Multiple sequence alignment - TraesCS3D01G295800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G295800 chr3D 100.000 2879 0 0 1 2879 408654873 408657751 0.000000e+00 5317.0
1 TraesCS3D01G295800 chr3B 90.904 1836 81 27 751 2572 534515770 534517533 0.000000e+00 2386.0
2 TraesCS3D01G295800 chr3B 88.360 189 9 3 464 639 534515122 534515310 6.250000e-52 215.0
3 TraesCS3D01G295800 chr3B 96.063 127 3 2 626 750 534515325 534515451 3.760000e-49 206.0
4 TraesCS3D01G295800 chr3B 84.444 135 13 6 286 412 51905642 51905508 3.010000e-25 126.0
5 TraesCS3D01G295800 chr3A 95.186 1288 56 3 815 2098 542736186 542734901 0.000000e+00 2030.0
6 TraesCS3D01G295800 chr3A 88.176 499 22 15 2166 2645 542734894 542734414 6.970000e-156 560.0
7 TraesCS3D01G295800 chr3A 94.839 155 8 0 412 566 542736611 542736457 2.870000e-60 243.0
8 TraesCS3D01G295800 chr1D 81.140 228 29 11 258 482 307694940 307694724 1.370000e-38 171.0
9 TraesCS3D01G295800 chr1D 82.143 168 18 7 256 412 228041605 228041439 1.800000e-27 134.0
10 TraesCS3D01G295800 chr1D 80.921 152 18 7 488 637 307694683 307694541 3.030000e-20 110.0
11 TraesCS3D01G295800 chr1A 83.636 165 17 6 503 657 386783605 386783441 2.310000e-31 147.0
12 TraesCS3D01G295800 chr5A 86.047 129 10 7 286 406 680319196 680319324 6.470000e-27 132.0
13 TraesCS3D01G295800 chr5A 84.328 134 12 5 288 412 570793713 570793580 3.900000e-24 122.0
14 TraesCS3D01G295800 chr1B 82.166 157 23 5 503 656 416772048 416771894 2.330000e-26 130.0
15 TraesCS3D01G295800 chr1B 80.000 160 18 11 255 405 416773668 416773514 3.920000e-19 106.0
16 TraesCS3D01G295800 chr7A 85.271 129 11 7 286 406 27052783 27052911 3.010000e-25 126.0
17 TraesCS3D01G295800 chr5D 82.517 143 14 7 255 391 476755159 476755022 6.520000e-22 115.0
18 TraesCS3D01G295800 chr4D 80.000 165 22 8 255 413 82241495 82241336 8.430000e-21 111.0
19 TraesCS3D01G295800 chr7D 78.512 121 13 9 1 119 33422841 33422950 1.850000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G295800 chr3D 408654873 408657751 2878 False 5317.000000 5317 100.000000 1 2879 1 chr3D.!!$F1 2878
1 TraesCS3D01G295800 chr3B 534515122 534517533 2411 False 935.666667 2386 91.775667 464 2572 3 chr3B.!!$F1 2108
2 TraesCS3D01G295800 chr3A 542734414 542736611 2197 True 944.333333 2030 92.733667 412 2645 3 chr3A.!!$R1 2233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 749 0.179234 TTCTGGTCTGTTTCGCACCA 59.821 50.0 0.0 0.0 37.89 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2595 3074 0.036294 AGCCCGTCTCAAAAGCCTAC 60.036 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.327429 AGCGCAATTTTTATGTATATTTTGTGC 58.673 29.630 11.47 9.18 45.01 4.57
51 52 8.113062 GCGCAATTTTTATGTATATTTTGTGCA 58.887 29.630 0.30 0.00 44.42 4.57
52 53 9.964253 CGCAATTTTTATGTATATTTTGTGCAA 57.036 25.926 0.00 0.00 0.00 4.08
68 69 9.771915 ATTTTGTGCAATTTTTGTTACTCTTTG 57.228 25.926 0.00 0.00 0.00 2.77
69 70 6.343226 TGTGCAATTTTTGTTACTCTTTGC 57.657 33.333 0.00 0.00 38.68 3.68
70 71 6.105333 TGTGCAATTTTTGTTACTCTTTGCT 58.895 32.000 0.00 0.00 38.91 3.91
71 72 6.593382 TGTGCAATTTTTGTTACTCTTTGCTT 59.407 30.769 0.00 0.00 38.91 3.91
72 73 7.118971 TGTGCAATTTTTGTTACTCTTTGCTTT 59.881 29.630 0.00 0.00 38.91 3.51
73 74 8.599774 GTGCAATTTTTGTTACTCTTTGCTTTA 58.400 29.630 0.00 0.00 38.91 1.85
74 75 8.816144 TGCAATTTTTGTTACTCTTTGCTTTAG 58.184 29.630 0.00 0.00 38.91 1.85
75 76 9.030301 GCAATTTTTGTTACTCTTTGCTTTAGA 57.970 29.630 0.00 0.00 36.10 2.10
87 88 9.077885 ACTCTTTGCTTTAGATTTTGTTATCCA 57.922 29.630 0.00 0.00 0.00 3.41
126 127 0.666374 GGTAATACCAATGCCGGTGC 59.334 55.000 1.90 0.00 40.39 5.01
127 128 2.019668 GGTAATACCAATGCCGGTGCA 61.020 52.381 1.90 0.00 45.08 4.57
128 129 3.525078 GGTAATACCAATGCCGGTGCAA 61.525 50.000 1.90 0.00 44.52 4.08
129 130 4.805956 GGTAATACCAATGCCGGTGCAAT 61.806 47.826 1.90 0.00 44.52 3.56
130 131 6.239143 GGTAATACCAATGCCGGTGCAATT 62.239 45.833 1.90 0.00 44.52 2.32
131 132 7.638129 GGTAATACCAATGCCGGTGCAATTT 62.638 44.000 1.90 0.00 44.52 1.82
135 136 2.642129 TGCCGGTGCAATTTCGTG 59.358 55.556 1.90 0.00 46.66 4.35
136 137 2.804931 GCCGGTGCAATTTCGTGC 60.805 61.111 1.90 0.00 45.15 5.34
144 145 1.838913 GCAATTTCGTGCACTGTTGT 58.161 45.000 16.19 0.00 44.29 3.32
145 146 1.518102 GCAATTTCGTGCACTGTTGTG 59.482 47.619 16.19 8.64 44.29 3.33
154 155 3.327464 CACTGTTGTGCGCAAGTTT 57.673 47.368 14.00 0.00 37.38 2.66
155 156 1.627879 CACTGTTGTGCGCAAGTTTT 58.372 45.000 14.00 0.00 37.38 2.43
156 157 1.991965 CACTGTTGTGCGCAAGTTTTT 59.008 42.857 14.00 0.00 37.38 1.94
157 158 3.175152 CACTGTTGTGCGCAAGTTTTTA 58.825 40.909 14.00 0.00 37.38 1.52
158 159 3.610242 CACTGTTGTGCGCAAGTTTTTAA 59.390 39.130 14.00 0.00 37.38 1.52
159 160 4.090642 CACTGTTGTGCGCAAGTTTTTAAA 59.909 37.500 14.00 0.00 37.38 1.52
160 161 4.326009 ACTGTTGTGCGCAAGTTTTTAAAG 59.674 37.500 14.00 3.04 41.68 1.85
161 162 3.614616 TGTTGTGCGCAAGTTTTTAAAGG 59.385 39.130 14.00 0.00 41.68 3.11
162 163 3.512033 TGTGCGCAAGTTTTTAAAGGT 57.488 38.095 14.00 0.00 41.68 3.50
163 164 3.851098 TGTGCGCAAGTTTTTAAAGGTT 58.149 36.364 14.00 0.00 41.68 3.50
164 165 4.246458 TGTGCGCAAGTTTTTAAAGGTTT 58.754 34.783 14.00 0.00 41.68 3.27
165 166 4.691216 TGTGCGCAAGTTTTTAAAGGTTTT 59.309 33.333 14.00 0.00 41.68 2.43
166 167 5.179555 TGTGCGCAAGTTTTTAAAGGTTTTT 59.820 32.000 14.00 0.00 41.68 1.94
167 168 5.730802 GTGCGCAAGTTTTTAAAGGTTTTTC 59.269 36.000 14.00 0.00 41.68 2.29
168 169 5.639931 TGCGCAAGTTTTTAAAGGTTTTTCT 59.360 32.000 8.16 0.00 41.68 2.52
169 170 6.147985 TGCGCAAGTTTTTAAAGGTTTTTCTT 59.852 30.769 8.16 0.00 41.68 2.52
170 171 7.331193 TGCGCAAGTTTTTAAAGGTTTTTCTTA 59.669 29.630 8.16 0.00 41.68 2.10
171 172 8.332464 GCGCAAGTTTTTAAAGGTTTTTCTTAT 58.668 29.630 0.30 0.00 41.68 1.73
172 173 9.843874 CGCAAGTTTTTAAAGGTTTTTCTTATC 57.156 29.630 0.00 0.00 0.00 1.75
185 186 9.429109 AGGTTTTTCTTATCTTAAAGGGTTTCA 57.571 29.630 0.00 0.00 0.00 2.69
228 229 9.639601 AACCTTTTGTTTTGTCTCTTCTAAAAG 57.360 29.630 0.00 0.00 31.47 2.27
229 230 8.634475 CCTTTTGTTTTGTCTCTTCTAAAAGG 57.366 34.615 0.00 0.00 43.40 3.11
230 231 7.706607 CCTTTTGTTTTGTCTCTTCTAAAAGGG 59.293 37.037 14.27 0.00 44.37 3.95
231 232 7.712204 TTTGTTTTGTCTCTTCTAAAAGGGT 57.288 32.000 0.00 0.00 34.35 4.34
232 233 8.810990 TTTGTTTTGTCTCTTCTAAAAGGGTA 57.189 30.769 0.00 0.00 34.35 3.69
233 234 8.810990 TTGTTTTGTCTCTTCTAAAAGGGTAA 57.189 30.769 0.00 0.00 34.35 2.85
234 235 8.990163 TGTTTTGTCTCTTCTAAAAGGGTAAT 57.010 30.769 0.00 0.00 34.35 1.89
235 236 9.416284 TGTTTTGTCTCTTCTAAAAGGGTAATT 57.584 29.630 0.00 0.00 34.35 1.40
239 240 8.990163 TGTCTCTTCTAAAAGGGTAATTTTGT 57.010 30.769 0.00 0.00 34.35 2.83
240 241 9.416284 TGTCTCTTCTAAAAGGGTAATTTTGTT 57.584 29.630 0.00 0.00 34.35 2.83
253 254 9.679661 AGGGTAATTTTGTTTCATTCTTTTTGT 57.320 25.926 0.00 0.00 0.00 2.83
254 255 9.929722 GGGTAATTTTGTTTCATTCTTTTTGTC 57.070 29.630 0.00 0.00 0.00 3.18
263 264 9.212641 TGTTTCATTCTTTTTGTCACAAATTCA 57.787 25.926 3.17 0.00 0.00 2.57
267 268 9.820725 TCATTCTTTTTGTCACAAATTCATTCT 57.179 25.926 3.17 0.00 0.00 2.40
270 271 8.647143 TCTTTTTGTCACAAATTCATTCTTCC 57.353 30.769 3.17 0.00 0.00 3.46
271 272 8.256605 TCTTTTTGTCACAAATTCATTCTTCCA 58.743 29.630 3.17 0.00 0.00 3.53
272 273 7.769272 TTTTGTCACAAATTCATTCTTCCAC 57.231 32.000 3.17 0.00 0.00 4.02
273 274 6.462552 TTGTCACAAATTCATTCTTCCACA 57.537 33.333 0.00 0.00 0.00 4.17
274 275 6.075762 TGTCACAAATTCATTCTTCCACAG 57.924 37.500 0.00 0.00 0.00 3.66
275 276 5.827267 TGTCACAAATTCATTCTTCCACAGA 59.173 36.000 0.00 0.00 0.00 3.41
276 277 6.320926 TGTCACAAATTCATTCTTCCACAGAA 59.679 34.615 0.00 0.00 46.01 3.02
277 278 7.147932 TGTCACAAATTCATTCTTCCACAGAAA 60.148 33.333 0.00 0.00 45.06 2.52
278 279 7.706179 GTCACAAATTCATTCTTCCACAGAAAA 59.294 33.333 0.00 0.00 45.06 2.29
279 280 7.706179 TCACAAATTCATTCTTCCACAGAAAAC 59.294 33.333 0.00 0.00 45.06 2.43
280 281 7.707893 CACAAATTCATTCTTCCACAGAAAACT 59.292 33.333 0.00 0.00 45.06 2.66
281 282 8.260114 ACAAATTCATTCTTCCACAGAAAACTT 58.740 29.630 0.00 0.00 45.06 2.66
282 283 8.758715 CAAATTCATTCTTCCACAGAAAACTTC 58.241 33.333 0.00 0.00 45.06 3.01
283 284 7.587037 ATTCATTCTTCCACAGAAAACTTCA 57.413 32.000 0.00 0.00 45.06 3.02
284 285 7.587037 TTCATTCTTCCACAGAAAACTTCAT 57.413 32.000 0.00 0.00 45.06 2.57
285 286 8.690203 TTCATTCTTCCACAGAAAACTTCATA 57.310 30.769 0.00 0.00 45.06 2.15
286 287 8.868522 TCATTCTTCCACAGAAAACTTCATAT 57.131 30.769 0.00 0.00 45.06 1.78
287 288 9.300681 TCATTCTTCCACAGAAAACTTCATATT 57.699 29.630 0.00 0.00 45.06 1.28
288 289 9.918630 CATTCTTCCACAGAAAACTTCATATTT 57.081 29.630 0.00 0.00 45.06 1.40
352 353 8.934507 TTATTTCATTTTTAAGGGCAATACCG 57.065 30.769 0.00 0.00 40.62 4.02
353 354 6.591750 TTTCATTTTTAAGGGCAATACCGA 57.408 33.333 0.00 0.00 40.62 4.69
354 355 6.783708 TTCATTTTTAAGGGCAATACCGAT 57.216 33.333 0.00 0.00 40.62 4.18
355 356 6.142818 TCATTTTTAAGGGCAATACCGATG 57.857 37.500 0.00 0.00 40.62 3.84
356 357 5.654650 TCATTTTTAAGGGCAATACCGATGT 59.345 36.000 0.00 0.00 40.62 3.06
357 358 5.570234 TTTTTAAGGGCAATACCGATGTC 57.430 39.130 0.00 0.00 40.62 3.06
358 359 3.916359 TTAAGGGCAATACCGATGTCA 57.084 42.857 0.00 0.00 40.62 3.58
359 360 2.038387 AAGGGCAATACCGATGTCAC 57.962 50.000 0.00 0.00 40.62 3.67
360 361 1.204146 AGGGCAATACCGATGTCACT 58.796 50.000 0.00 0.00 40.62 3.41
361 362 2.394632 AGGGCAATACCGATGTCACTA 58.605 47.619 0.00 0.00 40.62 2.74
362 363 2.769663 AGGGCAATACCGATGTCACTAA 59.230 45.455 0.00 0.00 40.62 2.24
363 364 3.391296 AGGGCAATACCGATGTCACTAAT 59.609 43.478 0.00 0.00 40.62 1.73
364 365 3.746492 GGGCAATACCGATGTCACTAATC 59.254 47.826 0.00 0.00 40.62 1.75
365 366 3.746492 GGCAATACCGATGTCACTAATCC 59.254 47.826 0.00 0.00 0.00 3.01
366 367 4.377021 GCAATACCGATGTCACTAATCCA 58.623 43.478 0.00 0.00 0.00 3.41
367 368 4.997395 GCAATACCGATGTCACTAATCCAT 59.003 41.667 0.00 0.00 0.00 3.41
368 369 5.470098 GCAATACCGATGTCACTAATCCATT 59.530 40.000 0.00 0.00 0.00 3.16
369 370 6.649141 GCAATACCGATGTCACTAATCCATTA 59.351 38.462 0.00 0.00 0.00 1.90
370 371 7.360101 GCAATACCGATGTCACTAATCCATTAC 60.360 40.741 0.00 0.00 0.00 1.89
371 372 5.871396 ACCGATGTCACTAATCCATTACT 57.129 39.130 0.00 0.00 0.00 2.24
372 373 6.235231 ACCGATGTCACTAATCCATTACTT 57.765 37.500 0.00 0.00 0.00 2.24
373 374 6.650120 ACCGATGTCACTAATCCATTACTTT 58.350 36.000 0.00 0.00 0.00 2.66
374 375 7.110155 ACCGATGTCACTAATCCATTACTTTT 58.890 34.615 0.00 0.00 0.00 2.27
375 376 7.610305 ACCGATGTCACTAATCCATTACTTTTT 59.390 33.333 0.00 0.00 0.00 1.94
376 377 9.104965 CCGATGTCACTAATCCATTACTTTTTA 57.895 33.333 0.00 0.00 0.00 1.52
401 402 7.861425 GAAAACACTTTCTTGCGAAAATTTC 57.139 32.000 0.00 0.00 38.58 2.17
402 403 6.959671 AAACACTTTCTTGCGAAAATTTCA 57.040 29.167 6.53 0.00 38.58 2.69
403 404 5.949233 ACACTTTCTTGCGAAAATTTCAC 57.051 34.783 6.53 0.00 38.58 3.18
404 405 5.650543 ACACTTTCTTGCGAAAATTTCACT 58.349 33.333 6.53 0.00 38.58 3.41
405 406 6.791303 ACACTTTCTTGCGAAAATTTCACTA 58.209 32.000 6.53 0.00 38.58 2.74
406 407 6.912591 ACACTTTCTTGCGAAAATTTCACTAG 59.087 34.615 6.53 3.00 38.58 2.57
407 408 5.915196 ACTTTCTTGCGAAAATTTCACTAGC 59.085 36.000 6.53 1.83 38.58 3.42
408 409 5.431420 TTCTTGCGAAAATTTCACTAGCA 57.569 34.783 6.53 4.42 0.00 3.49
409 410 5.627499 TCTTGCGAAAATTTCACTAGCAT 57.373 34.783 6.53 0.00 32.98 3.79
410 411 6.735678 TCTTGCGAAAATTTCACTAGCATA 57.264 33.333 6.53 0.00 32.98 3.14
441 442 1.404035 GCCAGGTAACAAATTAGCCCG 59.596 52.381 0.00 0.00 39.22 6.13
442 443 2.942306 GCCAGGTAACAAATTAGCCCGA 60.942 50.000 0.00 0.00 39.22 5.14
501 508 0.669619 TGCACTTCACAACCATGCAG 59.330 50.000 0.00 0.00 41.18 4.41
621 635 2.698274 AGAAAACCGACTTGCCCAAATT 59.302 40.909 0.00 0.00 0.00 1.82
624 638 3.866883 AACCGACTTGCCCAAATTATG 57.133 42.857 0.00 0.00 0.00 1.90
705 747 1.332904 CGTTTCTGGTCTGTTTCGCAC 60.333 52.381 0.00 0.00 0.00 5.34
707 749 0.179234 TTCTGGTCTGTTTCGCACCA 59.821 50.000 0.00 0.00 37.89 4.17
723 767 0.759346 ACCACCAGCCGATAAGGATC 59.241 55.000 0.00 0.00 45.00 3.36
744 788 1.099295 ATCCATGCACGCCACATCAG 61.099 55.000 0.00 0.00 0.00 2.90
753 1115 2.679837 CACGCCACATCAGAAGCTTAAT 59.320 45.455 0.00 0.00 0.00 1.40
815 1177 3.626729 GGTTCACCTCCTGCCTAGTACTA 60.627 52.174 1.89 1.89 0.00 1.82
1416 1849 1.715862 CGCAGCTGCAGCAGATCAAT 61.716 55.000 38.24 15.14 45.16 2.57
1419 1852 1.950216 CAGCTGCAGCAGATCAATGAT 59.050 47.619 38.24 12.75 45.16 2.45
1556 1992 1.524621 CAGCATTAGTCGGCCAGGG 60.525 63.158 2.24 0.00 0.00 4.45
1582 2018 1.013323 GCTAAGCGCGACGACATTG 60.013 57.895 12.10 0.00 0.00 2.82
1623 2059 1.994507 AATCGTCAGGAGGACTCGCG 61.995 60.000 0.00 0.00 44.68 5.87
1762 2198 3.790437 AGGCGGTGGAGATGCTGG 61.790 66.667 0.00 0.00 0.00 4.85
1930 2366 2.074230 CTTGCTTTGCCGCTCCAACA 62.074 55.000 0.00 0.00 0.00 3.33
2111 2551 6.864685 TGTATCCGTAACTAGTTTCTTGTGTG 59.135 38.462 14.49 0.00 0.00 3.82
2118 2558 2.857592 AGTTTCTTGTGTGCTTGCAG 57.142 45.000 0.00 0.00 0.00 4.41
2120 2560 2.493278 AGTTTCTTGTGTGCTTGCAGTT 59.507 40.909 0.00 0.00 0.00 3.16
2121 2561 2.565210 TTCTTGTGTGCTTGCAGTTG 57.435 45.000 0.00 0.00 0.00 3.16
2122 2562 0.101040 TCTTGTGTGCTTGCAGTTGC 59.899 50.000 0.00 0.00 42.50 4.17
2141 2581 4.230314 TGCATATGTTCGCTCTCTAGTC 57.770 45.455 4.29 0.00 0.00 2.59
2151 2591 2.032377 CGCTCTCTAGTCTGATCCGTTC 60.032 54.545 0.00 0.00 0.00 3.95
2152 2592 3.211045 GCTCTCTAGTCTGATCCGTTCT 58.789 50.000 0.00 0.00 0.00 3.01
2153 2593 3.630312 GCTCTCTAGTCTGATCCGTTCTT 59.370 47.826 0.00 0.00 0.00 2.52
2154 2594 4.097286 GCTCTCTAGTCTGATCCGTTCTTT 59.903 45.833 0.00 0.00 0.00 2.52
2155 2595 5.393678 GCTCTCTAGTCTGATCCGTTCTTTT 60.394 44.000 0.00 0.00 0.00 2.27
2156 2596 6.591750 TCTCTAGTCTGATCCGTTCTTTTT 57.408 37.500 0.00 0.00 0.00 1.94
2264 2704 3.285484 AGAGGAGCGGTTAGTTTATCGA 58.715 45.455 0.00 0.00 0.00 3.59
2283 2723 2.356553 TTCCGTTTCCCGTCGCTG 60.357 61.111 0.00 0.00 33.66 5.18
2482 2961 3.142838 GGCCGTGGAGCATGCAAT 61.143 61.111 21.98 0.00 39.09 3.56
2494 2973 2.624316 CATGCAATGCGTTCTGTTCT 57.376 45.000 0.00 0.00 37.62 3.01
2495 2974 3.745332 CATGCAATGCGTTCTGTTCTA 57.255 42.857 0.00 0.00 37.62 2.10
2496 2975 4.082274 CATGCAATGCGTTCTGTTCTAA 57.918 40.909 0.00 0.00 37.62 2.10
2501 2980 4.093408 GCAATGCGTTCTGTTCTAATCTGA 59.907 41.667 0.00 0.00 0.00 3.27
2568 3047 2.010582 GCCGAGGAGTGTCAGCCTAG 62.011 65.000 0.00 0.00 33.84 3.02
2579 3058 3.238438 AGCCTAGCTGCTGATGGG 58.762 61.111 13.43 6.89 40.90 4.00
2580 3059 1.383664 AGCCTAGCTGCTGATGGGA 60.384 57.895 15.39 0.00 40.90 4.37
2581 3060 0.984961 AGCCTAGCTGCTGATGGGAA 60.985 55.000 15.39 0.00 40.90 3.97
2582 3061 0.817229 GCCTAGCTGCTGATGGGAAC 60.817 60.000 15.39 0.00 31.43 3.62
2632 3111 0.734942 CTACACCGTTCGATGGCGTT 60.735 55.000 3.56 0.00 38.98 4.84
2645 3124 2.254350 GCGTTGGAGGCCGTTTTC 59.746 61.111 0.00 0.00 0.00 2.29
2646 3125 2.258726 GCGTTGGAGGCCGTTTTCT 61.259 57.895 0.00 0.00 0.00 2.52
2647 3126 1.792118 GCGTTGGAGGCCGTTTTCTT 61.792 55.000 0.00 0.00 0.00 2.52
2648 3127 0.666374 CGTTGGAGGCCGTTTTCTTT 59.334 50.000 0.00 0.00 0.00 2.52
2649 3128 1.066454 CGTTGGAGGCCGTTTTCTTTT 59.934 47.619 0.00 0.00 0.00 2.27
2650 3129 2.480587 CGTTGGAGGCCGTTTTCTTTTT 60.481 45.455 0.00 0.00 0.00 1.94
2651 3130 3.243134 CGTTGGAGGCCGTTTTCTTTTTA 60.243 43.478 0.00 0.00 0.00 1.52
2652 3131 3.994204 TGGAGGCCGTTTTCTTTTTAC 57.006 42.857 0.00 0.00 0.00 2.01
2653 3132 2.624364 TGGAGGCCGTTTTCTTTTTACC 59.376 45.455 0.00 0.00 0.00 2.85
2654 3133 2.624364 GGAGGCCGTTTTCTTTTTACCA 59.376 45.455 0.00 0.00 0.00 3.25
2655 3134 3.257375 GGAGGCCGTTTTCTTTTTACCAT 59.743 43.478 0.00 0.00 0.00 3.55
2656 3135 4.262292 GGAGGCCGTTTTCTTTTTACCATT 60.262 41.667 0.00 0.00 0.00 3.16
2657 3136 5.284861 AGGCCGTTTTCTTTTTACCATTT 57.715 34.783 0.00 0.00 0.00 2.32
2658 3137 5.294356 AGGCCGTTTTCTTTTTACCATTTC 58.706 37.500 0.00 0.00 0.00 2.17
2659 3138 5.069914 AGGCCGTTTTCTTTTTACCATTTCT 59.930 36.000 0.00 0.00 0.00 2.52
2660 3139 5.756347 GGCCGTTTTCTTTTTACCATTTCTT 59.244 36.000 0.00 0.00 0.00 2.52
2661 3140 6.292649 GGCCGTTTTCTTTTTACCATTTCTTG 60.293 38.462 0.00 0.00 0.00 3.02
2662 3141 6.477360 GCCGTTTTCTTTTTACCATTTCTTGA 59.523 34.615 0.00 0.00 0.00 3.02
2663 3142 7.306574 GCCGTTTTCTTTTTACCATTTCTTGAG 60.307 37.037 0.00 0.00 0.00 3.02
2664 3143 7.704899 CCGTTTTCTTTTTACCATTTCTTGAGT 59.295 33.333 0.00 0.00 0.00 3.41
2665 3144 8.743099 CGTTTTCTTTTTACCATTTCTTGAGTC 58.257 33.333 0.00 0.00 0.00 3.36
2666 3145 9.581099 GTTTTCTTTTTACCATTTCTTGAGTCA 57.419 29.630 0.00 0.00 0.00 3.41
2667 3146 9.801873 TTTTCTTTTTACCATTTCTTGAGTCAG 57.198 29.630 0.00 0.00 0.00 3.51
2668 3147 8.746052 TTCTTTTTACCATTTCTTGAGTCAGA 57.254 30.769 0.00 0.00 0.00 3.27
2669 3148 8.924511 TCTTTTTACCATTTCTTGAGTCAGAT 57.075 30.769 0.00 0.00 0.00 2.90
2670 3149 9.003658 TCTTTTTACCATTTCTTGAGTCAGATC 57.996 33.333 0.00 0.00 0.00 2.75
2671 3150 8.924511 TTTTTACCATTTCTTGAGTCAGATCT 57.075 30.769 0.00 0.00 0.00 2.75
2672 3151 7.912056 TTTACCATTTCTTGAGTCAGATCTG 57.088 36.000 17.07 17.07 0.00 2.90
2673 3152 5.752036 ACCATTTCTTGAGTCAGATCTGA 57.248 39.130 21.67 21.67 37.24 3.27
2674 3153 6.310764 ACCATTTCTTGAGTCAGATCTGAT 57.689 37.500 27.51 16.39 42.18 2.90
2675 3154 6.347696 ACCATTTCTTGAGTCAGATCTGATC 58.652 40.000 27.51 22.84 42.18 2.92
2676 3155 5.759273 CCATTTCTTGAGTCAGATCTGATCC 59.241 44.000 27.51 20.89 42.18 3.36
2677 3156 6.408320 CCATTTCTTGAGTCAGATCTGATCCT 60.408 42.308 27.51 20.36 42.18 3.24
2678 3157 5.595257 TTCTTGAGTCAGATCTGATCCTG 57.405 43.478 27.51 16.33 42.18 3.86
2679 3158 3.959449 TCTTGAGTCAGATCTGATCCTGG 59.041 47.826 27.51 17.19 42.18 4.45
2680 3159 3.395054 TGAGTCAGATCTGATCCTGGT 57.605 47.619 27.51 9.13 42.18 4.00
2681 3160 3.717576 TGAGTCAGATCTGATCCTGGTT 58.282 45.455 27.51 8.36 42.18 3.67
2682 3161 3.703556 TGAGTCAGATCTGATCCTGGTTC 59.296 47.826 27.51 12.47 42.18 3.62
2683 3162 2.692557 AGTCAGATCTGATCCTGGTTCG 59.307 50.000 27.51 0.00 42.18 3.95
2684 3163 2.690497 GTCAGATCTGATCCTGGTTCGA 59.310 50.000 27.51 0.00 42.18 3.71
2685 3164 3.131223 GTCAGATCTGATCCTGGTTCGAA 59.869 47.826 27.51 0.00 42.18 3.71
2686 3165 3.382865 TCAGATCTGATCCTGGTTCGAAG 59.617 47.826 21.67 0.00 34.14 3.79
2687 3166 3.382865 CAGATCTGATCCTGGTTCGAAGA 59.617 47.826 18.34 0.00 0.00 2.87
2688 3167 4.026744 AGATCTGATCCTGGTTCGAAGAA 58.973 43.478 13.83 0.00 45.90 2.52
2689 3168 4.467795 AGATCTGATCCTGGTTCGAAGAAA 59.532 41.667 13.83 0.00 45.90 2.52
2690 3169 4.826274 TCTGATCCTGGTTCGAAGAAAT 57.174 40.909 0.00 0.00 45.90 2.17
2691 3170 5.165961 TCTGATCCTGGTTCGAAGAAATT 57.834 39.130 0.00 0.00 45.90 1.82
2692 3171 5.560724 TCTGATCCTGGTTCGAAGAAATTT 58.439 37.500 0.00 0.00 45.90 1.82
2693 3172 5.643777 TCTGATCCTGGTTCGAAGAAATTTC 59.356 40.000 10.33 10.33 45.90 2.17
2694 3173 4.391830 TGATCCTGGTTCGAAGAAATTTCG 59.608 41.667 12.42 2.06 45.90 3.46
2695 3174 3.071479 TCCTGGTTCGAAGAAATTTCGG 58.929 45.455 12.42 6.58 45.90 4.30
2696 3175 3.071479 CCTGGTTCGAAGAAATTTCGGA 58.929 45.455 12.42 8.69 45.90 4.55
2697 3176 3.500680 CCTGGTTCGAAGAAATTTCGGAA 59.499 43.478 12.42 13.57 45.90 4.30
2698 3177 4.156008 CCTGGTTCGAAGAAATTTCGGAAT 59.844 41.667 18.60 6.96 45.90 3.01
2699 3178 5.291293 TGGTTCGAAGAAATTTCGGAATC 57.709 39.130 18.60 18.39 45.90 2.52
2700 3179 5.001232 TGGTTCGAAGAAATTTCGGAATCT 58.999 37.500 22.11 2.92 45.90 2.40
2701 3180 5.106712 TGGTTCGAAGAAATTTCGGAATCTG 60.107 40.000 22.11 13.00 45.90 2.90
2702 3181 5.121768 GGTTCGAAGAAATTTCGGAATCTGA 59.878 40.000 18.60 12.18 45.90 3.27
2703 3182 5.779806 TCGAAGAAATTTCGGAATCTGAC 57.220 39.130 12.42 0.00 41.78 3.51
2704 3183 4.630069 TCGAAGAAATTTCGGAATCTGACC 59.370 41.667 12.42 0.00 41.78 4.02
2714 3193 4.579270 CGGAATCTGACCGTTTTTCTAC 57.421 45.455 0.00 0.00 44.57 2.59
2715 3194 3.370061 CGGAATCTGACCGTTTTTCTACC 59.630 47.826 0.00 0.00 44.57 3.18
2716 3195 3.370061 GGAATCTGACCGTTTTTCTACCG 59.630 47.826 0.00 0.00 0.00 4.02
2717 3196 3.672767 ATCTGACCGTTTTTCTACCGT 57.327 42.857 0.00 0.00 0.00 4.83
2718 3197 3.017265 TCTGACCGTTTTTCTACCGTC 57.983 47.619 0.00 0.00 0.00 4.79
2719 3198 1.717645 CTGACCGTTTTTCTACCGTCG 59.282 52.381 0.00 0.00 31.59 5.12
2720 3199 1.336440 TGACCGTTTTTCTACCGTCGA 59.664 47.619 0.00 0.00 31.59 4.20
2721 3200 1.981533 GACCGTTTTTCTACCGTCGAG 59.018 52.381 0.00 0.00 0.00 4.04
2723 3202 0.712222 CGTTTTTCTACCGTCGAGGC 59.288 55.000 0.00 0.00 46.52 4.70
2724 3203 1.073964 GTTTTTCTACCGTCGAGGCC 58.926 55.000 0.00 0.00 46.52 5.19
2725 3204 0.680618 TTTTTCTACCGTCGAGGCCA 59.319 50.000 5.01 0.00 46.52 5.36
2726 3205 0.899720 TTTTCTACCGTCGAGGCCAT 59.100 50.000 5.01 0.00 46.52 4.40
2727 3206 0.458669 TTTCTACCGTCGAGGCCATC 59.541 55.000 5.01 0.00 46.52 3.51
2738 3217 2.457366 GAGGCCATCGGGTATACAAG 57.543 55.000 5.01 0.00 36.17 3.16
2739 3218 0.396811 AGGCCATCGGGTATACAAGC 59.603 55.000 5.01 0.00 36.17 4.01
2740 3219 0.605589 GGCCATCGGGTATACAAGCC 60.606 60.000 5.01 3.58 42.76 4.35
2741 3220 0.396811 GCCATCGGGTATACAAGCCT 59.603 55.000 5.01 0.00 44.11 4.58
2742 3221 1.621814 GCCATCGGGTATACAAGCCTA 59.378 52.381 5.01 0.00 44.11 3.93
2743 3222 2.612221 GCCATCGGGTATACAAGCCTAC 60.612 54.545 5.01 0.00 44.11 3.18
2744 3223 2.028385 CCATCGGGTATACAAGCCTACC 60.028 54.545 5.01 0.00 44.11 3.18
2745 3224 1.321474 TCGGGTATACAAGCCTACCG 58.679 55.000 5.01 6.67 44.11 4.02
2746 3225 1.035139 CGGGTATACAAGCCTACCGT 58.965 55.000 5.01 0.00 44.11 4.83
2747 3226 1.000938 CGGGTATACAAGCCTACCGTC 60.001 57.143 5.01 0.00 44.11 4.79
2748 3227 2.034124 GGGTATACAAGCCTACCGTCA 58.966 52.381 5.01 0.00 42.89 4.35
2749 3228 2.431782 GGGTATACAAGCCTACCGTCAA 59.568 50.000 5.01 0.00 42.89 3.18
2750 3229 3.492137 GGGTATACAAGCCTACCGTCAAG 60.492 52.174 5.01 0.00 42.89 3.02
2751 3230 6.535745 GGGTATACAAGCCTACCGTCAAGG 62.536 54.167 5.01 0.00 43.84 3.61
2760 3239 3.411351 CCGTCAAGGTTCGTGGCG 61.411 66.667 1.26 1.26 43.57 5.69
2761 3240 3.411351 CGTCAAGGTTCGTGGCGG 61.411 66.667 0.34 0.00 40.34 6.13
2762 3241 2.280592 GTCAAGGTTCGTGGCGGT 60.281 61.111 0.00 0.00 0.00 5.68
2763 3242 1.005867 GTCAAGGTTCGTGGCGGTA 60.006 57.895 0.00 0.00 0.00 4.02
2764 3243 1.012486 GTCAAGGTTCGTGGCGGTAG 61.012 60.000 0.00 0.00 0.00 3.18
2765 3244 1.180456 TCAAGGTTCGTGGCGGTAGA 61.180 55.000 0.00 0.00 0.00 2.59
2766 3245 1.012486 CAAGGTTCGTGGCGGTAGAC 61.012 60.000 0.00 0.00 0.00 2.59
2767 3246 1.466025 AAGGTTCGTGGCGGTAGACA 61.466 55.000 0.00 0.00 0.00 3.41
2768 3247 1.005867 GGTTCGTGGCGGTAGACAA 60.006 57.895 0.00 0.00 36.97 3.18
2769 3248 1.287041 GGTTCGTGGCGGTAGACAAC 61.287 60.000 0.00 0.00 36.97 3.32
2770 3249 0.319297 GTTCGTGGCGGTAGACAACT 60.319 55.000 0.00 0.00 36.97 3.16
2771 3250 0.390124 TTCGTGGCGGTAGACAACTT 59.610 50.000 0.00 0.00 36.97 2.66
2772 3251 1.246649 TCGTGGCGGTAGACAACTTA 58.753 50.000 0.00 0.00 36.97 2.24
2773 3252 1.820519 TCGTGGCGGTAGACAACTTAT 59.179 47.619 0.00 0.00 36.97 1.73
2774 3253 2.159338 TCGTGGCGGTAGACAACTTATC 60.159 50.000 0.00 0.00 36.97 1.75
2775 3254 2.547826 GTGGCGGTAGACAACTTATCC 58.452 52.381 0.00 0.00 36.97 2.59
2776 3255 2.093869 GTGGCGGTAGACAACTTATCCA 60.094 50.000 0.00 0.00 36.97 3.41
2777 3256 2.093869 TGGCGGTAGACAACTTATCCAC 60.094 50.000 0.00 0.00 28.17 4.02
2778 3257 2.190981 GCGGTAGACAACTTATCCACG 58.809 52.381 0.00 0.00 0.00 4.94
2779 3258 2.159338 GCGGTAGACAACTTATCCACGA 60.159 50.000 0.00 0.00 0.00 4.35
2780 3259 3.674138 GCGGTAGACAACTTATCCACGAA 60.674 47.826 0.00 0.00 0.00 3.85
2781 3260 4.487948 CGGTAGACAACTTATCCACGAAA 58.512 43.478 0.00 0.00 0.00 3.46
2782 3261 4.325472 CGGTAGACAACTTATCCACGAAAC 59.675 45.833 0.00 0.00 0.00 2.78
2783 3262 5.232463 GGTAGACAACTTATCCACGAAACA 58.768 41.667 0.00 0.00 0.00 2.83
2784 3263 5.697633 GGTAGACAACTTATCCACGAAACAA 59.302 40.000 0.00 0.00 0.00 2.83
2785 3264 5.668558 AGACAACTTATCCACGAAACAAC 57.331 39.130 0.00 0.00 0.00 3.32
2786 3265 4.514066 AGACAACTTATCCACGAAACAACC 59.486 41.667 0.00 0.00 0.00 3.77
2787 3266 4.457466 ACAACTTATCCACGAAACAACCT 58.543 39.130 0.00 0.00 0.00 3.50
2788 3267 4.514066 ACAACTTATCCACGAAACAACCTC 59.486 41.667 0.00 0.00 0.00 3.85
2789 3268 3.323243 ACTTATCCACGAAACAACCTCG 58.677 45.455 0.00 0.00 42.06 4.63
2790 3269 1.717194 TATCCACGAAACAACCTCGC 58.283 50.000 0.00 0.00 39.97 5.03
2791 3270 0.953960 ATCCACGAAACAACCTCGCC 60.954 55.000 0.00 0.00 39.97 5.54
2792 3271 1.890041 CCACGAAACAACCTCGCCA 60.890 57.895 0.00 0.00 39.97 5.69
2793 3272 1.278637 CACGAAACAACCTCGCCAC 59.721 57.895 0.00 0.00 39.97 5.01
2794 3273 2.241880 ACGAAACAACCTCGCCACG 61.242 57.895 0.00 0.00 39.97 4.94
2795 3274 1.952133 CGAAACAACCTCGCCACGA 60.952 57.895 0.00 0.00 0.00 4.35
2796 3275 1.492319 CGAAACAACCTCGCCACGAA 61.492 55.000 0.00 0.00 34.74 3.85
2797 3276 0.658897 GAAACAACCTCGCCACGAAA 59.341 50.000 0.00 0.00 34.74 3.46
2798 3277 0.379316 AAACAACCTCGCCACGAAAC 59.621 50.000 0.00 0.00 34.74 2.78
2799 3278 0.745128 AACAACCTCGCCACGAAACA 60.745 50.000 0.00 0.00 34.74 2.83
2800 3279 1.157870 ACAACCTCGCCACGAAACAG 61.158 55.000 0.00 0.00 34.74 3.16
2801 3280 1.597027 AACCTCGCCACGAAACAGG 60.597 57.895 0.00 0.00 34.74 4.00
2807 3286 3.777925 CCACGAAACAGGCTCGCG 61.778 66.667 0.00 0.00 39.97 5.87
2808 3287 4.430423 CACGAAACAGGCTCGCGC 62.430 66.667 0.00 0.00 39.97 6.86
2809 3288 4.664677 ACGAAACAGGCTCGCGCT 62.665 61.111 5.56 0.00 39.97 5.92
2810 3289 2.506217 CGAAACAGGCTCGCGCTA 60.506 61.111 5.56 0.00 36.09 4.26
2811 3290 2.508891 CGAAACAGGCTCGCGCTAG 61.509 63.158 5.56 4.85 36.09 3.42
2812 3291 2.803713 GAAACAGGCTCGCGCTAGC 61.804 63.158 24.52 24.52 41.99 3.42
2818 3297 4.984689 GCTCGCGCTAGCCGGTAG 62.985 72.222 22.37 14.40 41.18 3.18
2819 3298 4.329697 CTCGCGCTAGCCGGTAGG 62.330 72.222 20.56 3.61 41.18 3.18
2831 3310 2.831685 CCGGTAGGCATGTATAAGCA 57.168 50.000 0.00 0.00 0.00 3.91
2832 3311 3.334583 CCGGTAGGCATGTATAAGCAT 57.665 47.619 0.00 0.00 0.00 3.79
2833 3312 3.674997 CCGGTAGGCATGTATAAGCATT 58.325 45.455 0.00 0.00 0.00 3.56
2834 3313 3.436704 CCGGTAGGCATGTATAAGCATTG 59.563 47.826 0.00 0.00 0.00 2.82
2835 3314 4.065088 CGGTAGGCATGTATAAGCATTGT 58.935 43.478 0.00 0.00 0.00 2.71
2836 3315 5.234752 CGGTAGGCATGTATAAGCATTGTA 58.765 41.667 0.00 0.00 0.00 2.41
2837 3316 5.874810 CGGTAGGCATGTATAAGCATTGTAT 59.125 40.000 0.00 0.00 0.00 2.29
2838 3317 6.371548 CGGTAGGCATGTATAAGCATTGTATT 59.628 38.462 0.00 0.00 0.00 1.89
2839 3318 7.094805 CGGTAGGCATGTATAAGCATTGTATTT 60.095 37.037 0.00 0.00 0.00 1.40
2840 3319 8.023128 GGTAGGCATGTATAAGCATTGTATTTG 58.977 37.037 0.00 0.00 0.00 2.32
2841 3320 7.822161 AGGCATGTATAAGCATTGTATTTGA 57.178 32.000 0.00 0.00 0.00 2.69
2842 3321 8.413309 AGGCATGTATAAGCATTGTATTTGAT 57.587 30.769 0.00 0.00 0.00 2.57
2843 3322 9.519191 AGGCATGTATAAGCATTGTATTTGATA 57.481 29.630 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 8.327429 GCACAAAATATACATAAAAATTGCGCT 58.673 29.630 9.73 0.00 0.00 5.92
25 26 8.113062 TGCACAAAATATACATAAAAATTGCGC 58.887 29.630 0.00 0.00 0.00 6.09
26 27 9.964253 TTGCACAAAATATACATAAAAATTGCG 57.036 25.926 0.00 0.00 0.00 4.85
42 43 9.771915 CAAAGAGTAACAAAAATTGCACAAAAT 57.228 25.926 0.00 0.00 0.00 1.82
43 44 7.748241 GCAAAGAGTAACAAAAATTGCACAAAA 59.252 29.630 0.00 0.00 40.86 2.44
44 45 7.118971 AGCAAAGAGTAACAAAAATTGCACAAA 59.881 29.630 9.83 0.00 42.95 2.83
45 46 6.593382 AGCAAAGAGTAACAAAAATTGCACAA 59.407 30.769 9.83 0.00 42.95 3.33
46 47 6.105333 AGCAAAGAGTAACAAAAATTGCACA 58.895 32.000 9.83 0.00 42.95 4.57
47 48 6.588348 AGCAAAGAGTAACAAAAATTGCAC 57.412 33.333 9.83 0.00 42.95 4.57
48 49 7.608308 AAAGCAAAGAGTAACAAAAATTGCA 57.392 28.000 9.83 0.00 42.95 4.08
49 50 9.030301 TCTAAAGCAAAGAGTAACAAAAATTGC 57.970 29.630 0.00 0.00 41.34 3.56
61 62 9.077885 TGGATAACAAAATCTAAAGCAAAGAGT 57.922 29.630 0.00 0.00 0.00 3.24
100 101 9.712122 GCACCGGCATTGGTATTACCATTTTAA 62.712 40.741 16.17 1.60 43.81 1.52
101 102 8.345702 GCACCGGCATTGGTATTACCATTTTA 62.346 42.308 16.17 1.97 43.81 1.52
102 103 7.638129 GCACCGGCATTGGTATTACCATTTT 62.638 44.000 16.17 2.47 43.81 1.82
103 104 6.239143 GCACCGGCATTGGTATTACCATTT 62.239 45.833 16.17 4.87 43.81 2.32
104 105 4.805956 GCACCGGCATTGGTATTACCATT 61.806 47.826 16.17 10.10 43.81 3.16
105 106 3.333974 GCACCGGCATTGGTATTACCAT 61.334 50.000 16.17 4.47 43.81 3.55
106 107 2.019668 GCACCGGCATTGGTATTACCA 61.020 52.381 11.62 11.62 43.12 3.25
107 108 0.666374 GCACCGGCATTGGTATTACC 59.334 55.000 0.00 5.87 41.38 2.85
119 120 2.804931 GCACGAAATTGCACCGGC 60.805 61.111 0.00 0.00 42.49 6.13
125 126 1.518102 CACAACAGTGCACGAAATTGC 59.482 47.619 12.01 0.00 43.31 3.56
136 137 1.627879 AAAACTTGCGCACAACAGTG 58.372 45.000 11.12 0.00 36.35 3.66
137 138 2.362169 AAAAACTTGCGCACAACAGT 57.638 40.000 11.12 8.42 0.00 3.55
138 139 4.259770 CCTTTAAAAACTTGCGCACAACAG 60.260 41.667 11.12 7.60 0.00 3.16
139 140 3.614616 CCTTTAAAAACTTGCGCACAACA 59.385 39.130 11.12 0.00 0.00 3.33
140 141 3.615056 ACCTTTAAAAACTTGCGCACAAC 59.385 39.130 11.12 0.00 0.00 3.32
141 142 3.851098 ACCTTTAAAAACTTGCGCACAA 58.149 36.364 11.12 0.00 0.00 3.33
142 143 3.512033 ACCTTTAAAAACTTGCGCACA 57.488 38.095 11.12 0.00 0.00 4.57
143 144 4.850859 AAACCTTTAAAAACTTGCGCAC 57.149 36.364 11.12 0.00 0.00 5.34
144 145 5.639931 AGAAAAACCTTTAAAAACTTGCGCA 59.360 32.000 5.66 5.66 0.00 6.09
145 146 6.102006 AGAAAAACCTTTAAAAACTTGCGC 57.898 33.333 0.00 0.00 0.00 6.09
146 147 9.843874 GATAAGAAAAACCTTTAAAAACTTGCG 57.156 29.630 0.00 0.00 0.00 4.85
159 160 9.429109 TGAAACCCTTTAAGATAAGAAAAACCT 57.571 29.630 0.00 0.00 0.00 3.50
202 203 9.639601 CTTTTAGAAGAGACAAAACAAAAGGTT 57.360 29.630 0.00 0.00 36.77 3.50
203 204 8.251026 CCTTTTAGAAGAGACAAAACAAAAGGT 58.749 33.333 12.26 0.00 42.71 3.50
204 205 7.706607 CCCTTTTAGAAGAGACAAAACAAAAGG 59.293 37.037 13.15 13.15 45.25 3.11
205 206 8.251026 ACCCTTTTAGAAGAGACAAAACAAAAG 58.749 33.333 0.00 0.00 34.71 2.27
206 207 8.129496 ACCCTTTTAGAAGAGACAAAACAAAA 57.871 30.769 0.00 0.00 34.71 2.44
207 208 7.712204 ACCCTTTTAGAAGAGACAAAACAAA 57.288 32.000 0.00 0.00 34.71 2.83
208 209 8.810990 TTACCCTTTTAGAAGAGACAAAACAA 57.189 30.769 0.00 0.00 34.71 2.83
209 210 8.990163 ATTACCCTTTTAGAAGAGACAAAACA 57.010 30.769 0.00 0.00 34.71 2.83
213 214 9.416284 ACAAAATTACCCTTTTAGAAGAGACAA 57.584 29.630 0.00 0.00 34.71 3.18
214 215 8.990163 ACAAAATTACCCTTTTAGAAGAGACA 57.010 30.769 0.00 0.00 34.71 3.41
227 228 9.679661 ACAAAAAGAATGAAACAAAATTACCCT 57.320 25.926 0.00 0.00 0.00 4.34
228 229 9.929722 GACAAAAAGAATGAAACAAAATTACCC 57.070 29.630 0.00 0.00 0.00 3.69
237 238 9.212641 TGAATTTGTGACAAAAAGAATGAAACA 57.787 25.926 15.31 1.58 0.00 2.83
241 242 9.820725 AGAATGAATTTGTGACAAAAAGAATGA 57.179 25.926 15.31 0.00 0.00 2.57
244 245 9.097257 GGAAGAATGAATTTGTGACAAAAAGAA 57.903 29.630 15.31 2.01 0.00 2.52
245 246 8.256605 TGGAAGAATGAATTTGTGACAAAAAGA 58.743 29.630 15.31 2.00 0.00 2.52
246 247 8.330302 GTGGAAGAATGAATTTGTGACAAAAAG 58.670 33.333 15.31 0.00 0.00 2.27
247 248 7.821359 TGTGGAAGAATGAATTTGTGACAAAAA 59.179 29.630 15.31 4.50 0.00 1.94
248 249 7.326454 TGTGGAAGAATGAATTTGTGACAAAA 58.674 30.769 15.31 0.00 0.00 2.44
249 250 6.871844 TGTGGAAGAATGAATTTGTGACAAA 58.128 32.000 13.66 13.66 0.00 2.83
250 251 6.320926 TCTGTGGAAGAATGAATTTGTGACAA 59.679 34.615 0.00 0.00 29.54 3.18
251 252 5.827267 TCTGTGGAAGAATGAATTTGTGACA 59.173 36.000 0.00 0.00 29.54 3.58
252 253 6.317789 TCTGTGGAAGAATGAATTTGTGAC 57.682 37.500 0.00 0.00 29.54 3.67
253 254 6.957920 TTCTGTGGAAGAATGAATTTGTGA 57.042 33.333 0.00 0.00 40.09 3.58
254 255 7.707893 AGTTTTCTGTGGAAGAATGAATTTGTG 59.292 33.333 0.00 0.00 44.46 3.33
255 256 7.785033 AGTTTTCTGTGGAAGAATGAATTTGT 58.215 30.769 0.00 0.00 44.46 2.83
256 257 8.652810 AAGTTTTCTGTGGAAGAATGAATTTG 57.347 30.769 0.00 0.00 44.46 2.32
257 258 8.477256 TGAAGTTTTCTGTGGAAGAATGAATTT 58.523 29.630 0.00 0.00 44.46 1.82
258 259 8.010733 TGAAGTTTTCTGTGGAAGAATGAATT 57.989 30.769 0.00 0.00 44.46 2.17
259 260 7.587037 TGAAGTTTTCTGTGGAAGAATGAAT 57.413 32.000 0.00 0.00 44.46 2.57
260 261 7.587037 ATGAAGTTTTCTGTGGAAGAATGAA 57.413 32.000 0.00 0.00 44.46 2.57
261 262 8.868522 ATATGAAGTTTTCTGTGGAAGAATGA 57.131 30.769 0.00 0.00 44.46 2.57
262 263 9.918630 AAATATGAAGTTTTCTGTGGAAGAATG 57.081 29.630 0.00 0.00 44.46 2.67
326 327 9.372369 CGGTATTGCCCTTAAAAATGAAATAAA 57.628 29.630 0.00 0.00 0.00 1.40
327 328 8.750298 TCGGTATTGCCCTTAAAAATGAAATAA 58.250 29.630 0.00 0.00 0.00 1.40
328 329 8.294954 TCGGTATTGCCCTTAAAAATGAAATA 57.705 30.769 0.00 0.00 0.00 1.40
329 330 7.176589 TCGGTATTGCCCTTAAAAATGAAAT 57.823 32.000 0.00 0.00 0.00 2.17
330 331 6.591750 TCGGTATTGCCCTTAAAAATGAAA 57.408 33.333 0.00 0.00 0.00 2.69
331 332 6.153680 ACATCGGTATTGCCCTTAAAAATGAA 59.846 34.615 0.00 0.00 0.00 2.57
332 333 5.654650 ACATCGGTATTGCCCTTAAAAATGA 59.345 36.000 0.00 0.00 0.00 2.57
333 334 5.901552 ACATCGGTATTGCCCTTAAAAATG 58.098 37.500 0.00 0.00 0.00 2.32
334 335 5.654650 TGACATCGGTATTGCCCTTAAAAAT 59.345 36.000 0.00 0.00 0.00 1.82
335 336 5.010933 TGACATCGGTATTGCCCTTAAAAA 58.989 37.500 0.00 0.00 0.00 1.94
336 337 4.396790 GTGACATCGGTATTGCCCTTAAAA 59.603 41.667 0.00 0.00 0.00 1.52
337 338 3.942748 GTGACATCGGTATTGCCCTTAAA 59.057 43.478 0.00 0.00 0.00 1.52
338 339 3.199071 AGTGACATCGGTATTGCCCTTAA 59.801 43.478 0.00 0.00 0.00 1.85
339 340 2.769663 AGTGACATCGGTATTGCCCTTA 59.230 45.455 0.00 0.00 0.00 2.69
340 341 1.559682 AGTGACATCGGTATTGCCCTT 59.440 47.619 0.00 0.00 0.00 3.95
341 342 1.204146 AGTGACATCGGTATTGCCCT 58.796 50.000 0.00 0.00 0.00 5.19
342 343 2.902705 TAGTGACATCGGTATTGCCC 57.097 50.000 0.00 0.00 0.00 5.36
343 344 3.746492 GGATTAGTGACATCGGTATTGCC 59.254 47.826 0.00 0.00 0.00 4.52
344 345 4.377021 TGGATTAGTGACATCGGTATTGC 58.623 43.478 0.00 0.00 0.00 3.56
345 346 7.872993 AGTAATGGATTAGTGACATCGGTATTG 59.127 37.037 0.00 0.00 0.00 1.90
346 347 7.963532 AGTAATGGATTAGTGACATCGGTATT 58.036 34.615 0.00 0.00 0.00 1.89
347 348 7.540474 AGTAATGGATTAGTGACATCGGTAT 57.460 36.000 0.00 0.00 0.00 2.73
348 349 6.971726 AGTAATGGATTAGTGACATCGGTA 57.028 37.500 0.00 0.00 0.00 4.02
349 350 5.871396 AGTAATGGATTAGTGACATCGGT 57.129 39.130 0.00 0.00 0.00 4.69
350 351 7.553881 AAAAGTAATGGATTAGTGACATCGG 57.446 36.000 0.00 0.00 0.00 4.18
388 389 9.669353 AATATATGCTAGTGAAATTTTCGCAAG 57.331 29.630 21.26 11.17 42.49 4.01
400 401 9.890629 CCTGGCTAAATAAATATATGCTAGTGA 57.109 33.333 0.00 0.00 0.00 3.41
401 402 9.672673 ACCTGGCTAAATAAATATATGCTAGTG 57.327 33.333 0.00 0.00 0.00 2.74
431 432 3.119137 GGCAAATTGAGTCGGGCTAATTT 60.119 43.478 0.00 0.00 34.17 1.82
441 442 4.095483 CCTCACACATAGGCAAATTGAGTC 59.905 45.833 0.00 0.00 0.00 3.36
442 443 4.012374 CCTCACACATAGGCAAATTGAGT 58.988 43.478 0.00 0.00 0.00 3.41
621 635 3.071479 GGACAAGTCGCCTGAAAACATA 58.929 45.455 0.00 0.00 0.00 2.29
624 638 0.591659 GGGACAAGTCGCCTGAAAAC 59.408 55.000 6.03 0.00 36.65 2.43
705 747 0.035458 GGATCCTTATCGGCTGGTGG 59.965 60.000 3.84 0.00 32.44 4.61
707 749 1.625818 GATGGATCCTTATCGGCTGGT 59.374 52.381 14.23 0.00 32.44 4.00
723 767 2.067091 GATGTGGCGTGCATGGATGG 62.067 60.000 8.27 0.00 0.00 3.51
744 788 6.049790 ACGGTAATGAGGAGAATTAAGCTTC 58.950 40.000 0.00 0.00 0.00 3.86
753 1115 4.341487 TCTCTTGACGGTAATGAGGAGAA 58.659 43.478 8.18 0.00 0.00 2.87
815 1177 7.547722 GGTTCTTGTGGTTTGTTTATTTCTTGT 59.452 33.333 0.00 0.00 0.00 3.16
1281 1714 0.687757 TGGAGTAGAGCAGCCGGATT 60.688 55.000 5.05 0.00 0.00 3.01
1290 1723 1.663173 GCCGGAGATGGAGTAGAGC 59.337 63.158 5.05 0.00 0.00 4.09
1315 1748 0.106469 TCCTCGATGTCCTCCTCCAG 60.106 60.000 0.00 0.00 0.00 3.86
1416 1849 2.265739 GTGCAGCGGTGGAGATCA 59.734 61.111 17.54 1.97 0.00 2.92
1716 2152 2.738643 CGTCAATATCTCCGTTGCCAGT 60.739 50.000 0.00 0.00 0.00 4.00
1722 2158 0.874607 GCGGCGTCAATATCTCCGTT 60.875 55.000 9.37 0.00 41.89 4.44
1869 2305 2.227757 TCATGGGGTTCAGCCGGAA 61.228 57.895 5.05 0.00 38.44 4.30
1877 2313 1.450312 CGAGCCTGTCATGGGGTTC 60.450 63.158 0.00 0.29 34.45 3.62
1880 2316 4.864334 GGCGAGCCTGTCATGGGG 62.864 72.222 6.90 0.00 0.00 4.96
1930 2366 9.809096 CAGATTATTCAGACTGTGTACACTTAT 57.191 33.333 25.60 11.70 0.00 1.73
2118 2558 4.363999 ACTAGAGAGCGAACATATGCAAC 58.636 43.478 1.58 0.00 0.00 4.17
2120 2560 3.885901 AGACTAGAGAGCGAACATATGCA 59.114 43.478 1.58 0.00 0.00 3.96
2121 2561 4.023622 TCAGACTAGAGAGCGAACATATGC 60.024 45.833 1.58 0.00 0.00 3.14
2122 2562 5.681337 TCAGACTAGAGAGCGAACATATG 57.319 43.478 0.00 0.00 0.00 1.78
2123 2563 5.414454 GGATCAGACTAGAGAGCGAACATAT 59.586 44.000 0.00 0.00 0.00 1.78
2124 2564 4.757657 GGATCAGACTAGAGAGCGAACATA 59.242 45.833 0.00 0.00 0.00 2.29
2125 2565 3.568007 GGATCAGACTAGAGAGCGAACAT 59.432 47.826 0.00 0.00 0.00 2.71
2126 2566 2.946329 GGATCAGACTAGAGAGCGAACA 59.054 50.000 0.00 0.00 0.00 3.18
2127 2567 2.032377 CGGATCAGACTAGAGAGCGAAC 60.032 54.545 0.00 0.00 0.00 3.95
2128 2568 2.214347 CGGATCAGACTAGAGAGCGAA 58.786 52.381 0.00 0.00 0.00 4.70
2129 2569 1.139256 ACGGATCAGACTAGAGAGCGA 59.861 52.381 0.00 0.00 0.00 4.93
2389 2840 0.383368 CGTACGCGACCAAACCAAAC 60.383 55.000 15.93 0.00 41.33 2.93
2482 2961 4.105486 CGATCAGATTAGAACAGAACGCA 58.895 43.478 0.00 0.00 0.00 5.24
2483 2962 3.487574 CCGATCAGATTAGAACAGAACGC 59.512 47.826 0.00 0.00 0.00 4.84
2484 2963 3.487574 GCCGATCAGATTAGAACAGAACG 59.512 47.826 0.00 0.00 0.00 3.95
2485 2964 3.487574 CGCCGATCAGATTAGAACAGAAC 59.512 47.826 0.00 0.00 0.00 3.01
2486 2965 3.490933 CCGCCGATCAGATTAGAACAGAA 60.491 47.826 0.00 0.00 0.00 3.02
2487 2966 2.034685 CCGCCGATCAGATTAGAACAGA 59.965 50.000 0.00 0.00 0.00 3.41
2488 2967 2.398498 CCGCCGATCAGATTAGAACAG 58.602 52.381 0.00 0.00 0.00 3.16
2489 2968 1.068588 CCCGCCGATCAGATTAGAACA 59.931 52.381 0.00 0.00 0.00 3.18
2490 2969 1.605712 CCCCGCCGATCAGATTAGAAC 60.606 57.143 0.00 0.00 0.00 3.01
2491 2970 0.679505 CCCCGCCGATCAGATTAGAA 59.320 55.000 0.00 0.00 0.00 2.10
2492 2971 1.185618 CCCCCGCCGATCAGATTAGA 61.186 60.000 0.00 0.00 0.00 2.10
2493 2972 1.293498 CCCCCGCCGATCAGATTAG 59.707 63.158 0.00 0.00 0.00 1.73
2494 2973 2.879233 GCCCCCGCCGATCAGATTA 61.879 63.158 0.00 0.00 0.00 1.75
2495 2974 4.256180 GCCCCCGCCGATCAGATT 62.256 66.667 0.00 0.00 0.00 2.40
2568 3047 1.751927 CCCTGTTCCCATCAGCAGC 60.752 63.158 0.00 0.00 0.00 5.25
2572 3051 2.124570 CCGCCCTGTTCCCATCAG 60.125 66.667 0.00 0.00 0.00 2.90
2592 3071 0.739813 CCGTCTCAAAAGCCTACCGG 60.740 60.000 0.00 0.00 0.00 5.28
2593 3072 0.739813 CCCGTCTCAAAAGCCTACCG 60.740 60.000 0.00 0.00 0.00 4.02
2594 3073 1.025113 GCCCGTCTCAAAAGCCTACC 61.025 60.000 0.00 0.00 0.00 3.18
2595 3074 0.036294 AGCCCGTCTCAAAAGCCTAC 60.036 55.000 0.00 0.00 0.00 3.18
2596 3075 1.206371 GTAGCCCGTCTCAAAAGCCTA 59.794 52.381 0.00 0.00 0.00 3.93
2597 3076 0.036294 GTAGCCCGTCTCAAAAGCCT 60.036 55.000 0.00 0.00 0.00 4.58
2598 3077 0.321298 TGTAGCCCGTCTCAAAAGCC 60.321 55.000 0.00 0.00 0.00 4.35
2632 3111 2.624364 GGTAAAAAGAAAACGGCCTCCA 59.376 45.455 0.00 0.00 0.00 3.86
2641 3120 9.801873 CTGACTCAAGAAATGGTAAAAAGAAAA 57.198 29.630 0.00 0.00 0.00 2.29
2645 3124 9.007901 AGATCTGACTCAAGAAATGGTAAAAAG 57.992 33.333 0.00 0.00 0.00 2.27
2646 3125 8.786898 CAGATCTGACTCAAGAAATGGTAAAAA 58.213 33.333 18.34 0.00 0.00 1.94
2647 3126 8.156820 TCAGATCTGACTCAAGAAATGGTAAAA 58.843 33.333 21.67 0.00 34.14 1.52
2648 3127 7.679783 TCAGATCTGACTCAAGAAATGGTAAA 58.320 34.615 21.67 0.00 34.14 2.01
2649 3128 7.244886 TCAGATCTGACTCAAGAAATGGTAA 57.755 36.000 21.67 0.00 34.14 2.85
2650 3129 6.857437 TCAGATCTGACTCAAGAAATGGTA 57.143 37.500 21.67 0.00 34.14 3.25
2651 3130 5.752036 TCAGATCTGACTCAAGAAATGGT 57.248 39.130 21.67 0.00 34.14 3.55
2652 3131 5.759273 GGATCAGATCTGACTCAAGAAATGG 59.241 44.000 27.37 0.00 43.11 3.16
2653 3132 6.480651 CAGGATCAGATCTGACTCAAGAAATG 59.519 42.308 27.37 11.75 43.11 2.32
2654 3133 6.408320 CCAGGATCAGATCTGACTCAAGAAAT 60.408 42.308 27.37 8.48 43.11 2.17
2655 3134 5.105023 CCAGGATCAGATCTGACTCAAGAAA 60.105 44.000 27.37 2.31 43.11 2.52
2656 3135 4.405036 CCAGGATCAGATCTGACTCAAGAA 59.595 45.833 27.37 3.10 43.11 2.52
2657 3136 3.959449 CCAGGATCAGATCTGACTCAAGA 59.041 47.826 27.37 3.90 43.11 3.02
2658 3137 3.705579 ACCAGGATCAGATCTGACTCAAG 59.294 47.826 27.37 17.67 43.11 3.02
2659 3138 3.717576 ACCAGGATCAGATCTGACTCAA 58.282 45.455 27.37 5.48 43.11 3.02
2660 3139 3.395054 ACCAGGATCAGATCTGACTCA 57.605 47.619 27.37 5.89 43.11 3.41
2661 3140 3.243367 CGAACCAGGATCAGATCTGACTC 60.243 52.174 27.37 22.25 43.11 3.36
2662 3141 2.692557 CGAACCAGGATCAGATCTGACT 59.307 50.000 27.37 17.71 43.11 3.41
2663 3142 2.690497 TCGAACCAGGATCAGATCTGAC 59.310 50.000 27.37 19.35 43.11 3.51
2664 3143 3.018423 TCGAACCAGGATCAGATCTGA 57.982 47.619 27.03 27.03 44.59 3.27
2665 3144 3.382865 TCTTCGAACCAGGATCAGATCTG 59.617 47.826 17.07 17.07 0.00 2.90
2666 3145 3.636679 TCTTCGAACCAGGATCAGATCT 58.363 45.455 10.36 0.00 0.00 2.75
2667 3146 4.392921 TTCTTCGAACCAGGATCAGATC 57.607 45.455 1.18 1.18 0.00 2.75
2668 3147 4.826274 TTTCTTCGAACCAGGATCAGAT 57.174 40.909 0.00 0.00 0.00 2.90
2669 3148 4.826274 ATTTCTTCGAACCAGGATCAGA 57.174 40.909 0.00 0.00 0.00 3.27
2670 3149 5.446473 CGAAATTTCTTCGAACCAGGATCAG 60.446 44.000 15.92 0.00 43.97 2.90
2671 3150 4.391830 CGAAATTTCTTCGAACCAGGATCA 59.608 41.667 15.92 0.00 43.97 2.92
2672 3151 4.201822 CCGAAATTTCTTCGAACCAGGATC 60.202 45.833 15.92 0.00 43.97 3.36
2673 3152 3.689649 CCGAAATTTCTTCGAACCAGGAT 59.310 43.478 15.92 0.00 43.97 3.24
2674 3153 3.071479 CCGAAATTTCTTCGAACCAGGA 58.929 45.455 15.92 0.00 43.97 3.86
2675 3154 3.071479 TCCGAAATTTCTTCGAACCAGG 58.929 45.455 15.92 6.62 43.97 4.45
2676 3155 4.742438 TTCCGAAATTTCTTCGAACCAG 57.258 40.909 15.92 0.00 43.97 4.00
2677 3156 5.001232 AGATTCCGAAATTTCTTCGAACCA 58.999 37.500 15.92 0.00 43.97 3.67
2678 3157 5.121768 TCAGATTCCGAAATTTCTTCGAACC 59.878 40.000 15.92 6.27 43.97 3.62
2679 3158 6.016111 GTCAGATTCCGAAATTTCTTCGAAC 58.984 40.000 15.92 9.11 43.97 3.95
2680 3159 5.121768 GGTCAGATTCCGAAATTTCTTCGAA 59.878 40.000 15.92 13.64 43.97 3.71
2681 3160 4.630069 GGTCAGATTCCGAAATTTCTTCGA 59.370 41.667 15.92 6.09 43.97 3.71
2682 3161 4.898370 GGTCAGATTCCGAAATTTCTTCG 58.102 43.478 15.92 3.89 41.21 3.79
2694 3173 3.370061 CGGTAGAAAAACGGTCAGATTCC 59.630 47.826 0.00 0.00 0.00 3.01
2695 3174 3.992427 ACGGTAGAAAAACGGTCAGATTC 59.008 43.478 0.00 0.00 0.00 2.52
2696 3175 3.992427 GACGGTAGAAAAACGGTCAGATT 59.008 43.478 9.09 0.00 44.61 2.40
2697 3176 3.582780 GACGGTAGAAAAACGGTCAGAT 58.417 45.455 9.09 0.00 44.61 2.90
2698 3177 2.605338 CGACGGTAGAAAAACGGTCAGA 60.605 50.000 12.99 0.00 45.15 3.27
2699 3178 1.717645 CGACGGTAGAAAAACGGTCAG 59.282 52.381 12.99 4.69 45.15 3.51
2700 3179 1.336440 TCGACGGTAGAAAAACGGTCA 59.664 47.619 12.99 1.26 45.15 4.02
2701 3180 1.981533 CTCGACGGTAGAAAAACGGTC 59.018 52.381 0.00 5.03 42.87 4.79
2702 3181 1.336240 CCTCGACGGTAGAAAAACGGT 60.336 52.381 0.00 0.00 35.83 4.83
2703 3182 1.343506 CCTCGACGGTAGAAAAACGG 58.656 55.000 0.00 0.00 0.00 4.44
2704 3183 0.712222 GCCTCGACGGTAGAAAAACG 59.288 55.000 0.00 0.00 34.25 3.60
2705 3184 1.073964 GGCCTCGACGGTAGAAAAAC 58.926 55.000 0.00 0.00 34.25 2.43
2706 3185 0.680618 TGGCCTCGACGGTAGAAAAA 59.319 50.000 3.32 0.00 34.25 1.94
2707 3186 0.899720 ATGGCCTCGACGGTAGAAAA 59.100 50.000 3.32 0.00 34.25 2.29
2708 3187 0.458669 GATGGCCTCGACGGTAGAAA 59.541 55.000 3.32 0.00 34.25 2.52
2709 3188 2.112898 GATGGCCTCGACGGTAGAA 58.887 57.895 3.32 0.00 34.25 2.10
2710 3189 3.837578 GATGGCCTCGACGGTAGA 58.162 61.111 3.32 0.00 34.25 2.59
2719 3198 1.608283 GCTTGTATACCCGATGGCCTC 60.608 57.143 3.32 0.00 33.59 4.70
2720 3199 0.396811 GCTTGTATACCCGATGGCCT 59.603 55.000 3.32 0.00 33.59 5.19
2721 3200 0.605589 GGCTTGTATACCCGATGGCC 60.606 60.000 0.00 0.00 33.59 5.36
2722 3201 0.396811 AGGCTTGTATACCCGATGGC 59.603 55.000 0.00 0.00 33.59 4.40
2723 3202 2.028385 GGTAGGCTTGTATACCCGATGG 60.028 54.545 0.00 0.00 36.26 3.51
2724 3203 2.352421 CGGTAGGCTTGTATACCCGATG 60.352 54.545 8.30 0.00 38.60 3.84
2725 3204 1.891150 CGGTAGGCTTGTATACCCGAT 59.109 52.381 8.30 0.00 38.60 4.18
2726 3205 1.321474 CGGTAGGCTTGTATACCCGA 58.679 55.000 8.30 0.00 38.60 5.14
2727 3206 1.000938 GACGGTAGGCTTGTATACCCG 60.001 57.143 11.43 11.43 38.60 5.28
2728 3207 2.034124 TGACGGTAGGCTTGTATACCC 58.966 52.381 0.00 0.00 38.60 3.69
2729 3208 3.492137 CCTTGACGGTAGGCTTGTATACC 60.492 52.174 0.00 0.00 38.47 2.73
2730 3209 3.131755 ACCTTGACGGTAGGCTTGTATAC 59.868 47.826 0.00 0.00 46.73 1.47
2731 3210 3.368248 ACCTTGACGGTAGGCTTGTATA 58.632 45.455 0.00 0.00 46.73 1.47
2732 3211 2.185387 ACCTTGACGGTAGGCTTGTAT 58.815 47.619 0.00 0.00 46.73 2.29
2733 3212 1.636148 ACCTTGACGGTAGGCTTGTA 58.364 50.000 0.00 0.00 46.73 2.41
2734 3213 2.448749 ACCTTGACGGTAGGCTTGT 58.551 52.632 0.00 0.00 46.73 3.16
2743 3222 3.411351 CGCCACGAACCTTGACGG 61.411 66.667 0.00 0.00 39.35 4.79
2744 3223 2.752322 TACCGCCACGAACCTTGACG 62.752 60.000 0.00 0.00 0.00 4.35
2745 3224 1.005867 TACCGCCACGAACCTTGAC 60.006 57.895 0.00 0.00 0.00 3.18
2746 3225 1.180456 TCTACCGCCACGAACCTTGA 61.180 55.000 0.00 0.00 0.00 3.02
2747 3226 1.012486 GTCTACCGCCACGAACCTTG 61.012 60.000 0.00 0.00 0.00 3.61
2748 3227 1.291272 GTCTACCGCCACGAACCTT 59.709 57.895 0.00 0.00 0.00 3.50
2749 3228 1.466025 TTGTCTACCGCCACGAACCT 61.466 55.000 0.00 0.00 0.00 3.50
2750 3229 1.005867 TTGTCTACCGCCACGAACC 60.006 57.895 0.00 0.00 0.00 3.62
2751 3230 0.319297 AGTTGTCTACCGCCACGAAC 60.319 55.000 0.00 0.00 0.00 3.95
2752 3231 0.390124 AAGTTGTCTACCGCCACGAA 59.610 50.000 0.00 0.00 0.00 3.85
2753 3232 1.246649 TAAGTTGTCTACCGCCACGA 58.753 50.000 0.00 0.00 0.00 4.35
2754 3233 2.190981 GATAAGTTGTCTACCGCCACG 58.809 52.381 0.00 0.00 0.00 4.94
2755 3234 2.093869 TGGATAAGTTGTCTACCGCCAC 60.094 50.000 0.00 0.00 0.00 5.01
2756 3235 2.093869 GTGGATAAGTTGTCTACCGCCA 60.094 50.000 4.99 0.00 0.00 5.69
2757 3236 2.547826 GTGGATAAGTTGTCTACCGCC 58.452 52.381 4.99 0.00 0.00 6.13
2758 3237 2.159338 TCGTGGATAAGTTGTCTACCGC 60.159 50.000 9.93 0.00 0.00 5.68
2759 3238 3.770263 TCGTGGATAAGTTGTCTACCG 57.230 47.619 9.93 6.21 0.00 4.02
2760 3239 5.232463 TGTTTCGTGGATAAGTTGTCTACC 58.768 41.667 9.93 0.00 0.00 3.18
2761 3240 6.347160 GGTTGTTTCGTGGATAAGTTGTCTAC 60.347 42.308 6.11 6.11 0.00 2.59
2762 3241 5.697633 GGTTGTTTCGTGGATAAGTTGTCTA 59.302 40.000 0.00 0.00 0.00 2.59
2763 3242 4.514066 GGTTGTTTCGTGGATAAGTTGTCT 59.486 41.667 0.00 0.00 0.00 3.41
2764 3243 4.514066 AGGTTGTTTCGTGGATAAGTTGTC 59.486 41.667 0.00 0.00 0.00 3.18
2765 3244 4.457466 AGGTTGTTTCGTGGATAAGTTGT 58.543 39.130 0.00 0.00 0.00 3.32
2766 3245 4.377022 CGAGGTTGTTTCGTGGATAAGTTG 60.377 45.833 0.00 0.00 33.57 3.16
2767 3246 3.744426 CGAGGTTGTTTCGTGGATAAGTT 59.256 43.478 0.00 0.00 33.57 2.66
2768 3247 3.323243 CGAGGTTGTTTCGTGGATAAGT 58.677 45.455 0.00 0.00 33.57 2.24
2769 3248 2.093783 GCGAGGTTGTTTCGTGGATAAG 59.906 50.000 0.00 0.00 40.08 1.73
2770 3249 2.070783 GCGAGGTTGTTTCGTGGATAA 58.929 47.619 0.00 0.00 40.08 1.75
2771 3250 1.673626 GGCGAGGTTGTTTCGTGGATA 60.674 52.381 0.00 0.00 40.08 2.59
2772 3251 0.953960 GGCGAGGTTGTTTCGTGGAT 60.954 55.000 0.00 0.00 40.08 3.41
2773 3252 1.595929 GGCGAGGTTGTTTCGTGGA 60.596 57.895 0.00 0.00 40.08 4.02
2774 3253 1.890041 TGGCGAGGTTGTTTCGTGG 60.890 57.895 0.00 0.00 40.08 4.94
2775 3254 1.278637 GTGGCGAGGTTGTTTCGTG 59.721 57.895 0.00 0.00 40.08 4.35
2776 3255 2.241880 CGTGGCGAGGTTGTTTCGT 61.242 57.895 0.00 0.00 40.08 3.85
2777 3256 1.492319 TTCGTGGCGAGGTTGTTTCG 61.492 55.000 0.00 0.00 37.14 3.46
2778 3257 0.658897 TTTCGTGGCGAGGTTGTTTC 59.341 50.000 0.00 0.00 37.14 2.78
2779 3258 0.379316 GTTTCGTGGCGAGGTTGTTT 59.621 50.000 0.00 0.00 37.14 2.83
2780 3259 0.745128 TGTTTCGTGGCGAGGTTGTT 60.745 50.000 0.00 0.00 37.14 2.83
2781 3260 1.153329 TGTTTCGTGGCGAGGTTGT 60.153 52.632 0.00 0.00 37.14 3.32
2782 3261 1.569493 CTGTTTCGTGGCGAGGTTG 59.431 57.895 0.00 0.00 37.14 3.77
2783 3262 1.597027 CCTGTTTCGTGGCGAGGTT 60.597 57.895 0.00 0.00 37.14 3.50
2784 3263 2.030562 CCTGTTTCGTGGCGAGGT 59.969 61.111 0.00 0.00 37.14 3.85
2785 3264 3.423154 GCCTGTTTCGTGGCGAGG 61.423 66.667 0.00 0.00 39.71 4.63
2790 3269 3.777925 CGCGAGCCTGTTTCGTGG 61.778 66.667 0.00 0.00 42.92 4.94
2802 3281 4.329697 CCTACCGGCTAGCGCGAG 62.330 72.222 22.12 13.72 36.88 5.03
2812 3291 2.831685 TGCTTATACATGCCTACCGG 57.168 50.000 0.00 0.00 0.00 5.28
2813 3292 4.065088 ACAATGCTTATACATGCCTACCG 58.935 43.478 0.00 0.00 0.00 4.02
2814 3293 7.687941 AATACAATGCTTATACATGCCTACC 57.312 36.000 0.00 0.00 0.00 3.18
2815 3294 8.783093 TCAAATACAATGCTTATACATGCCTAC 58.217 33.333 0.00 0.00 0.00 3.18
2816 3295 8.916628 TCAAATACAATGCTTATACATGCCTA 57.083 30.769 0.00 0.00 0.00 3.93
2817 3296 7.822161 TCAAATACAATGCTTATACATGCCT 57.178 32.000 0.00 0.00 0.00 4.75
2851 3330 3.215975 GGTGCACACCCTACTGTAAAAA 58.784 45.455 20.43 0.00 45.68 1.94
2852 3331 2.853705 GGTGCACACCCTACTGTAAAA 58.146 47.619 20.43 0.00 45.68 1.52
2853 3332 2.554370 GGTGCACACCCTACTGTAAA 57.446 50.000 20.43 0.00 45.68 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.