Multiple sequence alignment - TraesCS3D01G295400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G295400 chr3D 100.000 2356 0 0 765 3120 407748354 407745999 0.000000e+00 4351
1 TraesCS3D01G295400 chr3D 100.000 514 0 0 1 514 407749118 407748605 0.000000e+00 950
2 TraesCS3D01G295400 chr3B 93.640 2154 67 37 787 2920 533454745 533452642 0.000000e+00 3155
3 TraesCS3D01G295400 chr3B 93.452 504 17 6 1 497 533455366 533454872 0.000000e+00 734
4 TraesCS3D01G295400 chr3B 92.771 166 6 2 2936 3101 533452373 533452214 5.200000e-58 235
5 TraesCS3D01G295400 chr3A 91.189 1430 59 45 799 2180 544190631 544192041 0.000000e+00 1881
6 TraesCS3D01G295400 chr3A 86.885 976 60 27 2174 3113 544193307 544194250 0.000000e+00 1031
7 TraesCS3D01G295400 chr3A 89.306 533 24 11 1 514 544190053 544190571 3.390000e-179 638


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G295400 chr3D 407745999 407749118 3119 True 2650.500000 4351 100.000000 1 3120 2 chr3D.!!$R1 3119
1 TraesCS3D01G295400 chr3B 533452214 533455366 3152 True 1374.666667 3155 93.287667 1 3101 3 chr3B.!!$R1 3100
2 TraesCS3D01G295400 chr3A 544190053 544194250 4197 False 1183.333333 1881 89.126667 1 3113 3 chr3A.!!$F1 3112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 816 1.374252 GTAGTGGTGTGGCCGTCAG 60.374 63.158 0.0 0.0 41.21 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2260 0.7737 AGGGGGTGATCCATCCATCC 60.774 60.0 0.0 0.0 36.11 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 157 3.637297 CCGCTACGGGTCTCTAAAC 57.363 57.895 0.00 0.00 44.15 2.01
291 301 4.944962 TTGCAGATTGAAATCACCGTAG 57.055 40.909 5.86 0.00 37.89 3.51
452 473 2.760092 GGAGTGGCAATGATTTAGGCAA 59.240 45.455 0.00 0.00 39.62 4.52
453 474 3.181483 GGAGTGGCAATGATTTAGGCAAG 60.181 47.826 0.00 0.00 39.62 4.01
454 475 2.762327 AGTGGCAATGATTTAGGCAAGG 59.238 45.455 0.00 0.00 39.62 3.61
458 479 1.413812 CAATGATTTAGGCAAGGGGGC 59.586 52.381 0.00 0.00 43.80 5.80
490 511 6.915843 TCAAAAGCCAAAACGATAAGAGAAAC 59.084 34.615 0.00 0.00 0.00 2.78
498 532 7.112984 CCAAAACGATAAGAGAAACGAAAAAGG 59.887 37.037 0.00 0.00 0.00 3.11
781 815 2.738480 GTAGTGGTGTGGCCGTCA 59.262 61.111 0.00 0.00 41.21 4.35
782 816 1.374252 GTAGTGGTGTGGCCGTCAG 60.374 63.158 0.00 0.00 41.21 3.51
783 817 2.579657 TAGTGGTGTGGCCGTCAGG 61.580 63.158 0.00 0.00 41.21 3.86
784 818 3.936203 GTGGTGTGGCCGTCAGGA 61.936 66.667 0.00 0.00 41.02 3.86
821 855 2.634940 AGCACTGTTGACTGGTGAGTAT 59.365 45.455 10.31 0.00 33.32 2.12
822 856 3.832490 AGCACTGTTGACTGGTGAGTATA 59.168 43.478 10.31 0.00 33.32 1.47
823 857 4.081972 AGCACTGTTGACTGGTGAGTATAG 60.082 45.833 10.31 0.00 33.32 1.31
824 858 4.322049 GCACTGTTGACTGGTGAGTATAGT 60.322 45.833 10.31 0.00 33.32 2.12
825 859 5.105877 GCACTGTTGACTGGTGAGTATAGTA 60.106 44.000 10.31 0.00 33.32 1.82
901 939 2.041755 TGCCCCATACACCATTGTACAA 59.958 45.455 11.41 11.41 41.12 2.41
902 940 3.295973 GCCCCATACACCATTGTACAAT 58.704 45.455 15.47 15.47 41.12 2.71
904 942 4.277423 GCCCCATACACCATTGTACAATAC 59.723 45.833 20.39 0.00 41.12 1.89
905 943 4.513692 CCCCATACACCATTGTACAATACG 59.486 45.833 20.39 15.29 41.12 3.06
906 944 4.513692 CCCATACACCATTGTACAATACGG 59.486 45.833 20.39 19.46 41.12 4.02
907 945 5.361427 CCATACACCATTGTACAATACGGA 58.639 41.667 24.53 13.09 41.12 4.69
908 946 5.465390 CCATACACCATTGTACAATACGGAG 59.535 44.000 24.53 20.16 41.12 4.63
909 947 4.546829 ACACCATTGTACAATACGGAGT 57.453 40.909 24.53 20.67 38.49 3.85
910 948 4.501071 ACACCATTGTACAATACGGAGTC 58.499 43.478 24.53 0.00 36.45 3.36
1029 1072 3.003173 TGAGGTTCTCCCCCAGCG 61.003 66.667 0.00 0.00 0.00 5.18
1154 1201 1.899054 CGGCAGCGAGGGAGATAGA 60.899 63.158 0.00 0.00 0.00 1.98
1188 1235 4.437587 GGGTCGGTCCGGGAGAGA 62.438 72.222 12.29 0.00 37.00 3.10
1234 1281 2.351835 CGATCGGTTCAGTTGAGTGAGT 60.352 50.000 7.38 0.00 0.00 3.41
1236 1283 1.068588 TCGGTTCAGTTGAGTGAGTGG 59.931 52.381 0.00 0.00 0.00 4.00
1237 1284 1.873903 CGGTTCAGTTGAGTGAGTGGG 60.874 57.143 0.00 0.00 0.00 4.61
1389 1436 3.065306 CCTACCCCAAGCACGTCA 58.935 61.111 0.00 0.00 0.00 4.35
1877 1936 9.413734 TCTTCTCCTTCTTCTTCTTTTCATTTT 57.586 29.630 0.00 0.00 0.00 1.82
1993 2064 4.227134 CGAGCATCACCCTCCCCG 62.227 72.222 0.00 0.00 33.17 5.73
2100 2185 5.597182 CCTAATTACAGTAGCTGTGGGACTA 59.403 44.000 11.57 0.00 45.01 2.59
2102 2187 6.561519 AATTACAGTAGCTGTGGGACTAAT 57.438 37.500 11.57 0.52 45.01 1.73
2103 2188 6.561519 ATTACAGTAGCTGTGGGACTAATT 57.438 37.500 11.57 0.00 45.01 1.40
2231 3592 1.926561 CTATGCTCGCACTTGCTACA 58.073 50.000 0.00 0.00 39.32 2.74
2247 3608 6.428159 ACTTGCTACAAGTAAGAACTCCATTG 59.572 38.462 11.10 0.00 39.83 2.82
2310 3676 2.016604 GCCACTGATATTGGTGCGGAA 61.017 52.381 4.20 0.00 36.40 4.30
2406 3772 3.258228 GGAAGCGAGAGAAAGGAGAAAG 58.742 50.000 0.00 0.00 0.00 2.62
2407 3773 3.306433 GGAAGCGAGAGAAAGGAGAAAGT 60.306 47.826 0.00 0.00 0.00 2.66
2552 3918 2.172505 TCCACTAGCAGAGAGAGAGAGG 59.827 54.545 0.00 0.00 0.00 3.69
2553 3919 2.575532 CACTAGCAGAGAGAGAGAGGG 58.424 57.143 0.00 0.00 0.00 4.30
2622 3993 2.124693 CCCAACCACCGTTGCAACT 61.125 57.895 26.09 6.77 46.76 3.16
2758 4146 8.783833 TCCTTTAATGATTTCTCTGTTCTCTG 57.216 34.615 0.00 0.00 0.00 3.35
2759 4147 8.378565 TCCTTTAATGATTTCTCTGTTCTCTGT 58.621 33.333 0.00 0.00 0.00 3.41
2760 4148 9.658799 CCTTTAATGATTTCTCTGTTCTCTGTA 57.341 33.333 0.00 0.00 0.00 2.74
2763 4151 9.605275 TTAATGATTTCTCTGTTCTCTGTATGG 57.395 33.333 0.00 0.00 0.00 2.74
2768 4162 6.716934 TTCTCTGTTCTCTGTATGGGTATC 57.283 41.667 0.00 0.00 0.00 2.24
2791 4185 3.067742 GGTTATGGTTCGCTGCTAGTAGA 59.932 47.826 12.54 0.00 0.00 2.59
2810 4204 6.071984 AGTAGATATGTTGGCTACTAGTGCT 58.928 40.000 5.39 0.00 42.07 4.40
2842 4240 3.279434 GGATTTGACGTAAAGATGGGCT 58.721 45.455 0.00 0.00 0.00 5.19
2870 4273 4.731313 ATGTGTTCCTTCTCCTCCTTTT 57.269 40.909 0.00 0.00 0.00 2.27
2874 4277 5.133941 GTGTTCCTTCTCCTCCTTTTTCTT 58.866 41.667 0.00 0.00 0.00 2.52
2899 4308 4.394712 CGAACGGGAGCAAGGCCT 62.395 66.667 0.00 0.00 0.00 5.19
2900 4309 2.987125 GAACGGGAGCAAGGCCTA 59.013 61.111 5.16 0.00 0.00 3.93
2901 4310 1.153349 GAACGGGAGCAAGGCCTAG 60.153 63.158 5.16 0.00 0.00 3.02
2902 4311 2.595009 GAACGGGAGCAAGGCCTAGG 62.595 65.000 5.16 3.67 0.00 3.02
2903 4312 4.554036 CGGGAGCAAGGCCTAGGC 62.554 72.222 26.55 26.55 41.06 3.93
2913 4322 2.904131 GCCTAGGCCACTCACTCC 59.096 66.667 24.19 0.00 34.56 3.85
3015 4689 5.220381 ACGCATCATATCTTTGGTAGTACG 58.780 41.667 0.00 0.00 0.00 3.67
3016 4690 4.090066 CGCATCATATCTTTGGTAGTACGC 59.910 45.833 0.00 0.00 0.00 4.42
3017 4691 4.389077 GCATCATATCTTTGGTAGTACGCC 59.611 45.833 3.02 3.02 0.00 5.68
3018 4692 4.233123 TCATATCTTTGGTAGTACGCCG 57.767 45.455 5.31 0.00 0.00 6.46
3019 4693 2.497107 TATCTTTGGTAGTACGCCGC 57.503 50.000 5.31 0.00 0.00 6.53
3020 4694 0.822164 ATCTTTGGTAGTACGCCGCT 59.178 50.000 5.31 0.00 0.00 5.52
3021 4695 1.462616 TCTTTGGTAGTACGCCGCTA 58.537 50.000 5.31 0.00 0.00 4.26
3022 4696 2.026641 TCTTTGGTAGTACGCCGCTAT 58.973 47.619 5.31 0.00 0.00 2.97
3023 4697 3.213506 TCTTTGGTAGTACGCCGCTATA 58.786 45.455 5.31 0.00 0.00 1.31
3101 4775 5.801350 TCTCCTTTAATTTGCTCATCACG 57.199 39.130 0.00 0.00 0.00 4.35
3113 4787 6.600246 TTGCTCATCACGTACTAGTAGTAG 57.400 41.667 10.38 2.87 30.12 2.57
3114 4788 5.668471 TGCTCATCACGTACTAGTAGTAGT 58.332 41.667 14.57 14.57 42.49 2.73
3115 4789 5.752472 TGCTCATCACGTACTAGTAGTAGTC 59.248 44.000 13.60 5.52 40.23 2.59
3116 4790 5.984926 GCTCATCACGTACTAGTAGTAGTCT 59.015 44.000 13.60 0.00 40.23 3.24
3117 4791 6.074195 GCTCATCACGTACTAGTAGTAGTCTG 60.074 46.154 13.60 9.94 40.23 3.51
3118 4792 7.105241 TCATCACGTACTAGTAGTAGTCTGA 57.895 40.000 13.60 12.63 40.23 3.27
3119 4793 7.724287 TCATCACGTACTAGTAGTAGTCTGAT 58.276 38.462 13.60 14.06 40.23 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 4.712122 TTGAACCAAAACGAAAGCTCTT 57.288 36.364 0.00 0.00 0.00 2.85
154 157 1.261619 GGCCGCTTGATATGTTTCTCG 59.738 52.381 0.00 0.00 0.00 4.04
454 475 2.360585 CTTTTGAGAGGGGGCCCC 59.639 66.667 35.78 35.78 45.90 5.80
458 479 1.344438 GTTTTGGCTTTTGAGAGGGGG 59.656 52.381 0.00 0.00 0.00 5.40
769 803 3.591254 GAGTCCTGACGGCCACACC 62.591 68.421 2.24 0.00 36.20 4.16
776 810 2.888863 GCTCCTGAGTCCTGACGG 59.111 66.667 0.00 0.00 36.20 4.79
779 813 3.071206 GCCGCTCCTGAGTCCTGA 61.071 66.667 0.00 0.00 0.00 3.86
780 814 3.368190 CTGCCGCTCCTGAGTCCTG 62.368 68.421 0.00 0.00 0.00 3.86
781 815 2.500815 TACTGCCGCTCCTGAGTCCT 62.501 60.000 0.00 0.00 0.00 3.85
782 816 2.010582 CTACTGCCGCTCCTGAGTCC 62.011 65.000 0.00 0.00 0.00 3.85
783 817 1.435515 CTACTGCCGCTCCTGAGTC 59.564 63.158 0.00 0.00 0.00 3.36
784 818 2.716017 GCTACTGCCGCTCCTGAGT 61.716 63.158 0.00 0.00 0.00 3.41
785 819 2.105930 GCTACTGCCGCTCCTGAG 59.894 66.667 0.00 0.00 0.00 3.35
821 855 2.748798 GCTCCTGATCACTCGGGTACTA 60.749 54.545 0.00 0.00 46.61 1.82
822 856 2.024825 GCTCCTGATCACTCGGGTACT 61.025 57.143 0.00 0.00 46.61 2.73
823 857 0.386113 GCTCCTGATCACTCGGGTAC 59.614 60.000 0.00 0.00 46.61 3.34
824 858 0.259065 AGCTCCTGATCACTCGGGTA 59.741 55.000 0.00 0.00 46.61 3.69
825 859 0.259065 TAGCTCCTGATCACTCGGGT 59.741 55.000 0.00 0.00 46.61 5.28
901 939 8.802057 AGGGATACTATATAGAGACTCCGTAT 57.198 38.462 16.79 2.18 0.00 3.06
902 940 9.142014 GTAGGGATACTATATAGAGACTCCGTA 57.858 40.741 16.79 15.71 33.43 4.02
904 942 8.020777 TGTAGGGATACTATATAGAGACTCCG 57.979 42.308 16.79 0.00 33.43 4.63
905 943 7.935210 GCTGTAGGGATACTATATAGAGACTCC 59.065 44.444 16.79 13.99 33.43 3.85
906 944 8.487848 TGCTGTAGGGATACTATATAGAGACTC 58.512 40.741 16.79 6.66 33.43 3.36
907 945 8.395288 TGCTGTAGGGATACTATATAGAGACT 57.605 38.462 16.79 8.95 33.43 3.24
908 946 8.487848 TCTGCTGTAGGGATACTATATAGAGAC 58.512 40.741 16.79 6.53 33.43 3.36
909 947 8.625467 TCTGCTGTAGGGATACTATATAGAGA 57.375 38.462 16.79 4.34 33.43 3.10
910 948 7.444183 GCTCTGCTGTAGGGATACTATATAGAG 59.556 44.444 16.79 1.32 37.23 2.43
1136 1183 1.861542 CTCTATCTCCCTCGCTGCCG 61.862 65.000 0.00 0.00 0.00 5.69
1137 1184 0.538516 TCTCTATCTCCCTCGCTGCC 60.539 60.000 0.00 0.00 0.00 4.85
1139 1186 2.682856 GCTATCTCTATCTCCCTCGCTG 59.317 54.545 0.00 0.00 0.00 5.18
1140 1187 2.679639 CGCTATCTCTATCTCCCTCGCT 60.680 54.545 0.00 0.00 0.00 4.93
1142 1189 2.093394 TCCGCTATCTCTATCTCCCTCG 60.093 54.545 0.00 0.00 0.00 4.63
1144 1191 3.589735 TCTTCCGCTATCTCTATCTCCCT 59.410 47.826 0.00 0.00 0.00 4.20
1145 1192 3.945285 CTCTTCCGCTATCTCTATCTCCC 59.055 52.174 0.00 0.00 0.00 4.30
1146 1193 3.377172 GCTCTTCCGCTATCTCTATCTCC 59.623 52.174 0.00 0.00 0.00 3.71
1147 1194 4.006989 TGCTCTTCCGCTATCTCTATCTC 58.993 47.826 0.00 0.00 0.00 2.75
1154 1201 0.755686 CCCTTGCTCTTCCGCTATCT 59.244 55.000 0.00 0.00 0.00 1.98
1188 1235 0.964358 CGGTCGGTCAACCTCTACCT 60.964 60.000 11.25 0.00 37.15 3.08
1234 1281 1.500474 GATGGTCTCCATGACTCCCA 58.500 55.000 5.98 0.00 45.26 4.37
1236 1283 0.390860 CGGATGGTCTCCATGACTCC 59.609 60.000 5.98 1.53 45.26 3.85
1237 1284 0.390860 CCGGATGGTCTCCATGACTC 59.609 60.000 5.98 0.00 45.26 3.36
1599 1652 1.308326 CGGACTCCTTCCTCCTCCT 59.692 63.158 0.00 0.00 43.25 3.69
1688 1747 1.593296 GGTACCTCTCGTTCGCCAGT 61.593 60.000 4.06 0.00 0.00 4.00
1849 1908 8.620116 ATGAAAAGAAGAAGAAGGAGAAGAAG 57.380 34.615 0.00 0.00 0.00 2.85
1850 1909 8.986929 AATGAAAAGAAGAAGAAGGAGAAGAA 57.013 30.769 0.00 0.00 0.00 2.52
1851 1910 8.986929 AAATGAAAAGAAGAAGAAGGAGAAGA 57.013 30.769 0.00 0.00 0.00 2.87
1877 1936 8.850156 CAGAAACTAGAGAATCCAAAGGAAAAA 58.150 33.333 0.00 0.00 34.34 1.94
1878 1937 7.998964 ACAGAAACTAGAGAATCCAAAGGAAAA 59.001 33.333 0.00 0.00 34.34 2.29
1887 1946 8.268605 AGGGAATTAACAGAAACTAGAGAATCC 58.731 37.037 0.00 0.00 33.66 3.01
2100 2185 2.936498 ACGTAGATTGCGCTGCTTAATT 59.064 40.909 9.73 0.00 0.00 1.40
2102 2187 2.004583 ACGTAGATTGCGCTGCTTAA 57.995 45.000 9.73 0.00 0.00 1.85
2103 2188 1.924524 GAACGTAGATTGCGCTGCTTA 59.075 47.619 9.73 0.00 0.00 3.09
2171 2260 0.773700 AGGGGGTGATCCATCCATCC 60.774 60.000 0.00 0.00 36.11 3.51
2231 3592 8.712228 AGGAAAAATCAATGGAGTTCTTACTT 57.288 30.769 0.00 0.00 33.84 2.24
2310 3676 9.892130 ACGGAATTCTAAGATTCTCTTTACAAT 57.108 29.630 5.23 0.00 37.89 2.71
2406 3772 2.580867 CGCCGCTCTGCTCACTAC 60.581 66.667 0.00 0.00 0.00 2.73
2407 3773 2.750237 TCGCCGCTCTGCTCACTA 60.750 61.111 0.00 0.00 0.00 2.74
2552 3918 1.646189 CACGGCTTAAAGCTCTCTCC 58.354 55.000 0.00 0.00 41.99 3.71
2553 3919 1.066787 ACCACGGCTTAAAGCTCTCTC 60.067 52.381 0.00 0.00 41.99 3.20
2622 3993 6.847956 TTGTCGCTTTAGTTTTTAGCAGTA 57.152 33.333 0.00 0.00 34.62 2.74
2641 4017 1.978580 TCTCCCTCCTTGGTCTTTGTC 59.021 52.381 0.00 0.00 0.00 3.18
2758 4146 4.240096 CGAACCATAACCGATACCCATAC 58.760 47.826 0.00 0.00 0.00 2.39
2759 4147 3.306225 GCGAACCATAACCGATACCCATA 60.306 47.826 0.00 0.00 0.00 2.74
2760 4148 2.549349 GCGAACCATAACCGATACCCAT 60.549 50.000 0.00 0.00 0.00 4.00
2761 4149 1.202557 GCGAACCATAACCGATACCCA 60.203 52.381 0.00 0.00 0.00 4.51
2762 4150 1.069668 AGCGAACCATAACCGATACCC 59.930 52.381 0.00 0.00 0.00 3.69
2763 4151 2.132762 CAGCGAACCATAACCGATACC 58.867 52.381 0.00 0.00 0.00 2.73
2768 4162 1.209128 CTAGCAGCGAACCATAACCG 58.791 55.000 0.00 0.00 0.00 4.44
2791 4185 5.126067 CCAAAGCACTAGTAGCCAACATAT 58.874 41.667 11.98 0.00 0.00 1.78
2810 4204 2.814919 ACGTCAAATCCATAACGCCAAA 59.185 40.909 0.00 0.00 38.64 3.28
2842 4240 3.576982 AGGAGAAGGAACACATTGTACGA 59.423 43.478 0.00 0.00 0.00 3.43
2870 4273 1.897133 TCCCGTTCGATGGAAGAAGAA 59.103 47.619 5.81 0.00 31.49 2.52
2874 4277 1.254975 TGCTCCCGTTCGATGGAAGA 61.255 55.000 5.81 0.00 31.49 2.87
2899 4308 1.001760 GGAGGGAGTGAGTGGCCTA 59.998 63.158 3.32 0.00 0.00 3.93
2900 4309 2.284995 GGAGGGAGTGAGTGGCCT 60.285 66.667 3.32 0.00 0.00 5.19
2901 4310 3.403558 GGGAGGGAGTGAGTGGCC 61.404 72.222 0.00 0.00 0.00 5.36
2902 4311 2.284995 AGGGAGGGAGTGAGTGGC 60.285 66.667 0.00 0.00 0.00 5.01
2903 4312 1.687493 GGAGGGAGGGAGTGAGTGG 60.687 68.421 0.00 0.00 0.00 4.00
2904 4313 1.687493 GGGAGGGAGGGAGTGAGTG 60.687 68.421 0.00 0.00 0.00 3.51
2905 4314 1.864559 AGGGAGGGAGGGAGTGAGT 60.865 63.158 0.00 0.00 0.00 3.41
2906 4315 1.075600 GAGGGAGGGAGGGAGTGAG 60.076 68.421 0.00 0.00 0.00 3.51
2907 4316 2.637640 GGAGGGAGGGAGGGAGTGA 61.638 68.421 0.00 0.00 0.00 3.41
2908 4317 2.041405 GGAGGGAGGGAGGGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
2909 4318 3.369388 GGGAGGGAGGGAGGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
2910 4319 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
2911 4320 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
2912 4321 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
2913 4322 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
3015 4689 0.809385 TGCTCCTCGTATATAGCGGC 59.191 55.000 0.00 0.00 37.80 6.53
3016 4690 3.243336 GTTTGCTCCTCGTATATAGCGG 58.757 50.000 0.00 0.00 37.80 5.52
3017 4691 3.897325 TGTTTGCTCCTCGTATATAGCG 58.103 45.455 0.00 0.00 37.80 4.26
3018 4692 6.159988 AGATTGTTTGCTCCTCGTATATAGC 58.840 40.000 0.00 0.00 35.51 2.97
3019 4693 8.297426 TGTAGATTGTTTGCTCCTCGTATATAG 58.703 37.037 0.00 0.00 0.00 1.31
3020 4694 8.173542 TGTAGATTGTTTGCTCCTCGTATATA 57.826 34.615 0.00 0.00 0.00 0.86
3021 4695 7.050970 TGTAGATTGTTTGCTCCTCGTATAT 57.949 36.000 0.00 0.00 0.00 0.86
3022 4696 6.459670 TGTAGATTGTTTGCTCCTCGTATA 57.540 37.500 0.00 0.00 0.00 1.47
3023 4697 5.339008 TGTAGATTGTTTGCTCCTCGTAT 57.661 39.130 0.00 0.00 0.00 3.06
3072 4746 8.820153 ATGAGCAAATTAAAGGAGAAGATTCT 57.180 30.769 0.00 0.00 41.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.