Multiple sequence alignment - TraesCS3D01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G295300 chr3D 100.000 8248 0 0 1 8248 407395372 407387125 0.000000e+00 15232.0
1 TraesCS3D01G295300 chr3D 84.282 439 40 14 2430 2843 554692001 554692435 1.290000e-107 401.0
2 TraesCS3D01G295300 chr3D 87.912 273 22 9 7825 8089 356407429 356407160 2.240000e-80 311.0
3 TraesCS3D01G295300 chr3D 87.546 273 23 9 7825 8089 354440179 354440448 1.040000e-78 305.0
4 TraesCS3D01G295300 chr3D 90.395 177 15 2 179 355 548543783 548543957 1.790000e-56 231.0
5 TraesCS3D01G295300 chr3D 96.774 93 3 0 2179 2271 407393103 407393011 1.110000e-33 156.0
6 TraesCS3D01G295300 chr3D 96.774 93 3 0 2270 2362 407393194 407393102 1.110000e-33 156.0
7 TraesCS3D01G295300 chr3D 100.000 31 0 0 3247 3277 373939786 373939756 3.220000e-04 58.4
8 TraesCS3D01G295300 chr3B 95.210 4280 117 31 543 4755 533029793 533025535 0.000000e+00 6687.0
9 TraesCS3D01G295300 chr3B 95.921 3530 114 19 4740 8248 533024551 533021031 0.000000e+00 5694.0
10 TraesCS3D01G295300 chr3B 92.169 166 13 0 190 355 103781696 103781861 1.380000e-57 235.0
11 TraesCS3D01G295300 chr3B 98.925 93 1 0 2179 2271 533028022 533027930 5.120000e-37 167.0
12 TraesCS3D01G295300 chr3B 95.876 97 3 1 2267 2362 533028117 533028021 1.110000e-33 156.0
13 TraesCS3D01G295300 chr3B 77.622 143 27 4 3640 3780 346609706 346609845 1.910000e-11 82.4
14 TraesCS3D01G295300 chr3B 97.436 39 1 0 3419 3457 533026832 533026794 5.340000e-07 67.6
15 TraesCS3D01G295300 chr3B 100.000 31 0 0 3247 3277 487670430 487670400 3.220000e-04 58.4
16 TraesCS3D01G295300 chr3A 95.444 3336 85 32 4487 7795 544382626 544385921 0.000000e+00 5256.0
17 TraesCS3D01G295300 chr3A 97.666 2314 49 4 2179 4489 544379822 544382133 0.000000e+00 3969.0
18 TraesCS3D01G295300 chr3A 92.738 1804 66 25 612 2362 544378123 544379914 0.000000e+00 2545.0
19 TraesCS3D01G295300 chr3A 93.956 182 11 0 354 535 544377734 544377915 8.150000e-70 276.0
20 TraesCS3D01G295300 chr3A 98.925 93 1 0 2179 2271 544379913 544380005 5.120000e-37 167.0
21 TraesCS3D01G295300 chr3A 95.699 93 4 0 2270 2362 544379731 544379823 5.160000e-32 150.0
22 TraesCS3D01G295300 chr3A 90.000 110 4 4 1 104 544376804 544376912 1.440000e-27 135.0
23 TraesCS3D01G295300 chr3A 90.385 104 7 3 97 197 544377598 544377701 5.190000e-27 134.0
24 TraesCS3D01G295300 chr3A 84.466 103 14 2 8081 8183 664704782 664704882 5.270000e-17 100.0
25 TraesCS3D01G295300 chr3A 76.923 143 28 4 3640 3780 269649076 269649215 8.880000e-10 76.8
26 TraesCS3D01G295300 chr3A 97.436 39 1 0 3419 3457 544381097 544381135 5.340000e-07 67.6
27 TraesCS3D01G295300 chr3A 100.000 28 0 0 543 570 421772681 421772654 1.500000e-02 52.8
28 TraesCS3D01G295300 chr1A 83.789 549 83 5 3963 4507 9108928 9108382 4.410000e-142 516.0
29 TraesCS3D01G295300 chr1A 89.073 302 30 3 4798 5097 9108096 9107796 1.010000e-98 372.0
30 TraesCS3D01G295300 chr1A 77.410 695 103 35 6098 6754 9106490 9105812 1.690000e-96 364.0
31 TraesCS3D01G295300 chr1A 93.011 186 13 0 2825 3010 9109495 9109310 1.050000e-68 272.0
32 TraesCS3D01G295300 chr1A 97.619 42 1 0 540 581 468609690 468609649 1.150000e-08 73.1
33 TraesCS3D01G295300 chr1B 83.422 567 80 10 3949 4507 9840536 9841096 1.590000e-141 514.0
34 TraesCS3D01G295300 chr1B 81.350 563 99 5 3948 4505 9904609 9905170 3.510000e-123 453.0
35 TraesCS3D01G295300 chr1B 77.872 705 97 34 6095 6754 9842933 9843623 4.670000e-102 383.0
36 TraesCS3D01G295300 chr1B 89.310 290 29 2 2437 2725 9839579 9839867 6.080000e-96 363.0
37 TraesCS3D01G295300 chr1B 93.567 171 11 0 2822 2992 9839983 9840153 1.060000e-63 255.0
38 TraesCS3D01G295300 chr1D 81.517 633 107 9 3884 4507 7476657 7476026 5.710000e-141 512.0
39 TraesCS3D01G295300 chr1D 77.825 699 96 33 6098 6753 7474211 7473529 2.170000e-100 377.0
40 TraesCS3D01G295300 chr1D 90.672 268 24 1 4827 5093 7475693 7475426 1.020000e-93 355.0
41 TraesCS3D01G295300 chr1D 77.896 656 85 32 6141 6754 7412719 7412082 3.660000e-93 353.0
42 TraesCS3D01G295300 chr1D 93.220 177 12 0 2815 2991 7477096 7476920 2.280000e-65 261.0
43 TraesCS3D01G295300 chr1D 93.750 160 10 0 196 355 247303431 247303272 2.970000e-59 241.0
44 TraesCS3D01G295300 chr2D 79.828 699 65 22 2430 3103 481561200 481560553 2.730000e-119 440.0
45 TraesCS3D01G295300 chr2D 84.282 439 40 13 2430 2843 27629309 27629743 1.290000e-107 401.0
46 TraesCS3D01G295300 chr2D 87.868 272 22 9 7825 8088 506564735 506564467 8.040000e-80 309.0
47 TraesCS3D01G295300 chr2D 87.868 272 22 9 7825 8088 506575170 506574902 8.040000e-80 309.0
48 TraesCS3D01G295300 chr5D 85.472 413 49 10 7820 8224 379421634 379421225 3.560000e-113 420.0
49 TraesCS3D01G295300 chr5D 84.738 439 38 16 2430 2843 505010850 505010416 5.960000e-111 412.0
50 TraesCS3D01G295300 chr5D 84.738 439 38 14 2430 2843 505025470 505025036 5.960000e-111 412.0
51 TraesCS3D01G295300 chr5D 92.308 52 4 0 3650 3701 40959272 40959221 3.190000e-09 75.0
52 TraesCS3D01G295300 chr7D 84.738 439 38 14 2430 2843 548342827 548342393 5.960000e-111 412.0
53 TraesCS3D01G295300 chr7D 84.510 439 38 15 2430 2843 577379239 577378806 2.770000e-109 407.0
54 TraesCS3D01G295300 chr7D 93.750 160 10 0 196 355 249621996 249621837 2.970000e-59 241.0
55 TraesCS3D01G295300 chr7D 93.939 99 4 2 3777 3873 88188528 88188430 1.850000e-31 148.0
56 TraesCS3D01G295300 chr7D 83.217 143 21 3 8081 8222 492455384 492455524 2.420000e-25 128.0
57 TraesCS3D01G295300 chr7D 77.852 149 28 5 3212 3357 185126884 185127030 4.100000e-13 87.9
58 TraesCS3D01G295300 chr5B 94.170 223 11 2 7859 8079 64626298 64626076 1.030000e-88 339.0
59 TraesCS3D01G295300 chr5B 84.694 98 13 2 8081 8178 504519549 504519644 6.810000e-16 97.1
60 TraesCS3D01G295300 chr5B 94.595 37 2 0 2724 2760 462745015 462745051 3.220000e-04 58.4
61 TraesCS3D01G295300 chr4D 87.546 273 23 9 7825 8089 294260998 294260729 1.040000e-78 305.0
62 TraesCS3D01G295300 chr7A 85.522 297 34 8 7802 8093 116603504 116603212 1.350000e-77 302.0
63 TraesCS3D01G295300 chr2A 85.824 261 20 14 2382 2628 509369562 509369305 2.280000e-65 261.0
64 TraesCS3D01G295300 chr2A 91.667 168 14 0 188 355 189020829 189020996 4.980000e-57 233.0
65 TraesCS3D01G295300 chr2A 90.805 174 13 3 184 355 700986248 700986076 6.440000e-56 230.0
66 TraesCS3D01G295300 chr4A 85.714 259 20 14 2382 2626 435432587 435432842 2.950000e-64 257.0
67 TraesCS3D01G295300 chr7B 75.559 671 69 31 2384 3018 613148256 613147645 8.270000e-60 243.0
68 TraesCS3D01G295300 chr7B 78.523 149 27 4 8080 8224 436615828 436615975 8.810000e-15 93.5
69 TraesCS3D01G295300 chr2B 93.789 161 10 0 195 355 659017050 659017210 8.270000e-60 243.0
70 TraesCS3D01G295300 chr2B 93.168 161 11 0 195 355 478189637 478189797 3.850000e-58 237.0
71 TraesCS3D01G295300 chrUn 93.125 160 11 0 196 355 37768425 37768584 1.380000e-57 235.0
72 TraesCS3D01G295300 chr6A 88.889 81 9 0 8079 8159 183364160 183364080 5.270000e-17 100.0
73 TraesCS3D01G295300 chr6A 85.057 87 12 1 8081 8167 27455351 27455266 4.100000e-13 87.9
74 TraesCS3D01G295300 chr6A 85.057 87 12 1 8081 8167 27462933 27462848 4.100000e-13 87.9
75 TraesCS3D01G295300 chr6A 79.130 115 22 2 3637 3750 577687309 577687422 2.470000e-10 78.7
76 TraesCS3D01G295300 chr6A 94.118 51 2 1 3637 3687 577476095 577476144 8.880000e-10 76.8
77 TraesCS3D01G295300 chr6A 94.118 51 2 1 3637 3687 577659018 577659067 8.880000e-10 76.8
78 TraesCS3D01G295300 chr6A 94.118 51 2 1 3637 3687 577704872 577704921 8.880000e-10 76.8
79 TraesCS3D01G295300 chr6B 91.176 68 4 2 3293 3359 195808353 195808419 3.170000e-14 91.6
80 TraesCS3D01G295300 chr5A 96.970 33 1 0 7820 7852 124868513 124868481 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G295300 chr3D 407387125 407395372 8247 True 5181.333333 15232 97.849333 1 8248 3 chr3D.!!$R3 8247
1 TraesCS3D01G295300 chr3B 533021031 533029793 8762 True 2554.320000 6687 96.673600 543 8248 5 chr3B.!!$R2 7705
2 TraesCS3D01G295300 chr3A 544376804 544385921 9117 False 1411.066667 5256 94.694333 1 7795 9 chr3A.!!$F3 7794
3 TraesCS3D01G295300 chr1A 9105812 9109495 3683 True 381.000000 516 85.820750 2825 6754 4 chr1A.!!$R2 3929
4 TraesCS3D01G295300 chr1B 9904609 9905170 561 False 453.000000 453 81.350000 3948 4505 1 chr1B.!!$F1 557
5 TraesCS3D01G295300 chr1B 9839579 9843623 4044 False 378.750000 514 86.042750 2437 6754 4 chr1B.!!$F2 4317
6 TraesCS3D01G295300 chr1D 7473529 7477096 3567 True 376.250000 512 85.808500 2815 6753 4 chr1D.!!$R3 3938
7 TraesCS3D01G295300 chr1D 7412082 7412719 637 True 353.000000 353 77.896000 6141 6754 1 chr1D.!!$R1 613
8 TraesCS3D01G295300 chr2D 481560553 481561200 647 True 440.000000 440 79.828000 2430 3103 1 chr2D.!!$R1 673
9 TraesCS3D01G295300 chr7B 613147645 613148256 611 True 243.000000 243 75.559000 2384 3018 1 chr7B.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 40 0.311165 ACTCGTCCACACGTCTCTTG 59.689 55.000 0.00 0.0 46.76 3.02 F
1247 2172 0.320160 AGTTTACGGCGGGTCTGTTC 60.320 55.000 13.24 0.0 35.51 3.18 F
1334 2260 0.867746 TTTGTGCTGCTACGAGCTTG 59.132 50.000 0.00 0.0 42.97 4.01 F
1349 2275 1.417890 AGCTTGTTAGTGCTGGTCTGT 59.582 47.619 0.00 0.0 38.21 3.41 F
2132 3081 1.560923 CACGCTATGTGTAGGTCTGC 58.439 55.000 0.00 0.0 43.88 4.26 F
3447 4543 1.433534 GCTAGCTAGGCTATTTGGCG 58.566 55.000 22.10 0.0 46.88 5.69 F
4412 5646 2.030274 CCTAAAAAGCACCCGAAGTTGG 60.030 50.000 0.00 0.0 0.00 3.77 F
6048 9504 1.008084 ACCTCCCACTTCTAGTACCCC 59.992 57.143 0.00 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 2592 0.324943 TGGCCAGAGTGGAAACTAGC 59.675 55.000 0.00 0.00 40.96 3.42 R
3122 4209 0.446222 CGTATGCGGGTGTTTTGAGG 59.554 55.000 0.00 0.00 0.00 3.86 R
3421 4517 1.001406 ATAGCCTAGCTAGCCAAAGCG 59.999 52.381 15.74 0.91 44.66 4.68 R
3447 4543 0.679321 AGCTAGCCAAAGCAGCTTCC 60.679 55.000 12.13 0.10 45.28 3.46 R
3468 4564 1.656818 GCAGCTTCCGCCAAATAGCA 61.657 55.000 0.00 0.00 36.11 3.49 R
4905 7761 1.072965 AGGGAGAAGAAACCTGTGCAG 59.927 52.381 0.00 0.00 32.26 4.41 R
6050 9506 0.108138 ACAGCGTGGCCTGAAGATAC 60.108 55.000 3.32 0.00 36.67 2.24 R
8142 11706 0.035739 ACCGTAACATCACACACCCC 59.964 55.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 40 0.311165 ACTCGTCCACACGTCTCTTG 59.689 55.000 0.00 0.00 46.76 3.02
55 62 1.802508 CGATACGAGCAAGCATCACCA 60.803 52.381 0.00 0.00 0.00 4.17
88 95 3.005791 GCAACATAACTTGCCAGGACTTT 59.994 43.478 0.00 0.00 40.68 2.66
89 96 4.501400 GCAACATAACTTGCCAGGACTTTT 60.501 41.667 0.00 0.00 40.68 2.27
136 836 4.201910 GCGGTGCTACATGTTGTTTATGAT 60.202 41.667 2.30 0.00 0.00 2.45
142 842 7.970061 GTGCTACATGTTGTTTATGATGTCAAT 59.030 33.333 2.30 0.00 31.56 2.57
161 861 7.153478 GTCAATCGACATCATAAAATTTGGC 57.847 36.000 0.00 0.00 42.13 4.52
180 880 5.677319 TGGCTTAGCTTCACTAATACACT 57.323 39.130 3.59 0.00 40.11 3.55
182 882 6.570692 TGGCTTAGCTTCACTAATACACTAC 58.429 40.000 3.59 0.00 40.11 2.73
188 888 9.676861 TTAGCTTCACTAATACACTACTGTCTA 57.323 33.333 0.00 0.00 35.89 2.59
190 890 8.460428 AGCTTCACTAATACACTACTGTCTAAC 58.540 37.037 0.00 0.00 0.00 2.34
191 891 8.460428 GCTTCACTAATACACTACTGTCTAACT 58.540 37.037 0.00 0.00 0.00 2.24
203 903 9.439500 CACTACTGTCTAACTATATACTCCCTC 57.561 40.741 0.00 0.00 0.00 4.30
204 904 8.605065 ACTACTGTCTAACTATATACTCCCTCC 58.395 40.741 0.00 0.00 0.00 4.30
205 905 6.474630 ACTGTCTAACTATATACTCCCTCCG 58.525 44.000 0.00 0.00 0.00 4.63
206 906 6.044171 ACTGTCTAACTATATACTCCCTCCGT 59.956 42.308 0.00 0.00 0.00 4.69
209 909 6.374053 GTCTAACTATATACTCCCTCCGTTCC 59.626 46.154 0.00 0.00 0.00 3.62
210 910 5.336491 AACTATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
211 911 6.460103 AACTATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 0.00 2.94
213 913 6.856757 ACTATATACTCCCTCCGTTCCTAAA 58.143 40.000 0.00 0.00 0.00 1.85
214 914 7.477008 ACTATATACTCCCTCCGTTCCTAAAT 58.523 38.462 0.00 0.00 0.00 1.40
215 915 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
216 916 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
217 917 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
218 918 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
219 919 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
220 920 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
221 921 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
224 924 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
225 925 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
226 926 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
227 927 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
228 928 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
229 929 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
230 930 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
231 931 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
243 943 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
244 944 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
245 945 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
246 946 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
247 947 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
248 948 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
249 949 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
250 950 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
251 951 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
252 952 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
253 953 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
254 954 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
255 955 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
256 956 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
258 958 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
259 959 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
260 960 6.152154 CACTATGGACCACATACGGATGTATA 59.848 42.308 14.23 6.48 44.82 1.47
261 961 6.895756 ACTATGGACCACATACGGATGTATAT 59.104 38.462 14.23 1.16 44.82 0.86
262 962 5.400066 TGGACCACATACGGATGTATATG 57.600 43.478 14.23 5.14 44.82 1.78
267 967 5.973651 CACATACGGATGTATATGGATGC 57.026 43.478 14.23 0.00 44.82 3.91
268 968 5.418676 CACATACGGATGTATATGGATGCA 58.581 41.667 14.23 0.00 44.82 3.96
269 969 6.051074 CACATACGGATGTATATGGATGCAT 58.949 40.000 14.23 4.68 44.82 3.96
270 970 6.539826 CACATACGGATGTATATGGATGCATT 59.460 38.462 14.23 0.00 44.82 3.56
271 971 7.066163 CACATACGGATGTATATGGATGCATTT 59.934 37.037 14.23 0.00 44.82 2.32
272 972 7.611467 ACATACGGATGTATATGGATGCATTTT 59.389 33.333 12.79 0.00 44.77 1.82
273 973 9.108284 CATACGGATGTATATGGATGCATTTTA 57.892 33.333 4.56 0.00 38.38 1.52
274 974 7.615582 ACGGATGTATATGGATGCATTTTAG 57.384 36.000 4.56 0.00 38.38 1.85
275 975 7.394016 ACGGATGTATATGGATGCATTTTAGA 58.606 34.615 4.56 0.00 38.38 2.10
276 976 7.550551 ACGGATGTATATGGATGCATTTTAGAG 59.449 37.037 4.56 0.00 38.38 2.43
277 977 7.550551 CGGATGTATATGGATGCATTTTAGAGT 59.449 37.037 4.56 0.00 38.38 3.24
278 978 8.671921 GGATGTATATGGATGCATTTTAGAGTG 58.328 37.037 4.56 0.00 38.38 3.51
279 979 9.224267 GATGTATATGGATGCATTTTAGAGTGT 57.776 33.333 4.56 0.00 38.38 3.55
281 981 9.710900 TGTATATGGATGCATTTTAGAGTGTAG 57.289 33.333 4.56 0.00 0.00 2.74
282 982 9.929180 GTATATGGATGCATTTTAGAGTGTAGA 57.071 33.333 4.56 0.00 0.00 2.59
285 985 7.792374 TGGATGCATTTTAGAGTGTAGATTC 57.208 36.000 0.00 0.00 0.00 2.52
286 986 7.337938 TGGATGCATTTTAGAGTGTAGATTCA 58.662 34.615 0.00 0.00 0.00 2.57
287 987 7.828717 TGGATGCATTTTAGAGTGTAGATTCAA 59.171 33.333 0.00 0.00 0.00 2.69
288 988 8.844244 GGATGCATTTTAGAGTGTAGATTCAAT 58.156 33.333 0.00 0.00 0.00 2.57
289 989 9.875675 GATGCATTTTAGAGTGTAGATTCAATC 57.124 33.333 0.00 0.00 33.42 2.67
290 990 8.791327 TGCATTTTAGAGTGTAGATTCAATCA 57.209 30.769 0.00 0.00 35.30 2.57
291 991 9.399797 TGCATTTTAGAGTGTAGATTCAATCAT 57.600 29.630 0.00 0.00 35.30 2.45
297 997 7.934855 AGAGTGTAGATTCAATCATTTTGCT 57.065 32.000 0.00 0.00 35.30 3.91
298 998 7.983307 AGAGTGTAGATTCAATCATTTTGCTC 58.017 34.615 0.00 0.28 35.30 4.26
299 999 7.066766 AGAGTGTAGATTCAATCATTTTGCTCC 59.933 37.037 0.00 0.00 35.30 4.70
300 1000 5.967674 GTGTAGATTCAATCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
301 1001 5.647658 TGTAGATTCAATCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
302 1002 6.821160 TGTAGATTCAATCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
303 1003 6.949352 AGATTCAATCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
304 1004 8.988934 GTAGATTCAATCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
305 1005 8.627208 AGATTCAATCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
306 1006 8.509690 AGATTCAATCATTTTGCTCCGTATATG 58.490 33.333 0.00 0.00 0.00 1.78
307 1007 6.558771 TCAATCATTTTGCTCCGTATATGG 57.441 37.500 4.41 4.41 0.00 2.74
308 1008 6.061441 TCAATCATTTTGCTCCGTATATGGT 58.939 36.000 10.85 0.00 0.00 3.55
309 1009 6.545666 TCAATCATTTTGCTCCGTATATGGTT 59.454 34.615 10.85 0.00 0.00 3.67
310 1010 6.560253 ATCATTTTGCTCCGTATATGGTTC 57.440 37.500 10.85 4.86 0.00 3.62
311 1011 5.432645 TCATTTTGCTCCGTATATGGTTCA 58.567 37.500 10.85 7.24 0.00 3.18
312 1012 6.061441 TCATTTTGCTCCGTATATGGTTCAT 58.939 36.000 10.85 0.00 0.00 2.57
313 1013 7.220740 TCATTTTGCTCCGTATATGGTTCATA 58.779 34.615 10.85 3.33 0.00 2.15
314 1014 7.387673 TCATTTTGCTCCGTATATGGTTCATAG 59.612 37.037 10.85 1.92 29.42 2.23
315 1015 5.801531 TTGCTCCGTATATGGTTCATAGT 57.198 39.130 10.85 0.00 29.42 2.12
316 1016 5.134202 TGCTCCGTATATGGTTCATAGTG 57.866 43.478 10.85 0.00 29.42 2.74
317 1017 4.830600 TGCTCCGTATATGGTTCATAGTGA 59.169 41.667 10.85 0.00 29.42 3.41
318 1018 5.303333 TGCTCCGTATATGGTTCATAGTGAA 59.697 40.000 10.85 0.00 33.32 3.18
319 1019 6.183360 TGCTCCGTATATGGTTCATAGTGAAA 60.183 38.462 10.85 0.00 38.22 2.69
320 1020 6.874134 GCTCCGTATATGGTTCATAGTGAAAT 59.126 38.462 10.85 0.00 38.22 2.17
321 1021 7.063544 GCTCCGTATATGGTTCATAGTGAAATC 59.936 40.741 10.85 0.00 38.22 2.17
322 1022 8.190326 TCCGTATATGGTTCATAGTGAAATCT 57.810 34.615 10.85 0.00 38.22 2.40
323 1023 8.304596 TCCGTATATGGTTCATAGTGAAATCTC 58.695 37.037 10.85 0.00 38.22 2.75
324 1024 8.307483 CCGTATATGGTTCATAGTGAAATCTCT 58.693 37.037 2.46 0.00 38.22 3.10
325 1025 9.347934 CGTATATGGTTCATAGTGAAATCTCTC 57.652 37.037 0.00 0.00 38.22 3.20
326 1026 9.646427 GTATATGGTTCATAGTGAAATCTCTCC 57.354 37.037 0.00 0.00 38.22 3.71
327 1027 6.566079 ATGGTTCATAGTGAAATCTCTCCA 57.434 37.500 0.00 0.00 38.22 3.86
328 1028 6.373005 TGGTTCATAGTGAAATCTCTCCAA 57.627 37.500 0.00 0.00 38.22 3.53
329 1029 6.778821 TGGTTCATAGTGAAATCTCTCCAAA 58.221 36.000 0.00 0.00 38.22 3.28
330 1030 6.881065 TGGTTCATAGTGAAATCTCTCCAAAG 59.119 38.462 0.00 0.00 38.22 2.77
331 1031 7.106239 GGTTCATAGTGAAATCTCTCCAAAGA 58.894 38.462 0.00 0.00 38.22 2.52
332 1032 7.065204 GGTTCATAGTGAAATCTCTCCAAAGAC 59.935 40.741 0.00 0.00 38.22 3.01
333 1033 7.487822 TCATAGTGAAATCTCTCCAAAGACT 57.512 36.000 0.00 0.00 0.00 3.24
334 1034 7.911651 TCATAGTGAAATCTCTCCAAAGACTT 58.088 34.615 0.00 0.00 0.00 3.01
335 1035 7.821359 TCATAGTGAAATCTCTCCAAAGACTTG 59.179 37.037 0.00 0.00 0.00 3.16
336 1036 5.934781 AGTGAAATCTCTCCAAAGACTTGT 58.065 37.500 0.00 0.00 0.00 3.16
337 1037 7.067496 AGTGAAATCTCTCCAAAGACTTGTA 57.933 36.000 0.00 0.00 0.00 2.41
338 1038 7.684529 AGTGAAATCTCTCCAAAGACTTGTAT 58.315 34.615 0.00 0.00 0.00 2.29
339 1039 8.160106 AGTGAAATCTCTCCAAAGACTTGTATT 58.840 33.333 0.00 0.00 0.00 1.89
340 1040 8.787852 GTGAAATCTCTCCAAAGACTTGTATTT 58.212 33.333 0.00 0.00 0.00 1.40
351 1051 9.846248 CCAAAGACTTGTATTTAGAAATGAAGG 57.154 33.333 10.77 0.00 0.00 3.46
352 1052 9.846248 CAAAGACTTGTATTTAGAAATGAAGGG 57.154 33.333 10.77 0.00 0.00 3.95
359 1059 8.055279 TGTATTTAGAAATGAAGGGAGCTTTG 57.945 34.615 0.00 0.00 0.00 2.77
373 1073 3.492482 GGAGCTTTGACATCTCTCCTAGC 60.492 52.174 9.07 0.00 40.02 3.42
380 1080 1.075970 ATCTCTCCTAGCACCGCCA 60.076 57.895 0.00 0.00 0.00 5.69
415 1115 5.470098 GGCGAGGTTATAATCATGTCAATGT 59.530 40.000 0.00 0.00 35.15 2.71
437 1137 5.482526 TGTCTTATGTTAGCCTACAGGTTCA 59.517 40.000 0.00 0.00 37.57 3.18
439 1139 5.720041 TCTTATGTTAGCCTACAGGTTCACT 59.280 40.000 0.00 0.00 37.57 3.41
448 1148 4.222366 GCCTACAGGTTCACTTAGGTACTT 59.778 45.833 0.00 0.00 37.44 2.24
467 1167 5.116084 ACTTTTATGCCATGCCTCTAAGA 57.884 39.130 0.00 0.00 0.00 2.10
481 1181 5.129980 TGCCTCTAAGACTGATCATGAATGT 59.870 40.000 0.00 0.00 0.00 2.71
496 1196 7.994425 TCATGAATGTTAAGTTGTGGTACAT 57.006 32.000 0.00 0.00 44.52 2.29
535 1235 1.932511 ACGTCAACGGCGAACTAAAAA 59.067 42.857 16.62 0.00 44.95 1.94
601 1304 0.457853 AGTACTGTGTATGTGCGGCG 60.458 55.000 0.51 0.51 0.00 6.46
602 1305 1.807981 TACTGTGTATGTGCGGCGC 60.808 57.895 27.44 27.44 0.00 6.53
603 1306 4.208948 CTGTGTATGTGCGGCGCG 62.209 66.667 28.09 0.00 0.00 6.86
620 1495 2.796383 GCGCGGCTCTATATAGTGATGG 60.796 54.545 8.83 4.94 0.00 3.51
745 1626 3.451178 ACCCTGCAACGATAGACAATACT 59.549 43.478 0.00 0.00 41.38 2.12
761 1646 5.529791 ACAATACTAGCGCTATACAACCAG 58.470 41.667 19.19 7.87 0.00 4.00
762 1647 5.068723 ACAATACTAGCGCTATACAACCAGT 59.931 40.000 19.19 13.84 0.00 4.00
810 1700 3.725490 GTACACAAGAAGAACGAACCCT 58.275 45.455 0.00 0.00 0.00 4.34
839 1729 3.023735 GTTCCCTCCCATGGGCCT 61.024 66.667 27.41 0.00 46.67 5.19
877 1769 1.466167 CGATGCACTTGGGTCTTTGAG 59.534 52.381 0.00 0.00 0.00 3.02
923 1823 1.941325 CCCCCGATCTCTTTCTTTCG 58.059 55.000 0.00 0.00 0.00 3.46
1247 2172 0.320160 AGTTTACGGCGGGTCTGTTC 60.320 55.000 13.24 0.00 35.51 3.18
1267 2192 1.465777 CGGGTATTGGTTCCGTTTGTC 59.534 52.381 0.00 0.00 39.04 3.18
1268 2193 2.786777 GGGTATTGGTTCCGTTTGTCT 58.213 47.619 0.00 0.00 0.00 3.41
1270 2195 3.143728 GGTATTGGTTCCGTTTGTCTGT 58.856 45.455 0.00 0.00 0.00 3.41
1288 2214 3.793888 GGGGATTCCTTCGCCGGT 61.794 66.667 1.90 0.00 46.33 5.28
1289 2215 2.513897 GGGATTCCTTCGCCGGTG 60.514 66.667 9.28 9.28 0.00 4.94
1306 2232 2.869702 GTTTGCGCGTGATTCGGC 60.870 61.111 8.43 0.00 40.26 5.54
1307 2233 4.096558 TTTGCGCGTGATTCGGCC 62.097 61.111 8.43 0.00 40.26 6.13
1334 2260 0.867746 TTTGTGCTGCTACGAGCTTG 59.132 50.000 0.00 0.00 42.97 4.01
1349 2275 1.417890 AGCTTGTTAGTGCTGGTCTGT 59.582 47.619 0.00 0.00 38.21 3.41
1446 2373 3.840468 TGCTGCTTTGCACATATTCTTG 58.160 40.909 0.00 0.00 38.12 3.02
1603 2530 2.235016 GTTGTTGATGTGGGGCAACTA 58.765 47.619 0.00 0.00 43.52 2.24
1754 2681 9.778741 TTATTGTCTGAGTTGAGTTTCATACTT 57.221 29.630 0.00 0.00 37.17 2.24
1785 2717 2.159841 CGCACAATCTGTTCGTCGAATT 60.160 45.455 11.45 0.00 32.61 2.17
1804 2752 6.015434 TCGAATTATCTATGAAGCTGCCACTA 60.015 38.462 0.00 0.00 0.00 2.74
1886 2834 7.936847 TGCTATTGTTATTGAATCCGGTCTAAT 59.063 33.333 0.00 1.37 0.00 1.73
1888 2836 7.745620 ATTGTTATTGAATCCGGTCTAATCC 57.254 36.000 0.00 0.00 0.00 3.01
2132 3081 1.560923 CACGCTATGTGTAGGTCTGC 58.439 55.000 0.00 0.00 43.88 4.26
2281 3230 4.109766 CTGTGCATAAAATGTGATGGCTG 58.890 43.478 0.00 0.00 0.00 4.85
2283 3232 4.704057 TGTGCATAAAATGTGATGGCTGTA 59.296 37.500 0.00 0.00 0.00 2.74
2308 3257 8.577048 ACTACAAACATCTTAGAGCTACACTA 57.423 34.615 0.00 0.00 0.00 2.74
2354 3394 4.594062 TCCTTAAAAGGTGCCTGTACTGTA 59.406 41.667 8.57 0.00 46.54 2.74
2364 3404 5.581085 GGTGCCTGTACTGTACATAAAAGAG 59.419 44.000 19.99 7.48 38.15 2.85
2559 3613 8.223769 GTCAATGCTTATCCGTACATATTCAAG 58.776 37.037 0.00 0.00 0.00 3.02
2765 3847 7.451566 ACCAGAAAATTGCTAATGACTTACCTT 59.548 33.333 0.00 0.00 0.00 3.50
2995 4082 5.297547 TCTTTATATTGCAGGTAAGGCTCG 58.702 41.667 0.00 0.00 0.00 5.03
3122 4209 2.109126 GGCATCTCCAACGCTGTCC 61.109 63.158 0.00 0.00 34.01 4.02
3421 4517 4.449743 TGAACAACGTGATTAGTGTTAGCC 59.550 41.667 1.26 0.00 0.00 3.93
3447 4543 1.433534 GCTAGCTAGGCTATTTGGCG 58.566 55.000 22.10 0.00 46.88 5.69
3468 4564 2.570135 GAAGCTGCTTTGGCTAGCTAT 58.430 47.619 17.10 0.00 45.13 2.97
3719 4815 2.486636 TTCATTCTGCGGACGCGTCT 62.487 55.000 35.50 14.05 45.51 4.18
3798 4894 8.217799 TGCCCTAATATGTGTAAAGAGCTTATT 58.782 33.333 0.00 0.00 0.00 1.40
4412 5646 2.030274 CCTAAAAAGCACCCGAAGTTGG 60.030 50.000 0.00 0.00 0.00 3.77
4668 6491 3.136345 CTGGCGCAACAGGCAACAA 62.136 57.895 10.83 0.00 46.12 2.83
4905 7761 6.939163 ACTCCATACATCTTCAATTCTATGCC 59.061 38.462 0.00 0.00 0.00 4.40
5079 7935 2.064762 CTGCTTTTCTGGTGAGACGAG 58.935 52.381 0.00 0.00 0.00 4.18
5589 8768 2.668850 TTTCTCCATCCCTTCCTCCT 57.331 50.000 0.00 0.00 0.00 3.69
5928 9109 7.584122 AGTTTAGTGAGTTGTCAAGAGAGTA 57.416 36.000 0.00 0.00 33.27 2.59
5956 9137 3.276846 GCGGCCACAAACGAGTGT 61.277 61.111 2.24 0.00 37.82 3.55
6048 9504 1.008084 ACCTCCCACTTCTAGTACCCC 59.992 57.143 0.00 0.00 0.00 4.95
6050 9506 2.389715 CTCCCACTTCTAGTACCCCAG 58.610 57.143 0.00 0.00 0.00 4.45
6059 9516 6.039941 CACTTCTAGTACCCCAGTATCTTCAG 59.960 46.154 0.00 0.00 0.00 3.02
6153 9651 2.221169 TCCACAGAGTTTGACATGTGC 58.779 47.619 1.15 0.00 41.31 4.57
6176 9674 2.421775 CGCCATGTATGCTAAAACCACA 59.578 45.455 0.00 0.00 0.00 4.17
6189 9688 2.899303 AACCACAGGGATTTGGGTAG 57.101 50.000 0.00 0.00 37.18 3.18
6358 9865 2.507407 TTCCCCTGCTTGGTGTATTC 57.493 50.000 0.00 0.00 0.00 1.75
6626 10157 5.998363 ACTGCCTCGTTATTTTTCTCTCTTT 59.002 36.000 0.00 0.00 0.00 2.52
6627 10158 7.159372 ACTGCCTCGTTATTTTTCTCTCTTTA 58.841 34.615 0.00 0.00 0.00 1.85
6871 10409 9.002600 GTCTTTGCATACATATATCACCAATCA 57.997 33.333 0.00 0.00 0.00 2.57
7029 10568 2.359531 CCTAACCTACGAGGAGCAGAAG 59.640 54.545 7.76 0.00 37.67 2.85
7209 10750 6.569418 CGTGATAGAGTGATGTCCTTATCCAG 60.569 46.154 0.00 0.00 0.00 3.86
7237 10778 3.442625 TGTACAGAACGGAGTGTGGATAG 59.557 47.826 0.00 0.00 45.00 2.08
7348 10889 6.959639 TCTTGTAAAAACAGAGCTGGAAAT 57.040 33.333 0.00 0.00 34.19 2.17
7477 11019 2.854777 CAGTCACGGACTCGAATTGATC 59.145 50.000 3.87 0.00 41.37 2.92
7532 11074 0.961019 ATTTCTGCTCCTTGCGCAAA 59.039 45.000 25.01 9.49 46.63 3.68
7535 11077 1.819928 TCTGCTCCTTGCGCAAATTA 58.180 45.000 25.01 11.14 46.63 1.40
7637 11191 7.093465 TGAGTACTACCTCCTTCCTAAAATGTG 60.093 40.741 0.00 0.00 0.00 3.21
7714 11268 8.458573 TCACTTGTTGTATGTCCACTAAATTT 57.541 30.769 0.00 0.00 0.00 1.82
7805 11364 4.980434 GCATGCATTTTTAGGCTAGTCATG 59.020 41.667 14.21 5.19 33.85 3.07
7860 11422 6.312529 TCCATAGTGGGTACTATAGTTCTGG 58.687 44.000 11.40 8.52 45.95 3.86
7871 11433 8.702819 GGTACTATAGTTCTGGTTTATTGGTCT 58.297 37.037 11.40 0.00 0.00 3.85
7872 11434 9.747293 GTACTATAGTTCTGGTTTATTGGTCTC 57.253 37.037 11.40 0.00 0.00 3.36
7877 11439 5.711976 AGTTCTGGTTTATTGGTCTCCATTG 59.288 40.000 0.00 0.00 31.53 2.82
7884 11446 8.310382 TGGTTTATTGGTCTCCATTGTATTTTG 58.690 33.333 0.00 0.00 31.53 2.44
7896 11458 7.646314 TCCATTGTATTTTGTGCCAAATTTTG 58.354 30.769 1.99 1.99 0.00 2.44
7978 11540 5.640732 ACTATGTTCAAATGCGAATCCAAC 58.359 37.500 0.00 0.00 0.00 3.77
8011 11573 6.825284 TTTGTTGACATGCACTAACATTTG 57.175 33.333 0.00 0.00 33.56 2.32
8012 11574 5.512753 TGTTGACATGCACTAACATTTGT 57.487 34.783 0.00 0.00 0.00 2.83
8013 11575 5.518812 TGTTGACATGCACTAACATTTGTC 58.481 37.500 5.98 5.98 32.58 3.18
8014 11576 5.067023 TGTTGACATGCACTAACATTTGTCA 59.933 36.000 10.60 10.60 37.63 3.58
8022 11585 8.853345 CATGCACTAACATTTGTCAGTTAAATC 58.147 33.333 0.00 0.00 30.57 2.17
8058 11622 9.678260 AATTTAGCATAAATTACAAAATGGCCA 57.322 25.926 8.56 8.56 0.00 5.36
8072 11636 0.693622 TGGCCAATAAACCAGGACGA 59.306 50.000 0.61 0.00 31.18 4.20
8090 11654 7.663081 CCAGGACGAAGGTAGTAGTAACATATA 59.337 40.741 0.00 0.00 0.00 0.86
8095 11659 8.790718 ACGAAGGTAGTAGTAACATATATGTGG 58.209 37.037 18.94 0.00 41.61 4.17
8112 11676 2.290832 TGTGGTATCATGCAAGCCTTCA 60.291 45.455 0.00 0.00 0.00 3.02
8113 11677 2.098117 GTGGTATCATGCAAGCCTTCAC 59.902 50.000 0.00 0.00 0.00 3.18
8142 11706 3.619483 AGACGTAGACTCATCTTGTCTCG 59.381 47.826 0.00 6.85 41.82 4.04
8148 11712 0.898320 CTCATCTTGTCTCGGGGTGT 59.102 55.000 0.00 0.00 0.00 4.16
8151 11715 0.321671 ATCTTGTCTCGGGGTGTGTG 59.678 55.000 0.00 0.00 0.00 3.82
8158 11722 1.274167 TCTCGGGGTGTGTGATGTTAC 59.726 52.381 0.00 0.00 0.00 2.50
8196 11760 5.826208 TGTTACCTCAAACCTTTCTTTCCTC 59.174 40.000 0.00 0.00 0.00 3.71
8197 11761 4.519906 ACCTCAAACCTTTCTTTCCTCA 57.480 40.909 0.00 0.00 0.00 3.86
8213 11777 3.429492 TCCTCATTAATTGCTTGCCACA 58.571 40.909 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 33 0.100682 TGCTCGTATCGCCAAGAGAC 59.899 55.000 3.85 0.00 37.70 3.36
33 40 0.875908 TGATGCTTGCTCGTATCGCC 60.876 55.000 0.00 0.00 0.00 5.54
55 62 3.751518 AGTTATGTTGCTCCCTCGTTTT 58.248 40.909 0.00 0.00 0.00 2.43
88 95 1.141645 CACTACCGTGCGCTTAACAA 58.858 50.000 9.73 0.00 33.82 2.83
89 96 2.817035 CACTACCGTGCGCTTAACA 58.183 52.632 9.73 0.00 33.82 2.41
142 842 6.318648 AGCTAAGCCAAATTTTATGATGTCGA 59.681 34.615 0.00 0.00 0.00 4.20
158 858 5.677319 AGTGTATTAGTGAAGCTAAGCCA 57.323 39.130 0.00 0.00 42.34 4.75
161 861 8.679100 AGACAGTAGTGTATTAGTGAAGCTAAG 58.321 37.037 2.39 0.00 38.90 2.18
180 880 7.236432 ACGGAGGGAGTATATAGTTAGACAGTA 59.764 40.741 0.00 0.00 0.00 2.74
182 882 6.474630 ACGGAGGGAGTATATAGTTAGACAG 58.525 44.000 0.00 0.00 0.00 3.51
188 888 5.336491 AGGAACGGAGGGAGTATATAGTT 57.664 43.478 0.00 0.00 0.00 2.24
190 890 7.396623 ACATTTAGGAACGGAGGGAGTATATAG 59.603 40.741 0.00 0.00 0.00 1.31
191 891 7.243824 ACATTTAGGAACGGAGGGAGTATATA 58.756 38.462 0.00 0.00 0.00 0.86
193 893 5.461327 ACATTTAGGAACGGAGGGAGTATA 58.539 41.667 0.00 0.00 0.00 1.47
194 894 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
195 895 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
196 896 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
197 897 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
199 899 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
200 900 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
201 901 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
203 903 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
204 904 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
205 905 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
217 917 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
218 918 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
219 919 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
220 920 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
221 921 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
224 924 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
225 925 6.222038 TGTGGTCCATAGTGAAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
226 926 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
227 927 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
228 928 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
229 929 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
230 930 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
231 931 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
232 932 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
233 933 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
234 934 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
235 935 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
236 936 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
237 937 5.661056 ATACATCCGTATGTGGTCCATAG 57.339 43.478 3.56 0.00 45.99 2.23
238 938 7.107639 CATATACATCCGTATGTGGTCCATA 57.892 40.000 3.56 0.00 45.99 2.74
239 939 5.977635 CATATACATCCGTATGTGGTCCAT 58.022 41.667 3.56 0.00 45.99 3.41
240 940 5.400066 CATATACATCCGTATGTGGTCCA 57.600 43.478 3.56 0.00 45.99 4.02
245 945 5.418676 TGCATCCATATACATCCGTATGTG 58.581 41.667 3.56 3.22 45.99 3.21
247 947 7.558161 AAATGCATCCATATACATCCGTATG 57.442 36.000 0.00 0.00 38.79 2.39
248 948 9.330063 CTAAAATGCATCCATATACATCCGTAT 57.670 33.333 0.00 0.00 41.34 3.06
249 949 8.536175 TCTAAAATGCATCCATATACATCCGTA 58.464 33.333 0.00 0.00 0.00 4.02
250 950 7.394016 TCTAAAATGCATCCATATACATCCGT 58.606 34.615 0.00 0.00 0.00 4.69
251 951 7.550551 ACTCTAAAATGCATCCATATACATCCG 59.449 37.037 0.00 0.00 0.00 4.18
252 952 8.671921 CACTCTAAAATGCATCCATATACATCC 58.328 37.037 0.00 0.00 0.00 3.51
253 953 9.224267 ACACTCTAAAATGCATCCATATACATC 57.776 33.333 0.00 0.00 0.00 3.06
255 955 9.710900 CTACACTCTAAAATGCATCCATATACA 57.289 33.333 0.00 0.00 0.00 2.29
256 956 9.929180 TCTACACTCTAAAATGCATCCATATAC 57.071 33.333 0.00 0.00 0.00 1.47
259 959 9.494271 GAATCTACACTCTAAAATGCATCCATA 57.506 33.333 0.00 0.00 0.00 2.74
260 960 7.994911 TGAATCTACACTCTAAAATGCATCCAT 59.005 33.333 0.00 0.00 0.00 3.41
261 961 7.337938 TGAATCTACACTCTAAAATGCATCCA 58.662 34.615 0.00 0.00 0.00 3.41
262 962 7.792374 TGAATCTACACTCTAAAATGCATCC 57.208 36.000 0.00 0.00 0.00 3.51
263 963 9.875675 GATTGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
264 964 9.399797 TGATTGAATCTACACTCTAAAATGCAT 57.600 29.630 6.73 0.00 0.00 3.96
265 965 8.791327 TGATTGAATCTACACTCTAAAATGCA 57.209 30.769 6.73 0.00 0.00 3.96
271 971 9.453572 AGCAAAATGATTGAATCTACACTCTAA 57.546 29.630 6.73 0.00 0.00 2.10
272 972 9.102757 GAGCAAAATGATTGAATCTACACTCTA 57.897 33.333 6.73 0.00 0.00 2.43
273 973 7.066766 GGAGCAAAATGATTGAATCTACACTCT 59.933 37.037 6.73 0.00 0.00 3.24
274 974 7.192232 GGAGCAAAATGATTGAATCTACACTC 58.808 38.462 6.73 6.00 0.00 3.51
275 975 6.183360 CGGAGCAAAATGATTGAATCTACACT 60.183 38.462 6.73 0.00 0.00 3.55
276 976 5.967674 CGGAGCAAAATGATTGAATCTACAC 59.032 40.000 6.73 0.00 0.00 2.90
277 977 5.647658 ACGGAGCAAAATGATTGAATCTACA 59.352 36.000 6.73 0.00 0.00 2.74
278 978 6.124088 ACGGAGCAAAATGATTGAATCTAC 57.876 37.500 6.73 0.00 0.00 2.59
279 979 9.725019 ATATACGGAGCAAAATGATTGAATCTA 57.275 29.630 6.73 0.00 0.00 1.98
280 980 6.949352 ATACGGAGCAAAATGATTGAATCT 57.051 33.333 6.73 0.00 0.00 2.40
281 981 7.752239 CCATATACGGAGCAAAATGATTGAATC 59.248 37.037 0.00 0.00 0.00 2.52
282 982 7.231317 ACCATATACGGAGCAAAATGATTGAAT 59.769 33.333 0.00 0.00 0.00 2.57
283 983 6.545666 ACCATATACGGAGCAAAATGATTGAA 59.454 34.615 0.00 0.00 0.00 2.69
284 984 6.061441 ACCATATACGGAGCAAAATGATTGA 58.939 36.000 0.00 0.00 0.00 2.57
285 985 6.317789 ACCATATACGGAGCAAAATGATTG 57.682 37.500 0.00 0.00 0.00 2.67
286 986 6.545666 TGAACCATATACGGAGCAAAATGATT 59.454 34.615 0.00 0.00 0.00 2.57
287 987 6.061441 TGAACCATATACGGAGCAAAATGAT 58.939 36.000 0.00 0.00 0.00 2.45
288 988 5.432645 TGAACCATATACGGAGCAAAATGA 58.567 37.500 0.00 0.00 0.00 2.57
289 989 5.749596 TGAACCATATACGGAGCAAAATG 57.250 39.130 0.00 0.00 0.00 2.32
290 990 7.173218 CACTATGAACCATATACGGAGCAAAAT 59.827 37.037 0.00 0.00 0.00 1.82
291 991 6.481976 CACTATGAACCATATACGGAGCAAAA 59.518 38.462 0.00 0.00 0.00 2.44
292 992 5.989168 CACTATGAACCATATACGGAGCAAA 59.011 40.000 0.00 0.00 0.00 3.68
293 993 5.303333 TCACTATGAACCATATACGGAGCAA 59.697 40.000 0.00 0.00 0.00 3.91
294 994 4.830600 TCACTATGAACCATATACGGAGCA 59.169 41.667 0.00 0.00 0.00 4.26
295 995 5.386958 TCACTATGAACCATATACGGAGC 57.613 43.478 0.00 0.00 0.00 4.70
296 996 8.307483 AGATTTCACTATGAACCATATACGGAG 58.693 37.037 0.00 0.00 35.89 4.63
297 997 8.190326 AGATTTCACTATGAACCATATACGGA 57.810 34.615 0.00 0.00 35.89 4.69
298 998 8.307483 AGAGATTTCACTATGAACCATATACGG 58.693 37.037 0.00 0.00 35.89 4.02
299 999 9.347934 GAGAGATTTCACTATGAACCATATACG 57.652 37.037 0.00 0.00 35.89 3.06
300 1000 9.646427 GGAGAGATTTCACTATGAACCATATAC 57.354 37.037 0.00 0.00 35.89 1.47
301 1001 9.379770 TGGAGAGATTTCACTATGAACCATATA 57.620 33.333 0.00 0.00 35.89 0.86
302 1002 8.267620 TGGAGAGATTTCACTATGAACCATAT 57.732 34.615 0.00 0.00 35.89 1.78
303 1003 7.675161 TGGAGAGATTTCACTATGAACCATA 57.325 36.000 0.00 0.00 35.89 2.74
304 1004 6.566079 TGGAGAGATTTCACTATGAACCAT 57.434 37.500 0.00 0.00 35.89 3.55
305 1005 6.373005 TTGGAGAGATTTCACTATGAACCA 57.627 37.500 0.00 0.00 35.89 3.67
306 1006 7.065204 GTCTTTGGAGAGATTTCACTATGAACC 59.935 40.741 0.00 0.00 32.04 3.62
307 1007 7.821846 AGTCTTTGGAGAGATTTCACTATGAAC 59.178 37.037 0.00 0.00 32.04 3.18
308 1008 7.911651 AGTCTTTGGAGAGATTTCACTATGAA 58.088 34.615 0.00 0.00 31.02 2.57
309 1009 7.487822 AGTCTTTGGAGAGATTTCACTATGA 57.512 36.000 0.00 0.00 31.07 2.15
310 1010 7.605691 ACAAGTCTTTGGAGAGATTTCACTATG 59.394 37.037 0.00 0.00 38.66 2.23
311 1011 7.684529 ACAAGTCTTTGGAGAGATTTCACTAT 58.315 34.615 0.00 0.00 38.66 2.12
312 1012 7.067496 ACAAGTCTTTGGAGAGATTTCACTA 57.933 36.000 0.00 0.00 38.66 2.74
313 1013 5.934781 ACAAGTCTTTGGAGAGATTTCACT 58.065 37.500 0.00 0.00 38.66 3.41
314 1014 7.913674 ATACAAGTCTTTGGAGAGATTTCAC 57.086 36.000 0.00 0.00 38.66 3.18
315 1015 8.924511 AAATACAAGTCTTTGGAGAGATTTCA 57.075 30.769 0.00 0.00 38.66 2.69
325 1025 9.846248 CCTTCATTTCTAAATACAAGTCTTTGG 57.154 33.333 0.00 0.00 38.66 3.28
326 1026 9.846248 CCCTTCATTTCTAAATACAAGTCTTTG 57.154 33.333 0.00 0.00 40.24 2.77
327 1027 9.807921 TCCCTTCATTTCTAAATACAAGTCTTT 57.192 29.630 0.00 0.00 0.00 2.52
328 1028 9.454859 CTCCCTTCATTTCTAAATACAAGTCTT 57.545 33.333 0.00 0.00 0.00 3.01
329 1029 7.554476 GCTCCCTTCATTTCTAAATACAAGTCT 59.446 37.037 0.00 0.00 0.00 3.24
330 1030 7.554476 AGCTCCCTTCATTTCTAAATACAAGTC 59.446 37.037 0.00 0.00 0.00 3.01
331 1031 7.406104 AGCTCCCTTCATTTCTAAATACAAGT 58.594 34.615 0.00 0.00 0.00 3.16
332 1032 7.872113 AGCTCCCTTCATTTCTAAATACAAG 57.128 36.000 0.00 0.00 0.00 3.16
333 1033 8.522830 CAAAGCTCCCTTCATTTCTAAATACAA 58.477 33.333 0.00 0.00 0.00 2.41
334 1034 7.888021 TCAAAGCTCCCTTCATTTCTAAATACA 59.112 33.333 0.00 0.00 0.00 2.29
335 1035 8.184848 GTCAAAGCTCCCTTCATTTCTAAATAC 58.815 37.037 0.00 0.00 0.00 1.89
336 1036 7.888021 TGTCAAAGCTCCCTTCATTTCTAAATA 59.112 33.333 0.00 0.00 0.00 1.40
337 1037 6.721208 TGTCAAAGCTCCCTTCATTTCTAAAT 59.279 34.615 0.00 0.00 0.00 1.40
338 1038 6.068010 TGTCAAAGCTCCCTTCATTTCTAAA 58.932 36.000 0.00 0.00 0.00 1.85
339 1039 5.630121 TGTCAAAGCTCCCTTCATTTCTAA 58.370 37.500 0.00 0.00 0.00 2.10
340 1040 5.241403 TGTCAAAGCTCCCTTCATTTCTA 57.759 39.130 0.00 0.00 0.00 2.10
341 1041 4.104383 TGTCAAAGCTCCCTTCATTTCT 57.896 40.909 0.00 0.00 0.00 2.52
342 1042 4.704057 AGATGTCAAAGCTCCCTTCATTTC 59.296 41.667 0.00 0.00 0.00 2.17
343 1043 4.670765 AGATGTCAAAGCTCCCTTCATTT 58.329 39.130 0.00 0.00 0.00 2.32
344 1044 4.018597 AGAGATGTCAAAGCTCCCTTCATT 60.019 41.667 0.00 0.00 0.00 2.57
345 1045 3.522750 AGAGATGTCAAAGCTCCCTTCAT 59.477 43.478 0.00 0.00 0.00 2.57
346 1046 2.909006 AGAGATGTCAAAGCTCCCTTCA 59.091 45.455 0.00 0.00 0.00 3.02
347 1047 3.530535 GAGAGATGTCAAAGCTCCCTTC 58.469 50.000 0.00 0.00 0.00 3.46
348 1048 2.238395 GGAGAGATGTCAAAGCTCCCTT 59.762 50.000 0.00 0.00 39.33 3.95
349 1049 1.836802 GGAGAGATGTCAAAGCTCCCT 59.163 52.381 0.00 0.00 39.33 4.20
350 1050 1.836802 AGGAGAGATGTCAAAGCTCCC 59.163 52.381 12.19 7.10 44.84 4.30
351 1051 3.492482 GCTAGGAGAGATGTCAAAGCTCC 60.492 52.174 0.00 0.00 44.24 4.70
352 1052 3.131933 TGCTAGGAGAGATGTCAAAGCTC 59.868 47.826 0.00 0.00 30.74 4.09
359 1059 0.031449 GCGGTGCTAGGAGAGATGTC 59.969 60.000 0.00 0.00 0.00 3.06
380 1080 3.760035 CCTCGCCACTACCGCAGT 61.760 66.667 0.00 0.00 38.32 4.40
415 1115 5.720041 AGTGAACCTGTAGGCTAACATAAGA 59.280 40.000 0.00 0.00 39.32 2.10
424 1124 2.903926 ACCTAAGTGAACCTGTAGGCT 58.096 47.619 0.00 0.00 37.25 4.58
437 1137 4.887655 GGCATGGCATAAAAGTACCTAAGT 59.112 41.667 15.47 0.00 0.00 2.24
439 1139 5.104109 AGAGGCATGGCATAAAAGTACCTAA 60.104 40.000 22.64 0.00 0.00 2.69
448 1148 4.164030 TCAGTCTTAGAGGCATGGCATAAA 59.836 41.667 22.64 10.60 0.00 1.40
467 1167 6.716628 ACCACAACTTAACATTCATGATCAGT 59.283 34.615 0.09 0.00 0.00 3.41
481 1181 5.995282 CCTCAGTTCATGTACCACAACTTAA 59.005 40.000 0.00 0.00 0.00 1.85
496 1196 2.368439 GTATGCATTGCCCTCAGTTCA 58.632 47.619 3.54 0.00 0.00 3.18
562 1262 8.288208 CAGTACTGTACTCTCTTCGTTCTTAAA 58.712 37.037 17.22 0.00 36.76 1.52
566 1269 5.179742 CACAGTACTGTACTCTCTTCGTTCT 59.820 44.000 27.48 0.00 42.83 3.01
572 1275 6.349445 GCACATACACAGTACTGTACTCTCTT 60.349 42.308 27.48 7.00 42.83 2.85
575 1278 4.142665 CGCACATACACAGTACTGTACTCT 60.143 45.833 27.48 12.86 42.83 3.24
601 1304 4.615949 CATCCATCACTATATAGAGCCGC 58.384 47.826 16.79 0.00 0.00 6.53
602 1305 4.098501 TGCATCCATCACTATATAGAGCCG 59.901 45.833 16.79 3.25 0.00 5.52
603 1306 5.355596 GTGCATCCATCACTATATAGAGCC 58.644 45.833 16.79 0.00 0.00 4.70
604 1307 5.039984 CGTGCATCCATCACTATATAGAGC 58.960 45.833 16.79 7.29 32.54 4.09
605 1308 5.451103 CCCGTGCATCCATCACTATATAGAG 60.451 48.000 16.79 8.77 32.54 2.43
606 1309 4.402474 CCCGTGCATCCATCACTATATAGA 59.598 45.833 16.79 0.00 32.54 1.98
607 1310 4.686972 CCCGTGCATCCATCACTATATAG 58.313 47.826 8.27 8.27 32.54 1.31
620 1495 4.778143 AGTTCCGGCCCGTGCATC 62.778 66.667 0.85 0.00 40.13 3.91
639 1514 2.151202 TCGTTCCAGCAAGAAATGACC 58.849 47.619 0.00 0.00 0.00 4.02
745 1626 3.205338 TCGTACTGGTTGTATAGCGCTA 58.795 45.455 21.30 21.30 33.23 4.26
877 1769 5.247337 TGGAATAAAAATGGGTGGAAGGAAC 59.753 40.000 0.00 0.00 0.00 3.62
923 1823 1.067915 TGCCGCCTTTATGCAAAGAAC 60.068 47.619 0.00 0.00 43.32 3.01
1238 2163 0.616891 ACCAATACCCGAACAGACCC 59.383 55.000 0.00 0.00 0.00 4.46
1267 2192 1.452108 GGCGAAGGAATCCCCACAG 60.452 63.158 0.00 0.00 37.41 3.66
1268 2193 2.674754 GGCGAAGGAATCCCCACA 59.325 61.111 0.00 0.00 37.41 4.17
1270 2195 3.792736 CCGGCGAAGGAATCCCCA 61.793 66.667 9.30 0.00 37.41 4.96
1285 2211 1.792057 GAATCACGCGCAAACACCG 60.792 57.895 5.73 0.00 0.00 4.94
1286 2212 1.792057 CGAATCACGCGCAAACACC 60.792 57.895 5.73 0.00 34.51 4.16
1287 2213 1.792057 CCGAATCACGCGCAAACAC 60.792 57.895 5.73 0.00 41.07 3.32
1288 2214 2.553770 CCGAATCACGCGCAAACA 59.446 55.556 5.73 0.00 41.07 2.83
1289 2215 2.869702 GCCGAATCACGCGCAAAC 60.870 61.111 5.73 0.00 41.07 2.93
1306 2232 1.512734 GCAGCACAAAATCGCGAGG 60.513 57.895 16.66 6.64 0.00 4.63
1307 2233 0.721154 TAGCAGCACAAAATCGCGAG 59.279 50.000 16.66 2.71 0.00 5.03
1334 2260 5.438761 AAAAATCACAGACCAGCACTAAC 57.561 39.130 0.00 0.00 0.00 2.34
1523 2450 5.289595 TCGCTCTCACGATTATTAATTGCT 58.710 37.500 0.00 0.00 37.09 3.91
1665 2592 0.324943 TGGCCAGAGTGGAAACTAGC 59.675 55.000 0.00 0.00 40.96 3.42
1667 2594 1.429930 TGTGGCCAGAGTGGAAACTA 58.570 50.000 5.11 0.00 40.96 2.24
1754 2681 0.389817 AGATTGTGCGCTCGTAGCAA 60.390 50.000 9.73 4.85 46.97 3.91
1785 2717 5.598417 TCACTTAGTGGCAGCTTCATAGATA 59.402 40.000 12.79 0.00 33.87 1.98
2116 3065 4.253685 TGAAAAGCAGACCTACACATAGC 58.746 43.478 0.00 0.00 0.00 2.97
2281 3230 8.460428 AGTGTAGCTCTAAGATGTTTGTAGTAC 58.540 37.037 0.00 0.00 0.00 2.73
2283 3232 7.469537 AGTGTAGCTCTAAGATGTTTGTAGT 57.530 36.000 0.00 0.00 0.00 2.73
2308 3257 4.093743 AGTTGAGGTGGTGTTTTCCTTTT 58.906 39.130 0.00 0.00 0.00 2.27
2354 3394 5.709164 AGCAGCACAAGATTCTCTTTTATGT 59.291 36.000 0.00 0.00 33.78 2.29
2364 3404 3.376234 TGAGCAATAGCAGCACAAGATTC 59.624 43.478 0.00 0.00 45.49 2.52
2559 3613 2.450476 AGCCTCCAATCATCCACAAAC 58.550 47.619 0.00 0.00 0.00 2.93
2765 3847 8.798402 ACTTTCGAAATGTATTAAATTGGTGGA 58.202 29.630 11.70 0.00 0.00 4.02
3122 4209 0.446222 CGTATGCGGGTGTTTTGAGG 59.554 55.000 0.00 0.00 0.00 3.86
3421 4517 1.001406 ATAGCCTAGCTAGCCAAAGCG 59.999 52.381 15.74 0.91 44.66 4.68
3445 4541 1.986575 CTAGCCAAAGCAGCTTCCGC 61.987 60.000 8.48 12.85 43.56 5.54
3447 4543 0.679321 AGCTAGCCAAAGCAGCTTCC 60.679 55.000 12.13 0.10 45.28 3.46
3468 4564 1.656818 GCAGCTTCCGCCAAATAGCA 61.657 55.000 0.00 0.00 36.11 3.49
3499 4595 7.818930 CCAAACAGCCAAACACTAATTAATCAT 59.181 33.333 0.00 0.00 0.00 2.45
3798 4894 9.256228 AGGACATAGTCTATTACTCTGTTTTCA 57.744 33.333 0.00 0.00 43.46 2.69
4095 5329 5.651612 ACCATACAAATCCTGGATCATGA 57.348 39.130 22.21 0.00 34.08 3.07
4390 5624 2.621526 CAACTTCGGGTGCTTTTTAGGT 59.378 45.455 0.00 0.00 0.00 3.08
4412 5646 8.563123 AATTAGGCCTCTTGAAGTTACTTTAC 57.437 34.615 9.68 0.00 0.00 2.01
4905 7761 1.072965 AGGGAGAAGAAACCTGTGCAG 59.927 52.381 0.00 0.00 32.26 4.41
5589 8768 1.229496 TAGTGAGGGAGGGCAGCAA 60.229 57.895 0.00 0.00 0.00 3.91
5956 9137 5.126222 CAGAAGTCTGAGTATAAGCCAGTGA 59.874 44.000 1.88 0.00 46.59 3.41
6026 9482 3.295093 GGGTACTAGAAGTGGGAGGTAC 58.705 54.545 0.00 0.00 0.00 3.34
6048 9504 0.176680 AGCGTGGCCTGAAGATACTG 59.823 55.000 3.32 0.00 0.00 2.74
6050 9506 0.108138 ACAGCGTGGCCTGAAGATAC 60.108 55.000 3.32 0.00 36.67 2.24
6059 9516 4.314440 TGGACAGACAGCGTGGCC 62.314 66.667 0.00 0.00 44.39 5.36
6153 9651 1.596954 GGTTTTAGCATACATGGCGCG 60.597 52.381 0.00 0.00 36.08 6.86
6176 9674 3.012047 GGTTTAACCCTACCCAAATCCCT 59.988 47.826 2.04 0.00 30.04 4.20
6189 9688 5.074804 ACATTCAAGTACCAGGTTTAACCC 58.925 41.667 10.93 0.00 39.75 4.11
6358 9865 9.394477 CATCAGTTATTATGATCAAGTTGCATG 57.606 33.333 0.00 0.00 35.20 4.06
6762 10298 7.329717 CAGGCTAGATATTGAATCGTAAGGAAC 59.670 40.741 0.00 0.00 38.47 3.62
6871 10409 6.604795 CAGAGAAATTGTGGGGTGAGATAAAT 59.395 38.462 0.00 0.00 0.00 1.40
6880 10418 3.222603 GTCAACAGAGAAATTGTGGGGT 58.777 45.455 0.00 0.00 0.00 4.95
7029 10568 4.894114 TCTCCTAGTTGCTGGTATAAGGAC 59.106 45.833 0.00 0.00 0.00 3.85
7209 10750 2.993899 CACTCCGTTCTGTACAATGGTC 59.006 50.000 0.00 0.00 34.43 4.02
7237 10778 2.640184 CGGATCAAGAACCTAAACCCC 58.360 52.381 0.00 0.00 0.00 4.95
7477 11019 3.301554 TGCCATTGCACCCCAACG 61.302 61.111 0.00 0.00 44.23 4.10
7551 11096 1.603802 AGACAACAGATGTTTGGCACG 59.396 47.619 0.00 0.00 44.12 5.34
7622 11176 3.686016 GCACCTCACATTTTAGGAAGGA 58.314 45.455 0.00 0.00 36.66 3.36
7637 11191 1.604278 AGAAAAGTCAAAGCGCACCTC 59.396 47.619 11.47 0.00 0.00 3.85
7761 11315 7.970061 GCATGCATCGAATATGTAACCAATAAT 59.030 33.333 14.21 0.00 0.00 1.28
7762 11316 7.040823 TGCATGCATCGAATATGTAACCAATAA 60.041 33.333 18.46 0.00 0.00 1.40
7763 11317 6.429385 TGCATGCATCGAATATGTAACCAATA 59.571 34.615 18.46 0.00 0.00 1.90
7767 11321 4.747540 TGCATGCATCGAATATGTAACC 57.252 40.909 18.46 0.00 0.00 2.85
7768 11322 7.627585 AAAATGCATGCATCGAATATGTAAC 57.372 32.000 32.25 0.00 35.31 2.50
7769 11323 9.396938 CTAAAAATGCATGCATCGAATATGTAA 57.603 29.630 32.25 9.70 35.31 2.41
7779 11338 5.192327 ACTAGCCTAAAAATGCATGCATC 57.808 39.130 32.25 18.03 35.31 3.91
7805 11364 9.505995 GTAACATAGACTAAGTTACTCTCAAGC 57.494 37.037 23.87 4.89 42.49 4.01
7837 11396 6.075984 ACCAGAACTATAGTACCCACTATGG 58.924 44.000 5.65 8.77 45.62 2.74
7838 11397 7.598759 AACCAGAACTATAGTACCCACTATG 57.401 40.000 5.65 0.00 45.62 2.23
7842 11401 7.713942 CCAATAAACCAGAACTATAGTACCCAC 59.286 40.741 5.65 0.00 0.00 4.61
7852 11411 6.636454 ATGGAGACCAATAAACCAGAACTA 57.364 37.500 0.00 0.00 36.95 2.24
7860 11422 9.139174 CACAAAATACAATGGAGACCAATAAAC 57.861 33.333 0.00 0.00 36.95 2.01
7951 11513 6.806249 TGGATTCGCATTTGAACATAGTTTTC 59.194 34.615 0.00 0.00 0.00 2.29
7953 11515 6.266168 TGGATTCGCATTTGAACATAGTTT 57.734 33.333 0.00 0.00 0.00 2.66
7957 11519 4.393371 TCGTTGGATTCGCATTTGAACATA 59.607 37.500 0.00 0.00 0.00 2.29
7968 11530 7.908193 ACAAAAATTATATCGTTGGATTCGC 57.092 32.000 0.00 0.00 34.00 4.70
7978 11540 8.619146 AGTGCATGTCAACAAAAATTATATCG 57.381 30.769 0.00 0.00 0.00 2.92
8044 11607 6.214412 TCCTGGTTTATTGGCCATTTTGTAAT 59.786 34.615 6.09 0.00 33.84 1.89
8058 11622 5.718607 ACTACTACCTTCGTCCTGGTTTATT 59.281 40.000 0.00 0.00 37.74 1.40
8090 11654 2.742428 AGGCTTGCATGATACCACAT 57.258 45.000 3.33 0.00 0.00 3.21
8095 11659 6.382869 AATAAGTGAAGGCTTGCATGATAC 57.617 37.500 3.46 0.00 0.00 2.24
8097 11661 5.927281 AAATAAGTGAAGGCTTGCATGAT 57.073 34.783 3.46 0.00 0.00 2.45
8112 11676 8.958506 ACAAGATGAGTCTACGTCTAAATAAGT 58.041 33.333 0.00 0.00 35.43 2.24
8113 11677 9.440784 GACAAGATGAGTCTACGTCTAAATAAG 57.559 37.037 0.00 0.00 35.60 1.73
8142 11706 0.035739 ACCGTAACATCACACACCCC 59.964 55.000 0.00 0.00 0.00 4.95
8187 11751 5.245751 TGGCAAGCAATTAATGAGGAAAGAA 59.754 36.000 0.00 0.00 0.00 2.52
8196 11760 5.110598 TGCTAATGTGGCAAGCAATTAATG 58.889 37.500 9.04 0.00 42.96 1.90
8197 11761 5.341872 TGCTAATGTGGCAAGCAATTAAT 57.658 34.783 9.04 0.00 42.96 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.