Multiple sequence alignment - TraesCS3D01G295100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G295100 chr3D 100.000 2828 0 0 1 2828 406774084 406771257 0.000000e+00 5223.0
1 TraesCS3D01G295100 chr3D 86.335 161 19 3 1364 1521 376169944 376169784 3.750000e-39 172.0
2 TraesCS3D01G295100 chr3B 93.152 1840 45 22 484 2302 532668252 532666473 0.000000e+00 2625.0
3 TraesCS3D01G295100 chr3B 89.922 516 28 6 2324 2828 532666321 532665819 0.000000e+00 643.0
4 TraesCS3D01G295100 chr3A 87.877 2021 106 59 804 2742 544969072 544971035 0.000000e+00 2246.0
5 TraesCS3D01G295100 chr3A 94.212 311 10 3 441 743 544968255 544968565 4.270000e-128 468.0
6 TraesCS3D01G295100 chr3A 81.922 437 76 2 1 436 428326167 428326601 1.600000e-97 366.0
7 TraesCS3D01G295100 chr3A 80.563 391 63 10 4 384 662900052 662899665 3.560000e-74 289.0
8 TraesCS3D01G295100 chr3A 100.000 37 0 0 2732 2768 544971037 544971073 5.060000e-08 69.4
9 TraesCS3D01G295100 chr7B 92.986 442 19 4 1283 1724 712841378 712841807 3.970000e-178 634.0
10 TraesCS3D01G295100 chr7B 92.802 389 16 1 1336 1724 712841862 712842238 1.140000e-153 553.0
11 TraesCS3D01G295100 chr5B 92.802 389 16 1 1336 1724 488559768 488560144 1.140000e-153 553.0
12 TraesCS3D01G295100 chr5B 80.723 415 72 7 1 410 26939390 26939801 1.640000e-82 316.0
13 TraesCS3D01G295100 chr1D 83.990 406 56 4 2 405 410494712 410495110 5.720000e-102 381.0
14 TraesCS3D01G295100 chr1D 88.318 214 19 3 1325 1532 426652217 426652430 4.680000e-63 252.0
15 TraesCS3D01G295100 chr4A 92.692 260 13 1 1465 1724 59318032 59318285 1.240000e-98 370.0
16 TraesCS3D01G295100 chr4A 92.920 226 13 1 1502 1727 58530198 58529976 2.720000e-85 326.0
17 TraesCS3D01G295100 chr4A 80.097 412 66 9 1 410 10632020 10631623 2.760000e-75 292.0
18 TraesCS3D01G295100 chr4D 81.473 421 75 3 3 421 458391355 458391774 2.700000e-90 342.0
19 TraesCS3D01G295100 chr7D 79.621 422 63 15 1 420 139177622 139178022 5.960000e-72 281.0
20 TraesCS3D01G295100 chrUn 79.075 411 74 9 2 410 224514866 224514466 3.590000e-69 272.0
21 TraesCS3D01G295100 chrUn 79.075 411 74 9 2 410 393128115 393128515 3.590000e-69 272.0
22 TraesCS3D01G295100 chr1B 88.785 214 18 5 1325 1532 576521677 576521890 1.010000e-64 257.0
23 TraesCS3D01G295100 chr1A 88.785 214 18 3 1325 1532 521738942 521739155 1.010000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G295100 chr3D 406771257 406774084 2827 True 5223.0 5223 100.000000 1 2828 1 chr3D.!!$R2 2827
1 TraesCS3D01G295100 chr3B 532665819 532668252 2433 True 1634.0 2625 91.537000 484 2828 2 chr3B.!!$R1 2344
2 TraesCS3D01G295100 chr3A 544968255 544971073 2818 False 927.8 2246 94.029667 441 2768 3 chr3A.!!$F2 2327
3 TraesCS3D01G295100 chr7B 712841378 712842238 860 False 593.5 634 92.894000 1283 1724 2 chr7B.!!$F1 441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.034337 TGGTAGTGAAAGTCCACGGC 59.966 55.0 0.0 0.0 41.67 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2952 0.515127 CATTACACAGGCGACGCAAA 59.485 50.0 23.09 5.86 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.636231 CGGGGTGCCACTTCCAGA 61.636 66.667 0.00 0.00 0.00 3.86
18 19 2.843545 GGGGTGCCACTTCCAGAA 59.156 61.111 0.00 0.00 0.00 3.02
19 20 1.603739 GGGGTGCCACTTCCAGAAC 60.604 63.158 0.00 0.00 0.00 3.01
20 21 1.603739 GGGTGCCACTTCCAGAACC 60.604 63.158 0.00 0.00 0.00 3.62
21 22 1.603739 GGTGCCACTTCCAGAACCC 60.604 63.158 0.00 0.00 0.00 4.11
22 23 1.603739 GTGCCACTTCCAGAACCCC 60.604 63.158 0.00 0.00 0.00 4.95
23 24 2.081787 TGCCACTTCCAGAACCCCA 61.082 57.895 0.00 0.00 0.00 4.96
24 25 1.384191 GCCACTTCCAGAACCCCAT 59.616 57.895 0.00 0.00 0.00 4.00
25 26 0.967380 GCCACTTCCAGAACCCCATG 60.967 60.000 0.00 0.00 0.00 3.66
26 27 0.323725 CCACTTCCAGAACCCCATGG 60.324 60.000 4.14 4.14 37.97 3.66
27 28 0.967380 CACTTCCAGAACCCCATGGC 60.967 60.000 6.09 0.00 36.47 4.40
28 29 1.380380 CTTCCAGAACCCCATGGCC 60.380 63.158 6.09 0.00 36.47 5.36
29 30 3.280938 TTCCAGAACCCCATGGCCG 62.281 63.158 6.09 0.10 36.47 6.13
30 31 4.820744 CCAGAACCCCATGGCCGG 62.821 72.222 6.09 5.77 33.59 6.13
56 57 4.208686 GAGGTGGACGGCGGCTAG 62.209 72.222 14.66 0.00 0.00 3.42
57 58 4.753662 AGGTGGACGGCGGCTAGA 62.754 66.667 14.66 0.00 0.00 2.43
58 59 4.208686 GGTGGACGGCGGCTAGAG 62.209 72.222 14.66 0.00 0.00 2.43
59 60 3.450115 GTGGACGGCGGCTAGAGT 61.450 66.667 14.66 0.00 0.00 3.24
60 61 2.678934 TGGACGGCGGCTAGAGTT 60.679 61.111 14.66 0.00 0.00 3.01
61 62 2.280552 TGGACGGCGGCTAGAGTTT 61.281 57.895 14.66 0.00 0.00 2.66
62 63 1.810030 GGACGGCGGCTAGAGTTTG 60.810 63.158 14.66 0.00 0.00 2.93
63 64 1.080025 GACGGCGGCTAGAGTTTGT 60.080 57.895 13.24 0.00 0.00 2.83
64 65 0.669625 GACGGCGGCTAGAGTTTGTT 60.670 55.000 13.24 0.00 0.00 2.83
65 66 0.949105 ACGGCGGCTAGAGTTTGTTG 60.949 55.000 13.24 0.00 0.00 3.33
66 67 0.949105 CGGCGGCTAGAGTTTGTTGT 60.949 55.000 7.61 0.00 0.00 3.32
67 68 0.796927 GGCGGCTAGAGTTTGTTGTC 59.203 55.000 0.00 0.00 0.00 3.18
68 69 1.608283 GGCGGCTAGAGTTTGTTGTCT 60.608 52.381 0.00 0.00 0.00 3.41
69 70 1.727335 GCGGCTAGAGTTTGTTGTCTC 59.273 52.381 0.00 0.00 0.00 3.36
70 71 2.338500 CGGCTAGAGTTTGTTGTCTCC 58.662 52.381 0.00 0.00 0.00 3.71
71 72 2.288825 CGGCTAGAGTTTGTTGTCTCCA 60.289 50.000 0.00 0.00 0.00 3.86
72 73 3.740115 GGCTAGAGTTTGTTGTCTCCAA 58.260 45.455 0.00 0.00 0.00 3.53
73 74 4.327680 GGCTAGAGTTTGTTGTCTCCAAT 58.672 43.478 0.00 0.00 32.11 3.16
74 75 4.154918 GGCTAGAGTTTGTTGTCTCCAATG 59.845 45.833 0.00 0.00 32.11 2.82
75 76 4.154918 GCTAGAGTTTGTTGTCTCCAATGG 59.845 45.833 0.00 0.00 32.11 3.16
76 77 4.437682 AGAGTTTGTTGTCTCCAATGGA 57.562 40.909 0.48 0.48 32.11 3.41
84 85 3.099171 CTCCAATGGAGGGGGCAA 58.901 61.111 21.25 0.00 45.43 4.52
85 86 1.380380 CTCCAATGGAGGGGGCAAC 60.380 63.158 21.25 0.00 45.43 4.17
86 87 2.755469 CCAATGGAGGGGGCAACG 60.755 66.667 0.00 0.00 37.60 4.10
87 88 2.755469 CAATGGAGGGGGCAACGG 60.755 66.667 0.00 0.00 37.60 4.44
88 89 3.264845 AATGGAGGGGGCAACGGT 61.265 61.111 0.00 0.00 37.60 4.83
89 90 3.583882 AATGGAGGGGGCAACGGTG 62.584 63.158 0.00 0.00 37.60 4.94
97 98 4.966787 GGCAACGGTGGGGAAGCA 62.967 66.667 0.90 0.00 0.00 3.91
98 99 3.365265 GCAACGGTGGGGAAGCAG 61.365 66.667 0.90 0.00 0.00 4.24
99 100 2.429930 CAACGGTGGGGAAGCAGA 59.570 61.111 0.00 0.00 0.00 4.26
100 101 1.002134 CAACGGTGGGGAAGCAGAT 60.002 57.895 0.00 0.00 0.00 2.90
101 102 1.002134 AACGGTGGGGAAGCAGATG 60.002 57.895 0.00 0.00 0.00 2.90
102 103 2.124570 CGGTGGGGAAGCAGATGG 60.125 66.667 0.00 0.00 0.00 3.51
103 104 2.276740 GGTGGGGAAGCAGATGGG 59.723 66.667 0.00 0.00 0.00 4.00
104 105 2.276740 GTGGGGAAGCAGATGGGG 59.723 66.667 0.00 0.00 0.00 4.96
105 106 2.127065 TGGGGAAGCAGATGGGGA 59.873 61.111 0.00 0.00 0.00 4.81
106 107 2.308722 TGGGGAAGCAGATGGGGAC 61.309 63.158 0.00 0.00 0.00 4.46
107 108 2.190578 GGGAAGCAGATGGGGACG 59.809 66.667 0.00 0.00 0.00 4.79
108 109 2.190578 GGAAGCAGATGGGGACGG 59.809 66.667 0.00 0.00 0.00 4.79
109 110 2.190578 GAAGCAGATGGGGACGGG 59.809 66.667 0.00 0.00 0.00 5.28
110 111 3.406595 GAAGCAGATGGGGACGGGG 62.407 68.421 0.00 0.00 0.00 5.73
111 112 3.943137 AAGCAGATGGGGACGGGGA 62.943 63.158 0.00 0.00 0.00 4.81
112 113 3.407967 GCAGATGGGGACGGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
113 114 2.911143 CAGATGGGGACGGGGAAG 59.089 66.667 0.00 0.00 0.00 3.46
114 115 1.995626 CAGATGGGGACGGGGAAGT 60.996 63.158 0.00 0.00 0.00 3.01
115 116 1.995626 AGATGGGGACGGGGAAGTG 60.996 63.158 0.00 0.00 0.00 3.16
116 117 3.015145 ATGGGGACGGGGAAGTGG 61.015 66.667 0.00 0.00 0.00 4.00
117 118 3.572715 ATGGGGACGGGGAAGTGGA 62.573 63.158 0.00 0.00 0.00 4.02
118 119 2.931649 GGGGACGGGGAAGTGGAA 60.932 66.667 0.00 0.00 0.00 3.53
119 120 2.669240 GGGACGGGGAAGTGGAAG 59.331 66.667 0.00 0.00 0.00 3.46
120 121 2.222013 GGGACGGGGAAGTGGAAGT 61.222 63.158 0.00 0.00 0.00 3.01
121 122 1.003718 GGACGGGGAAGTGGAAGTG 60.004 63.158 0.00 0.00 0.00 3.16
122 123 1.003718 GACGGGGAAGTGGAAGTGG 60.004 63.158 0.00 0.00 0.00 4.00
123 124 1.765597 GACGGGGAAGTGGAAGTGGT 61.766 60.000 0.00 0.00 0.00 4.16
124 125 0.472352 ACGGGGAAGTGGAAGTGGTA 60.472 55.000 0.00 0.00 0.00 3.25
125 126 0.249398 CGGGGAAGTGGAAGTGGTAG 59.751 60.000 0.00 0.00 0.00 3.18
126 127 1.359168 GGGGAAGTGGAAGTGGTAGT 58.641 55.000 0.00 0.00 0.00 2.73
127 128 1.003233 GGGGAAGTGGAAGTGGTAGTG 59.997 57.143 0.00 0.00 0.00 2.74
128 129 1.975680 GGGAAGTGGAAGTGGTAGTGA 59.024 52.381 0.00 0.00 0.00 3.41
129 130 2.370849 GGGAAGTGGAAGTGGTAGTGAA 59.629 50.000 0.00 0.00 0.00 3.18
130 131 3.181448 GGGAAGTGGAAGTGGTAGTGAAA 60.181 47.826 0.00 0.00 0.00 2.69
131 132 4.065789 GGAAGTGGAAGTGGTAGTGAAAG 58.934 47.826 0.00 0.00 0.00 2.62
132 133 4.444449 GGAAGTGGAAGTGGTAGTGAAAGT 60.444 45.833 0.00 0.00 0.00 2.66
133 134 4.338379 AGTGGAAGTGGTAGTGAAAGTC 57.662 45.455 0.00 0.00 0.00 3.01
134 135 3.071167 AGTGGAAGTGGTAGTGAAAGTCC 59.929 47.826 0.00 0.00 0.00 3.85
135 136 3.042682 TGGAAGTGGTAGTGAAAGTCCA 58.957 45.455 0.00 0.00 0.00 4.02
138 139 1.792006 GTGGTAGTGAAAGTCCACGG 58.208 55.000 0.00 0.00 40.36 4.94
139 140 0.034337 TGGTAGTGAAAGTCCACGGC 59.966 55.000 0.00 0.00 41.67 5.68
140 141 0.320697 GGTAGTGAAAGTCCACGGCT 59.679 55.000 0.00 0.00 41.67 5.52
141 142 1.270678 GGTAGTGAAAGTCCACGGCTT 60.271 52.381 0.00 0.00 41.67 4.35
142 143 2.490991 GTAGTGAAAGTCCACGGCTTT 58.509 47.619 5.53 5.53 41.67 3.51
143 144 1.308998 AGTGAAAGTCCACGGCTTTG 58.691 50.000 9.32 0.00 41.67 2.77
144 145 0.317854 GTGAAAGTCCACGGCTTTGC 60.318 55.000 9.32 0.00 36.43 3.68
145 146 1.285950 GAAAGTCCACGGCTTTGCC 59.714 57.895 9.32 0.00 46.75 4.52
167 168 3.427670 AAAAAGACGTGGCCGGTG 58.572 55.556 1.90 0.00 38.78 4.94
168 169 2.190841 AAAAAGACGTGGCCGGTGG 61.191 57.895 1.90 0.00 38.78 4.61
186 187 4.682334 CCATGTGGGTGGCTGGCA 62.682 66.667 0.00 0.00 31.43 4.92
187 188 2.363276 CATGTGGGTGGCTGGCAT 60.363 61.111 7.33 0.00 0.00 4.40
188 189 2.363276 ATGTGGGTGGCTGGCATG 60.363 61.111 7.33 0.00 0.00 4.06
191 192 4.617556 TGGGTGGCTGGCATGCAA 62.618 61.111 21.36 7.49 34.04 4.08
192 193 3.766691 GGGTGGCTGGCATGCAAG 61.767 66.667 18.41 18.41 34.04 4.01
193 194 4.446413 GGTGGCTGGCATGCAAGC 62.446 66.667 34.91 34.91 42.09 4.01
201 202 4.507879 GCATGCAAGCCCAATCAC 57.492 55.556 14.21 0.00 0.00 3.06
202 203 1.153509 GCATGCAAGCCCAATCACC 60.154 57.895 14.21 0.00 0.00 4.02
203 204 1.518774 CATGCAAGCCCAATCACCC 59.481 57.895 0.00 0.00 0.00 4.61
204 205 2.053865 ATGCAAGCCCAATCACCCG 61.054 57.895 0.00 0.00 0.00 5.28
205 206 2.676471 GCAAGCCCAATCACCCGT 60.676 61.111 0.00 0.00 0.00 5.28
206 207 2.993471 GCAAGCCCAATCACCCGTG 61.993 63.158 0.00 0.00 0.00 4.94
207 208 1.603455 CAAGCCCAATCACCCGTGT 60.603 57.895 0.00 0.00 0.00 4.49
208 209 1.603455 AAGCCCAATCACCCGTGTG 60.603 57.895 0.00 0.00 44.18 3.82
209 210 3.747976 GCCCAATCACCCGTGTGC 61.748 66.667 0.00 0.00 42.46 4.57
210 211 2.282110 CCCAATCACCCGTGTGCA 60.282 61.111 0.00 0.00 42.46 4.57
211 212 1.678635 CCCAATCACCCGTGTGCAT 60.679 57.895 0.00 0.00 42.46 3.96
212 213 1.250154 CCCAATCACCCGTGTGCATT 61.250 55.000 0.00 0.00 42.46 3.56
213 214 0.109179 CCAATCACCCGTGTGCATTG 60.109 55.000 12.62 12.62 42.46 2.82
214 215 0.880441 CAATCACCCGTGTGCATTGA 59.120 50.000 13.65 0.00 42.46 2.57
215 216 0.881118 AATCACCCGTGTGCATTGAC 59.119 50.000 0.00 0.00 42.46 3.18
216 217 0.036732 ATCACCCGTGTGCATTGACT 59.963 50.000 0.00 0.00 42.46 3.41
217 218 0.682292 TCACCCGTGTGCATTGACTA 59.318 50.000 0.00 0.00 42.46 2.59
218 219 1.078709 CACCCGTGTGCATTGACTAG 58.921 55.000 0.00 0.00 35.31 2.57
219 220 0.036388 ACCCGTGTGCATTGACTAGG 60.036 55.000 0.00 0.00 0.00 3.02
220 221 0.744414 CCCGTGTGCATTGACTAGGG 60.744 60.000 0.00 0.00 0.00 3.53
221 222 0.036388 CCGTGTGCATTGACTAGGGT 60.036 55.000 0.00 0.00 0.00 4.34
222 223 1.359848 CGTGTGCATTGACTAGGGTC 58.640 55.000 0.00 0.00 42.42 4.46
223 224 1.359848 GTGTGCATTGACTAGGGTCG 58.640 55.000 0.00 0.00 44.83 4.79
224 225 0.249120 TGTGCATTGACTAGGGTCGG 59.751 55.000 0.00 0.00 44.83 4.79
225 226 0.249398 GTGCATTGACTAGGGTCGGT 59.751 55.000 0.00 0.00 44.83 4.69
226 227 0.249120 TGCATTGACTAGGGTCGGTG 59.751 55.000 0.00 0.00 44.83 4.94
227 228 0.462047 GCATTGACTAGGGTCGGTGG 60.462 60.000 0.00 0.00 44.83 4.61
228 229 0.178068 CATTGACTAGGGTCGGTGGG 59.822 60.000 0.00 0.00 44.83 4.61
229 230 0.042131 ATTGACTAGGGTCGGTGGGA 59.958 55.000 0.00 0.00 44.83 4.37
230 231 0.613853 TTGACTAGGGTCGGTGGGAG 60.614 60.000 0.00 0.00 44.83 4.30
231 232 1.757340 GACTAGGGTCGGTGGGAGG 60.757 68.421 0.00 0.00 32.47 4.30
232 233 2.363361 CTAGGGTCGGTGGGAGGT 59.637 66.667 0.00 0.00 0.00 3.85
233 234 1.217057 ACTAGGGTCGGTGGGAGGTA 61.217 60.000 0.00 0.00 0.00 3.08
234 235 0.467659 CTAGGGTCGGTGGGAGGTAG 60.468 65.000 0.00 0.00 0.00 3.18
235 236 1.217057 TAGGGTCGGTGGGAGGTAGT 61.217 60.000 0.00 0.00 0.00 2.73
236 237 1.611556 GGGTCGGTGGGAGGTAGTT 60.612 63.158 0.00 0.00 0.00 2.24
237 238 1.595357 GGTCGGTGGGAGGTAGTTG 59.405 63.158 0.00 0.00 0.00 3.16
238 239 1.079336 GTCGGTGGGAGGTAGTTGC 60.079 63.158 0.00 0.00 0.00 4.17
239 240 1.534476 TCGGTGGGAGGTAGTTGCA 60.534 57.895 0.00 0.00 0.00 4.08
240 241 1.375523 CGGTGGGAGGTAGTTGCAC 60.376 63.158 0.00 0.00 0.00 4.57
241 242 1.375523 GGTGGGAGGTAGTTGCACG 60.376 63.158 0.00 0.00 0.00 5.34
242 243 1.375523 GTGGGAGGTAGTTGCACGG 60.376 63.158 0.00 0.00 0.00 4.94
243 244 2.436115 GGGAGGTAGTTGCACGGC 60.436 66.667 0.00 0.00 0.00 5.68
244 245 2.436115 GGAGGTAGTTGCACGGCC 60.436 66.667 0.00 0.00 0.00 6.13
245 246 2.813908 GAGGTAGTTGCACGGCCG 60.814 66.667 26.86 26.86 0.00 6.13
246 247 4.388499 AGGTAGTTGCACGGCCGG 62.388 66.667 31.76 19.49 0.00 6.13
266 267 4.838486 CGCGAGCCCGAGACAGAC 62.838 72.222 0.00 0.00 37.82 3.51
267 268 4.838486 GCGAGCCCGAGACAGACG 62.838 72.222 0.00 0.00 38.22 4.18
268 269 4.838486 CGAGCCCGAGACAGACGC 62.838 72.222 0.00 0.00 38.22 5.19
269 270 4.500116 GAGCCCGAGACAGACGCC 62.500 72.222 0.00 0.00 0.00 5.68
272 273 4.180946 CCCGAGACAGACGCCGAG 62.181 72.222 0.00 0.00 0.00 4.63
273 274 3.125573 CCGAGACAGACGCCGAGA 61.126 66.667 0.00 0.00 0.00 4.04
274 275 2.098680 CGAGACAGACGCCGAGAC 59.901 66.667 0.00 0.00 0.00 3.36
275 276 2.677979 CGAGACAGACGCCGAGACA 61.678 63.158 0.00 0.00 0.00 3.41
276 277 1.154188 GAGACAGACGCCGAGACAC 60.154 63.158 0.00 0.00 0.00 3.67
277 278 2.126424 GACAGACGCCGAGACACC 60.126 66.667 0.00 0.00 0.00 4.16
278 279 3.948086 GACAGACGCCGAGACACCG 62.948 68.421 0.00 0.00 0.00 4.94
295 296 4.203076 GCGTGCCCGTCCGTCTAT 62.203 66.667 0.00 0.00 36.15 1.98
296 297 2.493030 CGTGCCCGTCCGTCTATT 59.507 61.111 0.00 0.00 0.00 1.73
297 298 1.876714 CGTGCCCGTCCGTCTATTG 60.877 63.158 0.00 0.00 0.00 1.90
298 299 1.217244 GTGCCCGTCCGTCTATTGT 59.783 57.895 0.00 0.00 0.00 2.71
299 300 0.804933 GTGCCCGTCCGTCTATTGTC 60.805 60.000 0.00 0.00 0.00 3.18
300 301 1.227176 GCCCGTCCGTCTATTGTCC 60.227 63.158 0.00 0.00 0.00 4.02
301 302 1.065273 CCCGTCCGTCTATTGTCCG 59.935 63.158 0.00 0.00 0.00 4.79
302 303 1.588139 CCGTCCGTCTATTGTCCGC 60.588 63.158 0.00 0.00 0.00 5.54
303 304 1.937846 CGTCCGTCTATTGTCCGCG 60.938 63.158 0.00 0.00 0.00 6.46
304 305 2.103538 TCCGTCTATTGTCCGCGC 59.896 61.111 0.00 0.00 0.00 6.86
305 306 2.202690 CCGTCTATTGTCCGCGCA 60.203 61.111 8.75 0.00 0.00 6.09
306 307 2.230940 CCGTCTATTGTCCGCGCAG 61.231 63.158 8.75 0.00 0.00 5.18
307 308 2.230940 CGTCTATTGTCCGCGCAGG 61.231 63.158 8.75 10.32 42.97 4.85
308 309 2.202878 TCTATTGTCCGCGCAGGC 60.203 61.111 8.75 0.00 40.77 4.85
328 329 2.974165 CGCAAAGCTCGCTTAATTAGG 58.026 47.619 4.37 0.00 34.84 2.69
329 330 2.720933 GCAAAGCTCGCTTAATTAGGC 58.279 47.619 9.43 9.43 34.84 3.93
338 339 4.795970 CGCTTAATTAGGCGTCAAGAAT 57.204 40.909 28.00 0.00 45.15 2.40
339 340 4.518217 CGCTTAATTAGGCGTCAAGAATG 58.482 43.478 28.00 2.95 45.15 2.67
340 341 4.552767 CGCTTAATTAGGCGTCAAGAATGG 60.553 45.833 28.00 2.29 45.15 3.16
341 342 4.261197 GCTTAATTAGGCGTCAAGAATGGG 60.261 45.833 3.59 0.00 0.00 4.00
342 343 3.366052 AATTAGGCGTCAAGAATGGGT 57.634 42.857 0.00 0.00 0.00 4.51
343 344 2.871096 TTAGGCGTCAAGAATGGGTT 57.129 45.000 0.00 0.00 0.00 4.11
344 345 2.107950 TAGGCGTCAAGAATGGGTTG 57.892 50.000 0.00 0.00 0.00 3.77
345 346 0.609131 AGGCGTCAAGAATGGGTTGG 60.609 55.000 0.00 0.00 0.00 3.77
346 347 1.595093 GGCGTCAAGAATGGGTTGGG 61.595 60.000 0.00 0.00 0.00 4.12
347 348 1.883021 CGTCAAGAATGGGTTGGGC 59.117 57.895 0.00 0.00 0.00 5.36
348 349 1.595093 CGTCAAGAATGGGTTGGGCC 61.595 60.000 0.00 0.00 0.00 5.80
349 350 1.304052 TCAAGAATGGGTTGGGCCG 60.304 57.895 0.00 0.00 38.44 6.13
350 351 1.304052 CAAGAATGGGTTGGGCCGA 60.304 57.895 0.00 0.00 38.44 5.54
351 352 0.897863 CAAGAATGGGTTGGGCCGAA 60.898 55.000 0.00 0.00 38.44 4.30
352 353 0.898326 AAGAATGGGTTGGGCCGAAC 60.898 55.000 21.43 21.43 38.44 3.95
353 354 2.675075 AATGGGTTGGGCCGAACG 60.675 61.111 22.45 0.00 38.44 3.95
354 355 3.198953 AATGGGTTGGGCCGAACGA 62.199 57.895 22.45 13.04 38.44 3.85
355 356 2.700407 AATGGGTTGGGCCGAACGAA 62.700 55.000 22.45 14.21 38.44 3.85
356 357 2.595172 GGGTTGGGCCGAACGAAA 60.595 61.111 22.45 0.00 38.44 3.46
357 358 2.194889 GGGTTGGGCCGAACGAAAA 61.195 57.895 22.45 0.00 38.44 2.29
358 359 1.734748 GGTTGGGCCGAACGAAAAA 59.265 52.632 22.45 0.00 0.00 1.94
359 360 0.595567 GGTTGGGCCGAACGAAAAAC 60.596 55.000 22.45 5.64 0.00 2.43
360 361 0.100861 GTTGGGCCGAACGAAAAACA 59.899 50.000 15.29 0.00 0.00 2.83
361 362 0.815734 TTGGGCCGAACGAAAAACAA 59.184 45.000 0.00 0.00 0.00 2.83
362 363 0.815734 TGGGCCGAACGAAAAACAAA 59.184 45.000 0.00 0.00 0.00 2.83
363 364 1.202203 GGGCCGAACGAAAAACAAAC 58.798 50.000 0.00 0.00 0.00 2.93
364 365 0.841356 GGCCGAACGAAAAACAAACG 59.159 50.000 0.00 0.00 0.00 3.60
365 366 1.531470 GGCCGAACGAAAAACAAACGA 60.531 47.619 0.00 0.00 0.00 3.85
366 367 1.771291 GCCGAACGAAAAACAAACGAG 59.229 47.619 0.00 0.00 0.00 4.18
367 368 2.537328 GCCGAACGAAAAACAAACGAGA 60.537 45.455 0.00 0.00 0.00 4.04
368 369 3.847105 GCCGAACGAAAAACAAACGAGAT 60.847 43.478 0.00 0.00 0.00 2.75
369 370 4.276460 CCGAACGAAAAACAAACGAGATT 58.724 39.130 0.00 0.00 0.00 2.40
370 371 4.731480 CCGAACGAAAAACAAACGAGATTT 59.269 37.500 0.00 0.00 0.00 2.17
371 372 5.902981 CCGAACGAAAAACAAACGAGATTTA 59.097 36.000 0.00 0.00 0.00 1.40
372 373 6.411492 CCGAACGAAAAACAAACGAGATTTAA 59.589 34.615 0.00 0.00 0.00 1.52
373 374 7.356154 CCGAACGAAAAACAAACGAGATTTAAG 60.356 37.037 0.00 0.00 0.00 1.85
374 375 7.356154 CGAACGAAAAACAAACGAGATTTAAGG 60.356 37.037 0.00 0.00 0.00 2.69
375 376 7.018635 ACGAAAAACAAACGAGATTTAAGGA 57.981 32.000 0.00 0.00 0.00 3.36
376 377 7.645402 ACGAAAAACAAACGAGATTTAAGGAT 58.355 30.769 0.00 0.00 0.00 3.24
377 378 7.589954 ACGAAAAACAAACGAGATTTAAGGATG 59.410 33.333 0.00 0.00 0.00 3.51
378 379 7.060633 CGAAAAACAAACGAGATTTAAGGATGG 59.939 37.037 0.00 0.00 0.00 3.51
379 380 5.897377 AACAAACGAGATTTAAGGATGGG 57.103 39.130 0.00 0.00 0.00 4.00
380 381 4.918588 ACAAACGAGATTTAAGGATGGGT 58.081 39.130 0.00 0.00 0.00 4.51
381 382 5.321927 ACAAACGAGATTTAAGGATGGGTT 58.678 37.500 0.00 0.00 0.00 4.11
382 383 6.478129 ACAAACGAGATTTAAGGATGGGTTA 58.522 36.000 0.00 0.00 0.00 2.85
383 384 6.373495 ACAAACGAGATTTAAGGATGGGTTAC 59.627 38.462 0.00 0.00 0.00 2.50
384 385 4.690122 ACGAGATTTAAGGATGGGTTACG 58.310 43.478 0.00 0.00 0.00 3.18
385 386 3.493503 CGAGATTTAAGGATGGGTTACGC 59.506 47.826 0.00 0.00 0.00 4.42
386 387 4.448210 GAGATTTAAGGATGGGTTACGCA 58.552 43.478 4.24 4.24 0.00 5.24
387 388 5.048846 AGATTTAAGGATGGGTTACGCAT 57.951 39.130 14.70 14.70 39.69 4.73
388 389 5.445964 AGATTTAAGGATGGGTTACGCATT 58.554 37.500 15.82 4.38 37.16 3.56
389 390 4.974368 TTTAAGGATGGGTTACGCATTG 57.026 40.909 15.82 0.00 37.16 2.82
390 391 1.762708 AAGGATGGGTTACGCATTGG 58.237 50.000 15.82 0.00 37.16 3.16
391 392 0.106719 AGGATGGGTTACGCATTGGG 60.107 55.000 15.82 0.00 37.16 4.12
392 393 0.395173 GGATGGGTTACGCATTGGGT 60.395 55.000 15.82 11.38 37.16 4.51
393 394 1.021968 GATGGGTTACGCATTGGGTC 58.978 55.000 15.82 0.55 37.16 4.46
394 395 0.746563 ATGGGTTACGCATTGGGTCG 60.747 55.000 9.90 0.00 33.22 4.79
395 396 2.110352 GGGTTACGCATTGGGTCGG 61.110 63.158 9.90 0.00 0.00 4.79
396 397 2.757056 GGTTACGCATTGGGTCGGC 61.757 63.158 9.90 2.23 0.00 5.54
397 398 1.743995 GTTACGCATTGGGTCGGCT 60.744 57.895 9.90 0.00 0.00 5.52
398 399 1.448893 TTACGCATTGGGTCGGCTC 60.449 57.895 9.90 0.00 0.00 4.70
399 400 3.709880 TACGCATTGGGTCGGCTCG 62.710 63.158 9.90 0.00 0.00 5.03
401 402 3.195698 GCATTGGGTCGGCTCGTC 61.196 66.667 0.00 0.00 0.00 4.20
402 403 2.579201 CATTGGGTCGGCTCGTCT 59.421 61.111 0.00 0.00 0.00 4.18
403 404 1.811266 CATTGGGTCGGCTCGTCTG 60.811 63.158 0.00 0.00 0.00 3.51
404 405 2.283529 ATTGGGTCGGCTCGTCTGT 61.284 57.895 0.00 0.00 0.00 3.41
405 406 2.227089 ATTGGGTCGGCTCGTCTGTC 62.227 60.000 0.00 0.00 0.00 3.51
406 407 4.131088 GGGTCGGCTCGTCTGTCC 62.131 72.222 0.00 0.00 0.00 4.02
407 408 4.477975 GGTCGGCTCGTCTGTCCG 62.478 72.222 0.00 0.00 44.16 4.79
408 409 3.735029 GTCGGCTCGTCTGTCCGT 61.735 66.667 0.00 0.00 43.35 4.69
409 410 2.981909 TCGGCTCGTCTGTCCGTT 60.982 61.111 0.00 0.00 43.35 4.44
410 411 2.504244 CGGCTCGTCTGTCCGTTC 60.504 66.667 0.00 0.00 38.47 3.95
411 412 2.504244 GGCTCGTCTGTCCGTTCG 60.504 66.667 0.00 0.00 0.00 3.95
412 413 2.254651 GCTCGTCTGTCCGTTCGT 59.745 61.111 0.00 0.00 0.00 3.85
413 414 2.081212 GCTCGTCTGTCCGTTCGTG 61.081 63.158 0.00 0.00 0.00 4.35
414 415 2.050714 TCGTCTGTCCGTTCGTGC 60.051 61.111 0.00 0.00 0.00 5.34
415 416 3.103911 CGTCTGTCCGTTCGTGCC 61.104 66.667 0.00 0.00 0.00 5.01
416 417 2.737376 GTCTGTCCGTTCGTGCCC 60.737 66.667 0.00 0.00 0.00 5.36
417 418 3.998672 TCTGTCCGTTCGTGCCCC 61.999 66.667 0.00 0.00 0.00 5.80
418 419 4.308458 CTGTCCGTTCGTGCCCCA 62.308 66.667 0.00 0.00 0.00 4.96
419 420 3.818121 CTGTCCGTTCGTGCCCCAA 62.818 63.158 0.00 0.00 0.00 4.12
420 421 3.351416 GTCCGTTCGTGCCCCAAC 61.351 66.667 0.00 0.00 0.00 3.77
421 422 3.552384 TCCGTTCGTGCCCCAACT 61.552 61.111 0.00 0.00 0.00 3.16
422 423 3.047877 CCGTTCGTGCCCCAACTC 61.048 66.667 0.00 0.00 0.00 3.01
423 424 3.047877 CGTTCGTGCCCCAACTCC 61.048 66.667 0.00 0.00 0.00 3.85
424 425 3.047877 GTTCGTGCCCCAACTCCG 61.048 66.667 0.00 0.00 0.00 4.63
425 426 3.235481 TTCGTGCCCCAACTCCGA 61.235 61.111 0.00 0.00 0.00 4.55
426 427 3.524648 TTCGTGCCCCAACTCCGAC 62.525 63.158 0.00 0.00 0.00 4.79
451 452 0.249489 CGGAGTTGGCCTTAGATCCG 60.249 60.000 16.87 16.87 43.09 4.18
473 474 0.254178 ATCGGTTCTTGCAGCAGGAT 59.746 50.000 8.24 0.00 0.00 3.24
520 521 3.192422 AGCATAAAGGCGCAAAATACACA 59.808 39.130 10.83 0.00 39.27 3.72
671 681 2.039818 TCCCGCTACAACAACAACAA 57.960 45.000 0.00 0.00 0.00 2.83
717 727 1.327690 CGGAGATTCCCCTCGAACCA 61.328 60.000 0.00 0.00 34.08 3.67
733 743 1.321474 ACCACAAACTCCACATGCAG 58.679 50.000 0.00 0.00 0.00 4.41
754 764 8.259049 TGCAGATCAAAATCAAATCAAAATCC 57.741 30.769 0.00 0.00 34.07 3.01
1281 1767 2.202756 GGACATGGACTCGTCGCC 60.203 66.667 0.00 0.00 32.74 5.54
1456 1942 2.670934 CGCCACTTCTGCAAGGCT 60.671 61.111 10.68 0.00 44.85 4.58
1575 2486 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1576 2487 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1577 2488 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1578 2489 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1579 2490 2.203337 CACCACCACCACCACCAG 60.203 66.667 0.00 0.00 0.00 4.00
1580 2491 4.204028 ACCACCACCACCACCAGC 62.204 66.667 0.00 0.00 0.00 4.85
1720 2631 1.720805 CCGACACAACCATTGATCGA 58.279 50.000 16.20 0.00 41.71 3.59
1729 2640 1.209275 CCATTGATCGACTCGTCCGC 61.209 60.000 0.00 0.00 0.00 5.54
1820 2739 2.022240 GAGACGGGAAGGCTGGCTAG 62.022 65.000 3.41 0.00 39.26 3.42
1821 2740 2.284699 ACGGGAAGGCTGGCTAGT 60.285 61.111 3.41 0.00 0.00 2.57
1822 2741 1.001248 ACGGGAAGGCTGGCTAGTA 59.999 57.895 3.41 0.00 0.00 1.82
1823 2742 0.398664 ACGGGAAGGCTGGCTAGTAT 60.399 55.000 3.41 0.00 0.00 2.12
1824 2743 0.759346 CGGGAAGGCTGGCTAGTATT 59.241 55.000 3.41 0.00 0.00 1.89
1825 2744 1.968493 CGGGAAGGCTGGCTAGTATTA 59.032 52.381 3.41 0.00 0.00 0.98
1826 2745 2.367567 CGGGAAGGCTGGCTAGTATTAA 59.632 50.000 3.41 0.00 0.00 1.40
1827 2746 3.008049 CGGGAAGGCTGGCTAGTATTAAT 59.992 47.826 3.41 0.00 0.00 1.40
1828 2747 4.222145 CGGGAAGGCTGGCTAGTATTAATA 59.778 45.833 3.41 0.00 0.00 0.98
1907 2826 7.914427 ATGTCCCTTTACTTTTCTTTTCCTT 57.086 32.000 0.00 0.00 0.00 3.36
1908 2827 7.107639 TGTCCCTTTACTTTTCTTTTCCTTG 57.892 36.000 0.00 0.00 0.00 3.61
1948 2877 5.012893 AGCTTCCCTCTTGTTAATTCCTTG 58.987 41.667 0.00 0.00 0.00 3.61
1958 2893 7.676947 TCTTGTTAATTCCTTGCTACTGTAGT 58.323 34.615 15.71 0.00 0.00 2.73
2014 2952 1.052124 TCTTGGGTTGGTCCGTCAGT 61.052 55.000 0.00 0.00 37.00 3.41
2063 3008 1.153628 AGATCAGGTTGCGCGGTAC 60.154 57.895 8.83 0.02 0.00 3.34
2111 3069 3.011144 TGTCCCATTCCCATTGTGTATGT 59.989 43.478 0.00 0.00 31.99 2.29
2165 3123 2.038659 TGAGTGTGATGCGATCCCATA 58.961 47.619 0.00 0.00 0.00 2.74
2256 3220 2.536725 CGAAGGATGATGATGGCCG 58.463 57.895 0.00 0.00 0.00 6.13
2257 3221 0.250038 CGAAGGATGATGATGGCCGT 60.250 55.000 0.00 0.00 0.00 5.68
2258 3222 1.517242 GAAGGATGATGATGGCCGTC 58.483 55.000 18.69 18.69 0.00 4.79
2259 3223 0.109342 AAGGATGATGATGGCCGTCC 59.891 55.000 22.40 8.36 38.45 4.79
2280 3245 1.749258 CTTTCTTACGGGGGCTGGC 60.749 63.158 0.00 0.00 0.00 4.85
2281 3246 2.478335 CTTTCTTACGGGGGCTGGCA 62.478 60.000 2.88 0.00 0.00 4.92
2352 3463 4.092968 GCAAAAATGTACTCTACCACTCCG 59.907 45.833 0.00 0.00 0.00 4.63
2375 3486 5.680229 CGGTGTGTACTCTTACATTATCGTC 59.320 44.000 0.00 0.00 40.40 4.20
2378 3489 4.375117 GTGTACTCTTACATTATCGTCGCG 59.625 45.833 0.00 0.00 40.40 5.87
2428 3539 1.113517 TGCGGCCTGGTAGGAGTATC 61.114 60.000 0.00 0.00 37.67 2.24
2481 3600 1.203600 GCTAGCTCGCGCAAGTAGAC 61.204 60.000 8.75 0.00 39.10 2.59
2517 3645 9.192642 TGTGCCAGTTTAATATCACTACTAGTA 57.807 33.333 1.89 1.89 0.00 1.82
2548 3676 6.603237 TCAATTGATTGATTACCGTAGCAG 57.397 37.500 3.38 0.00 41.51 4.24
2549 3677 5.007626 TCAATTGATTGATTACCGTAGCAGC 59.992 40.000 3.38 0.00 41.51 5.25
2582 3720 7.807907 ACTTGTGAAGCTTGTTTAAATAATCCG 59.192 33.333 2.10 0.00 0.00 4.18
2618 3762 2.182827 TGTGCTGTAGCCTGATTCTCT 58.817 47.619 0.80 0.00 41.18 3.10
2619 3763 2.568956 TGTGCTGTAGCCTGATTCTCTT 59.431 45.455 0.80 0.00 41.18 2.85
2724 3868 3.304057 CGTCACAAAGGGAAAGAGAAAGC 60.304 47.826 0.00 0.00 0.00 3.51
2726 3870 2.618709 CACAAAGGGAAAGAGAAAGCGT 59.381 45.455 0.00 0.00 0.00 5.07
2804 3963 3.258123 TGCACTGGGAAAAAGATAAAGGC 59.742 43.478 0.00 0.00 0.00 4.35
2805 3964 3.258123 GCACTGGGAAAAAGATAAAGGCA 59.742 43.478 0.00 0.00 0.00 4.75
2815 3974 5.651387 AAAGATAAAGGCAGCTTTTCCTC 57.349 39.130 5.64 5.24 30.20 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.190738 TTCTGGAAGTGGCACCCCG 62.191 63.158 15.27 11.92 33.76 5.73
1 2 1.603739 GTTCTGGAAGTGGCACCCC 60.604 63.158 15.27 16.27 33.76 4.95
2 3 1.603739 GGTTCTGGAAGTGGCACCC 60.604 63.158 15.27 10.10 33.76 4.61
4 5 1.603739 GGGGTTCTGGAAGTGGCAC 60.604 63.158 10.29 10.29 33.76 5.01
5 6 1.434513 ATGGGGTTCTGGAAGTGGCA 61.435 55.000 0.00 0.00 33.76 4.92
6 7 0.967380 CATGGGGTTCTGGAAGTGGC 60.967 60.000 0.00 0.00 33.76 5.01
7 8 0.323725 CCATGGGGTTCTGGAAGTGG 60.324 60.000 2.85 0.00 34.24 4.00
8 9 0.967380 GCCATGGGGTTCTGGAAGTG 60.967 60.000 15.13 0.00 34.24 3.16
9 10 1.384191 GCCATGGGGTTCTGGAAGT 59.616 57.895 15.13 0.00 34.24 3.01
10 11 1.380380 GGCCATGGGGTTCTGGAAG 60.380 63.158 15.13 0.00 34.24 3.46
11 12 2.770130 GGCCATGGGGTTCTGGAA 59.230 61.111 15.13 0.00 34.24 3.53
12 13 3.727258 CGGCCATGGGGTTCTGGA 61.727 66.667 15.13 0.00 34.24 3.86
13 14 4.820744 CCGGCCATGGGGTTCTGG 62.821 72.222 15.13 7.24 36.17 3.86
39 40 4.208686 CTAGCCGCCGTCCACCTC 62.209 72.222 0.00 0.00 0.00 3.85
40 41 4.753662 TCTAGCCGCCGTCCACCT 62.754 66.667 0.00 0.00 0.00 4.00
41 42 4.208686 CTCTAGCCGCCGTCCACC 62.209 72.222 0.00 0.00 0.00 4.61
42 43 2.502692 AAACTCTAGCCGCCGTCCAC 62.503 60.000 0.00 0.00 0.00 4.02
43 44 2.280552 AAACTCTAGCCGCCGTCCA 61.281 57.895 0.00 0.00 0.00 4.02
44 45 1.810030 CAAACTCTAGCCGCCGTCC 60.810 63.158 0.00 0.00 0.00 4.79
45 46 0.669625 AACAAACTCTAGCCGCCGTC 60.670 55.000 0.00 0.00 0.00 4.79
46 47 0.949105 CAACAAACTCTAGCCGCCGT 60.949 55.000 0.00 0.00 0.00 5.68
47 48 0.949105 ACAACAAACTCTAGCCGCCG 60.949 55.000 0.00 0.00 0.00 6.46
48 49 0.796927 GACAACAAACTCTAGCCGCC 59.203 55.000 0.00 0.00 0.00 6.13
49 50 1.727335 GAGACAACAAACTCTAGCCGC 59.273 52.381 0.00 0.00 0.00 6.53
50 51 2.288825 TGGAGACAACAAACTCTAGCCG 60.289 50.000 0.00 0.00 37.44 5.52
51 52 3.402628 TGGAGACAACAAACTCTAGCC 57.597 47.619 0.00 0.00 37.44 3.93
68 69 2.770130 GTTGCCCCCTCCATTGGA 59.230 61.111 5.05 5.05 0.00 3.53
69 70 2.755469 CGTTGCCCCCTCCATTGG 60.755 66.667 0.00 0.00 0.00 3.16
70 71 2.755469 CCGTTGCCCCCTCCATTG 60.755 66.667 0.00 0.00 0.00 2.82
71 72 3.264845 ACCGTTGCCCCCTCCATT 61.265 61.111 0.00 0.00 0.00 3.16
72 73 4.047125 CACCGTTGCCCCCTCCAT 62.047 66.667 0.00 0.00 0.00 3.41
80 81 4.966787 TGCTTCCCCACCGTTGCC 62.967 66.667 0.00 0.00 0.00 4.52
81 82 3.365265 CTGCTTCCCCACCGTTGC 61.365 66.667 0.00 0.00 0.00 4.17
82 83 1.002134 ATCTGCTTCCCCACCGTTG 60.002 57.895 0.00 0.00 0.00 4.10
83 84 1.002134 CATCTGCTTCCCCACCGTT 60.002 57.895 0.00 0.00 0.00 4.44
84 85 2.671070 CATCTGCTTCCCCACCGT 59.329 61.111 0.00 0.00 0.00 4.83
85 86 2.124570 CCATCTGCTTCCCCACCG 60.125 66.667 0.00 0.00 0.00 4.94
86 87 2.276740 CCCATCTGCTTCCCCACC 59.723 66.667 0.00 0.00 0.00 4.61
87 88 2.276740 CCCCATCTGCTTCCCCAC 59.723 66.667 0.00 0.00 0.00 4.61
88 89 2.127065 TCCCCATCTGCTTCCCCA 59.873 61.111 0.00 0.00 0.00 4.96
89 90 2.597903 GTCCCCATCTGCTTCCCC 59.402 66.667 0.00 0.00 0.00 4.81
90 91 2.190578 CGTCCCCATCTGCTTCCC 59.809 66.667 0.00 0.00 0.00 3.97
91 92 2.190578 CCGTCCCCATCTGCTTCC 59.809 66.667 0.00 0.00 0.00 3.46
92 93 2.190578 CCCGTCCCCATCTGCTTC 59.809 66.667 0.00 0.00 0.00 3.86
93 94 3.411517 CCCCGTCCCCATCTGCTT 61.412 66.667 0.00 0.00 0.00 3.91
94 95 3.943137 TTCCCCGTCCCCATCTGCT 62.943 63.158 0.00 0.00 0.00 4.24
95 96 3.406595 CTTCCCCGTCCCCATCTGC 62.407 68.421 0.00 0.00 0.00 4.26
96 97 1.995626 ACTTCCCCGTCCCCATCTG 60.996 63.158 0.00 0.00 0.00 2.90
97 98 1.995626 CACTTCCCCGTCCCCATCT 60.996 63.158 0.00 0.00 0.00 2.90
98 99 2.590092 CACTTCCCCGTCCCCATC 59.410 66.667 0.00 0.00 0.00 3.51
99 100 3.015145 CCACTTCCCCGTCCCCAT 61.015 66.667 0.00 0.00 0.00 4.00
100 101 3.795977 TTCCACTTCCCCGTCCCCA 62.796 63.158 0.00 0.00 0.00 4.96
101 102 2.931649 TTCCACTTCCCCGTCCCC 60.932 66.667 0.00 0.00 0.00 4.81
102 103 2.222013 ACTTCCACTTCCCCGTCCC 61.222 63.158 0.00 0.00 0.00 4.46
103 104 1.003718 CACTTCCACTTCCCCGTCC 60.004 63.158 0.00 0.00 0.00 4.79
104 105 1.003718 CCACTTCCACTTCCCCGTC 60.004 63.158 0.00 0.00 0.00 4.79
105 106 0.472352 TACCACTTCCACTTCCCCGT 60.472 55.000 0.00 0.00 0.00 5.28
106 107 0.249398 CTACCACTTCCACTTCCCCG 59.751 60.000 0.00 0.00 0.00 5.73
107 108 1.003233 CACTACCACTTCCACTTCCCC 59.997 57.143 0.00 0.00 0.00 4.81
108 109 1.975680 TCACTACCACTTCCACTTCCC 59.024 52.381 0.00 0.00 0.00 3.97
109 110 3.764237 TTCACTACCACTTCCACTTCC 57.236 47.619 0.00 0.00 0.00 3.46
110 111 4.704965 ACTTTCACTACCACTTCCACTTC 58.295 43.478 0.00 0.00 0.00 3.01
111 112 4.444449 GGACTTTCACTACCACTTCCACTT 60.444 45.833 0.00 0.00 0.00 3.16
112 113 3.071167 GGACTTTCACTACCACTTCCACT 59.929 47.826 0.00 0.00 0.00 4.00
113 114 3.181458 TGGACTTTCACTACCACTTCCAC 60.181 47.826 0.00 0.00 0.00 4.02
114 115 3.042682 TGGACTTTCACTACCACTTCCA 58.957 45.455 0.00 0.00 0.00 3.53
115 116 3.400255 GTGGACTTTCACTACCACTTCC 58.600 50.000 0.00 0.00 46.14 3.46
119 120 1.792006 CCGTGGACTTTCACTACCAC 58.208 55.000 0.00 0.00 46.16 4.16
120 121 0.034337 GCCGTGGACTTTCACTACCA 59.966 55.000 0.00 0.00 35.63 3.25
121 122 0.320697 AGCCGTGGACTTTCACTACC 59.679 55.000 0.00 0.00 35.63 3.18
122 123 2.165319 AAGCCGTGGACTTTCACTAC 57.835 50.000 0.00 0.00 35.63 2.73
123 124 2.489971 CAAAGCCGTGGACTTTCACTA 58.510 47.619 5.65 0.00 35.19 2.74
124 125 1.308998 CAAAGCCGTGGACTTTCACT 58.691 50.000 5.65 0.00 35.19 3.41
125 126 0.317854 GCAAAGCCGTGGACTTTCAC 60.318 55.000 5.65 0.00 35.19 3.18
126 127 1.452145 GGCAAAGCCGTGGACTTTCA 61.452 55.000 0.00 0.00 39.62 2.69
127 128 1.285950 GGCAAAGCCGTGGACTTTC 59.714 57.895 0.00 3.00 39.62 2.62
128 129 3.443588 GGCAAAGCCGTGGACTTT 58.556 55.556 0.00 0.00 39.62 2.66
150 151 2.190841 CCACCGGCCACGTCTTTTT 61.191 57.895 0.00 0.00 38.78 1.94
151 152 2.593436 CCACCGGCCACGTCTTTT 60.593 61.111 0.00 0.00 38.78 2.27
169 170 3.968837 ATGCCAGCCACCCACATGG 62.969 63.158 0.00 0.00 43.26 3.66
170 171 2.363276 ATGCCAGCCACCCACATG 60.363 61.111 0.00 0.00 0.00 3.21
171 172 2.363276 CATGCCAGCCACCCACAT 60.363 61.111 0.00 0.00 0.00 3.21
174 175 4.617556 TTGCATGCCAGCCACCCA 62.618 61.111 16.68 0.00 0.00 4.51
175 176 3.766691 CTTGCATGCCAGCCACCC 61.767 66.667 16.68 0.00 0.00 4.61
176 177 4.446413 GCTTGCATGCCAGCCACC 62.446 66.667 28.67 5.53 0.00 4.61
184 185 1.153509 GGTGATTGGGCTTGCATGC 60.154 57.895 15.87 15.87 0.00 4.06
185 186 1.518774 GGGTGATTGGGCTTGCATG 59.481 57.895 0.00 0.00 0.00 4.06
186 187 2.053865 CGGGTGATTGGGCTTGCAT 61.054 57.895 0.00 0.00 0.00 3.96
187 188 2.676121 CGGGTGATTGGGCTTGCA 60.676 61.111 0.00 0.00 0.00 4.08
188 189 2.676471 ACGGGTGATTGGGCTTGC 60.676 61.111 0.00 0.00 0.00 4.01
189 190 1.603455 ACACGGGTGATTGGGCTTG 60.603 57.895 5.71 0.00 0.00 4.01
190 191 2.843545 ACACGGGTGATTGGGCTT 59.156 55.556 5.71 0.00 0.00 4.35
200 201 0.036388 CCTAGTCAATGCACACGGGT 60.036 55.000 0.00 0.00 0.00 5.28
201 202 0.744414 CCCTAGTCAATGCACACGGG 60.744 60.000 0.00 0.00 0.00 5.28
202 203 0.036388 ACCCTAGTCAATGCACACGG 60.036 55.000 0.00 0.00 0.00 4.94
203 204 1.359848 GACCCTAGTCAATGCACACG 58.640 55.000 0.00 0.00 42.99 4.49
204 205 1.359848 CGACCCTAGTCAATGCACAC 58.640 55.000 0.00 0.00 43.73 3.82
205 206 0.249120 CCGACCCTAGTCAATGCACA 59.751 55.000 0.00 0.00 43.73 4.57
206 207 0.249398 ACCGACCCTAGTCAATGCAC 59.751 55.000 0.00 0.00 43.73 4.57
207 208 0.249120 CACCGACCCTAGTCAATGCA 59.751 55.000 0.00 0.00 43.73 3.96
208 209 0.462047 CCACCGACCCTAGTCAATGC 60.462 60.000 0.00 0.00 43.73 3.56
209 210 0.178068 CCCACCGACCCTAGTCAATG 59.822 60.000 0.00 0.00 43.73 2.82
210 211 0.042131 TCCCACCGACCCTAGTCAAT 59.958 55.000 0.00 0.00 43.73 2.57
211 212 0.613853 CTCCCACCGACCCTAGTCAA 60.614 60.000 0.00 0.00 43.73 3.18
212 213 1.000019 CTCCCACCGACCCTAGTCA 60.000 63.158 0.00 0.00 43.73 3.41
213 214 1.757340 CCTCCCACCGACCCTAGTC 60.757 68.421 0.00 0.00 39.83 2.59
214 215 1.217057 TACCTCCCACCGACCCTAGT 61.217 60.000 0.00 0.00 0.00 2.57
215 216 0.467659 CTACCTCCCACCGACCCTAG 60.468 65.000 0.00 0.00 0.00 3.02
216 217 1.217057 ACTACCTCCCACCGACCCTA 61.217 60.000 0.00 0.00 0.00 3.53
217 218 2.103079 AACTACCTCCCACCGACCCT 62.103 60.000 0.00 0.00 0.00 4.34
218 219 1.611556 AACTACCTCCCACCGACCC 60.612 63.158 0.00 0.00 0.00 4.46
219 220 1.595357 CAACTACCTCCCACCGACC 59.405 63.158 0.00 0.00 0.00 4.79
220 221 1.079336 GCAACTACCTCCCACCGAC 60.079 63.158 0.00 0.00 0.00 4.79
221 222 1.534476 TGCAACTACCTCCCACCGA 60.534 57.895 0.00 0.00 0.00 4.69
222 223 1.375523 GTGCAACTACCTCCCACCG 60.376 63.158 0.00 0.00 0.00 4.94
223 224 1.375523 CGTGCAACTACCTCCCACC 60.376 63.158 0.00 0.00 31.75 4.61
224 225 1.375523 CCGTGCAACTACCTCCCAC 60.376 63.158 0.00 0.00 31.75 4.61
225 226 3.065306 CCGTGCAACTACCTCCCA 58.935 61.111 0.00 0.00 31.75 4.37
226 227 2.436115 GCCGTGCAACTACCTCCC 60.436 66.667 0.00 0.00 31.75 4.30
227 228 2.436115 GGCCGTGCAACTACCTCC 60.436 66.667 0.00 0.00 31.75 4.30
228 229 2.813908 CGGCCGTGCAACTACCTC 60.814 66.667 19.50 0.00 31.75 3.85
229 230 4.388499 CCGGCCGTGCAACTACCT 62.388 66.667 26.12 0.00 31.75 3.08
249 250 4.838486 GTCTGTCTCGGGCTCGCG 62.838 72.222 0.00 0.00 36.13 5.87
250 251 4.838486 CGTCTGTCTCGGGCTCGC 62.838 72.222 0.00 0.00 36.13 5.03
251 252 4.838486 GCGTCTGTCTCGGGCTCG 62.838 72.222 0.00 0.00 37.82 5.03
252 253 4.500116 GGCGTCTGTCTCGGGCTC 62.500 72.222 0.00 0.00 0.00 4.70
255 256 4.180946 CTCGGCGTCTGTCTCGGG 62.181 72.222 6.85 0.00 0.00 5.14
256 257 3.125573 TCTCGGCGTCTGTCTCGG 61.126 66.667 6.85 0.00 0.00 4.63
257 258 2.098680 GTCTCGGCGTCTGTCTCG 59.901 66.667 6.85 0.00 0.00 4.04
258 259 1.154188 GTGTCTCGGCGTCTGTCTC 60.154 63.158 6.85 0.00 0.00 3.36
259 260 2.627737 GGTGTCTCGGCGTCTGTCT 61.628 63.158 6.85 0.00 0.00 3.41
260 261 2.126424 GGTGTCTCGGCGTCTGTC 60.126 66.667 6.85 0.00 0.00 3.51
261 262 4.039357 CGGTGTCTCGGCGTCTGT 62.039 66.667 6.85 0.00 0.00 3.41
278 279 3.711541 AATAGACGGACGGGCACGC 62.712 63.158 9.12 0.00 46.04 5.34
280 281 0.804933 GACAATAGACGGACGGGCAC 60.805 60.000 0.00 0.00 0.00 5.01
281 282 1.514087 GACAATAGACGGACGGGCA 59.486 57.895 0.00 0.00 0.00 5.36
282 283 1.227176 GGACAATAGACGGACGGGC 60.227 63.158 0.00 0.00 0.00 6.13
283 284 1.065273 CGGACAATAGACGGACGGG 59.935 63.158 0.00 0.00 0.00 5.28
284 285 1.588139 GCGGACAATAGACGGACGG 60.588 63.158 0.00 0.00 0.00 4.79
285 286 1.937846 CGCGGACAATAGACGGACG 60.938 63.158 0.00 0.00 0.00 4.79
286 287 2.228914 GCGCGGACAATAGACGGAC 61.229 63.158 8.83 0.00 0.00 4.79
287 288 2.103538 GCGCGGACAATAGACGGA 59.896 61.111 8.83 0.00 0.00 4.69
288 289 2.202690 TGCGCGGACAATAGACGG 60.203 61.111 8.83 0.00 0.00 4.79
289 290 2.230940 CCTGCGCGGACAATAGACG 61.231 63.158 20.25 0.00 33.16 4.18
290 291 2.526120 GCCTGCGCGGACAATAGAC 61.526 63.158 20.25 0.00 33.16 2.59
291 292 2.202878 GCCTGCGCGGACAATAGA 60.203 61.111 20.25 0.00 33.16 1.98
308 309 2.851008 GCCTAATTAAGCGAGCTTTGCG 60.851 50.000 15.90 0.00 37.47 4.85
309 310 2.720933 GCCTAATTAAGCGAGCTTTGC 58.279 47.619 15.90 3.85 37.47 3.68
318 319 4.261197 CCCATTCTTGACGCCTAATTAAGC 60.261 45.833 0.00 0.00 0.00 3.09
319 320 4.881850 ACCCATTCTTGACGCCTAATTAAG 59.118 41.667 0.00 0.00 0.00 1.85
320 321 4.850680 ACCCATTCTTGACGCCTAATTAA 58.149 39.130 0.00 0.00 0.00 1.40
321 322 4.497291 ACCCATTCTTGACGCCTAATTA 57.503 40.909 0.00 0.00 0.00 1.40
322 323 3.366052 ACCCATTCTTGACGCCTAATT 57.634 42.857 0.00 0.00 0.00 1.40
323 324 3.016736 CAACCCATTCTTGACGCCTAAT 58.983 45.455 0.00 0.00 0.00 1.73
324 325 2.432444 CAACCCATTCTTGACGCCTAA 58.568 47.619 0.00 0.00 0.00 2.69
325 326 1.339631 CCAACCCATTCTTGACGCCTA 60.340 52.381 0.00 0.00 0.00 3.93
326 327 0.609131 CCAACCCATTCTTGACGCCT 60.609 55.000 0.00 0.00 0.00 5.52
327 328 1.595093 CCCAACCCATTCTTGACGCC 61.595 60.000 0.00 0.00 0.00 5.68
328 329 1.883021 CCCAACCCATTCTTGACGC 59.117 57.895 0.00 0.00 0.00 5.19
329 330 1.595093 GGCCCAACCCATTCTTGACG 61.595 60.000 0.00 0.00 0.00 4.35
330 331 1.595093 CGGCCCAACCCATTCTTGAC 61.595 60.000 0.00 0.00 33.26 3.18
331 332 1.304052 CGGCCCAACCCATTCTTGA 60.304 57.895 0.00 0.00 33.26 3.02
332 333 0.897863 TTCGGCCCAACCCATTCTTG 60.898 55.000 0.00 0.00 33.26 3.02
333 334 0.898326 GTTCGGCCCAACCCATTCTT 60.898 55.000 1.07 0.00 33.26 2.52
334 335 1.304134 GTTCGGCCCAACCCATTCT 60.304 57.895 1.07 0.00 33.26 2.40
335 336 2.696759 CGTTCGGCCCAACCCATTC 61.697 63.158 7.72 0.00 33.26 2.67
336 337 2.675075 CGTTCGGCCCAACCCATT 60.675 61.111 7.72 0.00 33.26 3.16
337 338 2.700407 TTTCGTTCGGCCCAACCCAT 62.700 55.000 7.72 0.00 33.26 4.00
338 339 2.905935 TTTTCGTTCGGCCCAACCCA 62.906 55.000 7.72 0.00 33.26 4.51
339 340 1.736365 TTTTTCGTTCGGCCCAACCC 61.736 55.000 7.72 0.00 33.26 4.11
340 341 0.595567 GTTTTTCGTTCGGCCCAACC 60.596 55.000 7.72 0.00 0.00 3.77
341 342 0.100861 TGTTTTTCGTTCGGCCCAAC 59.899 50.000 2.67 2.67 0.00 3.77
342 343 0.815734 TTGTTTTTCGTTCGGCCCAA 59.184 45.000 0.00 0.00 0.00 4.12
343 344 0.815734 TTTGTTTTTCGTTCGGCCCA 59.184 45.000 0.00 0.00 0.00 5.36
344 345 1.202203 GTTTGTTTTTCGTTCGGCCC 58.798 50.000 0.00 0.00 0.00 5.80
345 346 0.841356 CGTTTGTTTTTCGTTCGGCC 59.159 50.000 0.00 0.00 0.00 6.13
346 347 1.771291 CTCGTTTGTTTTTCGTTCGGC 59.229 47.619 0.00 0.00 0.00 5.54
347 348 3.307339 TCTCGTTTGTTTTTCGTTCGG 57.693 42.857 0.00 0.00 0.00 4.30
348 349 5.843255 AAATCTCGTTTGTTTTTCGTTCG 57.157 34.783 0.00 0.00 0.00 3.95
349 350 7.641020 TCCTTAAATCTCGTTTGTTTTTCGTTC 59.359 33.333 0.00 0.00 0.00 3.95
350 351 7.474190 TCCTTAAATCTCGTTTGTTTTTCGTT 58.526 30.769 0.00 0.00 0.00 3.85
351 352 7.018635 TCCTTAAATCTCGTTTGTTTTTCGT 57.981 32.000 0.00 0.00 0.00 3.85
352 353 7.060633 CCATCCTTAAATCTCGTTTGTTTTTCG 59.939 37.037 0.00 0.00 0.00 3.46
353 354 7.328493 CCCATCCTTAAATCTCGTTTGTTTTTC 59.672 37.037 0.00 0.00 0.00 2.29
354 355 7.151976 CCCATCCTTAAATCTCGTTTGTTTTT 58.848 34.615 0.00 0.00 0.00 1.94
355 356 6.266786 ACCCATCCTTAAATCTCGTTTGTTTT 59.733 34.615 0.00 0.00 0.00 2.43
356 357 5.773176 ACCCATCCTTAAATCTCGTTTGTTT 59.227 36.000 0.00 0.00 0.00 2.83
357 358 5.321927 ACCCATCCTTAAATCTCGTTTGTT 58.678 37.500 0.00 0.00 0.00 2.83
358 359 4.918588 ACCCATCCTTAAATCTCGTTTGT 58.081 39.130 0.00 0.00 0.00 2.83
359 360 5.897377 AACCCATCCTTAAATCTCGTTTG 57.103 39.130 0.00 0.00 0.00 2.93
360 361 5.583457 CGTAACCCATCCTTAAATCTCGTTT 59.417 40.000 0.00 0.00 0.00 3.60
361 362 5.114081 CGTAACCCATCCTTAAATCTCGTT 58.886 41.667 0.00 0.00 0.00 3.85
362 363 4.690122 CGTAACCCATCCTTAAATCTCGT 58.310 43.478 0.00 0.00 0.00 4.18
363 364 3.493503 GCGTAACCCATCCTTAAATCTCG 59.506 47.826 0.00 0.00 0.00 4.04
364 365 4.448210 TGCGTAACCCATCCTTAAATCTC 58.552 43.478 0.00 0.00 0.00 2.75
365 366 4.497291 TGCGTAACCCATCCTTAAATCT 57.503 40.909 0.00 0.00 0.00 2.40
366 367 5.507315 CCAATGCGTAACCCATCCTTAAATC 60.507 44.000 0.00 0.00 0.00 2.17
367 368 4.340950 CCAATGCGTAACCCATCCTTAAAT 59.659 41.667 0.00 0.00 0.00 1.40
368 369 3.697045 CCAATGCGTAACCCATCCTTAAA 59.303 43.478 0.00 0.00 0.00 1.52
369 370 3.283751 CCAATGCGTAACCCATCCTTAA 58.716 45.455 0.00 0.00 0.00 1.85
370 371 2.422235 CCCAATGCGTAACCCATCCTTA 60.422 50.000 0.00 0.00 0.00 2.69
371 372 1.684869 CCCAATGCGTAACCCATCCTT 60.685 52.381 0.00 0.00 0.00 3.36
372 373 0.106719 CCCAATGCGTAACCCATCCT 60.107 55.000 0.00 0.00 0.00 3.24
373 374 0.395173 ACCCAATGCGTAACCCATCC 60.395 55.000 0.00 0.00 0.00 3.51
374 375 1.021968 GACCCAATGCGTAACCCATC 58.978 55.000 0.00 0.00 0.00 3.51
375 376 0.746563 CGACCCAATGCGTAACCCAT 60.747 55.000 0.00 0.00 0.00 4.00
376 377 1.376166 CGACCCAATGCGTAACCCA 60.376 57.895 0.00 0.00 0.00 4.51
377 378 2.110352 CCGACCCAATGCGTAACCC 61.110 63.158 0.00 0.00 0.00 4.11
378 379 2.757056 GCCGACCCAATGCGTAACC 61.757 63.158 0.00 0.00 0.00 2.85
379 380 1.702491 GAGCCGACCCAATGCGTAAC 61.702 60.000 0.00 0.00 0.00 2.50
380 381 1.448893 GAGCCGACCCAATGCGTAA 60.449 57.895 0.00 0.00 0.00 3.18
381 382 2.185867 GAGCCGACCCAATGCGTA 59.814 61.111 0.00 0.00 0.00 4.42
384 385 3.195698 GACGAGCCGACCCAATGC 61.196 66.667 1.50 0.00 0.00 3.56
385 386 1.811266 CAGACGAGCCGACCCAATG 60.811 63.158 1.50 0.00 0.00 2.82
386 387 2.227089 GACAGACGAGCCGACCCAAT 62.227 60.000 1.50 0.00 0.00 3.16
387 388 2.915659 ACAGACGAGCCGACCCAA 60.916 61.111 1.50 0.00 0.00 4.12
388 389 3.371063 GACAGACGAGCCGACCCA 61.371 66.667 1.50 0.00 0.00 4.51
389 390 4.131088 GGACAGACGAGCCGACCC 62.131 72.222 1.50 0.00 0.00 4.46
394 395 2.504244 CGAACGGACAGACGAGCC 60.504 66.667 0.00 0.00 37.61 4.70
395 396 2.081212 CACGAACGGACAGACGAGC 61.081 63.158 0.00 0.00 37.61 5.03
396 397 2.081212 GCACGAACGGACAGACGAG 61.081 63.158 0.00 0.00 37.61 4.18
397 398 2.050714 GCACGAACGGACAGACGA 60.051 61.111 0.00 0.00 37.61 4.20
398 399 3.103911 GGCACGAACGGACAGACG 61.104 66.667 0.00 0.00 40.31 4.18
399 400 2.737376 GGGCACGAACGGACAGAC 60.737 66.667 0.00 0.00 0.00 3.51
400 401 3.998672 GGGGCACGAACGGACAGA 61.999 66.667 0.00 0.00 0.00 3.41
401 402 3.818121 TTGGGGCACGAACGGACAG 62.818 63.158 0.00 0.00 0.00 3.51
402 403 3.862991 TTGGGGCACGAACGGACA 61.863 61.111 0.00 0.00 0.00 4.02
403 404 3.351416 GTTGGGGCACGAACGGAC 61.351 66.667 0.00 0.00 0.00 4.79
404 405 3.524648 GAGTTGGGGCACGAACGGA 62.525 63.158 8.28 0.00 39.88 4.69
405 406 3.047877 GAGTTGGGGCACGAACGG 61.048 66.667 8.28 0.00 39.88 4.44
406 407 3.047877 GGAGTTGGGGCACGAACG 61.048 66.667 8.28 0.00 39.88 3.95
407 408 3.047877 CGGAGTTGGGGCACGAAC 61.048 66.667 5.59 5.59 35.78 3.95
408 409 3.235481 TCGGAGTTGGGGCACGAA 61.235 61.111 0.00 0.00 0.00 3.85
409 410 3.998672 GTCGGAGTTGGGGCACGA 61.999 66.667 0.00 0.00 0.00 4.35
427 428 3.305177 TAAGGCCAACTCCGGACGC 62.305 63.158 5.01 0.00 40.05 5.19
428 429 1.153628 CTAAGGCCAACTCCGGACG 60.154 63.158 5.01 0.00 40.05 4.79
429 430 0.831307 ATCTAAGGCCAACTCCGGAC 59.169 55.000 5.01 0.00 0.00 4.79
430 431 1.120530 GATCTAAGGCCAACTCCGGA 58.879 55.000 5.01 2.93 0.00 5.14
431 432 0.106894 GGATCTAAGGCCAACTCCGG 59.893 60.000 5.01 0.00 0.00 5.14
432 433 0.249489 CGGATCTAAGGCCAACTCCG 60.249 60.000 5.01 11.58 39.58 4.63
433 434 0.831307 ACGGATCTAAGGCCAACTCC 59.169 55.000 5.01 2.45 0.00 3.85
434 435 1.480954 TGACGGATCTAAGGCCAACTC 59.519 52.381 5.01 0.00 0.00 3.01
435 436 1.568504 TGACGGATCTAAGGCCAACT 58.431 50.000 5.01 0.00 0.00 3.16
436 437 2.484889 GATGACGGATCTAAGGCCAAC 58.515 52.381 5.01 0.00 0.00 3.77
437 438 1.068588 CGATGACGGATCTAAGGCCAA 59.931 52.381 5.01 0.00 35.72 4.52
438 439 0.673985 CGATGACGGATCTAAGGCCA 59.326 55.000 5.01 0.00 35.72 5.36
439 440 3.498676 CGATGACGGATCTAAGGCC 57.501 57.895 0.00 0.00 35.72 5.19
451 452 0.445436 CTGCTGCAAGAACCGATGAC 59.555 55.000 3.02 0.00 34.07 3.06
473 474 3.023116 CCCCTCTTGCCCCATCCA 61.023 66.667 0.00 0.00 0.00 3.41
520 521 3.229156 TTCCGCGGTGTGGATTCGT 62.229 57.895 27.15 0.00 42.13 3.85
671 681 7.939588 GGTTATATAAATCTTGGAGAGCCTTGT 59.060 37.037 0.00 0.00 34.31 3.16
717 727 3.144657 TGATCTGCATGTGGAGTTTGT 57.855 42.857 1.43 0.00 34.87 2.83
733 743 7.607223 TGGGTGGATTTTGATTTGATTTTGATC 59.393 33.333 0.00 0.00 0.00 2.92
754 764 2.282816 TGGGTTTGCGGATGGGTG 60.283 61.111 0.00 0.00 0.00 4.61
802 812 5.335127 TCTCTTGCGTCCGTATACTTTTAC 58.665 41.667 0.56 0.00 0.00 2.01
809 1276 1.406539 GGGTTCTCTTGCGTCCGTATA 59.593 52.381 0.00 0.00 0.00 1.47
1456 1942 2.345991 GTCCAGTAGCGGTGGCAA 59.654 61.111 0.00 0.00 43.41 4.52
1618 2529 2.454941 GAGGTGGGGGAGGAGGAA 59.545 66.667 0.00 0.00 0.00 3.36
1820 2739 6.700520 AGCCTTCACGTACAAGCTATTAATAC 59.299 38.462 0.95 0.00 0.00 1.89
1821 2740 6.812998 AGCCTTCACGTACAAGCTATTAATA 58.187 36.000 0.95 0.00 0.00 0.98
1822 2741 5.671493 AGCCTTCACGTACAAGCTATTAAT 58.329 37.500 0.95 0.00 0.00 1.40
1823 2742 5.080969 AGCCTTCACGTACAAGCTATTAA 57.919 39.130 0.95 0.00 0.00 1.40
1824 2743 4.158949 TGAGCCTTCACGTACAAGCTATTA 59.841 41.667 2.72 0.00 0.00 0.98
1825 2744 3.056107 TGAGCCTTCACGTACAAGCTATT 60.056 43.478 2.72 0.00 0.00 1.73
1826 2745 2.496070 TGAGCCTTCACGTACAAGCTAT 59.504 45.455 2.72 0.00 0.00 2.97
1827 2746 1.890489 TGAGCCTTCACGTACAAGCTA 59.110 47.619 2.72 0.00 0.00 3.32
1828 2747 0.679505 TGAGCCTTCACGTACAAGCT 59.320 50.000 2.37 2.37 0.00 3.74
1851 2770 2.554032 CTCCTTTTTCCATGTCTTGCGT 59.446 45.455 0.00 0.00 0.00 5.24
1853 2772 3.157087 TCCTCCTTTTTCCATGTCTTGC 58.843 45.455 0.00 0.00 0.00 4.01
1958 2893 7.393234 AGTGCAAACAAAATGCTAGGAATACTA 59.607 33.333 0.00 0.00 44.14 1.82
1972 2907 6.928492 AGAAGAAGAAACAAGTGCAAACAAAA 59.072 30.769 0.00 0.00 0.00 2.44
2014 2952 0.515127 CATTACACAGGCGACGCAAA 59.485 50.000 23.09 5.86 0.00 3.68
2063 3008 1.923204 CTCGCAACTTGCTGCTACTAG 59.077 52.381 11.93 0.00 42.25 2.57
2111 3069 1.067060 AGCTTACGCATGCTCGTCATA 59.933 47.619 17.13 0.00 43.15 2.15
2256 3220 1.746171 GCCCCCGTAAGAAAGATGGAC 60.746 57.143 0.00 0.00 43.02 4.02
2257 3221 0.544697 GCCCCCGTAAGAAAGATGGA 59.455 55.000 0.00 0.00 43.02 3.41
2258 3222 0.546598 AGCCCCCGTAAGAAAGATGG 59.453 55.000 0.00 0.00 43.02 3.51
2259 3223 1.668419 CAGCCCCCGTAAGAAAGATG 58.332 55.000 0.00 0.00 43.02 2.90
2280 3245 3.008375 TCCAATCACTTTCACCTCCTCTG 59.992 47.826 0.00 0.00 0.00 3.35
2281 3246 3.251484 TCCAATCACTTTCACCTCCTCT 58.749 45.455 0.00 0.00 0.00 3.69
2352 3463 5.680229 CGACGATAATGTAAGAGTACACACC 59.320 44.000 0.00 0.00 42.99 4.16
2354 3465 5.268544 GCGACGATAATGTAAGAGTACACA 58.731 41.667 0.00 0.00 42.99 3.72
2355 3466 4.375117 CGCGACGATAATGTAAGAGTACAC 59.625 45.833 0.00 0.00 42.99 2.90
2428 3539 1.338674 TGTACGGCTTCCATCCAGTTG 60.339 52.381 0.00 0.00 0.00 3.16
2481 3600 8.677148 ATATTAAACTGGCACAAGTACTATGG 57.323 34.615 0.00 0.00 38.70 2.74
2493 3615 9.417561 AGTACTAGTAGTGATATTAAACTGGCA 57.582 33.333 13.29 0.00 0.00 4.92
2535 3663 1.212616 CTGCTGCTGCTACGGTAATC 58.787 55.000 17.00 0.00 40.48 1.75
2544 3672 0.394192 TCACAAGTACTGCTGCTGCT 59.606 50.000 17.00 0.00 40.48 4.24
2545 3673 1.196354 CTTCACAAGTACTGCTGCTGC 59.804 52.381 8.89 8.89 40.20 5.25
2546 3674 1.196354 GCTTCACAAGTACTGCTGCTG 59.804 52.381 0.00 4.89 0.00 4.41
2547 3675 1.071385 AGCTTCACAAGTACTGCTGCT 59.929 47.619 0.00 0.00 0.00 4.24
2548 3676 1.517242 AGCTTCACAAGTACTGCTGC 58.483 50.000 0.00 0.00 0.00 5.25
2549 3677 2.874701 ACAAGCTTCACAAGTACTGCTG 59.125 45.455 0.00 0.00 0.00 4.41
2618 3762 1.754226 GCAACCACTTTTGTCCTCCAA 59.246 47.619 0.00 0.00 0.00 3.53
2619 3763 1.064017 AGCAACCACTTTTGTCCTCCA 60.064 47.619 0.00 0.00 0.00 3.86
2724 3868 1.068083 CCCATCTCCATCCACGACG 59.932 63.158 0.00 0.00 0.00 5.12
2726 3870 1.688884 TGCCCATCTCCATCCACGA 60.689 57.895 0.00 0.00 0.00 4.35
2771 3930 1.065199 TCCCAGTGCATTGATGAGGAC 60.065 52.381 11.31 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.