462	0.00	0.00	0.00	5.69
370	376	5.881923	AAGTTAATATAAGGTCGGCAGGA	57.118	39.130	0.00	0.00	0.00	3.86
378	384	2.556287	GTCGGCAGGACAAAAGCG	59.444	61.111	2.57	0.00	45.36	4.68
379	385	2.110213	TCGGCAGGACAAAAGCGT	59.890	55.556	0.00	0.00	0.00	5.07
389	395	3.117794	GGACAAAAGCGTAAACAAACCC	58.882	45.455	0.00	0.00	0.00	4.11
406	413	8.637281	AACAAACCCAAAAGTAAAGAAATACG	57.363	30.769	0.00	0.00	0.00	3.06
430	439	6.220726	ACTCTTATTTGGAGAGAGAAGCTC	57.779	41.667	8.03	0.00	42.57	4.09
493	533	3.510753	TGTCAATTTCATCCCCACATGTG	59.489	43.478	19.31	19.31	0.00	3.21
502	542	2.794103	TCCCCACATGTGAATTGTGAG	58.206	47.619	27.46	7.42	45.83	3.51
525	565	9.567776	TGAGTGACTCCAGTGAAATAATAAAAA	57.432	29.630	10.52	0.00	0.00	1.94
544	584	6.897259	AAAAATGCTGCTTATAATGCACTG	57.103	33.333	0.00	2.62	38.29	3.66
560	600	1.677576	CACTGCTCAAAGAGTTTGCCA	59.322	47.619	0.00	0.00	40.43	4.92
561	601	2.099592	CACTGCTCAAAGAGTTTGCCAA	59.900	45.455	0.00	0.00	40.43	4.52
569	609	7.498570	TGCTCAAAGAGTTTGCCAAAATAAAAT	59.501	29.630	0.00	0.00	40.43	1.82
736	794	1.340657	GCTGTGCACGAAGAGACTCG	61.341	60.000	13.13	0.00	44.50	4.18
742	800	1.332178	CACGAAGAGACTCGAGCAAC	58.668	55.000	13.61	4.49	41.44	4.17
788	846	9.921637	AGAAATAAAAATACAAAATTGCGAGGA	57.078	25.926	0.00	0.00	0.00	3.71
790	848	9.921637	AAATAAAAATACAAAATTGCGAGGAGA	57.078	25.926	0.00	0.00	0.00	3.71
819	877	1.772819	ATATCTGCCCTCCCAAGCCG	61.773	60.000	0.00	0.00	0.00	5.52
848	911	2.751436	CCAACCATGCTCCACGGG	60.751	66.667	0.00	0.00	0.00	5.28
876	939	3.306225	GCCATAGAGAAGATGGAGAGCAG	60.306	52.174	5.84	0.00	45.89	4.24
962	1044	0.623324	CCACCTCCACCTAATCCCCA	60.623	60.000	0.00	0.00	0.00	4.96
1082	1176	4.824515	CTCCTCCTCCTCGGCGGT	62.825	72.222	7.21	0.00	38.85	5.68
1825	1919	3.759815	TCTCCAAGGACCTTACTAGCT	57.240	47.619	6.38	0.00	0.00	3.32
1938	2032	6.995091	GGCCAGTCAAGTTCTATATTGAAGAT	59.005	38.462	0.00	0.00	37.19	2.40
1959	2053	2.224185	TGACCAGCTGTACAACGTCATT	60.224	45.455	13.81	0.00	0.00	2.57
2018	2130	1.005215	CCCTCTTCCTCAACCATTGCT	59.995	52.381	0.00	0.00	0.00	3.91
2019	2131	2.556114	CCCTCTTCCTCAACCATTGCTT	60.556	50.000	0.00	0.00	0.00	3.91
2029	2141	0.779997	ACCATTGCTTCCTCCACCTT	59.220	50.000	0.00	0.00	0.00	3.50
2043	2155	1.069823	CCACCTTCATCTCCATCTCCG	59.930	57.143	0.00	0.00	0.00	4.63
2270	2382	1.065701	CTCGAGTGAACCTATGTCGGG	59.934	57.143	3.62	0.00	0.00	5.14
2286	2398	7.332430	CCTATGTCGGGCATTATAACGAAATTA	59.668	37.037	0.00	0.00	38.94	1.40
2522	2634	0.454600	CATCTTGTGCACCAGATGGC	59.545	55.000	36.30	6.40	39.32	4.40
2534	2646	0.032813	CAGATGGCCCCAGTTCCAAT	60.033	55.000	0.00	0.00	35.75	3.16
2604	2717	4.734695	GCTTTTTCTCTTGTGTTGGAGGTG	60.735	45.833	0.00	0.00	0.00	4.00
2605	2718	3.644966	TTTCTCTTGTGTTGGAGGTGT	57.355	42.857	0.00	0.00	0.00	4.16
2606	2719	3.644966	TTCTCTTGTGTTGGAGGTGTT	57.355	42.857	0.00	0.00	0.00	3.32
2608	2721	3.541632	TCTCTTGTGTTGGAGGTGTTTC	58.458	45.455	0.00	0.00	0.00	2.78
2611	2724	4.340617	TCTTGTGTTGGAGGTGTTTCTTT	58.659	39.130	0.00	0.00	0.00	2.52
2618	2977	4.911514	TGGAGGTGTTTCTTTTGCTAAC	57.088	40.909	0.00	0.00	0.00	2.34
2918	3339	6.479972	TCGAGAGAGAGAGAGAATAGTTCT	57.520	41.667	0.00	0.00	38.05	3.01
2919	3340	6.280643	TCGAGAGAGAGAGAGAATAGTTCTG	58.719	44.000	0.00	0.00	36.32	3.02
2920	3341	5.050091	CGAGAGAGAGAGAGAATAGTTCTGC	60.050	48.000	0.00	0.00	40.87	4.26
2921	3342	5.754782	AGAGAGAGAGAGAATAGTTCTGCA	58.245	41.667	0.00	0.00	40.87	4.41
2922	3343	6.367983	AGAGAGAGAGAGAATAGTTCTGCAT	58.632	40.000	0.00	0.00	40.87	3.96
2923	3344	6.263842	AGAGAGAGAGAGAATAGTTCTGCATG	59.736	42.308	0.00	0.00	40.87	4.06
2924	3345	4.947645	AGAGAGAGAATAGTTCTGCATGC	58.052	43.478	11.82	11.82	40.87	4.06
2925	3346	4.405036	AGAGAGAGAATAGTTCTGCATGCA	59.595	41.667	21.29	21.29	40.87	3.96
2926	3347	5.070714	AGAGAGAGAATAGTTCTGCATGCAT	59.929	40.000	22.97	9.00	40.87	3.96
2927	3348	5.682659	AGAGAGAATAGTTCTGCATGCATT	58.317	37.500	22.97	11.55	40.87	3.56
2928	3349	6.120905	AGAGAGAATAGTTCTGCATGCATTT	58.879	36.000	22.97	9.54	40.87	2.32
2960	3381	0.397941	TGGCTCCTAGGTGCATATGC	59.602	55.000	31.19	21.09	42.50	3.14
3038	3459	4.367386	CGGGTATATCCGGACATTCTAC	57.633	50.000	17.10	4.26	45.78	2.59
3041	3462	4.380233	GGGTATATCCGGACATTCTACGTG	60.380	50.000	6.12	0.00	37.00	4.49
3070	4437	2.724744	AGTTTCGGTGAAAAACGACG	57.275	45.000	0.00	0.00	40.67	5.12
3137	5452	9.399797	TGAATAGTTGTAATGAAGCATCAGAAT	57.600	29.630	0.00	0.00	39.39	2.40
3210	5525	1.338579	TGCACGCACATAGAATGTCCA	60.339	47.619	0.00	0.00	42.70	4.02
3231	5546	4.319477	CCAGATATACACGCGGGATTTTTG	60.319	45.833	19.19	1.15	0.00	2.44
3234	5549	3.926821	ATACACGCGGGATTTTTGTTT	57.073	38.095	19.19	0.00	0.00	2.83
3242	5557	4.376920	CGCGGGATTTTTGTTTGGAATTTC	60.377	41.667	0.00	0.00	0.00	2.17
3300	5615	3.341823	CATATGCACCTAGGAGCCATTC	58.658	50.000	25.94	1.56	0.00	2.67
3404	6344	9.923786	TTTCGTGGATGTATATTTTTCATTACG	57.076	29.630	0.00	0.00	35.71	3.18
3552	6522	1.270550	GCTGGAACCACACTTCAATGG	59.729	52.381	0.00	0.00	42.13	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	58	3.369242	ACCGTTAGCTACTCTCCTTCT	57.631	47.619	0.00	0.00	0.00	2.85
96	97	6.705825	GCACTTTTTGTTCTCCATATGGTTTT	59.294	34.615	21.28	0.00	36.34	2.43
106	108	2.716398	GACGTGCACTTTTTGTTCTCC	58.284	47.619	16.19	0.00	0.00	3.71
115	117	1.373590	AAGTTGCCGACGTGCACTTT	61.374	50.000	16.19	0.64	41.88	2.66
120	122	0.793861	TAATCAAGTTGCCGACGTGC	59.206	50.000	0.00	0.00	37.61	5.34
166	168	6.979817	CAGAAGGTGTTCAAAATGTTTGATCA	59.020	34.615	9.37	9.37	34.82	2.92
191	193	9.383519	TGTTGTAATTCTGATTGAGTTCTATCC	57.616	33.333	2.03	0.00	0.00	2.59
212	214	4.079253	ACAAGGAGTCTTTGTGTTGTTGT	58.921	39.130	18.86	0.00	0.00	3.32
220	222	3.875134	CGGTGTTAACAAGGAGTCTTTGT	59.125	43.478	14.43	14.43	0.00	2.83
230	232	6.109320	TGAAGTGTTTACGGTGTTAACAAG	57.891	37.500	10.51	10.14	36.94	3.16
273	275	3.302740	CGCGCCAAGATCTATTTCAAGAC	60.303	47.826	0.00	0.00	0.00	3.01
287	289	0.109319	ATTTGTAAAGCCGCGCCAAG	60.109	50.000	0.00	0.00	0.00	3.61
290	292	2.182014	CTTTATTTGTAAAGCCGCGCC	58.818	47.619	0.00	0.00	31.33	6.53
302	304	3.004315	AGACGTGGTGGTTGCTTTATTTG	59.996	43.478	0.00	0.00	0.00	2.32
315	317	5.106442	TGCATTACTTGTATAGACGTGGTG	58.894	41.667	0.00	0.00	0.00	4.17
345	347	7.170489	GTCCTGCCGACCTTATATTAACTTTAC	59.830	40.741	0.00	0.00	35.23	2.01
364	369	1.335496	TGTTTACGCTTTTGTCCTGCC	59.665	47.619	0.00	0.00	0.00	4.85
367	372	3.181484	GGGTTTGTTTACGCTTTTGTCCT	60.181	43.478	0.00	0.00	0.00	3.85
370	376	3.870633	TGGGTTTGTTTACGCTTTTGT	57.129	38.095	0.00	0.00	32.66	2.83
406	413	6.220726	AGCTTCTCTCTCCAAATAAGAGTC	57.779	41.667	0.51	0.00	40.92	3.36
430	439	2.973224	GCAGTGTTACAATTTGCTCACG	59.027	45.455	9.48	2.81	0.00	4.35
453	462	3.182967	GACAACATACTCTCAAGGCTCG	58.817	50.000	0.00	0.00	0.00	5.03
493	533	3.995199	TCACTGGAGTCACTCACAATTC	58.005	45.455	7.24	0.00	31.08	2.17
502	542	9.076596	GCATTTTTATTATTTCACTGGAGTCAC	57.923	33.333	0.00	0.00	0.00	3.67
525	565	3.220110	AGCAGTGCATTATAAGCAGCAT	58.780	40.909	19.20	0.00	43.63	3.79
544	584	6.843069	TTTATTTTGGCAAACTCTTTGAGC	57.157	33.333	13.10	0.00	43.26	4.26
560	600	7.419203	AGCTCCAGGGGTAGTAATTTTATTTT	58.581	34.615	0.00	0.00	0.00	1.82
561	601	6.981737	AGCTCCAGGGGTAGTAATTTTATTT	58.018	36.000	0.00	0.00	0.00	1.40
569	609	3.200958	AGAAAGCTCCAGGGGTAGTAA	57.799	47.619	0.00	0.00	0.00	2.24
697	744	2.732282	GCTTTTGTGCCCTATTTCGAGC	60.732	50.000	0.00	0.00	0.00	5.03
736	794	2.481276	GGTTTGTTTCACCCAGTTGCTC	60.481	50.000	0.00	0.00	0.00	4.26
762	820	9.921637	TCCTCGCAATTTTGTATTTTTATTTCT	57.078	25.926	0.00	0.00	0.00	2.52
764	822	9.921637	TCTCCTCGCAATTTTGTATTTTTATTT	57.078	25.926	0.00	0.00	0.00	1.40
828	891	3.443045	GTGGAGCATGGTTGGGCG	61.443	66.667	0.00	0.00	34.54	6.13
866	929	0.610174	TCGTTTGCTCTGCTCTCCAT	59.390	50.000	0.00	0.00	0.00	3.41
867	930	0.037882	CTCGTTTGCTCTGCTCTCCA	60.038	55.000	0.00	0.00	0.00	3.86
876	939	4.549980	GCGAAAACTATTTCTCGTTTGCTC	59.450	41.667	0.00	0.00	42.29	4.26
1825	1919	4.036144	TGTGTCAAGAAAACGCATGATCAA	59.964	37.500	0.00	0.00	32.50	2.57
1938	2032	0.747852	TGACGTTGTACAGCTGGTCA	59.252	50.000	19.93	16.87	32.51	4.02
1959	2053	3.593096	GAGCATATCATTCTCGGCATCA	58.407	45.455	0.00	0.00	0.00	3.07
2018	2130	2.342406	TGGAGATGAAGGTGGAGGAA	57.658	50.000	0.00	0.00	0.00	3.36
2019	2131	2.022625	AGATGGAGATGAAGGTGGAGGA	60.023	50.000	0.00	0.00	0.00	3.71
2029	2141	1.780503	TCTTGCGGAGATGGAGATGA	58.219	50.000	0.00	0.00	0.00	2.92
2043	2155	4.260170	AGTCATCTCCATCAACTTCTTGC	58.740	43.478	0.00	0.00	0.00	4.01
2270	2382	8.587950	CGATCTCCTCTAATTTCGTTATAATGC	58.412	37.037	0.00	0.00	0.00	3.56
2286	2398	3.196469	TCTTCACATTTGCGATCTCCTCT	59.804	43.478	0.00	0.00	0.00	3.69
2522	2634	2.899303	AGGTGTAATTGGAACTGGGG	57.101	50.000	0.00	0.00	0.00	4.96
2534	2646	6.540438	CCTACTCAGAAATGGTAGGTGTAA	57.460	41.667	9.46	0.00	44.30	2.41
2833	3248	6.577103	TGTAATCATTTCAACAGCCACAAAA	58.423	32.000	0.00	0.00	0.00	2.44
2905	3326	6.037940	TCAAATGCATGCAGAACTATTCTCTC	59.962	38.462	26.69	0.00	38.11	3.20
2910	3331	4.665212	CGTCAAATGCATGCAGAACTATT	58.335	39.130	26.69	11.37	0.00	1.73
2912	3333	2.159531	GCGTCAAATGCATGCAGAACTA	60.160	45.455	26.69	7.46	0.00	2.24
2913	3334	1.401931	GCGTCAAATGCATGCAGAACT	60.402	47.619	26.69	6.06	0.00	3.01
2914	3335	0.986992	GCGTCAAATGCATGCAGAAC	59.013	50.000	26.69	18.11	0.00	3.01
2915	3336	0.454789	CGCGTCAAATGCATGCAGAA	60.455	50.000	26.69	8.21	0.00	3.02
2916	3337	1.135108	CGCGTCAAATGCATGCAGA	59.865	52.632	26.69	15.13	0.00	4.26
2917	3338	1.870458	CCGCGTCAAATGCATGCAG	60.870	57.895	26.69	12.83	0.00	4.41
2918	3339	2.178769	CCGCGTCAAATGCATGCA	59.821	55.556	25.04	25.04	0.00	3.96
2919	3340	2.153945	CACCGCGTCAAATGCATGC	61.154	57.895	11.82	11.82	0.00	4.06
2920	3341	0.387112	AACACCGCGTCAAATGCATG	60.387	50.000	4.92	0.00	0.00	4.06
2921	3342	0.313672	AAACACCGCGTCAAATGCAT	59.686	45.000	4.92	0.00	0.00	3.96
2922	3343	0.101399	AAAACACCGCGTCAAATGCA	59.899	45.000	4.92	0.00	0.00	3.96
2923	3344	0.502275	CAAAACACCGCGTCAAATGC	59.498	50.000	4.92	0.00	0.00	3.56
2924	3345	1.127701	CCAAAACACCGCGTCAAATG	58.872	50.000	4.92	0.00	0.00	2.32
2925	3346	0.596341	GCCAAAACACCGCGTCAAAT	60.596	50.000	4.92	0.00	0.00	2.32
2926	3347	1.226717	GCCAAAACACCGCGTCAAA	60.227	52.632	4.92	0.00	0.00	2.69
2927	3348	2.054140	GAGCCAAAACACCGCGTCAA	62.054	55.000	4.92	0.00	0.00	3.18
2928	3349	2.515057	AGCCAAAACACCGCGTCA	60.515	55.556	4.92	0.00	0.00	4.35
2990	3411	8.134261	CGGGATTTTTGTTCCAAATTTTTCAAT	58.866	29.630	0.00	0.00	34.77	2.57
2993	3414	5.912396	GCGGGATTTTTGTTCCAAATTTTTC	59.088	36.000	0.00	0.00	34.77	2.29
3001	3422	1.528292	CCCGCGGGATTTTTGTTCCA	61.528	55.000	41.82	0.00	37.50	3.53
3041	3462	1.130955	CACCGAAACTTTGTGCATGC	58.869	50.000	11.82	11.82	0.00	4.06
3207	5522	1.919240	ATCCCGCGTGTATATCTGGA	58.081	50.000	4.92	0.64	0.00	3.86
3210	5525	4.448210	ACAAAAATCCCGCGTGTATATCT	58.552	39.130	4.92	0.00	0.00	1.98
3234	5549	9.447157	ACATTTTGAAAAGTTGAAGAAATTCCA	57.553	25.926	0.00	0.00	0.00	3.53
3300	5615	2.493278	AGAGAAATGCACCGAAATTGGG	59.507	45.455	0.00	0.00	0.00	4.12
3303	5618	5.957842	TTGTAGAGAAATGCACCGAAATT	57.042	34.783	0.00	0.00	0.00	1.82
3309	5624	4.022849	ACAAGCTTTGTAGAGAAATGCACC	60.023	41.667	0.00	0.00	43.27	5.01
3404	6344	5.163561	CCTCTGATTCTCCACTCTACTTCAC	60.164	48.000	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.