Multiple sequence alignment - TraesCS3D01G294900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G294900 chr3D 100.000 5252 0 0 1 5252 406405790 406400539 0.000000e+00 9699.0
1 TraesCS3D01G294900 chr3D 85.507 138 18 2 3 140 404541632 404541767 5.480000e-30 143.0
2 TraesCS3D01G294900 chr3D 94.667 75 4 0 3159 3233 290191304 290191230 3.320000e-22 117.0
3 TraesCS3D01G294900 chr3A 95.002 4362 152 29 767 5102 545151833 545156154 0.000000e+00 6787.0
4 TraesCS3D01G294900 chr3A 98.276 58 0 1 5177 5234 545156641 545156585 3.350000e-17 100.0
5 TraesCS3D01G294900 chr3A 92.308 39 3 0 548 586 216189148 216189186 7.350000e-04 56.5
6 TraesCS3D01G294900 chr3B 87.448 2382 204 50 1777 4100 532345451 532343107 0.000000e+00 2654.0
7 TraesCS3D01G294900 chr3B 94.970 1014 34 6 769 1778 532346490 532345490 0.000000e+00 1574.0
8 TraesCS3D01G294900 chr3B 87.931 580 34 9 4024 4603 532343106 532342563 0.000000e+00 651.0
9 TraesCS3D01G294900 chr3B 90.083 363 29 7 4890 5252 532342073 532341718 1.030000e-126 464.0
10 TraesCS3D01G294900 chr5A 81.450 469 72 7 3 459 444083946 444084411 2.310000e-98 370.0
11 TraesCS3D01G294900 chr5A 77.486 533 98 19 9 532 331892730 331892211 3.070000e-77 300.0
12 TraesCS3D01G294900 chr5D 80.909 440 78 6 54 490 474221790 474222226 5.040000e-90 342.0
13 TraesCS3D01G294900 chr5D 92.683 41 3 0 548 588 887878 887918 5.680000e-05 60.2
14 TraesCS3D01G294900 chr1A 79.668 482 89 9 22 499 514535908 514536384 6.510000e-89 339.0
15 TraesCS3D01G294900 chr2D 84.058 345 52 3 35 378 606953729 606953387 3.920000e-86 329.0
16 TraesCS3D01G294900 chr7A 81.390 403 60 10 58 455 672853640 672853248 1.100000e-81 315.0
17 TraesCS3D01G294900 chr7A 75.000 288 59 11 91 372 15091632 15091912 2.570000e-23 121.0
18 TraesCS3D01G294900 chr2B 78.586 481 94 9 60 539 741899402 741899874 5.110000e-80 309.0
19 TraesCS3D01G294900 chr2B 78.799 283 50 7 92 372 157713802 157714076 1.160000e-41 182.0
20 TraesCS3D01G294900 chr1D 79.295 454 83 10 22 471 417364702 417365148 1.840000e-79 307.0
21 TraesCS3D01G294900 chr5B 81.844 358 63 2 21 377 282014812 282014456 3.070000e-77 300.0
22 TraesCS3D01G294900 chr2A 95.000 40 2 0 427 466 229254421 229254382 4.390000e-06 63.9
23 TraesCS3D01G294900 chr2A 95.000 40 2 0 427 466 560832819 560832780 4.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G294900 chr3D 406400539 406405790 5251 True 9699.00 9699 100.000 1 5252 1 chr3D.!!$R2 5251
1 TraesCS3D01G294900 chr3A 545151833 545156154 4321 False 6787.00 6787 95.002 767 5102 1 chr3A.!!$F2 4335
2 TraesCS3D01G294900 chr3B 532341718 532346490 4772 True 1335.75 2654 90.108 769 5252 4 chr3B.!!$R1 4483
3 TraesCS3D01G294900 chr5A 331892211 331892730 519 True 300.00 300 77.486 9 532 1 chr5A.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 401 0.034059 AGATTCAATAGAGGCGGCCG 59.966 55.0 24.05 24.05 0.00 6.13 F
827 829 0.098728 CACGGATTCGACCAATTGCC 59.901 55.0 0.00 0.00 40.11 4.52 F
1233 1242 0.742990 CCTACGCCCTGCATTCGAAA 60.743 55.0 0.00 0.00 0.00 3.46 F
2303 2363 0.041312 CACACGGTGTAACTTGCAGC 60.041 55.0 14.30 0.00 36.74 5.25 F
3247 3336 0.233848 GGTGACGCGGTACAAAACAG 59.766 55.0 12.47 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1651 0.111639 TGTTAACCCCTGGAAGTGGC 59.888 55.000 2.48 0.0 0.00 5.01 R
2286 2346 1.204062 CGCTGCAAGTTACACCGTG 59.796 57.895 0.00 0.0 35.30 4.94 R
2964 3053 1.918800 AGCAACTACCTTCGCCCCT 60.919 57.895 0.00 0.0 0.00 4.79 R
4186 4370 1.687612 CTGGGAGGTCCAATGCACT 59.312 57.895 0.00 0.0 46.51 4.40 R
5143 5575 0.760567 TGATCCGAGATGAGGTGGGG 60.761 60.000 0.00 0.0 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.919771 GTGCTATACCAGGGGCCAA 59.080 57.895 4.39 0.00 0.00 4.52
28 29 4.351054 AGGGGCCAACTTGGAGCG 62.351 66.667 12.37 0.00 40.96 5.03
37 38 4.404654 CTTGGAGCGGCGGTTTGC 62.405 66.667 14.71 0.00 45.38 3.68
47 48 2.358737 CGGTTTGCTCCTCCGCTT 60.359 61.111 0.00 0.00 37.90 4.68
50 51 2.672996 TTTGCTCCTCCGCTTGCC 60.673 61.111 0.00 0.00 0.00 4.52
51 52 3.196207 TTTGCTCCTCCGCTTGCCT 62.196 57.895 0.00 0.00 0.00 4.75
52 53 3.612247 TTGCTCCTCCGCTTGCCTC 62.612 63.158 0.00 0.00 0.00 4.70
71 72 2.439701 CCTGCAGCCTCACCCATG 60.440 66.667 8.66 0.00 0.00 3.66
83 84 2.828549 CCCATGGTGCTAACGGCC 60.829 66.667 11.73 0.00 40.92 6.13
85 86 2.114670 CCATGGTGCTAACGGCCTG 61.115 63.158 2.57 0.00 40.92 4.85
87 88 3.344137 ATGGTGCTAACGGCCTGGG 62.344 63.158 0.00 0.00 40.92 4.45
109 110 2.496817 CGAGGGAGGTGTAGCAGC 59.503 66.667 0.00 0.00 0.00 5.25
115 116 0.737715 GGAGGTGTAGCAGCGAGTTG 60.738 60.000 0.00 0.00 36.92 3.16
116 117 1.355066 GAGGTGTAGCAGCGAGTTGC 61.355 60.000 3.69 3.69 44.41 4.17
141 142 3.537874 GTATCAGGCGGGCTCGGT 61.538 66.667 8.71 0.00 36.79 4.69
142 143 3.536917 TATCAGGCGGGCTCGGTG 61.537 66.667 8.71 0.00 36.79 4.94
165 166 2.679930 GCTACCCAGTCGGCTTTTATGT 60.680 50.000 0.00 0.00 33.26 2.29
166 167 2.109425 ACCCAGTCGGCTTTTATGTC 57.891 50.000 0.00 0.00 33.26 3.06
168 169 1.674817 CCCAGTCGGCTTTTATGTCGT 60.675 52.381 0.00 0.00 36.35 4.34
174 175 4.082354 AGTCGGCTTTTATGTCGTAGAACT 60.082 41.667 0.00 0.00 39.69 3.01
181 182 6.590677 GCTTTTATGTCGTAGAACTCCTCTTT 59.409 38.462 0.00 0.00 39.69 2.52
185 186 4.395625 TGTCGTAGAACTCCTCTTTCTGA 58.604 43.478 0.00 0.00 39.69 3.27
203 204 3.541950 ATCGCCGGATGCCATGGAG 62.542 63.158 18.40 0.01 36.24 3.86
206 207 2.429058 CCGGATGCCATGGAGAGG 59.571 66.667 18.40 6.85 0.00 3.69
210 211 1.527844 GATGCCATGGAGAGGGTGC 60.528 63.158 18.40 0.00 0.00 5.01
219 220 1.770658 TGGAGAGGGTGCAGAATATGG 59.229 52.381 0.00 0.00 0.00 2.74
231 232 3.474600 CAGAATATGGTGCAAGGAGGAG 58.525 50.000 0.00 0.00 0.00 3.69
232 233 3.118112 CAGAATATGGTGCAAGGAGGAGT 60.118 47.826 0.00 0.00 0.00 3.85
233 234 4.101585 CAGAATATGGTGCAAGGAGGAGTA 59.898 45.833 0.00 0.00 0.00 2.59
279 280 4.129737 CCCGACGTCTGGCATCGT 62.130 66.667 13.38 15.50 43.00 3.73
289 290 3.308595 CGTCTGGCATCGTTTAAATAGCA 59.691 43.478 0.00 0.00 0.00 3.49
291 292 3.312421 TCTGGCATCGTTTAAATAGCAGC 59.688 43.478 0.00 0.00 0.00 5.25
292 293 2.031560 TGGCATCGTTTAAATAGCAGCG 59.968 45.455 0.00 0.00 0.00 5.18
293 294 2.286833 GGCATCGTTTAAATAGCAGCGA 59.713 45.455 0.00 0.00 0.00 4.93
294 295 3.242608 GGCATCGTTTAAATAGCAGCGAA 60.243 43.478 1.21 0.00 32.15 4.70
295 296 3.719352 GCATCGTTTAAATAGCAGCGAAC 59.281 43.478 1.21 0.00 32.15 3.95
296 297 4.494199 GCATCGTTTAAATAGCAGCGAACT 60.494 41.667 1.21 0.00 32.15 3.01
309 311 1.446272 CGAACTCGAGGAGCCAACC 60.446 63.158 18.41 0.00 43.02 3.77
311 313 2.837371 GAACTCGAGGAGCCAACCGG 62.837 65.000 18.41 0.00 32.04 5.28
326 328 0.039888 ACCGGCGTTGTGTTTAATGC 60.040 50.000 6.01 0.00 40.87 3.56
330 332 1.341369 GCGTTGTGTTTAATGCCGGC 61.341 55.000 22.73 22.73 36.75 6.13
355 357 2.897846 CAAACGGACGTGTGGCCA 60.898 61.111 0.00 0.00 30.04 5.36
362 364 1.248785 GGACGTGTGGCCAGAGTAGA 61.249 60.000 5.11 0.00 0.00 2.59
365 367 1.623811 ACGTGTGGCCAGAGTAGATTT 59.376 47.619 5.11 0.00 0.00 2.17
372 374 1.866063 GCCAGAGTAGATTTCTCGGCG 60.866 57.143 0.00 0.00 39.54 6.46
376 378 0.530744 AGTAGATTTCTCGGCGCACA 59.469 50.000 10.83 0.00 0.00 4.57
378 380 0.245266 TAGATTTCTCGGCGCACACA 59.755 50.000 10.83 0.00 0.00 3.72
380 382 1.565156 GATTTCTCGGCGCACACACA 61.565 55.000 10.83 0.00 0.00 3.72
381 383 1.568612 ATTTCTCGGCGCACACACAG 61.569 55.000 10.83 0.00 0.00 3.66
382 384 2.636778 TTTCTCGGCGCACACACAGA 62.637 55.000 10.83 0.00 0.00 3.41
385 387 1.959899 CTCGGCGCACACACAGATTC 61.960 60.000 10.83 0.00 0.00 2.52
389 391 1.737236 GGCGCACACACAGATTCAATA 59.263 47.619 10.83 0.00 0.00 1.90
390 392 2.223112 GGCGCACACACAGATTCAATAG 60.223 50.000 10.83 0.00 0.00 1.73
392 394 3.242220 GCGCACACACAGATTCAATAGAG 60.242 47.826 0.30 0.00 0.00 2.43
395 397 3.308053 CACACACAGATTCAATAGAGGCG 59.692 47.826 0.00 0.00 0.00 5.52
397 399 1.869767 CACAGATTCAATAGAGGCGGC 59.130 52.381 0.00 0.00 0.00 6.53
399 401 0.034059 AGATTCAATAGAGGCGGCCG 59.966 55.000 24.05 24.05 0.00 6.13
400 402 0.951040 GATTCAATAGAGGCGGCCGG 60.951 60.000 29.38 8.95 0.00 6.13
401 403 2.397413 ATTCAATAGAGGCGGCCGGG 62.397 60.000 29.38 0.00 0.00 5.73
412 414 3.373565 GGCCGGGGCTGTTTGAAG 61.374 66.667 14.22 0.00 41.60 3.02
413 415 4.056125 GCCGGGGCTGTTTGAAGC 62.056 66.667 2.18 0.00 42.75 3.86
419 421 4.633980 GCTGTTTGAAGCCGGTTG 57.366 55.556 1.90 0.00 37.20 3.77
420 422 2.029743 GCTGTTTGAAGCCGGTTGA 58.970 52.632 1.90 0.00 37.20 3.18
423 425 2.664916 CTGTTTGAAGCCGGTTGAATG 58.335 47.619 1.90 0.00 0.00 2.67
424 426 2.028130 TGTTTGAAGCCGGTTGAATGT 58.972 42.857 1.90 0.00 0.00 2.71
425 427 2.034053 TGTTTGAAGCCGGTTGAATGTC 59.966 45.455 1.90 0.00 0.00 3.06
430 432 2.461110 GCCGGTTGAATGTCGCGAT 61.461 57.895 14.06 0.00 0.00 4.58
444 446 3.084579 CGATGAGGCGTGTTCAGC 58.915 61.111 0.00 0.00 0.00 4.26
475 477 4.539881 GGCGACGCTCTCTCGACC 62.540 72.222 20.77 0.00 32.64 4.79
477 479 3.186730 CGACGCTCTCTCGACCGA 61.187 66.667 0.00 0.00 32.65 4.69
480 482 3.488978 CGCTCTCTCGACCGACGT 61.489 66.667 0.00 0.00 43.13 4.34
484 486 3.733960 CTCTCGACCGACGTGCCA 61.734 66.667 0.00 0.00 43.13 4.92
490 492 2.022129 GACCGACGTGCCACTTCAG 61.022 63.158 0.00 0.00 0.00 3.02
495 497 2.591429 CGTGCCACTTCAGTGCCA 60.591 61.111 1.01 0.00 44.34 4.92
499 501 2.281070 CCACTTCAGTGCCAGCGT 60.281 61.111 1.01 0.00 44.34 5.07
509 511 2.203082 TGCCAGCGTCAGTGAGAGT 61.203 57.895 0.00 0.00 0.00 3.24
512 514 0.600557 CCAGCGTCAGTGAGAGTTCT 59.399 55.000 0.00 0.00 0.00 3.01
519 521 0.875728 CAGTGAGAGTTCTCGTCCGT 59.124 55.000 4.80 0.00 45.72 4.69
523 525 2.740981 GTGAGAGTTCTCGTCCGTTCTA 59.259 50.000 4.80 0.00 45.72 2.10
526 528 0.810016 AGTTCTCGTCCGTTCTAGGC 59.190 55.000 0.00 0.00 0.00 3.93
535 537 4.807039 GTTCTAGGCCGGCGCGAA 62.807 66.667 22.54 18.94 35.02 4.70
536 538 3.845259 TTCTAGGCCGGCGCGAAT 61.845 61.111 22.54 6.15 35.02 3.34
537 539 4.585526 TCTAGGCCGGCGCGAATG 62.586 66.667 22.54 7.25 35.02 2.67
549 551 3.017323 CGAATGCCGCTCCATGAC 58.983 61.111 0.00 0.00 0.00 3.06
550 552 2.874694 CGAATGCCGCTCCATGACG 61.875 63.158 0.00 0.00 0.00 4.35
602 604 3.050275 GCAAAGCGAGCGAGGGTT 61.050 61.111 0.00 0.00 0.00 4.11
603 605 2.617274 GCAAAGCGAGCGAGGGTTT 61.617 57.895 0.00 0.00 35.66 3.27
604 606 1.949257 CAAAGCGAGCGAGGGTTTT 59.051 52.632 0.00 0.00 33.22 2.43
605 607 0.310854 CAAAGCGAGCGAGGGTTTTT 59.689 50.000 0.00 0.00 33.22 1.94
627 629 6.401047 TTTATGGACCAGGATAGTTAGACG 57.599 41.667 0.00 0.00 0.00 4.18
628 630 3.377253 TGGACCAGGATAGTTAGACGT 57.623 47.619 0.00 0.00 0.00 4.34
629 631 3.021695 TGGACCAGGATAGTTAGACGTG 58.978 50.000 0.00 0.00 0.00 4.49
630 632 2.361438 GGACCAGGATAGTTAGACGTGG 59.639 54.545 0.00 0.00 42.73 4.94
631 633 2.361438 GACCAGGATAGTTAGACGTGGG 59.639 54.545 0.00 0.00 41.80 4.61
632 634 1.068741 CCAGGATAGTTAGACGTGGGC 59.931 57.143 0.00 0.00 36.38 5.36
633 635 1.030457 AGGATAGTTAGACGTGGGCG 58.970 55.000 0.00 0.00 44.93 6.13
663 665 2.430367 GGACACCCGCAAAGTCCT 59.570 61.111 0.00 0.00 46.45 3.85
664 666 1.671379 GGACACCCGCAAAGTCCTC 60.671 63.158 0.00 0.00 46.45 3.71
665 667 1.371558 GACACCCGCAAAGTCCTCT 59.628 57.895 0.00 0.00 0.00 3.69
666 668 0.606604 GACACCCGCAAAGTCCTCTA 59.393 55.000 0.00 0.00 0.00 2.43
667 669 1.001633 GACACCCGCAAAGTCCTCTAA 59.998 52.381 0.00 0.00 0.00 2.10
668 670 1.628846 ACACCCGCAAAGTCCTCTAAT 59.371 47.619 0.00 0.00 0.00 1.73
669 671 2.039879 ACACCCGCAAAGTCCTCTAATT 59.960 45.455 0.00 0.00 0.00 1.40
670 672 3.081804 CACCCGCAAAGTCCTCTAATTT 58.918 45.455 0.00 0.00 0.00 1.82
671 673 4.258543 CACCCGCAAAGTCCTCTAATTTA 58.741 43.478 0.00 0.00 0.00 1.40
672 674 4.881850 CACCCGCAAAGTCCTCTAATTTAT 59.118 41.667 0.00 0.00 0.00 1.40
673 675 5.007724 CACCCGCAAAGTCCTCTAATTTATC 59.992 44.000 0.00 0.00 0.00 1.75
674 676 5.104485 ACCCGCAAAGTCCTCTAATTTATCT 60.104 40.000 0.00 0.00 0.00 1.98
675 677 5.467063 CCCGCAAAGTCCTCTAATTTATCTC 59.533 44.000 0.00 0.00 0.00 2.75
676 678 5.467063 CCGCAAAGTCCTCTAATTTATCTCC 59.533 44.000 0.00 0.00 0.00 3.71
677 679 5.175856 CGCAAAGTCCTCTAATTTATCTCCG 59.824 44.000 0.00 0.00 0.00 4.63
678 680 5.467063 GCAAAGTCCTCTAATTTATCTCCGG 59.533 44.000 0.00 0.00 0.00 5.14
679 681 6.583562 CAAAGTCCTCTAATTTATCTCCGGT 58.416 40.000 0.00 0.00 0.00 5.28
680 682 6.809976 AAGTCCTCTAATTTATCTCCGGTT 57.190 37.500 0.00 0.00 0.00 4.44
681 683 6.809976 AGTCCTCTAATTTATCTCCGGTTT 57.190 37.500 0.00 0.00 0.00 3.27
682 684 7.909485 AGTCCTCTAATTTATCTCCGGTTTA 57.091 36.000 0.00 0.00 0.00 2.01
683 685 7.724287 AGTCCTCTAATTTATCTCCGGTTTAC 58.276 38.462 0.00 0.00 0.00 2.01
684 686 7.343833 AGTCCTCTAATTTATCTCCGGTTTACA 59.656 37.037 0.00 0.00 0.00 2.41
685 687 7.652507 GTCCTCTAATTTATCTCCGGTTTACAG 59.347 40.741 0.00 0.00 0.00 2.74
686 688 6.929606 CCTCTAATTTATCTCCGGTTTACAGG 59.070 42.308 0.00 0.00 0.00 4.00
687 689 7.201974 CCTCTAATTTATCTCCGGTTTACAGGA 60.202 40.741 0.00 1.85 37.89 3.86
688 690 8.081517 TCTAATTTATCTCCGGTTTACAGGAA 57.918 34.615 0.00 0.00 39.66 3.36
689 691 8.542080 TCTAATTTATCTCCGGTTTACAGGAAA 58.458 33.333 0.00 0.00 39.66 3.13
690 692 9.169592 CTAATTTATCTCCGGTTTACAGGAAAA 57.830 33.333 0.00 2.45 39.66 2.29
691 693 8.589701 AATTTATCTCCGGTTTACAGGAAAAT 57.410 30.769 0.00 4.40 39.66 1.82
692 694 9.689501 AATTTATCTCCGGTTTACAGGAAAATA 57.310 29.630 0.00 5.66 39.66 1.40
693 695 9.862149 ATTTATCTCCGGTTTACAGGAAAATAT 57.138 29.630 0.00 0.00 39.66 1.28
694 696 8.671384 TTATCTCCGGTTTACAGGAAAATATG 57.329 34.615 0.00 0.00 39.66 1.78
695 697 4.879545 TCTCCGGTTTACAGGAAAATATGC 59.120 41.667 0.00 0.00 39.66 3.14
696 698 3.623960 TCCGGTTTACAGGAAAATATGCG 59.376 43.478 0.00 0.00 37.28 4.73
697 699 3.375922 CCGGTTTACAGGAAAATATGCGT 59.624 43.478 0.00 0.00 32.68 5.24
698 700 4.495184 CCGGTTTACAGGAAAATATGCGTC 60.495 45.833 0.00 0.00 32.68 5.19
699 701 4.495184 CGGTTTACAGGAAAATATGCGTCC 60.495 45.833 0.00 0.00 0.00 4.79
700 702 4.396790 GGTTTACAGGAAAATATGCGTCCA 59.603 41.667 3.21 0.00 33.57 4.02
701 703 5.448632 GGTTTACAGGAAAATATGCGTCCAG 60.449 44.000 3.21 0.00 33.57 3.86
702 704 3.627395 ACAGGAAAATATGCGTCCAGA 57.373 42.857 3.21 0.00 33.57 3.86
703 705 4.156455 ACAGGAAAATATGCGTCCAGAT 57.844 40.909 3.21 0.00 33.57 2.90
704 706 5.290493 ACAGGAAAATATGCGTCCAGATA 57.710 39.130 3.21 0.00 33.57 1.98
705 707 5.057149 ACAGGAAAATATGCGTCCAGATAC 58.943 41.667 3.21 0.00 33.57 2.24
706 708 4.452455 CAGGAAAATATGCGTCCAGATACC 59.548 45.833 3.21 0.00 33.57 2.73
707 709 3.432252 GGAAAATATGCGTCCAGATACCG 59.568 47.826 0.00 0.00 0.00 4.02
708 710 2.743636 AATATGCGTCCAGATACCGG 57.256 50.000 0.00 0.00 0.00 5.28
709 711 1.629043 ATATGCGTCCAGATACCGGT 58.371 50.000 13.98 13.98 0.00 5.28
710 712 2.275134 TATGCGTCCAGATACCGGTA 57.725 50.000 18.46 18.46 0.00 4.02
711 713 1.405872 ATGCGTCCAGATACCGGTAA 58.594 50.000 20.22 0.00 0.00 2.85
712 714 1.184431 TGCGTCCAGATACCGGTAAA 58.816 50.000 20.22 0.00 0.00 2.01
713 715 1.135527 TGCGTCCAGATACCGGTAAAG 59.864 52.381 20.22 11.13 0.00 1.85
714 716 1.849097 CGTCCAGATACCGGTAAAGC 58.151 55.000 20.22 11.20 0.00 3.51
715 717 1.537562 CGTCCAGATACCGGTAAAGCC 60.538 57.143 20.22 8.37 0.00 4.35
716 718 1.761198 GTCCAGATACCGGTAAAGCCT 59.239 52.381 20.22 10.56 34.25 4.58
717 719 2.037144 TCCAGATACCGGTAAAGCCTC 58.963 52.381 20.22 11.29 34.25 4.70
718 720 1.070289 CCAGATACCGGTAAAGCCTCC 59.930 57.143 20.22 2.35 34.25 4.30
719 721 2.040178 CAGATACCGGTAAAGCCTCCT 58.960 52.381 20.22 0.00 34.25 3.69
720 722 2.040178 AGATACCGGTAAAGCCTCCTG 58.960 52.381 20.22 0.00 34.25 3.86
721 723 1.070289 GATACCGGTAAAGCCTCCTGG 59.930 57.143 20.22 0.00 34.25 4.45
722 724 0.252375 TACCGGTAAAGCCTCCTGGT 60.252 55.000 13.14 0.00 35.81 4.00
723 725 1.131928 ACCGGTAAAGCCTCCTGGTT 61.132 55.000 4.49 0.00 35.85 3.67
724 726 0.906775 CCGGTAAAGCCTCCTGGTTA 59.093 55.000 0.00 0.00 33.41 2.85
725 727 1.489230 CCGGTAAAGCCTCCTGGTTAT 59.511 52.381 0.00 0.00 33.41 1.89
726 728 2.092592 CCGGTAAAGCCTCCTGGTTATT 60.093 50.000 0.00 0.00 33.41 1.40
727 729 3.617284 CGGTAAAGCCTCCTGGTTATTT 58.383 45.455 0.00 0.00 33.41 1.40
728 730 3.377172 CGGTAAAGCCTCCTGGTTATTTG 59.623 47.826 0.00 0.00 33.41 2.32
729 731 4.341487 GGTAAAGCCTCCTGGTTATTTGT 58.659 43.478 0.00 0.00 33.41 2.83
730 732 4.157840 GGTAAAGCCTCCTGGTTATTTGTG 59.842 45.833 0.00 0.00 33.41 3.33
731 733 3.525800 AAGCCTCCTGGTTATTTGTGT 57.474 42.857 0.00 0.00 35.27 3.72
732 734 3.525800 AGCCTCCTGGTTATTTGTGTT 57.474 42.857 0.00 0.00 35.27 3.32
733 735 3.421844 AGCCTCCTGGTTATTTGTGTTC 58.578 45.455 0.00 0.00 35.27 3.18
734 736 3.153919 GCCTCCTGGTTATTTGTGTTCA 58.846 45.455 0.00 0.00 35.27 3.18
735 737 3.191371 GCCTCCTGGTTATTTGTGTTCAG 59.809 47.826 0.00 0.00 35.27 3.02
736 738 4.398319 CCTCCTGGTTATTTGTGTTCAGT 58.602 43.478 0.00 0.00 0.00 3.41
737 739 4.827284 CCTCCTGGTTATTTGTGTTCAGTT 59.173 41.667 0.00 0.00 0.00 3.16
738 740 5.301805 CCTCCTGGTTATTTGTGTTCAGTTT 59.698 40.000 0.00 0.00 0.00 2.66
739 741 6.142818 TCCTGGTTATTTGTGTTCAGTTTG 57.857 37.500 0.00 0.00 0.00 2.93
740 742 4.744631 CCTGGTTATTTGTGTTCAGTTTGC 59.255 41.667 0.00 0.00 0.00 3.68
741 743 4.355437 TGGTTATTTGTGTTCAGTTTGCG 58.645 39.130 0.00 0.00 0.00 4.85
742 744 3.733727 GGTTATTTGTGTTCAGTTTGCGG 59.266 43.478 0.00 0.00 0.00 5.69
743 745 4.356289 GTTATTTGTGTTCAGTTTGCGGT 58.644 39.130 0.00 0.00 0.00 5.68
744 746 5.505985 GGTTATTTGTGTTCAGTTTGCGGTA 60.506 40.000 0.00 0.00 0.00 4.02
745 747 4.640789 ATTTGTGTTCAGTTTGCGGTAA 57.359 36.364 0.00 0.00 0.00 2.85
746 748 4.436242 TTTGTGTTCAGTTTGCGGTAAA 57.564 36.364 0.00 0.00 0.00 2.01
747 749 4.436242 TTGTGTTCAGTTTGCGGTAAAA 57.564 36.364 0.00 0.00 0.00 1.52
748 750 4.436242 TGTGTTCAGTTTGCGGTAAAAA 57.564 36.364 0.00 0.00 0.00 1.94
749 751 4.416620 TGTGTTCAGTTTGCGGTAAAAAG 58.583 39.130 0.00 0.00 0.00 2.27
750 752 3.242016 GTGTTCAGTTTGCGGTAAAAAGC 59.758 43.478 0.00 0.00 0.00 3.51
751 753 2.392933 TCAGTTTGCGGTAAAAAGCG 57.607 45.000 0.00 0.00 35.87 4.68
752 754 0.775861 CAGTTTGCGGTAAAAAGCGC 59.224 50.000 14.36 14.36 35.87 5.92
753 755 0.659123 AGTTTGCGGTAAAAAGCGCG 60.659 50.000 15.88 0.00 35.87 6.86
754 756 0.931202 GTTTGCGGTAAAAAGCGCGT 60.931 50.000 15.88 0.00 35.87 6.01
755 757 0.657951 TTTGCGGTAAAAAGCGCGTC 60.658 50.000 15.88 0.00 35.87 5.19
756 758 2.202260 GCGGTAAAAAGCGCGTCC 60.202 61.111 8.43 0.00 0.00 4.79
757 759 2.095096 CGGTAAAAAGCGCGTCCG 59.905 61.111 8.43 3.97 37.57 4.79
781 783 4.676586 CGGCAAAACACGTCCGGC 62.677 66.667 0.00 0.00 38.35 6.13
827 829 0.098728 CACGGATTCGACCAATTGCC 59.901 55.000 0.00 0.00 40.11 4.52
893 895 1.152819 CACCTATCCCCTCGTCGGA 60.153 63.158 0.00 0.00 33.16 4.55
1137 1144 2.101770 CCGCCTAGTTCGGTCGAC 59.898 66.667 7.13 7.13 41.85 4.20
1233 1242 0.742990 CCTACGCCCTGCATTCGAAA 60.743 55.000 0.00 0.00 0.00 3.46
1234 1243 1.083489 CTACGCCCTGCATTCGAAAA 58.917 50.000 0.00 0.00 0.00 2.29
1297 1310 7.452880 AGCAGAGTAAAAGTGCAATATGAAA 57.547 32.000 0.00 0.00 39.80 2.69
1388 1401 1.337917 GGGACGTCCTGAAAGAGTTCC 60.338 57.143 32.52 8.86 34.07 3.62
1567 1580 4.002906 TGGTTCGTTTTACTCAGCTGAT 57.997 40.909 18.63 10.18 0.00 2.90
1570 1583 4.631813 GGTTCGTTTTACTCAGCTGATCAT 59.368 41.667 18.63 8.66 0.00 2.45
1781 1834 6.778821 TGAACCTTTCTTCAATCTACATGGA 58.221 36.000 0.00 0.00 0.00 3.41
1787 1840 9.177608 CCTTTCTTCAATCTACATGGAATAACA 57.822 33.333 0.00 0.00 0.00 2.41
1829 1883 1.959085 AAGTGCCACTTGGAATGCG 59.041 52.632 9.77 0.00 37.00 4.73
1830 1884 1.526575 AAGTGCCACTTGGAATGCGG 61.527 55.000 9.77 0.00 37.00 5.69
1894 1951 9.275231 CGTCGATATAGTACCAAGTCATTAATC 57.725 37.037 0.00 0.00 0.00 1.75
1973 2031 3.244078 TGCTCACAGTTTGGGTGTACTAG 60.244 47.826 0.00 0.00 37.52 2.57
2018 2076 3.106827 TCATCTGTGCCCTAGACATTCA 58.893 45.455 0.00 0.00 0.00 2.57
2219 2278 6.639279 ACATGTGCGTACTTCAAAATTTTACC 59.361 34.615 2.44 0.00 0.00 2.85
2267 2327 4.968626 CGATTAGCATGTACAAACTGCAA 58.031 39.130 19.26 12.53 38.37 4.08
2286 2346 5.110598 TGCAATATTTCCATGCAACATCAC 58.889 37.500 0.00 0.00 46.23 3.06
2303 2363 0.041312 CACACGGTGTAACTTGCAGC 60.041 55.000 14.30 0.00 36.74 5.25
2741 2809 7.203910 TGCGCTAAGAAAACCAAATTTAGAAA 58.796 30.769 9.73 0.00 0.00 2.52
3233 3322 5.016051 TCTCAAATGCTCAGATAGGTGAC 57.984 43.478 0.00 0.00 0.00 3.67
3239 3328 1.306148 CTCAGATAGGTGACGCGGTA 58.694 55.000 12.47 0.00 0.00 4.02
3247 3336 0.233848 GGTGACGCGGTACAAAACAG 59.766 55.000 12.47 0.00 0.00 3.16
3253 3342 2.035066 ACGCGGTACAAAACAGTACTCT 59.965 45.455 12.47 0.00 43.01 3.24
3448 3537 8.434589 AATATCAGGAATTTTCTTTGGTTGGA 57.565 30.769 0.00 0.00 0.00 3.53
3464 3553 3.315470 GGTTGGACCAAGTCAGAAACTTC 59.685 47.826 7.31 0.00 45.28 3.01
3519 3608 3.513912 GGGATCTTTCACCGGGAAAATTT 59.486 43.478 6.32 0.86 44.52 1.82
3546 3635 9.406828 GAAAGAGTGATGGTTGGTATTTTAAAC 57.593 33.333 0.00 0.00 0.00 2.01
3591 3682 7.759489 TTCTGCACCTTTAAGATGTGTTAAT 57.241 32.000 0.00 0.00 0.00 1.40
3806 3898 2.158475 ACAAGGCCAAAACAGAGGATCA 60.158 45.455 5.01 0.00 37.82 2.92
3913 4014 6.989759 TGAAGTTGACACTTTGTATTCAGCTA 59.010 34.615 0.00 0.00 43.79 3.32
3985 4090 2.502510 CGCCATGCAACGCAGAAC 60.503 61.111 8.85 0.00 43.65 3.01
4010 4117 4.368315 CGCTAGACACAACCAAGCATATA 58.632 43.478 0.00 0.00 32.69 0.86
4011 4118 4.991056 CGCTAGACACAACCAAGCATATAT 59.009 41.667 0.00 0.00 32.69 0.86
4015 4122 8.446273 GCTAGACACAACCAAGCATATATAATG 58.554 37.037 0.00 0.00 33.38 1.90
4109 4293 8.355169 GCAGGAAAATATATCTCAAGCAATGAA 58.645 33.333 0.00 0.00 37.67 2.57
4119 4303 7.876936 ATCTCAAGCAATGAACATAACTGAT 57.123 32.000 0.00 0.00 37.67 2.90
4186 4370 6.053632 TCTCTGAATATGCAAAGACAAGGA 57.946 37.500 0.00 0.00 0.00 3.36
4252 4436 1.301677 CGGCCTTCTTCTTGCCTGAC 61.302 60.000 0.00 0.00 43.12 3.51
4258 4442 1.004560 CTTCTTGCCTGACGCCTGA 60.005 57.895 0.00 0.00 36.24 3.86
4360 4547 1.552792 GGAGAGTTGTAAGAGCTGCCT 59.447 52.381 0.00 0.00 0.00 4.75
4375 4562 0.251474 TGCCTGGAATGAAGCTTGCT 60.251 50.000 2.10 0.00 0.00 3.91
4376 4563 0.893447 GCCTGGAATGAAGCTTGCTT 59.107 50.000 2.10 7.65 0.00 3.91
4377 4564 1.135170 GCCTGGAATGAAGCTTGCTTC 60.135 52.381 23.73 23.73 0.00 3.86
4378 4565 1.131883 CCTGGAATGAAGCTTGCTTCG 59.868 52.381 24.43 12.61 36.21 3.79
4492 4679 1.987704 TTGTGTGTGCCTTGTCGTGC 61.988 55.000 0.00 0.00 0.00 5.34
4532 4726 4.810345 ACAATGAAGTGGGGGTAGAAAAA 58.190 39.130 0.00 0.00 0.00 1.94
4556 4750 9.841295 AAAGATTATTTACGGGCTGATAGTTTA 57.159 29.630 0.00 0.00 0.00 2.01
4572 4766 9.630098 CTGATAGTTTAAAGCATTTGTCATGTT 57.370 29.630 0.00 0.00 39.63 2.71
4591 4785 3.646162 TGTTTACTCTTGGAAGGAGCTCA 59.354 43.478 17.19 0.00 34.46 4.26
4603 4961 0.108945 GGAGCTCATTTTGTGCCTGC 60.109 55.000 17.19 0.00 37.57 4.85
4606 4964 2.424601 GAGCTCATTTTGTGCCTGCATA 59.575 45.455 9.40 0.00 37.57 3.14
4681 5039 3.889815 GATGTTCCATGTCCATCCTGAA 58.110 45.455 0.00 0.00 30.98 3.02
4682 5040 3.354948 TGTTCCATGTCCATCCTGAAG 57.645 47.619 0.00 0.00 0.00 3.02
4683 5041 2.912295 TGTTCCATGTCCATCCTGAAGA 59.088 45.455 0.00 0.00 0.00 2.87
4684 5042 3.274288 GTTCCATGTCCATCCTGAAGAC 58.726 50.000 0.00 0.00 0.00 3.01
4685 5043 1.839994 TCCATGTCCATCCTGAAGACC 59.160 52.381 0.00 0.00 0.00 3.85
4686 5044 1.842562 CCATGTCCATCCTGAAGACCT 59.157 52.381 0.00 0.00 0.00 3.85
4687 5045 2.421107 CCATGTCCATCCTGAAGACCTG 60.421 54.545 0.00 0.00 0.00 4.00
4688 5046 2.325661 TGTCCATCCTGAAGACCTGA 57.674 50.000 0.00 0.00 0.00 3.86
4689 5047 2.619931 TGTCCATCCTGAAGACCTGAA 58.380 47.619 0.00 0.00 0.00 3.02
4696 5054 2.568956 TCCTGAAGACCTGAACATCCAG 59.431 50.000 0.00 0.00 0.00 3.86
4737 5123 8.865090 TGTTCACAAATATAAAGATGTTTGGGT 58.135 29.630 8.61 0.00 44.04 4.51
4773 5192 4.030977 GCTACATACGGACACACTAAAACG 59.969 45.833 0.00 0.00 0.00 3.60
4845 5269 7.161404 TGTGGAAGGATGCAGTAATGTATATC 58.839 38.462 0.00 0.00 0.00 1.63
4846 5270 7.161404 GTGGAAGGATGCAGTAATGTATATCA 58.839 38.462 0.00 0.00 0.00 2.15
4847 5271 7.661437 GTGGAAGGATGCAGTAATGTATATCAA 59.339 37.037 0.00 0.00 0.00 2.57
4848 5272 8.217111 TGGAAGGATGCAGTAATGTATATCAAA 58.783 33.333 0.00 0.00 0.00 2.69
4849 5273 9.066892 GGAAGGATGCAGTAATGTATATCAAAA 57.933 33.333 0.00 0.00 0.00 2.44
4871 5295 5.772825 AAAAGTATGCTCTGCTTGTTTCA 57.227 34.783 0.00 0.00 29.37 2.69
4872 5296 5.772825 AAAGTATGCTCTGCTTGTTTCAA 57.227 34.783 0.00 0.00 29.37 2.69
4985 5417 8.964150 ACAAAAGTTATTCTTTGTATGAAACGC 58.036 29.630 0.00 0.00 44.50 4.84
5072 5504 2.118228 AAACAGCACGACGTAACGTA 57.882 45.000 0.00 0.00 44.76 3.57
5078 5510 3.362831 CAGCACGACGTAACGTATTTTCT 59.637 43.478 0.00 0.00 44.76 2.52
5109 5541 9.898152 AATAAAGCTAGCTATAATGATCTTCCC 57.102 33.333 19.70 0.00 0.00 3.97
5111 5543 6.790232 AGCTAGCTATAATGATCTTCCCTC 57.210 41.667 17.69 0.00 0.00 4.30
5116 5548 9.434420 CTAGCTATAATGATCTTCCCTCAAAAG 57.566 37.037 0.00 0.00 0.00 2.27
5119 5551 9.294614 GCTATAATGATCTTCCCTCAAAAGAAT 57.705 33.333 0.00 0.00 36.41 2.40
5158 5590 2.435693 GGTCCCCACCTCATCTCGG 61.436 68.421 0.00 0.00 40.00 4.63
5159 5591 1.381327 GTCCCCACCTCATCTCGGA 60.381 63.158 0.00 0.00 0.00 4.55
5213 5645 3.737850 CCTCCAGACTTATCATGCCTTC 58.262 50.000 0.00 0.00 0.00 3.46
5222 5654 0.179034 ATCATGCCTTCTTCCGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
5234 5666 0.036306 TCCGCTCCCTTTTTCCTCAC 59.964 55.000 0.00 0.00 0.00 3.51
5244 5676 4.351192 CCTTTTTCCTCACAAGTTTGACG 58.649 43.478 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.465642 GTTGGCCCCTGGTATAGCAC 60.466 60.000 0.00 0.00 0.00 4.40
2 3 0.623324 AGTTGGCCCCTGGTATAGCA 60.623 55.000 0.00 4.27 0.00 3.49
3 4 0.551396 AAGTTGGCCCCTGGTATAGC 59.449 55.000 0.00 0.00 0.00 2.97
4 5 1.133792 CCAAGTTGGCCCCTGGTATAG 60.134 57.143 9.46 0.00 0.00 1.31
5 6 0.923358 CCAAGTTGGCCCCTGGTATA 59.077 55.000 9.46 0.00 0.00 1.47
6 7 0.849094 TCCAAGTTGGCCCCTGGTAT 60.849 55.000 17.68 0.00 37.47 2.73
7 8 1.464395 TCCAAGTTGGCCCCTGGTA 60.464 57.895 17.68 0.00 37.47 3.25
19 20 2.978010 CAAACCGCCGCTCCAAGT 60.978 61.111 0.00 0.00 0.00 3.16
31 32 2.982744 GCAAGCGGAGGAGCAAACC 61.983 63.158 0.00 0.00 40.15 3.27
32 33 2.563427 GCAAGCGGAGGAGCAAAC 59.437 61.111 0.00 0.00 40.15 2.93
33 34 2.672996 GGCAAGCGGAGGAGCAAA 60.673 61.111 0.00 0.00 40.15 3.68
53 54 4.437587 ATGGGTGAGGCTGCAGGC 62.438 66.667 31.58 31.58 41.43 4.85
55 56 2.439701 CCATGGGTGAGGCTGCAG 60.440 66.667 10.11 10.11 0.00 4.41
56 57 3.259314 ACCATGGGTGAGGCTGCA 61.259 61.111 18.09 0.00 32.98 4.41
65 66 2.045340 GCCGTTAGCACCATGGGT 60.045 61.111 18.09 2.44 42.97 4.51
67 68 2.114670 CAGGCCGTTAGCACCATGG 61.115 63.158 11.19 11.19 46.50 3.66
69 70 2.272146 CCAGGCCGTTAGCACCAT 59.728 61.111 0.00 0.00 46.50 3.55
71 72 4.796495 CCCCAGGCCGTTAGCACC 62.796 72.222 0.00 0.00 46.50 5.01
100 101 3.169198 GGCAACTCGCTGCTACAC 58.831 61.111 0.00 0.00 42.25 2.90
116 117 1.581954 CCGCCTGATACGAGCTAGG 59.418 63.158 0.00 0.00 0.00 3.02
152 153 4.171754 AGTTCTACGACATAAAAGCCGAC 58.828 43.478 0.00 0.00 0.00 4.79
153 154 4.418392 GAGTTCTACGACATAAAAGCCGA 58.582 43.478 0.00 0.00 0.00 5.54
154 155 3.550678 GGAGTTCTACGACATAAAAGCCG 59.449 47.826 0.00 0.00 0.00 5.52
156 157 5.652518 AGAGGAGTTCTACGACATAAAAGC 58.347 41.667 0.00 0.00 33.23 3.51
165 166 4.333095 CGATCAGAAAGAGGAGTTCTACGA 59.667 45.833 0.00 0.00 34.14 3.43
166 167 4.593157 CGATCAGAAAGAGGAGTTCTACG 58.407 47.826 0.00 0.00 34.14 3.51
168 169 3.381908 GGCGATCAGAAAGAGGAGTTCTA 59.618 47.826 0.00 0.00 34.14 2.10
174 175 0.683179 TCCGGCGATCAGAAAGAGGA 60.683 55.000 9.30 0.00 0.00 3.71
181 182 2.510551 ATGGCATCCGGCGATCAGA 61.511 57.895 9.30 0.00 46.16 3.27
185 186 3.541950 CTCCATGGCATCCGGCGAT 62.542 63.158 9.30 0.00 46.16 4.58
203 204 1.312815 GCACCATATTCTGCACCCTC 58.687 55.000 0.00 0.00 33.31 4.30
206 207 1.406539 CCTTGCACCATATTCTGCACC 59.593 52.381 3.92 0.00 43.07 5.01
210 211 3.118112 ACTCCTCCTTGCACCATATTCTG 60.118 47.826 0.00 0.00 0.00 3.02
219 220 0.617820 TCCCCTACTCCTCCTTGCAC 60.618 60.000 0.00 0.00 0.00 4.57
231 232 2.363925 ACACCTCCGCTCCCCTAC 60.364 66.667 0.00 0.00 0.00 3.18
232 233 2.363795 CACACCTCCGCTCCCCTA 60.364 66.667 0.00 0.00 0.00 3.53
266 267 3.308866 GCTATTTAAACGATGCCAGACGT 59.691 43.478 0.00 0.00 44.57 4.34
269 270 3.312421 GCTGCTATTTAAACGATGCCAGA 59.688 43.478 0.00 0.00 0.00 3.86
275 276 4.026804 CGAGTTCGCTGCTATTTAAACGAT 60.027 41.667 0.00 0.00 0.00 3.73
278 279 4.259850 CCTCGAGTTCGCTGCTATTTAAAC 60.260 45.833 12.31 0.00 39.60 2.01
279 280 3.863424 CCTCGAGTTCGCTGCTATTTAAA 59.137 43.478 12.31 0.00 39.60 1.52
289 290 2.276116 TTGGCTCCTCGAGTTCGCT 61.276 57.895 12.31 0.00 39.60 4.93
291 292 1.446272 GGTTGGCTCCTCGAGTTCG 60.446 63.158 12.31 0.00 41.45 3.95
292 293 1.446272 CGGTTGGCTCCTCGAGTTC 60.446 63.158 12.31 0.00 31.39 3.01
293 294 2.657237 CGGTTGGCTCCTCGAGTT 59.343 61.111 12.31 0.00 31.39 3.01
294 295 3.382832 CCGGTTGGCTCCTCGAGT 61.383 66.667 12.31 0.00 31.39 4.18
309 311 2.719454 GGCATTAAACACAACGCCG 58.281 52.632 0.00 0.00 0.00 6.46
311 313 1.341369 GCCGGCATTAAACACAACGC 61.341 55.000 24.80 0.00 0.00 4.84
336 338 4.322385 GCCACACGTCCGTTTGCC 62.322 66.667 0.64 0.00 0.00 4.52
337 339 4.322385 GGCCACACGTCCGTTTGC 62.322 66.667 0.00 0.00 0.00 3.68
339 341 2.590575 CTGGCCACACGTCCGTTT 60.591 61.111 0.00 0.00 0.00 3.60
353 355 1.866063 GCGCCGAGAAATCTACTCTGG 60.866 57.143 0.00 0.00 34.14 3.86
355 357 1.103803 TGCGCCGAGAAATCTACTCT 58.896 50.000 4.18 0.00 32.87 3.24
362 364 1.568612 CTGTGTGTGCGCCGAGAAAT 61.569 55.000 4.18 0.00 0.00 2.17
365 367 2.434658 AATCTGTGTGTGCGCCGAGA 62.435 55.000 4.18 0.00 0.00 4.04
372 374 3.064545 GCCTCTATTGAATCTGTGTGTGC 59.935 47.826 0.00 0.00 0.00 4.57
376 378 2.743183 GCCGCCTCTATTGAATCTGTGT 60.743 50.000 0.00 0.00 0.00 3.72
378 380 1.202698 GGCCGCCTCTATTGAATCTGT 60.203 52.381 0.71 0.00 0.00 3.41
380 382 0.034059 CGGCCGCCTCTATTGAATCT 59.966 55.000 14.67 0.00 0.00 2.40
381 383 0.951040 CCGGCCGCCTCTATTGAATC 60.951 60.000 22.85 0.00 0.00 2.52
382 384 1.071471 CCGGCCGCCTCTATTGAAT 59.929 57.895 22.85 0.00 0.00 2.57
385 387 4.626081 CCCCGGCCGCCTCTATTG 62.626 72.222 22.85 2.64 0.00 1.90
395 397 3.373565 CTTCAAACAGCCCCGGCC 61.374 66.667 1.02 0.00 43.17 6.13
403 405 2.034558 ACATTCAACCGGCTTCAAACAG 59.965 45.455 0.00 0.00 0.00 3.16
404 406 2.028130 ACATTCAACCGGCTTCAAACA 58.972 42.857 0.00 0.00 0.00 2.83
406 408 1.265635 CGACATTCAACCGGCTTCAAA 59.734 47.619 0.00 0.00 0.00 2.69
407 409 0.871722 CGACATTCAACCGGCTTCAA 59.128 50.000 0.00 0.00 0.00 2.69
410 412 2.677003 CGCGACATTCAACCGGCTT 61.677 57.895 0.00 0.00 0.00 4.35
411 413 2.852495 ATCGCGACATTCAACCGGCT 62.852 55.000 12.93 0.00 0.00 5.52
412 414 2.461110 ATCGCGACATTCAACCGGC 61.461 57.895 12.93 0.00 0.00 6.13
413 415 1.081556 TCATCGCGACATTCAACCGG 61.082 55.000 12.93 0.00 0.00 5.28
414 416 0.298707 CTCATCGCGACATTCAACCG 59.701 55.000 12.93 0.00 0.00 4.44
415 417 0.652592 CCTCATCGCGACATTCAACC 59.347 55.000 12.93 0.00 0.00 3.77
416 418 0.026803 GCCTCATCGCGACATTCAAC 59.973 55.000 12.93 0.00 0.00 3.18
417 419 2.383170 GCCTCATCGCGACATTCAA 58.617 52.632 12.93 0.00 0.00 2.69
418 420 4.108902 GCCTCATCGCGACATTCA 57.891 55.556 12.93 0.00 0.00 2.57
430 432 4.680237 CCGGCTGAACACGCCTCA 62.680 66.667 0.00 0.00 45.37 3.86
453 455 4.421479 AGAGAGCGTCGCCCGTTG 62.421 66.667 14.86 0.00 39.32 4.10
457 459 4.539881 GTCGAGAGAGCGTCGCCC 62.540 72.222 14.86 0.71 43.49 6.13
471 473 3.103911 GAAGTGGCACGTCGGTCG 61.104 66.667 17.40 0.00 46.00 4.79
473 475 2.029073 CTGAAGTGGCACGTCGGT 59.971 61.111 27.51 7.27 30.02 4.69
475 477 2.943345 GCACTGAAGTGGCACGTCG 61.943 63.158 24.68 20.94 45.72 5.12
484 486 1.301244 CTGACGCTGGCACTGAAGT 60.301 57.895 0.00 0.00 0.00 3.01
490 492 1.735920 CTCTCACTGACGCTGGCAC 60.736 63.158 0.00 0.00 0.00 5.01
495 497 0.519519 CGAGAACTCTCACTGACGCT 59.480 55.000 7.47 0.00 43.00 5.07
499 501 1.157585 CGGACGAGAACTCTCACTGA 58.842 55.000 7.47 0.00 43.00 3.41
509 511 2.187073 GGCCTAGAACGGACGAGAA 58.813 57.895 0.00 0.00 0.00 2.87
519 521 3.845259 ATTCGCGCCGGCCTAGAA 61.845 61.111 23.46 22.83 35.02 2.10
532 534 2.874694 CGTCATGGAGCGGCATTCG 61.875 63.158 1.45 0.00 42.76 3.34
533 535 2.537560 CCGTCATGGAGCGGCATTC 61.538 63.158 1.45 0.00 41.53 2.67
534 536 2.514592 CCGTCATGGAGCGGCATT 60.515 61.111 1.45 0.00 41.53 3.56
552 554 3.506096 CAGCTGCCCGCACTCATG 61.506 66.667 0.00 0.00 42.61 3.07
553 555 4.790962 CCAGCTGCCCGCACTCAT 62.791 66.667 8.66 0.00 42.61 2.90
572 574 2.966309 CTTTGCGTTCCCGTCAGGC 61.966 63.158 0.00 0.00 36.15 4.85
573 575 2.966309 GCTTTGCGTTCCCGTCAGG 61.966 63.158 0.00 0.00 36.15 3.86
574 576 2.556287 GCTTTGCGTTCCCGTCAG 59.444 61.111 0.00 0.00 36.15 3.51
585 587 2.130073 AAAACCCTCGCTCGCTTTGC 62.130 55.000 0.00 0.00 0.00 3.68
586 588 0.310854 AAAAACCCTCGCTCGCTTTG 59.689 50.000 0.00 0.00 0.00 2.77
587 589 2.715536 AAAAACCCTCGCTCGCTTT 58.284 47.368 0.00 0.00 0.00 3.51
588 590 4.475527 AAAAACCCTCGCTCGCTT 57.524 50.000 0.00 0.00 0.00 4.68
602 604 7.093201 ACGTCTAACTATCCTGGTCCATAAAAA 60.093 37.037 0.00 0.00 0.00 1.94
603 605 6.381994 ACGTCTAACTATCCTGGTCCATAAAA 59.618 38.462 0.00 0.00 0.00 1.52
604 606 5.895534 ACGTCTAACTATCCTGGTCCATAAA 59.104 40.000 0.00 0.00 0.00 1.40
605 607 5.301045 CACGTCTAACTATCCTGGTCCATAA 59.699 44.000 0.00 0.00 0.00 1.90
606 608 4.825634 CACGTCTAACTATCCTGGTCCATA 59.174 45.833 0.00 0.00 0.00 2.74
607 609 3.637229 CACGTCTAACTATCCTGGTCCAT 59.363 47.826 0.00 0.00 0.00 3.41
608 610 3.021695 CACGTCTAACTATCCTGGTCCA 58.978 50.000 0.00 0.00 0.00 4.02
609 611 2.361438 CCACGTCTAACTATCCTGGTCC 59.639 54.545 0.00 0.00 0.00 4.46
610 612 2.361438 CCCACGTCTAACTATCCTGGTC 59.639 54.545 0.00 0.00 0.00 4.02
611 613 2.385803 CCCACGTCTAACTATCCTGGT 58.614 52.381 0.00 0.00 0.00 4.00
612 614 1.068741 GCCCACGTCTAACTATCCTGG 59.931 57.143 0.00 0.00 0.00 4.45
613 615 1.269102 CGCCCACGTCTAACTATCCTG 60.269 57.143 0.00 0.00 33.53 3.86
614 616 1.030457 CGCCCACGTCTAACTATCCT 58.970 55.000 0.00 0.00 33.53 3.24
615 617 3.564455 CGCCCACGTCTAACTATCC 57.436 57.895 0.00 0.00 33.53 2.59
647 649 0.606604 TAGAGGACTTTGCGGGTGTC 59.393 55.000 0.00 0.00 0.00 3.67
648 650 1.053424 TTAGAGGACTTTGCGGGTGT 58.947 50.000 0.00 0.00 0.00 4.16
649 651 2.403252 ATTAGAGGACTTTGCGGGTG 57.597 50.000 0.00 0.00 0.00 4.61
650 652 3.434940 AAATTAGAGGACTTTGCGGGT 57.565 42.857 0.00 0.00 0.00 5.28
651 653 5.368989 AGATAAATTAGAGGACTTTGCGGG 58.631 41.667 0.00 0.00 0.00 6.13
652 654 5.467063 GGAGATAAATTAGAGGACTTTGCGG 59.533 44.000 0.00 0.00 0.00 5.69
653 655 5.175856 CGGAGATAAATTAGAGGACTTTGCG 59.824 44.000 0.00 0.00 0.00 4.85
654 656 5.467063 CCGGAGATAAATTAGAGGACTTTGC 59.533 44.000 0.00 0.00 0.00 3.68
655 657 6.583562 ACCGGAGATAAATTAGAGGACTTTG 58.416 40.000 9.46 0.00 0.00 2.77
656 658 6.809976 ACCGGAGATAAATTAGAGGACTTT 57.190 37.500 9.46 0.00 0.00 2.66
657 659 6.809976 AACCGGAGATAAATTAGAGGACTT 57.190 37.500 9.46 0.00 0.00 3.01
658 660 6.809976 AAACCGGAGATAAATTAGAGGACT 57.190 37.500 9.46 0.00 0.00 3.85
659 661 7.495055 TGTAAACCGGAGATAAATTAGAGGAC 58.505 38.462 9.46 0.00 0.00 3.85
660 662 7.201974 CCTGTAAACCGGAGATAAATTAGAGGA 60.202 40.741 9.46 0.00 36.45 3.71
661 663 6.929606 CCTGTAAACCGGAGATAAATTAGAGG 59.070 42.308 9.46 8.78 30.57 3.69
662 664 7.723324 TCCTGTAAACCGGAGATAAATTAGAG 58.277 38.462 9.46 3.76 0.00 2.43
663 665 7.664552 TCCTGTAAACCGGAGATAAATTAGA 57.335 36.000 9.46 0.00 0.00 2.10
664 666 8.726870 TTTCCTGTAAACCGGAGATAAATTAG 57.273 34.615 9.46 0.00 0.00 1.73
665 667 9.689501 ATTTTCCTGTAAACCGGAGATAAATTA 57.310 29.630 9.46 0.00 0.00 1.40
666 668 8.589701 ATTTTCCTGTAAACCGGAGATAAATT 57.410 30.769 9.46 0.00 0.00 1.82
667 669 9.862149 ATATTTTCCTGTAAACCGGAGATAAAT 57.138 29.630 9.46 6.55 0.00 1.40
668 670 9.116067 CATATTTTCCTGTAAACCGGAGATAAA 57.884 33.333 9.46 0.00 0.00 1.40
669 671 7.227910 GCATATTTTCCTGTAAACCGGAGATAA 59.772 37.037 9.46 0.00 0.00 1.75
670 672 6.708949 GCATATTTTCCTGTAAACCGGAGATA 59.291 38.462 9.46 0.00 0.00 1.98
671 673 5.531287 GCATATTTTCCTGTAAACCGGAGAT 59.469 40.000 9.46 0.00 0.00 2.75
672 674 4.879545 GCATATTTTCCTGTAAACCGGAGA 59.120 41.667 9.46 0.00 0.00 3.71
673 675 4.260620 CGCATATTTTCCTGTAAACCGGAG 60.261 45.833 9.46 0.00 0.00 4.63
674 676 3.623960 CGCATATTTTCCTGTAAACCGGA 59.376 43.478 9.46 0.00 0.00 5.14
675 677 3.375922 ACGCATATTTTCCTGTAAACCGG 59.624 43.478 0.00 0.00 0.00 5.28
676 678 4.495184 GGACGCATATTTTCCTGTAAACCG 60.495 45.833 0.00 0.00 0.00 4.44
677 679 4.396790 TGGACGCATATTTTCCTGTAAACC 59.603 41.667 0.00 0.00 0.00 3.27
678 680 5.353123 TCTGGACGCATATTTTCCTGTAAAC 59.647 40.000 0.00 0.00 31.90 2.01
679 681 5.492895 TCTGGACGCATATTTTCCTGTAAA 58.507 37.500 0.00 0.00 31.90 2.01
680 682 5.092554 TCTGGACGCATATTTTCCTGTAA 57.907 39.130 0.00 0.00 31.90 2.41
681 683 4.746535 TCTGGACGCATATTTTCCTGTA 57.253 40.909 0.00 0.00 31.90 2.74
682 684 3.627395 TCTGGACGCATATTTTCCTGT 57.373 42.857 0.00 0.00 31.90 4.00
683 685 4.452455 GGTATCTGGACGCATATTTTCCTG 59.548 45.833 0.00 0.00 0.00 3.86
684 686 4.642429 GGTATCTGGACGCATATTTTCCT 58.358 43.478 0.00 0.00 0.00 3.36
685 687 3.432252 CGGTATCTGGACGCATATTTTCC 59.568 47.826 0.00 0.00 0.00 3.13
686 688 3.432252 CCGGTATCTGGACGCATATTTTC 59.568 47.826 0.00 0.00 0.00 2.29
687 689 3.181458 ACCGGTATCTGGACGCATATTTT 60.181 43.478 4.49 0.00 0.00 1.82
688 690 2.367567 ACCGGTATCTGGACGCATATTT 59.632 45.455 4.49 0.00 0.00 1.40
689 691 1.968493 ACCGGTATCTGGACGCATATT 59.032 47.619 4.49 0.00 0.00 1.28
690 692 1.629043 ACCGGTATCTGGACGCATAT 58.371 50.000 4.49 0.00 0.00 1.78
691 693 2.275134 TACCGGTATCTGGACGCATA 57.725 50.000 11.16 0.00 0.00 3.14
692 694 1.405872 TTACCGGTATCTGGACGCAT 58.594 50.000 16.67 0.00 0.00 4.73
693 695 1.135527 CTTTACCGGTATCTGGACGCA 59.864 52.381 16.67 0.00 0.00 5.24
694 696 1.849097 CTTTACCGGTATCTGGACGC 58.151 55.000 16.67 0.00 0.00 5.19
695 697 1.537562 GGCTTTACCGGTATCTGGACG 60.538 57.143 16.67 0.00 0.00 4.79
696 698 1.761198 AGGCTTTACCGGTATCTGGAC 59.239 52.381 16.67 8.16 46.52 4.02
697 699 2.037144 GAGGCTTTACCGGTATCTGGA 58.963 52.381 16.67 0.00 46.52 3.86
698 700 1.070289 GGAGGCTTTACCGGTATCTGG 59.930 57.143 16.67 7.16 46.52 3.86
699 701 2.040178 AGGAGGCTTTACCGGTATCTG 58.960 52.381 16.67 9.68 46.52 2.90
700 702 2.040178 CAGGAGGCTTTACCGGTATCT 58.960 52.381 16.67 10.73 46.52 1.98
701 703 1.070289 CCAGGAGGCTTTACCGGTATC 59.930 57.143 16.67 9.43 46.52 2.24
702 704 1.129058 CCAGGAGGCTTTACCGGTAT 58.871 55.000 16.67 0.00 46.52 2.73
703 705 0.252375 ACCAGGAGGCTTTACCGGTA 60.252 55.000 11.16 11.16 46.52 4.02
704 706 1.131928 AACCAGGAGGCTTTACCGGT 61.132 55.000 13.98 13.98 46.52 5.28
705 707 0.906775 TAACCAGGAGGCTTTACCGG 59.093 55.000 0.00 0.00 46.52 5.28
706 708 3.277142 AATAACCAGGAGGCTTTACCG 57.723 47.619 0.00 0.00 46.52 4.02
707 709 4.157840 CACAAATAACCAGGAGGCTTTACC 59.842 45.833 0.00 0.00 39.06 2.85
708 710 4.765339 ACACAAATAACCAGGAGGCTTTAC 59.235 41.667 0.00 0.00 39.06 2.01
709 711 4.993028 ACACAAATAACCAGGAGGCTTTA 58.007 39.130 0.00 0.00 39.06 1.85
710 712 3.844640 ACACAAATAACCAGGAGGCTTT 58.155 40.909 0.00 0.00 39.06 3.51
711 713 3.525800 ACACAAATAACCAGGAGGCTT 57.474 42.857 0.00 0.00 39.06 4.35
712 714 3.181434 TGAACACAAATAACCAGGAGGCT 60.181 43.478 0.00 0.00 39.06 4.58
713 715 3.153919 TGAACACAAATAACCAGGAGGC 58.846 45.455 0.00 0.00 39.06 4.70
714 716 4.398319 ACTGAACACAAATAACCAGGAGG 58.602 43.478 0.00 0.00 42.21 4.30
715 717 6.208644 CAAACTGAACACAAATAACCAGGAG 58.791 40.000 0.00 0.00 0.00 3.69
716 718 5.451242 GCAAACTGAACACAAATAACCAGGA 60.451 40.000 0.00 0.00 0.00 3.86
717 719 4.744631 GCAAACTGAACACAAATAACCAGG 59.255 41.667 0.00 0.00 0.00 4.45
718 720 4.440758 CGCAAACTGAACACAAATAACCAG 59.559 41.667 0.00 0.00 0.00 4.00
719 721 4.355437 CGCAAACTGAACACAAATAACCA 58.645 39.130 0.00 0.00 0.00 3.67
720 722 3.733727 CCGCAAACTGAACACAAATAACC 59.266 43.478 0.00 0.00 0.00 2.85
721 723 4.356289 ACCGCAAACTGAACACAAATAAC 58.644 39.130 0.00 0.00 0.00 1.89
722 724 4.640789 ACCGCAAACTGAACACAAATAA 57.359 36.364 0.00 0.00 0.00 1.40
723 725 5.752892 TTACCGCAAACTGAACACAAATA 57.247 34.783 0.00 0.00 0.00 1.40
724 726 4.640789 TTACCGCAAACTGAACACAAAT 57.359 36.364 0.00 0.00 0.00 2.32
725 727 4.436242 TTTACCGCAAACTGAACACAAA 57.564 36.364 0.00 0.00 0.00 2.83
726 728 4.436242 TTTTACCGCAAACTGAACACAA 57.564 36.364 0.00 0.00 0.00 3.33
727 729 4.416620 CTTTTTACCGCAAACTGAACACA 58.583 39.130 0.00 0.00 0.00 3.72
728 730 3.242016 GCTTTTTACCGCAAACTGAACAC 59.758 43.478 0.00 0.00 0.00 3.32
729 731 3.440228 GCTTTTTACCGCAAACTGAACA 58.560 40.909 0.00 0.00 0.00 3.18
730 732 2.466205 CGCTTTTTACCGCAAACTGAAC 59.534 45.455 0.00 0.00 0.00 3.18
731 733 2.722071 CGCTTTTTACCGCAAACTGAA 58.278 42.857 0.00 0.00 0.00 3.02
732 734 2.392933 CGCTTTTTACCGCAAACTGA 57.607 45.000 0.00 0.00 0.00 3.41
739 741 2.202260 GGACGCGCTTTTTACCGC 60.202 61.111 5.73 0.00 46.17 5.68
740 742 2.095096 CGGACGCGCTTTTTACCG 59.905 61.111 5.73 0.86 34.77 4.02
741 743 2.202260 GCGGACGCGCTTTTTACC 60.202 61.111 5.73 0.00 0.00 2.85
742 744 2.202260 GGCGGACGCGCTTTTTAC 60.202 61.111 5.73 0.00 43.06 2.01
758 760 4.020378 CGTGTTTTGCCGGTCGGG 62.020 66.667 11.60 2.06 39.58 5.14
759 761 3.231324 GACGTGTTTTGCCGGTCGG 62.231 63.158 1.90 4.85 38.57 4.79
760 762 2.247267 GACGTGTTTTGCCGGTCG 59.753 61.111 1.90 0.00 0.00 4.79
761 763 2.635338 GGACGTGTTTTGCCGGTC 59.365 61.111 1.90 0.00 0.00 4.79
762 764 3.273834 CGGACGTGTTTTGCCGGT 61.274 61.111 1.90 0.00 40.08 5.28
764 766 4.676586 GCCGGACGTGTTTTGCCG 62.677 66.667 5.05 0.00 43.20 5.69
765 767 4.337060 GGCCGGACGTGTTTTGCC 62.337 66.667 5.05 0.00 0.00 4.52
814 816 1.001393 GGGGAGGCAATTGGTCGAA 60.001 57.895 7.72 0.00 0.00 3.71
827 829 3.771160 CCGGTCAGGTTCGGGGAG 61.771 72.222 0.00 0.00 42.32 4.30
1137 1144 3.627732 ACTATTCGAGCATAGGACACG 57.372 47.619 8.59 0.00 31.77 4.49
1233 1242 1.876799 TCGGCACAACAAATCGTGATT 59.123 42.857 0.00 0.00 35.02 2.57
1234 1243 1.464608 CTCGGCACAACAAATCGTGAT 59.535 47.619 0.00 0.00 35.02 3.06
1638 1651 0.111639 TGTTAACCCCTGGAAGTGGC 59.888 55.000 2.48 0.00 0.00 5.01
1781 1834 2.571202 CCAAAAGGGGTGGCATGTTATT 59.429 45.455 0.00 0.00 0.00 1.40
1787 1840 2.466846 GAATACCAAAAGGGGTGGCAT 58.533 47.619 0.00 0.00 42.39 4.40
1894 1951 5.107220 GCAAAGCCACAATTTCTTTCATCAG 60.107 40.000 0.00 0.00 0.00 2.90
2018 2076 6.475402 GCTATAAGTTTTGTGTTTGTGCAAGT 59.525 34.615 0.00 0.00 0.00 3.16
2219 2278 4.567127 CAGAAACGTGCAACAAACATTTG 58.433 39.130 2.77 2.77 43.62 2.32
2267 2327 4.202040 CCGTGTGATGTTGCATGGAAATAT 60.202 41.667 0.00 0.00 42.72 1.28
2286 2346 1.204062 CGCTGCAAGTTACACCGTG 59.796 57.895 0.00 0.00 35.30 4.94
2303 2363 2.742053 CTGGGACACACAGGTAATTTCG 59.258 50.000 0.00 0.00 32.38 3.46
2786 2855 3.916359 TGTCTTGGGTGTCAACACTTA 57.084 42.857 12.65 0.41 45.73 2.24
2964 3053 1.918800 AGCAACTACCTTCGCCCCT 60.919 57.895 0.00 0.00 0.00 4.79
3233 3322 2.669364 AGAGTACTGTTTTGTACCGCG 58.331 47.619 0.00 0.00 42.58 6.46
3239 3328 9.420551 GCTATAAGTGTAAGAGTACTGTTTTGT 57.579 33.333 10.92 0.57 0.00 2.83
3247 3336 6.428799 CGACCTGCTATAAGTGTAAGAGTAC 58.571 44.000 0.00 0.00 0.00 2.73
3253 3342 5.242393 GGTATCCGACCTGCTATAAGTGTAA 59.758 44.000 0.00 0.00 45.89 2.41
3464 3553 2.076863 CCACCGCTTTAAAGACTCCAG 58.923 52.381 19.48 3.11 0.00 3.86
3519 3608 8.698973 TTAAAATACCAACCATCACTCTTTCA 57.301 30.769 0.00 0.00 0.00 2.69
3546 3635 7.598493 GCAGAATAGCCAAGAGATAAGACTAAG 59.402 40.741 0.00 0.00 0.00 2.18
3718 3810 4.470334 TCAAGGCTGGCAAATTATTTCC 57.530 40.909 3.38 0.00 0.00 3.13
3783 3875 3.586470 TCCTCTGTTTTGGCCTTGTAA 57.414 42.857 3.32 0.00 0.00 2.41
3806 3898 6.857437 AGCCAATTAATAAAAGCTCCAAGT 57.143 33.333 0.00 0.00 0.00 3.16
3880 3972 7.760131 ACAAAGTGTCAACTTCATGAATTTG 57.240 32.000 24.98 24.98 46.15 2.32
3985 4090 1.714794 CTTGGTTGTGTCTAGCGGAG 58.285 55.000 0.00 0.00 0.00 4.63
4109 4293 3.370953 GGCCTGGTCTTCATCAGTTATGT 60.371 47.826 0.00 0.00 36.89 2.29
4119 4303 1.993701 TTGCAGTGGCCTGGTCTTCA 61.994 55.000 3.32 0.00 39.22 3.02
4186 4370 1.687612 CTGGGAGGTCCAATGCACT 59.312 57.895 0.00 0.00 46.51 4.40
4258 4442 1.825474 AGATAGCTTGTAGTGGCACGT 59.175 47.619 12.71 3.39 0.00 4.49
4375 4562 2.488204 TCCACCTTCATGAATGCGAA 57.512 45.000 8.96 0.00 0.00 4.70
4376 4563 2.488204 TTCCACCTTCATGAATGCGA 57.512 45.000 8.96 3.04 0.00 5.10
4377 4564 2.947652 AGATTCCACCTTCATGAATGCG 59.052 45.455 8.96 0.00 0.00 4.73
4378 4565 4.205587 AGAGATTCCACCTTCATGAATGC 58.794 43.478 8.96 0.00 0.00 3.56
4492 4679 7.302350 TCATTGTCTGTACACATTTTATCCG 57.698 36.000 0.00 0.00 34.61 4.18
4532 4726 9.841295 TTTAAACTATCAGCCCGTAAATAATCT 57.159 29.630 0.00 0.00 0.00 2.40
4556 4750 6.925165 CCAAGAGTAAACATGACAAATGCTTT 59.075 34.615 0.00 0.00 0.00 3.51
4572 4766 5.505181 AAATGAGCTCCTTCCAAGAGTAA 57.495 39.130 12.15 0.00 33.69 2.24
4591 4785 2.761767 TGAGCATATGCAGGCACAAAAT 59.238 40.909 28.62 4.43 45.16 1.82
4603 4961 1.806542 GGTTATGGCCGTGAGCATATG 59.193 52.381 13.65 0.00 46.50 1.78
4606 4964 1.523711 CGGTTATGGCCGTGAGCAT 60.524 57.895 17.94 0.00 46.11 3.79
4625 4983 2.029623 GCATTTCTCATCCTGCCACAT 58.970 47.619 0.00 0.00 0.00 3.21
4628 4986 1.683938 CCTGCATTTCTCATCCTGCCA 60.684 52.381 0.00 0.00 33.70 4.92
4629 4987 1.030457 CCTGCATTTCTCATCCTGCC 58.970 55.000 0.00 0.00 33.70 4.85
4681 5039 2.575279 AGCATTCTGGATGTTCAGGTCT 59.425 45.455 0.00 0.00 38.07 3.85
4682 5040 2.996631 AGCATTCTGGATGTTCAGGTC 58.003 47.619 0.00 0.00 38.07 3.85
4683 5041 3.521126 AGTAGCATTCTGGATGTTCAGGT 59.479 43.478 0.00 0.00 38.07 4.00
4684 5042 4.125703 GAGTAGCATTCTGGATGTTCAGG 58.874 47.826 0.00 0.00 38.07 3.86
4685 5043 4.125703 GGAGTAGCATTCTGGATGTTCAG 58.874 47.826 0.00 0.00 38.07 3.02
4686 5044 3.118261 GGGAGTAGCATTCTGGATGTTCA 60.118 47.826 0.00 0.00 38.07 3.18
4687 5045 3.135530 AGGGAGTAGCATTCTGGATGTTC 59.864 47.826 0.00 0.00 38.07 3.18
4688 5046 3.118531 AGGGAGTAGCATTCTGGATGTT 58.881 45.455 0.00 0.00 38.07 2.71
4689 5047 2.703007 GAGGGAGTAGCATTCTGGATGT 59.297 50.000 0.00 0.00 38.07 3.06
4696 5054 3.055819 TGTGAACAGAGGGAGTAGCATTC 60.056 47.826 0.00 0.00 0.00 2.67
4734 5120 9.095065 CCGTATGTAGCTATATTGAAATAACCC 57.905 37.037 8.40 0.00 0.00 4.11
4773 5192 9.764363 TCTCCTGAATCAAATGTATATACACAC 57.236 33.333 17.69 5.55 39.30 3.82
4848 5272 6.147864 TGAAACAAGCAGAGCATACTTTTT 57.852 33.333 0.00 0.00 0.00 1.94
4849 5273 5.772825 TGAAACAAGCAGAGCATACTTTT 57.227 34.783 0.00 0.00 0.00 2.27
4850 5274 5.772825 TTGAAACAAGCAGAGCATACTTT 57.227 34.783 0.00 0.00 0.00 2.66
4851 5275 5.772825 TTTGAAACAAGCAGAGCATACTT 57.227 34.783 0.00 0.00 0.00 2.24
4852 5276 5.772825 TTTTGAAACAAGCAGAGCATACT 57.227 34.783 0.00 0.00 0.00 2.12
4877 5301 7.360946 GGAACGTTATTTGACAGAGCATACTTT 60.361 37.037 0.00 0.00 0.00 2.66
4898 5330 3.584406 ACATGTCTCTCTCTTGGAACG 57.416 47.619 0.00 0.00 0.00 3.95
5109 5541 9.612620 ACGTCTTGCTATTTTAATTCTTTTGAG 57.387 29.630 0.00 0.00 0.00 3.02
5119 5551 7.658575 GGGACCATATACGTCTTGCTATTTTAA 59.341 37.037 0.00 0.00 0.00 1.52
5120 5552 7.156673 GGGACCATATACGTCTTGCTATTTTA 58.843 38.462 0.00 0.00 0.00 1.52
5121 5553 5.995897 GGGACCATATACGTCTTGCTATTTT 59.004 40.000 0.00 0.00 0.00 1.82
5122 5554 5.548406 GGGACCATATACGTCTTGCTATTT 58.452 41.667 0.00 0.00 0.00 1.40
5123 5555 5.148651 GGGACCATATACGTCTTGCTATT 57.851 43.478 0.00 0.00 0.00 1.73
5124 5556 4.803098 GGGACCATATACGTCTTGCTAT 57.197 45.455 0.00 0.00 0.00 2.97
5143 5575 0.760567 TGATCCGAGATGAGGTGGGG 60.761 60.000 0.00 0.00 0.00 4.96
5158 5590 5.860716 GTCTTTTGTTCAGCCAAAGATGATC 59.139 40.000 0.00 0.00 38.43 2.92
5159 5591 5.537674 AGTCTTTTGTTCAGCCAAAGATGAT 59.462 36.000 0.00 0.00 38.43 2.45
5213 5645 1.271379 TGAGGAAAAAGGGAGCGGAAG 60.271 52.381 0.00 0.00 0.00 3.46
5222 5654 4.095782 TCGTCAAACTTGTGAGGAAAAAGG 59.904 41.667 0.00 0.00 38.96 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.