Multiple sequence alignment - TraesCS3D01G294100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G294100 chr3D 100.000 4809 0 0 1 4809 405379532 405374724 0.000000e+00 8881.0
1 TraesCS3D01G294100 chr3D 100.000 3390 0 0 5069 8458 405374464 405371075 0.000000e+00 6261.0
2 TraesCS3D01G294100 chr3D 92.218 257 19 1 1 257 407726956 407726701 6.240000e-96 363.0
3 TraesCS3D01G294100 chr3D 92.188 256 18 2 1 256 549104997 549104744 2.240000e-95 361.0
4 TraesCS3D01G294100 chr3D 91.440 257 21 1 1 257 327577289 327577544 1.350000e-92 351.0
5 TraesCS3D01G294100 chr3D 88.608 237 18 4 2583 2812 180842481 180842247 6.460000e-71 279.0
6 TraesCS3D01G294100 chr3D 97.500 120 3 0 5070 5189 405376824 405376943 1.110000e-48 206.0
7 TraesCS3D01G294100 chr3D 93.077 130 9 0 5069 5198 180840678 180840549 3.120000e-44 191.0
8 TraesCS3D01G294100 chr3D 100.000 30 0 0 1860 1889 405377620 405377591 1.000000e-03 56.5
9 TraesCS3D01G294100 chr3D 100.000 30 0 0 1913 1942 405377673 405377644 1.000000e-03 56.5
10 TraesCS3D01G294100 chr2D 98.481 2238 24 4 2581 4809 634585526 634587762 0.000000e+00 3936.0
11 TraesCS3D01G294100 chr2D 93.890 802 42 3 4010 4809 594193560 594192764 0.000000e+00 1203.0
12 TraesCS3D01G294100 chr2D 94.444 522 28 1 7938 8458 631556468 631555947 0.000000e+00 802.0
13 TraesCS3D01G294100 chr2D 93.910 312 9 8 3198 3505 594193861 594193556 5.980000e-126 462.0
14 TraesCS3D01G294100 chr2D 91.949 236 12 2 2590 2818 634588073 634587838 2.940000e-84 324.0
15 TraesCS3D01G294100 chr2D 90.870 230 13 3 2590 2812 81514788 81515016 1.380000e-77 302.0
16 TraesCS3D01G294100 chr2D 99.213 127 1 0 5069 5195 634587953 634588079 6.600000e-56 230.0
17 TraesCS3D01G294100 chr2D 95.775 142 5 1 2824 2964 594194332 594194191 2.380000e-55 228.0
18 TraesCS3D01G294100 chr2D 96.721 122 4 0 5069 5190 634585656 634585535 4.000000e-48 204.0
19 TraesCS3D01G294100 chr2D 96.694 121 4 0 5069 5189 81514908 81514788 1.440000e-47 202.0
20 TraesCS3D01G294100 chr2D 95.726 117 1 1 2961 3077 594194132 594194020 1.450000e-42 185.0
21 TraesCS3D01G294100 chr2D 92.857 112 7 1 4010 4121 594383545 594383435 2.440000e-35 161.0
22 TraesCS3D01G294100 chr2D 95.402 87 4 0 3111 3197 594194015 594193929 1.140000e-28 139.0
23 TraesCS3D01G294100 chr3A 93.387 2253 96 20 5511 7726 527939139 527936903 0.000000e+00 3286.0
24 TraesCS3D01G294100 chr3A 87.343 1517 87 50 432 1885 527941568 527940094 0.000000e+00 1640.0
25 TraesCS3D01G294100 chr3A 89.429 700 27 13 1913 2590 527940119 527939445 0.000000e+00 839.0
26 TraesCS3D01G294100 chr3A 91.620 179 10 2 5262 5436 527939354 527939177 8.480000e-60 243.0
27 TraesCS3D01G294100 chr3A 93.750 80 5 0 7857 7936 527911113 527911034 4.150000e-23 121.0
28 TraesCS3D01G294100 chr3A 100.000 37 0 0 7720 7756 527933878 527933842 1.520000e-07 69.4
29 TraesCS3D01G294100 chr3B 90.229 1658 96 33 253 1889 531404026 531402414 0.000000e+00 2104.0
30 TraesCS3D01G294100 chr3B 93.942 1040 42 5 6794 7815 531400001 531398965 0.000000e+00 1552.0
31 TraesCS3D01G294100 chr3B 94.923 906 35 7 5809 6706 531400937 531400035 0.000000e+00 1408.0
32 TraesCS3D01G294100 chr3B 94.384 552 17 4 2039 2590 531402352 531401815 0.000000e+00 835.0
33 TraesCS3D01G294100 chr3B 89.247 372 23 8 5190 5550 531401824 531401459 4.660000e-122 449.0
34 TraesCS3D01G294100 chr3B 93.122 189 6 4 5565 5749 531401245 531401060 3.890000e-68 270.0
35 TraesCS3D01G294100 chr3B 97.778 90 2 0 7857 7946 531398971 531398882 1.140000e-33 156.0
36 TraesCS3D01G294100 chr3B 97.531 81 2 0 1913 1993 531402443 531402363 1.140000e-28 139.0
37 TraesCS3D01G294100 chr3B 87.671 73 8 1 5944 6015 822189039 822189111 5.440000e-12 84.2
38 TraesCS3D01G294100 chr3B 95.122 41 2 0 5772 5812 531401057 531401017 1.970000e-06 65.8
39 TraesCS3D01G294100 chr1D 97.619 924 13 3 2590 3505 415211729 415210807 0.000000e+00 1576.0
40 TraesCS3D01G294100 chr1D 99.250 800 6 0 4010 4809 415210811 415210012 0.000000e+00 1445.0
41 TraesCS3D01G294100 chr1D 91.406 256 21 1 1 256 113396097 113396351 4.860000e-92 350.0
42 TraesCS3D01G294100 chr1D 89.781 274 25 3 1 274 334449780 334450050 1.750000e-91 348.0
43 TraesCS3D01G294100 chr1D 92.488 213 9 2 2582 2787 415209707 415209919 1.780000e-76 298.0
44 TraesCS3D01G294100 chr1D 89.216 204 16 5 3501 3700 13395895 13396096 5.070000e-62 250.0
45 TraesCS3D01G294100 chr1D 98.347 121 2 0 5069 5189 415209835 415209715 6.650000e-51 213.0
46 TraesCS3D01G294100 chr6D 96.649 925 21 5 2589 3505 110741324 110742246 0.000000e+00 1528.0
47 TraesCS3D01G294100 chr6D 98.000 800 16 0 4010 4809 110742242 110743041 0.000000e+00 1389.0
48 TraesCS3D01G294100 chr6D 94.942 514 26 0 7945 8458 28328660 28329173 0.000000e+00 806.0
49 TraesCS3D01G294100 chr6D 94.932 513 25 1 7946 8458 365274879 365274368 0.000000e+00 802.0
50 TraesCS3D01G294100 chr6D 90.435 230 14 4 2590 2812 110743351 110743123 6.420000e-76 296.0
51 TraesCS3D01G294100 chr6D 95.868 121 5 0 5069 5189 110743231 110743351 6.700000e-46 196.0
52 TraesCS3D01G294100 chr4B 95.136 514 25 0 7945 8458 251480685 251480172 0.000000e+00 811.0
53 TraesCS3D01G294100 chr4B 88.189 254 24 2 3506 3756 537796735 537796485 1.780000e-76 298.0
54 TraesCS3D01G294100 chr4B 87.008 254 27 2 3506 3756 537798132 537797882 1.800000e-71 281.0
55 TraesCS3D01G294100 chr2A 95.136 514 25 0 7945 8458 277161402 277161915 0.000000e+00 811.0
56 TraesCS3D01G294100 chr2A 90.365 602 45 5 4216 4809 728777408 728776812 0.000000e+00 778.0
57 TraesCS3D01G294100 chr2A 86.053 380 40 8 3134 3505 728778762 728778388 6.150000e-106 396.0
58 TraesCS3D01G294100 chr2A 86.139 101 13 1 4010 4110 728778392 728778293 3.230000e-19 108.0
59 TraesCS3D01G294100 chr6A 94.971 517 25 1 7942 8458 420104 420619 0.000000e+00 809.0
60 TraesCS3D01G294100 chr6A 94.872 39 2 0 7333 7371 198178971 198178933 2.550000e-05 62.1
61 TraesCS3D01G294100 chr5A 95.127 513 25 0 7946 8458 692668305 692668817 0.000000e+00 809.0
62 TraesCS3D01G294100 chr5A 86.047 215 21 8 3501 3709 701186765 701186976 1.110000e-53 222.0
63 TraesCS3D01G294100 chr5A 85.047 214 25 6 3501 3709 701185479 701185690 2.390000e-50 211.0
64 TraesCS3D01G294100 chr5A 84.762 210 26 5 3505 3709 701184197 701184405 1.110000e-48 206.0
65 TraesCS3D01G294100 chr4A 95.127 513 25 0 7946 8458 636385481 636384969 0.000000e+00 809.0
66 TraesCS3D01G294100 chr4A 83.224 459 41 22 3559 4010 620025255 620024826 1.030000e-103 388.0
67 TraesCS3D01G294100 chr4A 82.571 459 44 22 3559 4010 620023873 620023444 1.040000e-98 372.0
68 TraesCS3D01G294100 chr4A 82.533 458 42 24 3559 4009 620021108 620020682 1.340000e-97 368.0
69 TraesCS3D01G294100 chr1B 94.932 513 26 0 7946 8458 327736118 327735606 0.000000e+00 804.0
70 TraesCS3D01G294100 chr1B 94.767 172 7 2 3501 3672 616024967 616024798 5.030000e-67 267.0
71 TraesCS3D01G294100 chr1B 92.778 180 12 1 3495 3674 95443177 95443355 8.420000e-65 259.0
72 TraesCS3D01G294100 chr5D 87.767 515 24 14 3503 4016 11338859 11339335 4.430000e-157 566.0
73 TraesCS3D01G294100 chr5D 91.440 257 21 1 1 257 548034928 548034673 1.350000e-92 351.0
74 TraesCS3D01G294100 chr5D 94.350 177 9 1 3498 3674 510564969 510565144 3.890000e-68 270.0
75 TraesCS3D01G294100 chr5D 90.566 53 3 1 5942 5992 445068608 445068556 1.520000e-07 69.4
76 TraesCS3D01G294100 chr5D 96.970 33 0 1 5945 5977 455821212 455821243 4.000000e-03 54.7
77 TraesCS3D01G294100 chr2B 95.608 296 10 2 4505 4798 721281260 721280966 9.940000e-129 472.0
78 TraesCS3D01G294100 chr2B 87.372 293 18 6 2961 3234 721285934 721285642 1.370000e-82 318.0
79 TraesCS3D01G294100 chr2B 87.692 130 12 2 2834 2959 721286102 721285973 1.900000e-31 148.0
80 TraesCS3D01G294100 chr7A 86.207 406 33 6 3613 4007 723393510 723393903 1.310000e-112 418.0
81 TraesCS3D01G294100 chr7A 83.761 468 42 14 3559 4010 723392123 723392572 6.110000e-111 412.0
82 TraesCS3D01G294100 chr7A 89.552 67 5 2 5947 6012 42246834 42246899 5.440000e-12 84.2
83 TraesCS3D01G294100 chr5B 83.224 459 41 22 3559 4010 692885200 692884771 1.030000e-103 388.0
84 TraesCS3D01G294100 chr5B 82.237 456 43 23 3559 4009 692883824 692883402 8.070000e-95 359.0
85 TraesCS3D01G294100 chr5B 91.829 257 20 1 1 257 100032058 100032313 2.900000e-94 357.0
86 TraesCS3D01G294100 chr5B 81.760 466 48 22 3551 4010 692887904 692887470 1.040000e-93 355.0
87 TraesCS3D01G294100 chr6B 82.609 460 44 23 3556 4010 310779382 310779810 2.880000e-99 374.0
88 TraesCS3D01G294100 chr6B 92.166 217 10 2 2586 2795 507371674 507371890 4.960000e-77 300.0
89 TraesCS3D01G294100 chr6B 96.774 124 4 0 5069 5192 507371798 507371675 3.090000e-49 207.0
90 TraesCS3D01G294100 chr6B 83.908 87 8 6 7282 7365 261585441 261585524 2.530000e-10 78.7
91 TraesCS3D01G294100 chr7B 82.727 440 42 21 3575 4009 719656469 719656879 2.240000e-95 361.0
92 TraesCS3D01G294100 chr7B 94.220 173 9 1 3502 3674 730914549 730914720 6.510000e-66 263.0
93 TraesCS3D01G294100 chr4D 91.829 257 20 1 1 257 470150207 470150462 2.900000e-94 357.0
94 TraesCS3D01G294100 chr4D 96.694 121 4 0 5069 5189 455257916 455257796 1.440000e-47 202.0
95 TraesCS3D01G294100 chrUn 91.440 257 21 1 1 257 122421253 122420998 1.350000e-92 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G294100 chr3D 405371075 405379532 8457 True 3813.750000 8881 100.000000 1 8458 4 chr3D.!!$R4 8457
1 TraesCS3D01G294100 chr3D 180840549 180842481 1932 True 235.000000 279 90.842500 2583 5198 2 chr3D.!!$R3 2615
2 TraesCS3D01G294100 chr2D 634585526 634588079 2553 False 2083.000000 3936 98.847000 2581 5195 2 chr2D.!!$F2 2614
3 TraesCS3D01G294100 chr2D 631555947 631556468 521 True 802.000000 802 94.444000 7938 8458 1 chr2D.!!$R3 520
4 TraesCS3D01G294100 chr2D 594192764 594194332 1568 True 443.400000 1203 94.940600 2824 4809 5 chr2D.!!$R4 1985
5 TraesCS3D01G294100 chr2D 634585535 634588073 2538 True 264.000000 324 94.335000 2590 5190 2 chr2D.!!$R5 2600
6 TraesCS3D01G294100 chr3A 527933842 527941568 7726 True 1215.480000 3286 92.355800 432 7756 5 chr3A.!!$R2 7324
7 TraesCS3D01G294100 chr3B 531398882 531404026 5144 True 775.422222 2104 94.030889 253 7946 9 chr3B.!!$R1 7693
8 TraesCS3D01G294100 chr1D 415209715 415211729 2014 True 1078.000000 1576 98.405333 2590 5189 3 chr1D.!!$R1 2599
9 TraesCS3D01G294100 chr6D 110741324 110743351 2027 False 1037.666667 1528 96.839000 2589 5189 3 chr6D.!!$F2 2600
10 TraesCS3D01G294100 chr6D 28328660 28329173 513 False 806.000000 806 94.942000 7945 8458 1 chr6D.!!$F1 513
11 TraesCS3D01G294100 chr6D 365274368 365274879 511 True 802.000000 802 94.932000 7946 8458 1 chr6D.!!$R2 512
12 TraesCS3D01G294100 chr4B 251480172 251480685 513 True 811.000000 811 95.136000 7945 8458 1 chr4B.!!$R1 513
13 TraesCS3D01G294100 chr4B 537796485 537798132 1647 True 289.500000 298 87.598500 3506 3756 2 chr4B.!!$R2 250
14 TraesCS3D01G294100 chr2A 277161402 277161915 513 False 811.000000 811 95.136000 7945 8458 1 chr2A.!!$F1 513
15 TraesCS3D01G294100 chr2A 728776812 728778762 1950 True 427.333333 778 87.519000 3134 4809 3 chr2A.!!$R1 1675
16 TraesCS3D01G294100 chr6A 420104 420619 515 False 809.000000 809 94.971000 7942 8458 1 chr6A.!!$F1 516
17 TraesCS3D01G294100 chr5A 692668305 692668817 512 False 809.000000 809 95.127000 7946 8458 1 chr5A.!!$F1 512
18 TraesCS3D01G294100 chr5A 701184197 701186976 2779 False 213.000000 222 85.285333 3501 3709 3 chr5A.!!$F2 208
19 TraesCS3D01G294100 chr4A 636384969 636385481 512 True 809.000000 809 95.127000 7946 8458 1 chr4A.!!$R1 512
20 TraesCS3D01G294100 chr4A 620020682 620025255 4573 True 376.000000 388 82.776000 3559 4010 3 chr4A.!!$R2 451
21 TraesCS3D01G294100 chr1B 327735606 327736118 512 True 804.000000 804 94.932000 7946 8458 1 chr1B.!!$R1 512
22 TraesCS3D01G294100 chr7A 723392123 723393903 1780 False 415.000000 418 84.984000 3559 4010 2 chr7A.!!$F2 451
23 TraesCS3D01G294100 chr5B 692883402 692887904 4502 True 367.333333 388 82.407000 3551 4010 3 chr5B.!!$R1 459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.179129 CCGGGCATGCTTTCATTGAC 60.179 55.000 18.92 0.00 0.00 3.18 F
229 230 0.179225 GCGGTGCACAACGTAAGATG 60.179 55.000 20.43 0.00 44.66 2.90 F
1597 1671 0.104487 CAGCCAAACAATGTGTGCCA 59.896 50.000 0.00 0.00 0.00 4.92 F
2323 2433 0.037697 TACGCGTCTTGGTCTGCAAT 60.038 50.000 18.63 0.00 0.00 3.56 F
2581 2691 0.035820 GCCTCGGGTGTACAATGGAA 60.036 55.000 0.00 0.00 0.00 3.53 F
2582 2692 1.612199 GCCTCGGGTGTACAATGGAAA 60.612 52.381 0.00 0.00 0.00 3.13 F
4344 13886 2.166459 GAGTGTGTATGTAGCAGCAGGA 59.834 50.000 0.00 0.00 0.00 3.86 F
5420 16970 1.022735 CATCTCTGATGTTGGCAGCC 58.977 55.000 3.66 3.66 33.45 4.85 F
6107 17958 0.108945 GCAAAACAGGCCTGCTCATC 60.109 55.000 33.06 15.31 33.20 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1652 0.104487 TGGCACACATTGTTTGGCTG 59.896 50.000 24.34 0.34 39.11 4.85 R
1692 1773 1.605710 CAACTGAAGCAGGAGGTGTTG 59.394 52.381 0.00 0.00 35.51 3.33 R
2451 2561 1.004560 CCATGTGAGTGACCACGCT 60.005 57.895 5.56 0.00 39.80 5.07 R
3948 12658 2.474266 CGTGTGTGTGCCGCATAC 59.526 61.111 12.96 12.96 39.31 2.39 R
4344 13886 5.036916 TGGTGGGTAGTTATCCTCAAGAAT 58.963 41.667 0.00 0.00 0.00 2.40 R
4439 13984 5.738370 CAGGAAGAAACAAACGAGTTACAG 58.262 41.667 0.00 0.00 0.00 2.74 R
6057 17908 1.004628 TGCTCATGTTAGTGCCATGGT 59.995 47.619 14.67 0.00 40.07 3.55 R
6507 18372 1.371267 CAAGTCGACGGTCTGCGAA 60.371 57.895 10.46 0.00 38.36 4.70 R
7826 23123 0.264955 AGGGGCGATCCTCCTTCTAA 59.735 55.000 0.00 0.00 31.22 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.867445 AATAATTTCAAAACACTTAGGCACG 57.133 32.000 0.00 0.00 0.00 5.34
26 27 3.701532 TTTCAAAACACTTAGGCACGG 57.298 42.857 0.00 0.00 0.00 4.94
27 28 2.335316 TCAAAACACTTAGGCACGGT 57.665 45.000 0.00 0.00 0.00 4.83
28 29 3.472283 TCAAAACACTTAGGCACGGTA 57.528 42.857 0.00 0.00 0.00 4.02
29 30 3.132925 TCAAAACACTTAGGCACGGTAC 58.867 45.455 0.00 0.00 0.00 3.34
30 31 2.873472 CAAAACACTTAGGCACGGTACA 59.127 45.455 0.00 0.00 0.00 2.90
31 32 3.412237 AAACACTTAGGCACGGTACAT 57.588 42.857 0.00 0.00 0.00 2.29
32 33 3.412237 AACACTTAGGCACGGTACATT 57.588 42.857 0.00 0.00 0.00 2.71
33 34 4.540359 AACACTTAGGCACGGTACATTA 57.460 40.909 0.00 0.00 0.00 1.90
34 35 4.540359 ACACTTAGGCACGGTACATTAA 57.460 40.909 0.00 0.00 0.00 1.40
35 36 4.248058 ACACTTAGGCACGGTACATTAAC 58.752 43.478 0.00 0.00 0.00 2.01
36 37 4.020839 ACACTTAGGCACGGTACATTAACT 60.021 41.667 0.00 0.00 0.00 2.24
37 38 4.933400 CACTTAGGCACGGTACATTAACTT 59.067 41.667 0.00 0.00 0.00 2.66
38 39 5.410439 CACTTAGGCACGGTACATTAACTTT 59.590 40.000 0.00 0.00 0.00 2.66
39 40 5.640783 ACTTAGGCACGGTACATTAACTTTC 59.359 40.000 0.00 0.00 0.00 2.62
40 41 4.281898 AGGCACGGTACATTAACTTTCT 57.718 40.909 0.00 0.00 0.00 2.52
41 42 4.648651 AGGCACGGTACATTAACTTTCTT 58.351 39.130 0.00 0.00 0.00 2.52
42 43 4.694037 AGGCACGGTACATTAACTTTCTTC 59.306 41.667 0.00 0.00 0.00 2.87
43 44 4.694037 GGCACGGTACATTAACTTTCTTCT 59.306 41.667 0.00 0.00 0.00 2.85
44 45 5.180680 GGCACGGTACATTAACTTTCTTCTT 59.819 40.000 0.00 0.00 0.00 2.52
45 46 6.293790 GGCACGGTACATTAACTTTCTTCTTT 60.294 38.462 0.00 0.00 0.00 2.52
46 47 6.577427 GCACGGTACATTAACTTTCTTCTTTG 59.423 38.462 0.00 0.00 0.00 2.77
47 48 7.636326 CACGGTACATTAACTTTCTTCTTTGT 58.364 34.615 0.00 0.00 0.00 2.83
48 49 8.126700 CACGGTACATTAACTTTCTTCTTTGTT 58.873 33.333 0.00 0.00 0.00 2.83
49 50 8.680001 ACGGTACATTAACTTTCTTCTTTGTTT 58.320 29.630 0.00 0.00 0.00 2.83
50 51 9.511144 CGGTACATTAACTTTCTTCTTTGTTTT 57.489 29.630 0.00 0.00 0.00 2.43
73 74 8.777865 TTTTTGTTTTGTGACATATCAACCAA 57.222 26.923 0.12 0.00 36.31 3.67
74 75 8.954950 TTTTGTTTTGTGACATATCAACCAAT 57.045 26.923 0.12 0.00 36.31 3.16
93 94 2.525381 AAAAATGTGGGCCGGGCA 60.525 55.556 30.95 13.31 0.00 5.36
94 95 1.917787 AAAAATGTGGGCCGGGCAT 60.918 52.632 30.95 12.29 0.00 4.40
95 96 2.182732 AAAAATGTGGGCCGGGCATG 62.183 55.000 30.95 0.00 0.00 4.06
102 103 3.149648 GGCCGGGCATGCTTTCAT 61.150 61.111 25.33 0.00 0.00 2.57
103 104 2.724273 GGCCGGGCATGCTTTCATT 61.724 57.895 25.33 0.00 0.00 2.57
104 105 1.519898 GCCGGGCATGCTTTCATTG 60.520 57.895 18.92 0.85 0.00 2.82
105 106 1.947597 GCCGGGCATGCTTTCATTGA 61.948 55.000 18.92 0.00 0.00 2.57
106 107 0.179129 CCGGGCATGCTTTCATTGAC 60.179 55.000 18.92 0.00 0.00 3.18
107 108 0.813184 CGGGCATGCTTTCATTGACT 59.187 50.000 18.92 0.00 0.00 3.41
108 109 1.203052 CGGGCATGCTTTCATTGACTT 59.797 47.619 18.92 0.00 0.00 3.01
109 110 2.733227 CGGGCATGCTTTCATTGACTTC 60.733 50.000 18.92 0.00 0.00 3.01
110 111 2.231964 GGGCATGCTTTCATTGACTTCA 59.768 45.455 18.92 0.00 0.00 3.02
111 112 3.508762 GGCATGCTTTCATTGACTTCAG 58.491 45.455 18.92 0.00 0.00 3.02
112 113 3.192001 GGCATGCTTTCATTGACTTCAGA 59.808 43.478 18.92 0.00 0.00 3.27
113 114 4.142227 GGCATGCTTTCATTGACTTCAGAT 60.142 41.667 18.92 0.00 0.00 2.90
114 115 5.408356 GCATGCTTTCATTGACTTCAGATT 58.592 37.500 11.37 0.00 0.00 2.40
115 116 6.405065 GGCATGCTTTCATTGACTTCAGATTA 60.405 38.462 18.92 0.00 0.00 1.75
116 117 6.471519 GCATGCTTTCATTGACTTCAGATTAC 59.528 38.462 11.37 0.00 0.00 1.89
117 118 6.500684 TGCTTTCATTGACTTCAGATTACC 57.499 37.500 0.00 0.00 0.00 2.85
118 119 6.003326 TGCTTTCATTGACTTCAGATTACCA 58.997 36.000 0.00 0.00 0.00 3.25
119 120 6.489700 TGCTTTCATTGACTTCAGATTACCAA 59.510 34.615 0.00 0.00 0.00 3.67
120 121 7.014134 TGCTTTCATTGACTTCAGATTACCAAA 59.986 33.333 0.00 0.00 0.00 3.28
121 122 7.327032 GCTTTCATTGACTTCAGATTACCAAAC 59.673 37.037 0.00 0.00 0.00 2.93
122 123 7.815840 TTCATTGACTTCAGATTACCAAACA 57.184 32.000 0.00 0.00 0.00 2.83
123 124 8.408043 TTCATTGACTTCAGATTACCAAACAT 57.592 30.769 0.00 0.00 0.00 2.71
124 125 7.819644 TCATTGACTTCAGATTACCAAACATG 58.180 34.615 0.00 0.00 0.00 3.21
125 126 7.665145 TCATTGACTTCAGATTACCAAACATGA 59.335 33.333 0.00 0.00 0.00 3.07
126 127 6.801539 TGACTTCAGATTACCAAACATGAC 57.198 37.500 0.00 0.00 0.00 3.06
127 128 6.295249 TGACTTCAGATTACCAAACATGACA 58.705 36.000 0.00 0.00 0.00 3.58
128 129 6.942005 TGACTTCAGATTACCAAACATGACAT 59.058 34.615 0.00 0.00 0.00 3.06
129 130 8.100164 TGACTTCAGATTACCAAACATGACATA 58.900 33.333 0.00 0.00 0.00 2.29
130 131 8.268850 ACTTCAGATTACCAAACATGACATAC 57.731 34.615 0.00 0.00 0.00 2.39
131 132 7.882791 ACTTCAGATTACCAAACATGACATACA 59.117 33.333 0.00 0.00 0.00 2.29
132 133 7.848223 TCAGATTACCAAACATGACATACAG 57.152 36.000 0.00 0.00 0.00 2.74
133 134 7.394016 TCAGATTACCAAACATGACATACAGT 58.606 34.615 0.00 0.00 0.00 3.55
134 135 7.334171 TCAGATTACCAAACATGACATACAGTG 59.666 37.037 0.00 0.00 0.00 3.66
135 136 6.599244 AGATTACCAAACATGACATACAGTGG 59.401 38.462 0.00 0.00 0.00 4.00
136 137 4.098914 ACCAAACATGACATACAGTGGT 57.901 40.909 0.00 6.48 32.40 4.16
137 138 4.469657 ACCAAACATGACATACAGTGGTT 58.530 39.130 0.00 0.00 32.96 3.67
138 139 5.626142 ACCAAACATGACATACAGTGGTTA 58.374 37.500 0.00 0.00 32.96 2.85
139 140 5.705441 ACCAAACATGACATACAGTGGTTAG 59.295 40.000 0.00 0.00 32.96 2.34
140 141 5.705441 CCAAACATGACATACAGTGGTTAGT 59.295 40.000 0.00 0.00 0.00 2.24
141 142 6.206634 CCAAACATGACATACAGTGGTTAGTT 59.793 38.462 0.00 0.00 0.00 2.24
142 143 7.298122 CAAACATGACATACAGTGGTTAGTTC 58.702 38.462 0.00 0.00 0.00 3.01
143 144 6.109156 ACATGACATACAGTGGTTAGTTCA 57.891 37.500 0.00 0.00 0.00 3.18
144 145 6.711277 ACATGACATACAGTGGTTAGTTCAT 58.289 36.000 0.00 0.00 0.00 2.57
145 146 7.168219 ACATGACATACAGTGGTTAGTTCATT 58.832 34.615 0.00 0.00 0.00 2.57
146 147 8.318412 ACATGACATACAGTGGTTAGTTCATTA 58.682 33.333 0.00 0.00 0.00 1.90
147 148 8.604035 CATGACATACAGTGGTTAGTTCATTAC 58.396 37.037 0.00 0.00 0.00 1.89
148 149 7.672240 TGACATACAGTGGTTAGTTCATTACA 58.328 34.615 0.00 0.00 0.00 2.41
149 150 8.318412 TGACATACAGTGGTTAGTTCATTACAT 58.682 33.333 0.00 0.00 0.00 2.29
150 151 8.492673 ACATACAGTGGTTAGTTCATTACATG 57.507 34.615 0.00 0.00 0.00 3.21
151 152 5.880054 ACAGTGGTTAGTTCATTACATGC 57.120 39.130 0.00 0.00 0.00 4.06
152 153 5.312895 ACAGTGGTTAGTTCATTACATGCA 58.687 37.500 0.00 0.00 0.00 3.96
153 154 5.767665 ACAGTGGTTAGTTCATTACATGCAA 59.232 36.000 0.00 0.00 0.00 4.08
154 155 6.434028 ACAGTGGTTAGTTCATTACATGCAAT 59.566 34.615 0.00 0.00 0.00 3.56
203 204 1.232119 TTTTCGTTTTCCTCTCCGCC 58.768 50.000 0.00 0.00 0.00 6.13
204 205 0.395312 TTTCGTTTTCCTCTCCGCCT 59.605 50.000 0.00 0.00 0.00 5.52
205 206 0.395312 TTCGTTTTCCTCTCCGCCTT 59.605 50.000 0.00 0.00 0.00 4.35
206 207 1.259609 TCGTTTTCCTCTCCGCCTTA 58.740 50.000 0.00 0.00 0.00 2.69
207 208 1.203994 TCGTTTTCCTCTCCGCCTTAG 59.796 52.381 0.00 0.00 0.00 2.18
208 209 1.067071 CGTTTTCCTCTCCGCCTTAGT 60.067 52.381 0.00 0.00 0.00 2.24
209 210 2.619147 GTTTTCCTCTCCGCCTTAGTC 58.381 52.381 0.00 0.00 0.00 2.59
210 211 0.815734 TTTCCTCTCCGCCTTAGTCG 59.184 55.000 0.00 0.00 0.00 4.18
211 212 1.664321 TTCCTCTCCGCCTTAGTCGC 61.664 60.000 0.00 0.00 0.00 5.19
218 219 3.488090 GCCTTAGTCGCGGTGCAC 61.488 66.667 8.80 8.80 0.00 4.57
219 220 2.048597 CCTTAGTCGCGGTGCACA 60.049 61.111 20.43 0.00 0.00 4.57
220 221 1.666553 CCTTAGTCGCGGTGCACAA 60.667 57.895 20.43 0.92 0.00 3.33
221 222 1.491563 CTTAGTCGCGGTGCACAAC 59.508 57.895 20.43 8.80 0.00 3.32
222 223 2.210524 CTTAGTCGCGGTGCACAACG 62.211 60.000 20.43 20.67 45.82 4.10
223 224 2.957484 TTAGTCGCGGTGCACAACGT 62.957 55.000 24.25 12.82 44.66 3.99
224 225 2.127634 TAGTCGCGGTGCACAACGTA 62.128 55.000 24.25 11.99 44.66 3.57
225 226 2.279318 TCGCGGTGCACAACGTAA 60.279 55.556 24.25 8.80 44.66 3.18
226 227 2.170036 CGCGGTGCACAACGTAAG 59.830 61.111 20.43 6.32 44.66 2.34
227 228 2.304401 CGCGGTGCACAACGTAAGA 61.304 57.895 20.43 0.00 44.66 2.10
228 229 1.623081 CGCGGTGCACAACGTAAGAT 61.623 55.000 20.43 0.00 44.66 2.40
229 230 0.179225 GCGGTGCACAACGTAAGATG 60.179 55.000 20.43 0.00 44.66 2.90
230 231 1.424403 CGGTGCACAACGTAAGATGA 58.576 50.000 20.43 0.00 43.67 2.92
231 232 1.126113 CGGTGCACAACGTAAGATGAC 59.874 52.381 20.43 0.00 43.67 3.06
232 233 2.413837 GGTGCACAACGTAAGATGACT 58.586 47.619 20.43 0.00 43.67 3.41
233 234 2.806244 GGTGCACAACGTAAGATGACTT 59.194 45.455 20.43 0.00 43.67 3.01
234 235 3.991773 GGTGCACAACGTAAGATGACTTA 59.008 43.478 20.43 0.00 43.67 2.24
246 247 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
247 248 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
248 249 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
249 250 3.489355 TGACTTACACACCTAGACGGAA 58.511 45.455 0.00 0.00 36.31 4.30
250 251 3.254166 TGACTTACACACCTAGACGGAAC 59.746 47.826 0.00 0.00 36.31 3.62
282 283 7.914537 AATAAAAGCAAAGAAACTGAAGACG 57.085 32.000 0.00 0.00 0.00 4.18
328 329 3.326109 GTGTACACCACGGCACAC 58.674 61.111 15.42 1.77 33.61 3.82
346 347 1.083489 ACGGCATGTTGGTTATCGTG 58.917 50.000 0.00 0.00 0.00 4.35
354 355 2.365941 TGTTGGTTATCGTGTGACTCCA 59.634 45.455 0.00 0.00 0.00 3.86
376 377 2.284263 TGCAGTGACGAGCAGATTAG 57.716 50.000 1.76 0.00 35.51 1.73
384 385 3.701542 TGACGAGCAGATTAGACTTCCAT 59.298 43.478 0.00 0.00 0.00 3.41
443 445 0.387202 GCAGCTCCTCTCGCTAATGA 59.613 55.000 0.00 0.00 35.63 2.57
444 446 1.000731 GCAGCTCCTCTCGCTAATGAT 59.999 52.381 0.00 0.00 35.63 2.45
480 482 1.819903 GACCTCACCTCACACCTACTC 59.180 57.143 0.00 0.00 0.00 2.59
533 535 7.645340 CGATCATTGGTGGACTCATTTTTATTC 59.355 37.037 0.00 0.00 0.00 1.75
579 588 3.121030 CAGCACTGTAGCGGTGGC 61.121 66.667 9.74 3.18 40.72 5.01
585 594 4.308458 TGTAGCGGTGGCGCAGTT 62.308 61.111 10.83 0.00 46.35 3.16
655 668 0.830023 CAGGTAGCCTCTAGAGCCCC 60.830 65.000 14.73 10.10 0.00 5.80
724 738 1.925455 ACCAGACCCCATCCCTGTG 60.925 63.158 0.00 0.00 0.00 3.66
923 959 2.203998 CCACTCCACCTCCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
935 971 0.252284 TCCCACCTCCCACTCTTCTC 60.252 60.000 0.00 0.00 0.00 2.87
938 974 1.577736 CACCTCCCACTCTTCTCCAT 58.422 55.000 0.00 0.00 0.00 3.41
957 993 4.506039 TCGAGGACGAAAGGGTGA 57.494 55.556 0.00 0.00 45.74 4.02
958 994 2.264124 TCGAGGACGAAAGGGTGAG 58.736 57.895 0.00 0.00 45.74 3.51
967 1003 0.912006 GAAAGGGTGAGGAGGGAGCT 60.912 60.000 0.00 0.00 0.00 4.09
984 1029 2.128729 CTGGGGGACTAGCTGCTAC 58.871 63.158 5.02 0.00 29.71 3.58
987 1032 2.026301 GGGACTAGCTGCTACGCG 59.974 66.667 3.53 3.53 34.40 6.01
988 1033 2.026301 GGACTAGCTGCTACGCGG 59.974 66.667 12.47 0.00 38.08 6.46
989 1034 2.478890 GGACTAGCTGCTACGCGGA 61.479 63.158 12.47 0.00 37.02 5.54
1101 1149 1.105167 CGGTGGAGGACGGTATGCTA 61.105 60.000 0.00 0.00 0.00 3.49
1145 1193 1.691482 CCCCCTTTCTCGACCCATAGA 60.691 57.143 0.00 0.00 0.00 1.98
1146 1194 2.330216 CCCCTTTCTCGACCCATAGAT 58.670 52.381 0.00 0.00 0.00 1.98
1147 1195 3.507411 CCCCTTTCTCGACCCATAGATA 58.493 50.000 0.00 0.00 0.00 1.98
1148 1196 3.511934 CCCCTTTCTCGACCCATAGATAG 59.488 52.174 0.00 0.00 0.00 2.08
1149 1197 3.056465 CCCTTTCTCGACCCATAGATAGC 60.056 52.174 0.00 0.00 0.00 2.97
1150 1198 3.829601 CCTTTCTCGACCCATAGATAGCT 59.170 47.826 0.00 0.00 0.00 3.32
1161 1219 4.322650 CCCATAGATAGCTTTGCTCTCCTC 60.323 50.000 0.00 0.00 40.44 3.71
1163 1221 5.472148 CATAGATAGCTTTGCTCTCCTCTG 58.528 45.833 0.00 0.00 40.44 3.35
1165 1223 4.541705 AGATAGCTTTGCTCTCCTCTGTA 58.458 43.478 0.00 0.00 40.44 2.74
1182 1240 2.928757 CTGTAGTCTGCAACTGCTCATC 59.071 50.000 14.49 0.00 40.89 2.92
1205 1263 0.953960 AGCGATTTCGGCCGTCTTTT 60.954 50.000 27.15 6.79 40.23 2.27
1255 1313 8.898761 TCAGATCTCATCAGTAGTAGAGAAAAC 58.101 37.037 0.00 0.00 40.19 2.43
1275 1333 0.974010 CATGGGCCTTGGAGCATTGT 60.974 55.000 11.46 0.00 0.00 2.71
1294 1352 4.284829 TGTGTGCATTAGGAATCACAGA 57.715 40.909 0.00 0.00 39.73 3.41
1295 1353 4.847198 TGTGTGCATTAGGAATCACAGAT 58.153 39.130 0.00 0.00 39.73 2.90
1448 1511 1.675641 GCAGAGCGGGACCAACAAT 60.676 57.895 0.00 0.00 0.00 2.71
1454 1517 4.038763 CAGAGCGGGACCAACAATATAGTA 59.961 45.833 0.00 0.00 0.00 1.82
1455 1518 4.038883 AGAGCGGGACCAACAATATAGTAC 59.961 45.833 0.00 0.00 0.00 2.73
1456 1519 3.965347 AGCGGGACCAACAATATAGTACT 59.035 43.478 0.00 0.00 0.00 2.73
1457 1520 5.142639 AGCGGGACCAACAATATAGTACTA 58.857 41.667 4.77 4.77 0.00 1.82
1458 1521 5.243283 AGCGGGACCAACAATATAGTACTAG 59.757 44.000 8.85 0.00 0.00 2.57
1459 1522 5.010415 GCGGGACCAACAATATAGTACTAGT 59.990 44.000 8.85 0.00 0.00 2.57
1463 1526 7.650903 GGGACCAACAATATAGTACTAGTTTCG 59.349 40.741 8.85 2.85 0.00 3.46
1509 1583 7.547227 TCTGATACGAATCATTCAGAGTTCAA 58.453 34.615 0.00 0.00 41.29 2.69
1546 1620 5.547181 AACGCTAGCTGTAATTTCCTTTC 57.453 39.130 13.93 0.00 0.00 2.62
1547 1621 3.617263 ACGCTAGCTGTAATTTCCTTTCG 59.383 43.478 13.93 0.00 0.00 3.46
1552 1626 6.861572 GCTAGCTGTAATTTCCTTTCGTTTTT 59.138 34.615 7.70 0.00 0.00 1.94
1554 1628 5.462068 AGCTGTAATTTCCTTTCGTTTTTGC 59.538 36.000 0.00 0.00 0.00 3.68
1561 1635 2.955660 TCCTTTCGTTTTTGCCATGTCT 59.044 40.909 0.00 0.00 0.00 3.41
1578 1652 5.064452 CCATGTCTTGTTATCAGCTCTGAAC 59.936 44.000 3.47 0.00 43.58 3.18
1588 1662 1.677576 CAGCTCTGAACAGCCAAACAA 59.322 47.619 0.00 0.00 40.65 2.83
1591 1665 2.035066 GCTCTGAACAGCCAAACAATGT 59.965 45.455 0.00 0.00 32.76 2.71
1592 1666 3.635331 CTCTGAACAGCCAAACAATGTG 58.365 45.455 0.00 0.00 0.00 3.21
1593 1667 3.023119 TCTGAACAGCCAAACAATGTGT 58.977 40.909 0.00 0.00 0.00 3.72
1594 1668 3.117794 CTGAACAGCCAAACAATGTGTG 58.882 45.455 0.00 0.00 0.00 3.82
1595 1669 1.860326 GAACAGCCAAACAATGTGTGC 59.140 47.619 0.00 0.00 0.00 4.57
1596 1670 0.104671 ACAGCCAAACAATGTGTGCC 59.895 50.000 0.00 0.00 0.00 5.01
1597 1671 0.104487 CAGCCAAACAATGTGTGCCA 59.896 50.000 0.00 0.00 0.00 4.92
1598 1672 0.390124 AGCCAAACAATGTGTGCCAG 59.610 50.000 0.00 0.00 0.00 4.85
1605 1679 1.228552 AATGTGTGCCAGTGTCCCC 60.229 57.895 0.00 0.00 0.00 4.81
1621 1695 2.050442 CCGTCTTGCGCCAAAACC 60.050 61.111 4.18 0.00 39.71 3.27
1688 1769 5.358298 GGATACGAGTTTTCAACTTTGCT 57.642 39.130 0.00 0.00 43.03 3.91
1692 1773 7.322938 GGATACGAGTTTTCAACTTTGCTTAAC 59.677 37.037 0.00 0.00 43.03 2.01
1884 1970 6.014242 AGGTGAGTCTCATATCTTTGTGACAA 60.014 38.462 5.68 0.00 40.73 3.18
1885 1971 6.312426 GGTGAGTCTCATATCTTTGTGACAAG 59.688 42.308 5.68 0.00 40.73 3.16
1886 1972 6.312426 GTGAGTCTCATATCTTTGTGACAAGG 59.688 42.308 5.68 0.46 40.73 3.61
1887 1973 6.211384 TGAGTCTCATATCTTTGTGACAAGGA 59.789 38.462 12.58 12.58 40.73 3.36
1888 1974 7.093156 TGAGTCTCATATCTTTGTGACAAGGAT 60.093 37.037 23.38 23.38 40.73 3.24
1889 1975 8.311395 AGTCTCATATCTTTGTGACAAGGATA 57.689 34.615 25.63 25.63 40.73 2.59
1890 1976 8.762645 AGTCTCATATCTTTGTGACAAGGATAA 58.237 33.333 26.68 14.84 40.73 1.75
1891 1977 9.039870 GTCTCATATCTTTGTGACAAGGATAAG 57.960 37.037 26.68 23.19 39.03 1.73
1892 1978 7.712639 TCTCATATCTTTGTGACAAGGATAAGC 59.287 37.037 26.68 0.00 0.00 3.09
1893 1979 6.767902 TCATATCTTTGTGACAAGGATAAGCC 59.232 38.462 26.68 0.00 0.00 4.35
1905 1991 4.675063 AGGATAAGCCTCCTTTTCCAAA 57.325 40.909 13.03 0.00 46.97 3.28
1906 1992 5.010708 AGGATAAGCCTCCTTTTCCAAAA 57.989 39.130 13.03 0.00 46.97 2.44
1907 1993 5.402630 AGGATAAGCCTCCTTTTCCAAAAA 58.597 37.500 13.03 0.00 46.97 1.94
1933 2019 7.678947 AAAAGGTGAGTCTCATATCTTTGTG 57.321 36.000 19.93 0.00 30.54 3.33
1934 2020 6.611613 AAGGTGAGTCTCATATCTTTGTGA 57.388 37.500 5.68 0.00 0.00 3.58
1935 2021 5.971763 AGGTGAGTCTCATATCTTTGTGAC 58.028 41.667 5.68 0.00 39.33 3.67
1936 2022 5.481824 AGGTGAGTCTCATATCTTTGTGACA 59.518 40.000 5.68 0.00 40.73 3.58
1972 2058 5.691508 CAAGTGTTTGCTGAAACTGAAAG 57.308 39.130 0.00 0.00 41.87 2.62
1993 2079 8.366401 TGAAAGCACCATGAAGATTCATAAAAA 58.634 29.630 7.71 0.00 45.62 1.94
2018 2117 7.016361 ACTTATCCATGAAAAGATAACACGC 57.984 36.000 0.00 0.00 32.81 5.34
2022 2121 5.245531 TCCATGAAAAGATAACACGCTTCT 58.754 37.500 0.00 0.00 0.00 2.85
2061 2160 2.008329 CTCTGCATTGTCTCAAGAGGC 58.992 52.381 0.00 0.00 0.00 4.70
2126 2225 0.873312 ACAGATATCACGCGCTGCAG 60.873 55.000 10.11 10.11 31.74 4.41
2232 2332 3.430790 GGGTCAAATGGCCTATTCAAAGC 60.431 47.826 3.32 1.96 40.38 3.51
2322 2432 0.249531 TTACGCGTCTTGGTCTGCAA 60.250 50.000 18.63 0.00 0.00 4.08
2323 2433 0.037697 TACGCGTCTTGGTCTGCAAT 60.038 50.000 18.63 0.00 0.00 3.56
2324 2434 1.133253 CGCGTCTTGGTCTGCAATG 59.867 57.895 0.00 0.00 0.00 2.82
2325 2435 1.154150 GCGTCTTGGTCTGCAATGC 60.154 57.895 0.00 0.00 0.00 3.56
2326 2436 1.855213 GCGTCTTGGTCTGCAATGCA 61.855 55.000 7.99 7.99 36.92 3.96
2449 2559 0.947244 CTCACCGCATAAAGATGGCC 59.053 55.000 0.00 0.00 33.26 5.36
2451 2561 0.813610 CACCGCATAAAGATGGCCGA 60.814 55.000 0.00 0.00 33.26 5.54
2521 2631 1.429148 CGCGTAATCAAGGTGGCCTC 61.429 60.000 3.32 0.00 30.89 4.70
2539 2649 4.142790 GCCTCAGTACTAGCACCAGTATA 58.857 47.826 0.00 0.00 33.71 1.47
2581 2691 0.035820 GCCTCGGGTGTACAATGGAA 60.036 55.000 0.00 0.00 0.00 3.53
2582 2692 1.612199 GCCTCGGGTGTACAATGGAAA 60.612 52.381 0.00 0.00 0.00 3.13
2583 2693 2.785562 CCTCGGGTGTACAATGGAAAA 58.214 47.619 0.00 0.00 0.00 2.29
2584 2694 3.150767 CCTCGGGTGTACAATGGAAAAA 58.849 45.455 0.00 0.00 0.00 1.94
2746 2863 2.601666 TCAGCAGAGCCGGTCAGT 60.602 61.111 1.90 0.00 0.00 3.41
2795 2912 3.139077 GCCTATTCACTAATCAACCCGG 58.861 50.000 0.00 0.00 0.00 5.73
3577 6575 3.817647 GGAAGAAGAAGAACAGTGCACAT 59.182 43.478 21.04 3.29 0.00 3.21
3700 9411 3.165071 CTGTACAAAGGCAGGGGATTTT 58.835 45.455 0.00 0.00 0.00 1.82
3948 12658 2.743195 GCTTGAGCCTAGACACACG 58.257 57.895 0.00 0.00 34.31 4.49
4344 13886 2.166459 GAGTGTGTATGTAGCAGCAGGA 59.834 50.000 0.00 0.00 0.00 3.86
4439 13984 1.050988 TAGTGCTGGGCATCCTCCTC 61.051 60.000 0.00 0.00 41.91 3.71
5188 16700 2.483889 GGACTGCTGGTGCTATTACCTC 60.484 54.545 0.00 0.00 41.43 3.85
5220 16732 4.892934 AGGATGTGGTTCTGTTTTTAGCAA 59.107 37.500 0.00 0.00 0.00 3.91
5227 16739 8.851145 TGTGGTTCTGTTTTTAGCAATGTTATA 58.149 29.630 0.00 0.00 0.00 0.98
5229 16741 9.906660 TGGTTCTGTTTTTAGCAATGTTATAAG 57.093 29.630 0.00 0.00 0.00 1.73
5230 16742 9.908152 GGTTCTGTTTTTAGCAATGTTATAAGT 57.092 29.630 0.00 0.00 0.00 2.24
5256 16802 4.117685 GCGTAAAACTGGACTATCCGATT 58.882 43.478 0.00 0.00 40.17 3.34
5257 16803 4.569564 GCGTAAAACTGGACTATCCGATTT 59.430 41.667 0.00 0.00 40.17 2.17
5335 16885 5.189145 TGGAGGTACAGATTAAAGGAAGACC 59.811 44.000 0.00 0.00 0.00 3.85
5391 16941 3.631145 TTGAACAGCTTCAGTGATTGC 57.369 42.857 9.75 9.75 37.70 3.56
5420 16970 1.022735 CATCTCTGATGTTGGCAGCC 58.977 55.000 3.66 3.66 33.45 4.85
5448 16998 6.344500 AGCTTCTTTCTGACGACATAATGAT 58.656 36.000 0.00 0.00 0.00 2.45
5450 17000 6.256539 GCTTCTTTCTGACGACATAATGATCA 59.743 38.462 0.00 0.00 0.00 2.92
5459 17009 3.815401 CGACATAATGATCAAGGTTCCCC 59.185 47.826 0.00 0.00 0.00 4.81
5465 17015 3.611025 TGATCAAGGTTCCCCAAAACT 57.389 42.857 0.00 0.00 36.04 2.66
5478 17028 3.412386 CCCAAAACTGGAGTAGGTTGAG 58.588 50.000 0.00 0.00 36.16 3.02
5479 17029 2.814336 CCAAAACTGGAGTAGGTTGAGC 59.186 50.000 0.00 0.00 36.16 4.26
5484 17034 2.175202 CTGGAGTAGGTTGAGCTGTCT 58.825 52.381 0.00 0.00 0.00 3.41
5523 17082 4.373156 TGCTTAGCTTTTTCTCCTTCCT 57.627 40.909 5.60 0.00 0.00 3.36
5524 17083 4.074970 TGCTTAGCTTTTTCTCCTTCCTG 58.925 43.478 5.60 0.00 0.00 3.86
5582 17338 1.225376 CCTACGGTGTGCGCTTCAAA 61.225 55.000 9.73 0.00 0.00 2.69
5647 17407 7.342769 TCACCGTACATGAAGTATAGATTGT 57.657 36.000 0.00 0.00 34.67 2.71
5688 17453 9.482627 GATCTGTCCAATTTATTAGTAGGACTG 57.517 37.037 10.36 9.76 44.41 3.51
5689 17454 8.375493 TCTGTCCAATTTATTAGTAGGACTGT 57.625 34.615 10.36 0.00 44.41 3.55
5709 17474 8.202137 GGACTGTGCATTCTTTTAGTACCTATA 58.798 37.037 0.00 0.00 0.00 1.31
5737 17502 1.139058 GGTCCAGCCCATAGTGTACTG 59.861 57.143 0.00 0.00 0.00 2.74
5741 17506 4.101119 GTCCAGCCCATAGTGTACTGTATT 59.899 45.833 0.00 0.00 0.00 1.89
5742 17507 5.303589 GTCCAGCCCATAGTGTACTGTATTA 59.696 44.000 0.00 0.00 0.00 0.98
5743 17508 6.014499 GTCCAGCCCATAGTGTACTGTATTAT 60.014 42.308 0.00 0.00 0.00 1.28
5744 17509 7.177921 GTCCAGCCCATAGTGTACTGTATTATA 59.822 40.741 0.00 0.00 0.00 0.98
5762 17527 7.807907 TGTATTATATATATGCGCCAGTGATCG 59.192 37.037 4.18 0.00 0.00 3.69
5897 17745 6.814146 TGTATATCATTTACAGTTGTCACGCA 59.186 34.615 0.00 0.00 0.00 5.24
5972 17823 6.266103 TCCCTCCGTATCAAAATATAAGACGT 59.734 38.462 0.00 0.00 0.00 4.34
6068 17919 4.202357 GGTATTGATCTGACCATGGCACTA 60.202 45.833 13.04 0.00 33.16 2.74
6090 17941 4.094830 ACATGAGCATATGATCCTTGCA 57.905 40.909 17.90 0.05 38.84 4.08
6107 17958 0.108945 GCAAAACAGGCCTGCTCATC 60.109 55.000 33.06 15.31 33.20 2.92
6128 17979 1.645034 ATGGTGATTTCGAGACAGCG 58.355 50.000 11.06 0.00 35.25 5.18
6290 18150 0.319728 TGAGCTGCTGTCTCTGAACC 59.680 55.000 7.01 0.00 0.00 3.62
6703 18587 3.349022 CCCGACAAAGCAAAGGGTATAA 58.651 45.455 0.00 0.00 37.36 0.98
6704 18588 3.759618 CCCGACAAAGCAAAGGGTATAAA 59.240 43.478 0.00 0.00 37.36 1.40
6705 18589 4.401202 CCCGACAAAGCAAAGGGTATAAAT 59.599 41.667 0.00 0.00 37.36 1.40
6706 18590 5.591067 CCCGACAAAGCAAAGGGTATAAATA 59.409 40.000 0.00 0.00 37.36 1.40
6707 18591 6.459161 CCCGACAAAGCAAAGGGTATAAATAC 60.459 42.308 0.00 0.00 37.36 1.89
6708 18592 6.094325 CCGACAAAGCAAAGGGTATAAATACA 59.906 38.462 2.74 0.00 34.98 2.29
6709 18593 7.201785 CCGACAAAGCAAAGGGTATAAATACAT 60.202 37.037 2.74 0.00 34.98 2.29
6710 18594 8.832521 CGACAAAGCAAAGGGTATAAATACATA 58.167 33.333 2.74 0.00 34.98 2.29
6713 18597 9.744468 CAAAGCAAAGGGTATAAATACATAACC 57.256 33.333 2.74 0.00 38.37 2.85
6714 18598 9.482175 AAAGCAAAGGGTATAAATACATAACCA 57.518 29.630 2.74 0.00 40.25 3.67
6715 18599 9.654919 AAGCAAAGGGTATAAATACATAACCAT 57.345 29.630 2.74 0.00 40.25 3.55
6720 18604 9.734984 AAGGGTATAAATACATAACCATAGCAC 57.265 33.333 2.74 0.00 40.25 4.40
6721 18605 8.326529 AGGGTATAAATACATAACCATAGCACC 58.673 37.037 2.74 0.00 40.25 5.01
6722 18606 8.104566 GGGTATAAATACATAACCATAGCACCA 58.895 37.037 2.74 0.00 38.04 4.17
6744 18628 4.556135 CACAATGAAATTTCTGTAGCGCTG 59.444 41.667 22.90 2.88 31.22 5.18
6746 18630 3.811722 TGAAATTTCTGTAGCGCTGTG 57.188 42.857 22.90 10.03 0.00 3.66
6762 18646 3.438360 GCTGTGCATGCTTTTGGTATAC 58.562 45.455 20.33 5.64 0.00 1.47
6838 18722 0.524862 GCTCATTGTCCCTGCTTGTG 59.475 55.000 0.00 0.00 0.00 3.33
6890 18774 4.521146 ACATGGTGATCAATGGAGACTTC 58.479 43.478 11.22 0.00 0.00 3.01
7139 19023 2.022129 CACCCTGACGTTCACGCTC 61.022 63.158 0.00 0.00 44.43 5.03
7271 19513 3.335534 GTGAACTTCACGGCGCGT 61.336 61.111 6.90 0.00 42.36 6.01
7520 19769 3.408634 GAGGCCACTAGTTTTGTTAGCA 58.591 45.455 5.01 0.00 0.00 3.49
7521 19770 3.412386 AGGCCACTAGTTTTGTTAGCAG 58.588 45.455 5.01 0.00 0.00 4.24
7653 19902 1.476652 CCATGATGGGATTGCGTGGTA 60.477 52.381 2.79 0.00 34.70 3.25
7758 23055 7.849804 TGGCTTCTTGTCTGAATCTTATTAC 57.150 36.000 0.00 0.00 0.00 1.89
7768 23065 4.199310 TGAATCTTATTACCTGTGGCAGC 58.801 43.478 0.00 0.00 0.00 5.25
7774 23071 2.089887 TTACCTGTGGCAGCGACGAA 62.090 55.000 0.00 0.00 0.00 3.85
7779 23076 1.163420 TGTGGCAGCGACGAATTTGT 61.163 50.000 0.00 0.00 0.00 2.83
7789 23086 3.571571 CGACGAATTTGTAGTGACCAGA 58.428 45.455 0.00 0.00 0.00 3.86
7796 23093 7.138736 CGAATTTGTAGTGACCAGACAATTTT 58.861 34.615 0.00 0.00 33.33 1.82
7798 23095 9.394477 GAATTTGTAGTGACCAGACAATTTTAC 57.606 33.333 0.00 0.00 33.33 2.01
7803 23100 7.654520 TGTAGTGACCAGACAATTTTACTACAC 59.345 37.037 0.00 0.00 42.24 2.90
7815 23112 9.880157 ACAATTTTACTACACTACGTTATGGAT 57.120 29.630 0.00 0.00 0.00 3.41
7823 23120 9.444600 ACTACACTACGTTATGGATGAATTTTT 57.555 29.630 0.00 0.00 0.00 1.94
7843 23140 3.277142 TTTTTAGAAGGAGGATCGCCC 57.723 47.619 0.00 0.00 34.37 6.13
7844 23141 1.129058 TTTAGAAGGAGGATCGCCCC 58.871 55.000 0.00 0.00 34.37 5.80
7845 23142 0.264955 TTAGAAGGAGGATCGCCCCT 59.735 55.000 0.00 0.00 39.77 4.79
7846 23143 0.470080 TAGAAGGAGGATCGCCCCTG 60.470 60.000 0.00 0.00 36.49 4.45
7847 23144 2.770048 AAGGAGGATCGCCCCTGG 60.770 66.667 0.00 0.00 36.49 4.45
7848 23145 3.642741 AAGGAGGATCGCCCCTGGT 62.643 63.158 0.00 0.00 36.49 4.00
7849 23146 3.551407 GGAGGATCGCCCCTGGTC 61.551 72.222 0.00 0.00 36.49 4.02
7850 23147 2.444895 GAGGATCGCCCCTGGTCT 60.445 66.667 0.00 0.00 36.49 3.85
7851 23148 2.444895 AGGATCGCCCCTGGTCTC 60.445 66.667 0.00 0.00 34.68 3.36
7852 23149 2.444895 GGATCGCCCCTGGTCTCT 60.445 66.667 0.00 0.00 0.00 3.10
7853 23150 2.801631 GGATCGCCCCTGGTCTCTG 61.802 68.421 0.00 0.00 0.00 3.35
7854 23151 3.453070 GATCGCCCCTGGTCTCTGC 62.453 68.421 0.00 0.00 0.00 4.26
7856 23153 3.790437 CGCCCCTGGTCTCTGCAT 61.790 66.667 0.00 0.00 0.00 3.96
7857 23154 2.679716 GCCCCTGGTCTCTGCATT 59.320 61.111 0.00 0.00 0.00 3.56
7858 23155 1.915228 GCCCCTGGTCTCTGCATTA 59.085 57.895 0.00 0.00 0.00 1.90
7859 23156 0.475906 GCCCCTGGTCTCTGCATTAT 59.524 55.000 0.00 0.00 0.00 1.28
7860 23157 1.816961 GCCCCTGGTCTCTGCATTATG 60.817 57.143 0.00 0.00 0.00 1.90
7861 23158 1.202855 CCCCTGGTCTCTGCATTATGG 60.203 57.143 0.00 0.00 0.00 2.74
7862 23159 1.770658 CCCTGGTCTCTGCATTATGGA 59.229 52.381 0.00 0.00 0.00 3.41
7894 23191 5.455392 CCATGCATATTTTTCCAGTCGATC 58.545 41.667 0.00 0.00 0.00 3.69
7995 23292 4.480115 ACTCGATATCCTTGATGGGTACA 58.520 43.478 0.00 0.00 33.55 2.90
8114 23411 7.907389 TCTTAACTATGTCCTGAAACACTCAT 58.093 34.615 0.00 0.00 32.14 2.90
8130 23427 5.488341 ACACTCATAAGGTTAAGATTGCGT 58.512 37.500 0.00 0.00 0.00 5.24
8200 23497 4.332268 CAGCAAGCTGATCCTTAGAAGAAC 59.668 45.833 16.75 0.00 46.30 3.01
8208 23505 6.348868 GCTGATCCTTAGAAGAACCAAACTTG 60.349 42.308 0.00 0.00 0.00 3.16
8286 23583 0.454452 GCTTCGTTCGGGCATGAAAC 60.454 55.000 0.00 0.00 0.00 2.78
8291 23588 0.951558 GTTCGGGCATGAAACACTGT 59.048 50.000 0.00 0.00 0.00 3.55
8315 23612 2.308570 TGGATGAAAGGTATGTGGCACT 59.691 45.455 19.83 6.99 0.00 4.40
8341 23638 2.134789 ATCACATCAAAGGACAGGCC 57.865 50.000 0.00 0.00 0.00 5.19
8355 23652 1.992277 AGGCCGCTGAGTTGGAGAT 60.992 57.895 0.00 0.00 0.00 2.75
8415 23937 1.171308 CAGCTGTGGCATTAGCAACT 58.829 50.000 22.92 1.84 45.34 3.16
8433 23955 3.475566 ACTGCTTTGTACTCAGCTTCA 57.524 42.857 15.27 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.018149 ACCGTGCCTAAGTGTTTTGAAA 58.982 40.909 0.00 0.00 0.00 2.69
7 8 2.645802 ACCGTGCCTAAGTGTTTTGAA 58.354 42.857 0.00 0.00 0.00 2.69
8 9 2.335316 ACCGTGCCTAAGTGTTTTGA 57.665 45.000 0.00 0.00 0.00 2.69
9 10 2.873472 TGTACCGTGCCTAAGTGTTTTG 59.127 45.455 0.00 0.00 0.00 2.44
12 13 3.412237 AATGTACCGTGCCTAAGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
13 14 4.020839 AGTTAATGTACCGTGCCTAAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
14 15 4.501071 AGTTAATGTACCGTGCCTAAGTG 58.499 43.478 0.00 0.00 0.00 3.16
15 16 4.813750 AGTTAATGTACCGTGCCTAAGT 57.186 40.909 0.00 0.00 0.00 2.24
16 17 5.873164 AGAAAGTTAATGTACCGTGCCTAAG 59.127 40.000 0.00 0.00 0.00 2.18
17 18 5.797051 AGAAAGTTAATGTACCGTGCCTAA 58.203 37.500 0.00 0.00 0.00 2.69
18 19 5.410355 AGAAAGTTAATGTACCGTGCCTA 57.590 39.130 0.00 0.00 0.00 3.93
19 20 4.281898 AGAAAGTTAATGTACCGTGCCT 57.718 40.909 0.00 0.00 0.00 4.75
20 21 4.694037 AGAAGAAAGTTAATGTACCGTGCC 59.306 41.667 0.00 0.00 0.00 5.01
21 22 5.857822 AGAAGAAAGTTAATGTACCGTGC 57.142 39.130 0.00 0.00 0.00 5.34
22 23 7.636326 ACAAAGAAGAAAGTTAATGTACCGTG 58.364 34.615 0.00 0.00 0.00 4.94
23 24 7.797038 ACAAAGAAGAAAGTTAATGTACCGT 57.203 32.000 0.00 0.00 0.00 4.83
24 25 9.511144 AAAACAAAGAAGAAAGTTAATGTACCG 57.489 29.630 0.00 0.00 0.00 4.02
48 49 8.777865 TTGGTTGATATGTCACAAAACAAAAA 57.222 26.923 0.00 0.00 33.11 1.94
49 50 8.954950 ATTGGTTGATATGTCACAAAACAAAA 57.045 26.923 0.00 0.00 33.11 2.44
76 77 1.917787 ATGCCCGGCCCACATTTTT 60.918 52.632 7.03 0.00 0.00 1.94
77 78 2.284552 ATGCCCGGCCCACATTTT 60.285 55.556 7.03 0.00 0.00 1.82
78 79 3.076278 CATGCCCGGCCCACATTT 61.076 61.111 7.03 0.00 0.00 2.32
85 86 2.724273 AATGAAAGCATGCCCGGCC 61.724 57.895 15.66 0.00 34.26 6.13
86 87 1.519898 CAATGAAAGCATGCCCGGC 60.520 57.895 15.66 1.04 34.26 6.13
87 88 0.179129 GTCAATGAAAGCATGCCCGG 60.179 55.000 15.66 0.00 34.26 5.73
88 89 0.813184 AGTCAATGAAAGCATGCCCG 59.187 50.000 15.66 0.00 34.26 6.13
89 90 2.231964 TGAAGTCAATGAAAGCATGCCC 59.768 45.455 15.66 4.64 34.26 5.36
90 91 3.192001 TCTGAAGTCAATGAAAGCATGCC 59.808 43.478 15.66 0.00 34.26 4.40
91 92 4.430137 TCTGAAGTCAATGAAAGCATGC 57.570 40.909 10.51 10.51 34.26 4.06
92 93 6.971184 GGTAATCTGAAGTCAATGAAAGCATG 59.029 38.462 0.00 0.00 34.26 4.06
93 94 6.660521 TGGTAATCTGAAGTCAATGAAAGCAT 59.339 34.615 0.00 0.00 35.92 3.79
94 95 6.003326 TGGTAATCTGAAGTCAATGAAAGCA 58.997 36.000 0.00 0.00 0.00 3.91
95 96 6.500684 TGGTAATCTGAAGTCAATGAAAGC 57.499 37.500 0.00 0.00 0.00 3.51
96 97 8.352201 TGTTTGGTAATCTGAAGTCAATGAAAG 58.648 33.333 0.00 0.00 0.00 2.62
97 98 8.231692 TGTTTGGTAATCTGAAGTCAATGAAA 57.768 30.769 0.00 0.00 0.00 2.69
98 99 7.815840 TGTTTGGTAATCTGAAGTCAATGAA 57.184 32.000 0.00 0.00 0.00 2.57
99 100 7.665145 TCATGTTTGGTAATCTGAAGTCAATGA 59.335 33.333 0.00 0.00 0.00 2.57
100 101 7.752239 GTCATGTTTGGTAATCTGAAGTCAATG 59.248 37.037 0.00 0.00 0.00 2.82
101 102 7.448161 TGTCATGTTTGGTAATCTGAAGTCAAT 59.552 33.333 0.00 0.00 0.00 2.57
102 103 6.770303 TGTCATGTTTGGTAATCTGAAGTCAA 59.230 34.615 0.00 0.00 0.00 3.18
103 104 6.295249 TGTCATGTTTGGTAATCTGAAGTCA 58.705 36.000 0.00 0.00 0.00 3.41
104 105 6.801539 TGTCATGTTTGGTAATCTGAAGTC 57.198 37.500 0.00 0.00 0.00 3.01
105 106 7.882791 TGTATGTCATGTTTGGTAATCTGAAGT 59.117 33.333 0.00 0.00 0.00 3.01
106 107 8.267620 TGTATGTCATGTTTGGTAATCTGAAG 57.732 34.615 0.00 0.00 0.00 3.02
107 108 7.882791 ACTGTATGTCATGTTTGGTAATCTGAA 59.117 33.333 0.00 0.00 0.00 3.02
108 109 7.334171 CACTGTATGTCATGTTTGGTAATCTGA 59.666 37.037 0.00 0.00 0.00 3.27
109 110 7.414429 CCACTGTATGTCATGTTTGGTAATCTG 60.414 40.741 0.00 0.00 0.00 2.90
110 111 6.599244 CCACTGTATGTCATGTTTGGTAATCT 59.401 38.462 0.00 0.00 0.00 2.40
111 112 6.374333 ACCACTGTATGTCATGTTTGGTAATC 59.626 38.462 7.93 0.00 0.00 1.75
112 113 6.245408 ACCACTGTATGTCATGTTTGGTAAT 58.755 36.000 7.93 0.00 0.00 1.89
113 114 5.626142 ACCACTGTATGTCATGTTTGGTAA 58.374 37.500 7.93 0.00 0.00 2.85
114 115 5.235850 ACCACTGTATGTCATGTTTGGTA 57.764 39.130 7.93 0.00 0.00 3.25
115 116 4.098914 ACCACTGTATGTCATGTTTGGT 57.901 40.909 0.00 0.45 0.00 3.67
116 117 5.705441 ACTAACCACTGTATGTCATGTTTGG 59.295 40.000 0.00 0.00 0.00 3.28
117 118 6.801539 ACTAACCACTGTATGTCATGTTTG 57.198 37.500 0.00 0.00 0.00 2.93
118 119 6.995686 TGAACTAACCACTGTATGTCATGTTT 59.004 34.615 0.00 0.00 0.00 2.83
119 120 6.530120 TGAACTAACCACTGTATGTCATGTT 58.470 36.000 0.00 0.00 0.00 2.71
120 121 6.109156 TGAACTAACCACTGTATGTCATGT 57.891 37.500 0.00 0.00 0.00 3.21
121 122 7.615582 AATGAACTAACCACTGTATGTCATG 57.384 36.000 0.00 0.00 0.00 3.07
122 123 8.318412 TGTAATGAACTAACCACTGTATGTCAT 58.682 33.333 0.00 0.00 0.00 3.06
123 124 7.672240 TGTAATGAACTAACCACTGTATGTCA 58.328 34.615 0.00 0.00 0.00 3.58
124 125 8.718102 ATGTAATGAACTAACCACTGTATGTC 57.282 34.615 0.00 0.00 0.00 3.06
183 184 1.605232 GGCGGAGAGGAAAACGAAAAA 59.395 47.619 0.00 0.00 0.00 1.94
184 185 1.202722 AGGCGGAGAGGAAAACGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
185 186 0.395312 AGGCGGAGAGGAAAACGAAA 59.605 50.000 0.00 0.00 0.00 3.46
186 187 0.395312 AAGGCGGAGAGGAAAACGAA 59.605 50.000 0.00 0.00 0.00 3.85
187 188 1.203994 CTAAGGCGGAGAGGAAAACGA 59.796 52.381 0.00 0.00 0.00 3.85
188 189 1.067071 ACTAAGGCGGAGAGGAAAACG 60.067 52.381 0.00 0.00 0.00 3.60
189 190 2.619147 GACTAAGGCGGAGAGGAAAAC 58.381 52.381 0.00 0.00 0.00 2.43
190 191 1.203994 CGACTAAGGCGGAGAGGAAAA 59.796 52.381 0.00 0.00 0.00 2.29
191 192 0.815734 CGACTAAGGCGGAGAGGAAA 59.184 55.000 0.00 0.00 0.00 3.13
192 193 1.664321 GCGACTAAGGCGGAGAGGAA 61.664 60.000 0.00 0.00 0.00 3.36
193 194 2.119655 GCGACTAAGGCGGAGAGGA 61.120 63.158 0.00 0.00 0.00 3.71
194 195 2.413765 GCGACTAAGGCGGAGAGG 59.586 66.667 0.00 0.00 0.00 3.69
201 202 3.488090 GTGCACCGCGACTAAGGC 61.488 66.667 8.23 1.88 0.00 4.35
202 203 1.666553 TTGTGCACCGCGACTAAGG 60.667 57.895 15.69 0.00 0.00 2.69
203 204 1.491563 GTTGTGCACCGCGACTAAG 59.508 57.895 15.69 0.00 0.00 2.18
204 205 2.304401 CGTTGTGCACCGCGACTAA 61.304 57.895 20.72 2.12 0.00 2.24
205 206 2.127634 TACGTTGTGCACCGCGACTA 62.128 55.000 28.44 13.93 0.00 2.59
206 207 2.957484 TTACGTTGTGCACCGCGACT 62.957 55.000 28.44 14.74 0.00 4.18
207 208 2.474842 CTTACGTTGTGCACCGCGAC 62.475 60.000 28.44 15.48 0.00 5.19
208 209 2.279318 TTACGTTGTGCACCGCGA 60.279 55.556 28.44 14.33 0.00 5.87
209 210 1.623081 ATCTTACGTTGTGCACCGCG 61.623 55.000 22.71 22.71 0.00 6.46
210 211 0.179225 CATCTTACGTTGTGCACCGC 60.179 55.000 15.69 6.01 0.00 5.68
211 212 1.126113 GTCATCTTACGTTGTGCACCG 59.874 52.381 15.69 14.17 0.00 4.94
212 213 2.413837 AGTCATCTTACGTTGTGCACC 58.586 47.619 15.69 0.00 0.00 5.01
213 214 4.942765 GTAAGTCATCTTACGTTGTGCAC 58.057 43.478 10.75 10.75 43.95 4.57
221 222 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
222 223 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
223 224 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
224 225 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
225 226 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
226 227 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
227 228 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
228 229 3.144657 TCCGTCTAGGTGTGTAAGTCA 57.855 47.619 0.00 0.00 41.99 3.41
229 230 3.669023 CGTTCCGTCTAGGTGTGTAAGTC 60.669 52.174 0.00 0.00 41.99 3.01
230 231 2.227388 CGTTCCGTCTAGGTGTGTAAGT 59.773 50.000 0.00 0.00 41.99 2.24
231 232 2.485426 TCGTTCCGTCTAGGTGTGTAAG 59.515 50.000 0.00 0.00 41.99 2.34
232 233 2.485426 CTCGTTCCGTCTAGGTGTGTAA 59.515 50.000 0.00 0.00 41.99 2.41
233 234 2.079158 CTCGTTCCGTCTAGGTGTGTA 58.921 52.381 0.00 0.00 41.99 2.90
234 235 0.879765 CTCGTTCCGTCTAGGTGTGT 59.120 55.000 0.00 0.00 41.99 3.72
235 236 0.879765 ACTCGTTCCGTCTAGGTGTG 59.120 55.000 0.00 0.00 41.99 3.82
236 237 2.027745 TCTACTCGTTCCGTCTAGGTGT 60.028 50.000 0.00 0.00 41.99 4.16
237 238 2.625737 TCTACTCGTTCCGTCTAGGTG 58.374 52.381 0.00 0.00 41.99 4.00
238 239 3.340814 TTCTACTCGTTCCGTCTAGGT 57.659 47.619 0.00 0.00 41.99 3.08
239 240 4.897025 ATTTCTACTCGTTCCGTCTAGG 57.103 45.455 0.00 0.00 42.97 3.02
240 241 7.044183 GCTTTTATTTCTACTCGTTCCGTCTAG 60.044 40.741 0.00 0.00 0.00 2.43
241 242 6.749118 GCTTTTATTTCTACTCGTTCCGTCTA 59.251 38.462 0.00 0.00 0.00 2.59
242 243 5.575995 GCTTTTATTTCTACTCGTTCCGTCT 59.424 40.000 0.00 0.00 0.00 4.18
243 244 5.346822 TGCTTTTATTTCTACTCGTTCCGTC 59.653 40.000 0.00 0.00 0.00 4.79
244 245 5.232463 TGCTTTTATTTCTACTCGTTCCGT 58.768 37.500 0.00 0.00 0.00 4.69
245 246 5.773239 TGCTTTTATTTCTACTCGTTCCG 57.227 39.130 0.00 0.00 0.00 4.30
246 247 7.803724 TCTTTGCTTTTATTTCTACTCGTTCC 58.196 34.615 0.00 0.00 0.00 3.62
247 248 9.659830 TTTCTTTGCTTTTATTTCTACTCGTTC 57.340 29.630 0.00 0.00 0.00 3.95
248 249 9.447040 GTTTCTTTGCTTTTATTTCTACTCGTT 57.553 29.630 0.00 0.00 0.00 3.85
249 250 8.837389 AGTTTCTTTGCTTTTATTTCTACTCGT 58.163 29.630 0.00 0.00 0.00 4.18
250 251 9.107367 CAGTTTCTTTGCTTTTATTTCTACTCG 57.893 33.333 0.00 0.00 0.00 4.18
258 259 6.918022 CCGTCTTCAGTTTCTTTGCTTTTATT 59.082 34.615 0.00 0.00 0.00 1.40
282 283 4.040217 AGTGGAATCATGAGCATAGAGTCC 59.960 45.833 15.76 15.76 44.42 3.85
322 323 1.519751 TAACCAACATGCCGTGTGCC 61.520 55.000 0.00 0.00 41.14 5.01
323 324 0.525761 ATAACCAACATGCCGTGTGC 59.474 50.000 0.00 0.00 41.14 4.57
324 325 1.202020 CGATAACCAACATGCCGTGTG 60.202 52.381 0.00 0.00 41.14 3.82
325 326 1.083489 CGATAACCAACATGCCGTGT 58.917 50.000 0.00 0.00 44.84 4.49
326 327 1.083489 ACGATAACCAACATGCCGTG 58.917 50.000 0.00 0.00 0.00 4.94
327 328 1.083489 CACGATAACCAACATGCCGT 58.917 50.000 0.00 0.00 0.00 5.68
328 329 1.083489 ACACGATAACCAACATGCCG 58.917 50.000 0.00 0.00 0.00 5.69
329 330 2.080693 TCACACGATAACCAACATGCC 58.919 47.619 0.00 0.00 0.00 4.40
346 347 1.151668 GTCACTGCATGTGGAGTCAC 58.848 55.000 4.07 0.00 45.13 3.67
354 355 0.248565 ATCTGCTCGTCACTGCATGT 59.751 50.000 0.00 0.00 38.59 3.21
365 366 4.582701 AGATGGAAGTCTAATCTGCTCG 57.417 45.455 0.00 0.00 29.52 5.03
425 427 4.717233 ATATCATTAGCGAGAGGAGCTG 57.283 45.455 0.00 0.00 45.60 4.24
443 445 6.207025 GGTGAGGTCATGTTCGAGTACTATAT 59.793 42.308 0.00 0.00 0.00 0.86
444 446 5.530171 GGTGAGGTCATGTTCGAGTACTATA 59.470 44.000 0.00 0.00 0.00 1.31
533 535 6.963049 ACAGTACTATTTTCTTGCGGTAAG 57.037 37.500 0.00 0.00 37.76 2.34
551 553 3.377485 GCTACAGTGCTGCTAGTACAGTA 59.623 47.826 0.00 7.78 39.96 2.74
552 554 2.164624 GCTACAGTGCTGCTAGTACAGT 59.835 50.000 0.00 7.18 39.96 3.55
553 555 2.792890 CGCTACAGTGCTGCTAGTACAG 60.793 54.545 0.00 0.00 40.80 2.74
579 588 0.594796 GAGCACCCAAAACAACTGCG 60.595 55.000 0.00 0.00 32.92 5.18
585 594 1.403679 CTTTGTCGAGCACCCAAAACA 59.596 47.619 0.00 0.00 0.00 2.83
655 668 7.412853 GTGAGAAATGTGGCAATAGTCAATAG 58.587 38.462 0.00 0.00 0.00 1.73
826 861 1.675415 CCAAGAGACTCTGCTTCTGCC 60.675 57.143 5.55 0.00 38.71 4.85
830 865 1.724429 CAGCCAAGAGACTCTGCTTC 58.276 55.000 13.26 1.43 0.00 3.86
864 899 0.909610 AAGCTGACGAAGATGGGGGA 60.910 55.000 0.00 0.00 0.00 4.81
870 905 2.935201 GAGATTGCAAGCTGACGAAGAT 59.065 45.455 24.07 0.00 0.00 2.40
923 959 3.491342 CTCGATATGGAGAAGAGTGGGA 58.509 50.000 8.98 0.00 36.08 4.37
935 971 1.687123 ACCCTTTCGTCCTCGATATGG 59.313 52.381 0.00 0.00 45.65 2.74
938 974 2.022195 CTCACCCTTTCGTCCTCGATA 58.978 52.381 0.00 0.00 45.65 2.92
957 993 4.423209 GTCCCCCAGCTCCCTCCT 62.423 72.222 0.00 0.00 0.00 3.69
958 994 2.956077 CTAGTCCCCCAGCTCCCTCC 62.956 70.000 0.00 0.00 0.00 4.30
967 1003 1.756950 CGTAGCAGCTAGTCCCCCA 60.757 63.158 1.02 0.00 0.00 4.96
984 1029 2.203422 ATCTCCTCCTCCTCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
987 1032 0.831711 GCTCCATCTCCTCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
988 1033 1.178534 CGCTCCATCTCCTCCTCCTC 61.179 65.000 0.00 0.00 0.00 3.71
989 1034 1.152567 CGCTCCATCTCCTCCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
1101 1149 1.920835 AGAAAGGGGCGGAAGAGCT 60.921 57.895 0.00 0.00 37.29 4.09
1145 1193 4.285863 ACTACAGAGGAGAGCAAAGCTAT 58.714 43.478 0.00 0.00 39.88 2.97
1146 1194 3.697045 GACTACAGAGGAGAGCAAAGCTA 59.303 47.826 0.00 0.00 39.88 3.32
1147 1195 2.495669 GACTACAGAGGAGAGCAAAGCT 59.504 50.000 0.00 0.00 43.88 3.74
1148 1196 2.495669 AGACTACAGAGGAGAGCAAAGC 59.504 50.000 0.00 0.00 0.00 3.51
1149 1197 3.675775 GCAGACTACAGAGGAGAGCAAAG 60.676 52.174 0.00 0.00 0.00 2.77
1150 1198 2.232452 GCAGACTACAGAGGAGAGCAAA 59.768 50.000 0.00 0.00 0.00 3.68
1161 1219 2.445565 TGAGCAGTTGCAGACTACAG 57.554 50.000 6.90 0.00 45.16 2.74
1163 1221 3.186119 GAGATGAGCAGTTGCAGACTAC 58.814 50.000 6.90 0.00 45.16 2.73
1165 1223 1.622312 TGAGATGAGCAGTTGCAGACT 59.378 47.619 6.90 0.50 45.16 3.24
1182 1240 2.025359 GACGGCCGAAATCGCTTGAG 62.025 60.000 35.90 0.00 38.18 3.02
1205 1263 1.537348 CGCCAGCTAAATACCGCACTA 60.537 52.381 0.00 0.00 0.00 2.74
1255 1313 1.382146 AATGCTCCAAGGCCCATGG 60.382 57.895 17.33 17.33 39.41 3.66
1275 1333 6.839124 AAAATCTGTGATTCCTAATGCACA 57.161 33.333 0.00 0.00 38.78 4.57
1316 1375 0.693049 ACCCACTCATTCCTCACCAC 59.307 55.000 0.00 0.00 0.00 4.16
1413 1472 1.448717 GCTCGCCTTTCAGGACTCC 60.449 63.158 0.00 0.00 37.67 3.85
1448 1511 7.116376 CGGACCGTATTCGAAACTAGTACTATA 59.884 40.741 5.48 0.00 39.71 1.31
1454 1517 2.749621 ACGGACCGTATTCGAAACTAGT 59.250 45.455 20.23 0.00 38.73 2.57
1455 1518 3.103738 CACGGACCGTATTCGAAACTAG 58.896 50.000 21.25 0.00 38.32 2.57
1456 1519 2.731968 GCACGGACCGTATTCGAAACTA 60.732 50.000 21.25 0.00 38.32 2.24
1457 1520 1.986698 CACGGACCGTATTCGAAACT 58.013 50.000 21.25 0.00 38.32 2.66
1458 1521 0.367887 GCACGGACCGTATTCGAAAC 59.632 55.000 21.25 1.12 38.32 2.78
1459 1522 1.072116 CGCACGGACCGTATTCGAAA 61.072 55.000 21.25 0.00 38.32 3.46
1463 1526 3.613702 CGCGCACGGACCGTATTC 61.614 66.667 21.25 10.88 38.32 1.75
1509 1583 4.552184 GCTAGCGTTTCACGTTTTCTTCTT 60.552 41.667 0.00 0.00 44.73 2.52
1546 1620 5.218885 TGATAACAAGACATGGCAAAAACG 58.781 37.500 0.00 0.00 0.00 3.60
1547 1621 5.119125 GCTGATAACAAGACATGGCAAAAAC 59.881 40.000 0.00 0.00 0.00 2.43
1552 1626 3.054875 AGAGCTGATAACAAGACATGGCA 60.055 43.478 0.00 0.00 0.00 4.92
1554 1628 4.763073 TCAGAGCTGATAACAAGACATGG 58.237 43.478 0.00 0.00 34.14 3.66
1561 1635 3.244526 TGGCTGTTCAGAGCTGATAACAA 60.245 43.478 0.37 0.00 39.64 2.83
1578 1652 0.104487 TGGCACACATTGTTTGGCTG 59.896 50.000 24.34 0.34 39.11 4.85
1588 1662 2.436109 GGGGACACTGGCACACAT 59.564 61.111 0.00 0.00 0.00 3.21
1591 1665 3.936203 GACGGGGACACTGGCACA 61.936 66.667 0.00 0.00 31.88 4.57
1592 1666 3.178540 AAGACGGGGACACTGGCAC 62.179 63.158 0.00 0.00 35.16 5.01
1593 1667 2.847234 AAGACGGGGACACTGGCA 60.847 61.111 0.00 0.00 35.16 4.92
1594 1668 2.358737 CAAGACGGGGACACTGGC 60.359 66.667 0.00 0.00 0.00 4.85
1595 1669 2.358737 GCAAGACGGGGACACTGG 60.359 66.667 0.00 0.00 0.00 4.00
1596 1670 2.738521 CGCAAGACGGGGACACTG 60.739 66.667 0.00 0.00 43.02 3.66
1597 1671 4.681978 GCGCAAGACGGGGACACT 62.682 66.667 0.30 0.00 43.93 3.55
1621 1695 3.525537 ACATAGCGACAGTGGATGAAAG 58.474 45.455 0.00 0.00 0.00 2.62
1680 1757 4.097892 CAGGAGGTGTTGTTAAGCAAAGTT 59.902 41.667 0.00 0.00 39.03 2.66
1683 1760 2.360801 GCAGGAGGTGTTGTTAAGCAAA 59.639 45.455 0.00 0.00 39.03 3.68
1688 1769 3.118038 ACTGAAGCAGGAGGTGTTGTTAA 60.118 43.478 0.00 0.00 35.51 2.01
1692 1773 1.605710 CAACTGAAGCAGGAGGTGTTG 59.394 52.381 0.00 0.00 35.51 3.33
1817 1903 8.861101 CGGTCATTTACAAACAAACAAAAACTA 58.139 29.630 0.00 0.00 0.00 2.24
1828 1914 4.701171 GGGGTTATCGGTCATTTACAAACA 59.299 41.667 0.00 0.00 0.00 2.83
1834 1920 2.158726 GCTGGGGGTTATCGGTCATTTA 60.159 50.000 0.00 0.00 0.00 1.40
1885 1971 5.738619 TTTTTGGAAAAGGAGGCTTATCC 57.261 39.130 0.00 0.00 39.89 2.59
1908 1994 7.939039 TCACAAAGATATGAGACTCACCTTTTT 59.061 33.333 18.86 13.70 0.00 1.94
1909 1995 7.389053 GTCACAAAGATATGAGACTCACCTTTT 59.611 37.037 18.86 11.08 37.75 2.27
1910 1996 6.876257 GTCACAAAGATATGAGACTCACCTTT 59.124 38.462 7.47 13.84 37.75 3.11
1911 1997 6.014242 TGTCACAAAGATATGAGACTCACCTT 60.014 38.462 7.47 8.78 40.29 3.50
1912 1998 5.481824 TGTCACAAAGATATGAGACTCACCT 59.518 40.000 7.47 2.75 40.29 4.00
1913 1999 5.724328 TGTCACAAAGATATGAGACTCACC 58.276 41.667 7.47 0.28 40.29 4.02
1914 2000 6.312426 CCTTGTCACAAAGATATGAGACTCAC 59.688 42.308 7.47 0.00 40.29 3.51
1915 2001 6.211384 TCCTTGTCACAAAGATATGAGACTCA 59.789 38.462 7.80 7.80 40.29 3.41
1916 2002 6.634805 TCCTTGTCACAAAGATATGAGACTC 58.365 40.000 0.00 0.00 40.29 3.36
1917 2003 6.611613 TCCTTGTCACAAAGATATGAGACT 57.388 37.500 0.00 0.00 40.29 3.24
1918 2004 6.820656 ACATCCTTGTCACAAAGATATGAGAC 59.179 38.462 1.12 0.00 40.13 3.36
1919 2005 6.950842 ACATCCTTGTCACAAAGATATGAGA 58.049 36.000 1.12 0.00 30.80 3.27
1920 2006 7.551974 AGAACATCCTTGTCACAAAGATATGAG 59.448 37.037 1.12 0.00 34.06 2.90
1921 2007 7.335171 CAGAACATCCTTGTCACAAAGATATGA 59.665 37.037 1.12 0.00 34.06 2.15
1922 2008 7.120285 ACAGAACATCCTTGTCACAAAGATATG 59.880 37.037 1.12 1.32 34.06 1.78
1923 2009 7.120285 CACAGAACATCCTTGTCACAAAGATAT 59.880 37.037 1.12 0.00 34.06 1.63
1924 2010 6.427853 CACAGAACATCCTTGTCACAAAGATA 59.572 38.462 1.12 0.00 34.06 1.98
1925 2011 5.240183 CACAGAACATCCTTGTCACAAAGAT 59.760 40.000 0.00 0.00 34.06 2.40
1926 2012 4.576053 CACAGAACATCCTTGTCACAAAGA 59.424 41.667 0.00 0.00 34.06 2.52
1927 2013 4.790766 GCACAGAACATCCTTGTCACAAAG 60.791 45.833 0.00 0.00 34.06 2.77
1928 2014 3.066621 GCACAGAACATCCTTGTCACAAA 59.933 43.478 0.00 0.00 34.06 2.83
1929 2015 2.618241 GCACAGAACATCCTTGTCACAA 59.382 45.455 0.00 0.00 34.06 3.33
1930 2016 2.221169 GCACAGAACATCCTTGTCACA 58.779 47.619 0.00 0.00 34.06 3.58
1931 2017 2.221169 TGCACAGAACATCCTTGTCAC 58.779 47.619 0.00 0.00 34.06 3.67
1932 2018 2.636647 TGCACAGAACATCCTTGTCA 57.363 45.000 0.00 0.00 34.06 3.58
1933 2019 2.880890 ACTTGCACAGAACATCCTTGTC 59.119 45.455 0.00 0.00 34.06 3.18
1934 2020 2.620115 CACTTGCACAGAACATCCTTGT 59.380 45.455 0.00 0.00 37.82 3.16
1935 2021 2.620115 ACACTTGCACAGAACATCCTTG 59.380 45.455 0.00 0.00 0.00 3.61
1936 2022 2.936202 ACACTTGCACAGAACATCCTT 58.064 42.857 0.00 0.00 0.00 3.36
1993 2079 7.336931 AGCGTGTTATCTTTTCATGGATAAGTT 59.663 33.333 0.00 0.00 35.80 2.66
1994 2080 6.823689 AGCGTGTTATCTTTTCATGGATAAGT 59.176 34.615 0.00 0.00 35.80 2.24
1995 2081 7.251704 AGCGTGTTATCTTTTCATGGATAAG 57.748 36.000 0.00 0.00 35.80 1.73
2005 2104 7.681939 TTATGGAAGAAGCGTGTTATCTTTT 57.318 32.000 0.00 0.00 33.73 2.27
2035 2134 5.554070 TCTTGAGACAATGCAGAGAAATGA 58.446 37.500 0.00 0.00 0.00 2.57
2041 2140 2.008329 GCCTCTTGAGACAATGCAGAG 58.992 52.381 0.00 0.00 0.00 3.35
2042 2141 1.627329 AGCCTCTTGAGACAATGCAGA 59.373 47.619 0.00 0.00 0.00 4.26
2061 2160 4.103357 CACAGTAATAAAGGTCGACGGAG 58.897 47.826 9.92 0.00 0.00 4.63
2145 2244 2.210013 TGCTGCTCCGTCTGGAACT 61.210 57.895 0.00 0.00 45.87 3.01
2146 2245 2.029844 GTGCTGCTCCGTCTGGAAC 61.030 63.158 0.00 0.00 45.87 3.62
2147 2246 2.343758 GTGCTGCTCCGTCTGGAA 59.656 61.111 0.00 0.00 45.87 3.53
2148 2247 2.917227 TGTGCTGCTCCGTCTGGA 60.917 61.111 0.00 0.00 43.88 3.86
2149 2248 2.433838 CTGTGCTGCTCCGTCTGG 60.434 66.667 0.00 0.00 0.00 3.86
2150 2249 3.117171 GCTGTGCTGCTCCGTCTG 61.117 66.667 0.00 0.00 0.00 3.51
2151 2250 3.586461 CTGCTGTGCTGCTCCGTCT 62.586 63.158 0.00 0.00 0.00 4.18
2152 2251 3.117171 CTGCTGTGCTGCTCCGTC 61.117 66.667 0.00 0.00 0.00 4.79
2282 2389 1.069775 TTTGGGGAGGTGAAGGTACC 58.930 55.000 2.73 2.73 41.17 3.34
2324 2434 3.589881 CCTAGGGCAGCGCAATGC 61.590 66.667 11.47 12.28 45.74 3.56
2325 2435 2.124570 ACCTAGGGCAGCGCAATG 60.125 61.111 14.81 0.00 0.00 2.82
2326 2436 2.190578 GACCTAGGGCAGCGCAAT 59.809 61.111 10.77 0.00 0.00 3.56
2376 2486 3.822167 TCGACCATAGCAATATCGTGGTA 59.178 43.478 0.00 0.00 42.87 3.25
2386 2496 0.317160 CGGCCTATCGACCATAGCAA 59.683 55.000 0.00 0.00 34.06 3.91
2451 2561 1.004560 CCATGTGAGTGACCACGCT 60.005 57.895 5.56 0.00 39.80 5.07
2521 2631 8.149647 AGTACTACTATACTGGTGCTAGTACTG 58.850 40.741 10.95 6.90 43.93 2.74
2539 2649 2.848678 TCATGGGAGGCAGTACTACT 57.151 50.000 0.00 0.00 0.00 2.57
2581 2691 6.889722 TGCTGGTGCTATTACCTCTAATTTTT 59.110 34.615 0.00 0.00 41.43 1.94
2582 2692 6.423182 TGCTGGTGCTATTACCTCTAATTTT 58.577 36.000 0.00 0.00 41.43 1.82
2583 2693 6.001449 TGCTGGTGCTATTACCTCTAATTT 57.999 37.500 0.00 0.00 41.43 1.82
2584 2694 5.131142 ACTGCTGGTGCTATTACCTCTAATT 59.869 40.000 0.00 0.00 41.43 1.40
2585 2695 4.656112 ACTGCTGGTGCTATTACCTCTAAT 59.344 41.667 0.00 0.00 41.43 1.73
2795 2912 3.748021 GCAAAAGTGCGGTGTAGTC 57.252 52.632 0.00 0.00 41.93 2.59
3948 12658 2.474266 CGTGTGTGTGCCGCATAC 59.526 61.111 12.96 12.96 39.31 2.39
4344 13886 5.036916 TGGTGGGTAGTTATCCTCAAGAAT 58.963 41.667 0.00 0.00 0.00 2.40
4439 13984 5.738370 CAGGAAGAAACAAACGAGTTACAG 58.262 41.667 0.00 0.00 0.00 2.74
5220 16732 7.604927 TCCAGTTTTACGCAAGACTTATAACAT 59.395 33.333 0.00 0.00 43.62 2.71
5227 16739 3.805207 AGTCCAGTTTTACGCAAGACTT 58.195 40.909 0.00 0.00 43.62 3.01
5229 16741 4.329256 GGATAGTCCAGTTTTACGCAAGAC 59.671 45.833 0.00 0.00 37.35 3.01
5230 16742 4.501071 GGATAGTCCAGTTTTACGCAAGA 58.499 43.478 0.00 0.00 37.35 3.02
5231 16743 3.306166 CGGATAGTCCAGTTTTACGCAAG 59.694 47.826 0.00 0.00 35.91 4.01
5232 16744 3.056678 TCGGATAGTCCAGTTTTACGCAA 60.057 43.478 0.00 0.00 35.91 4.85
5335 16885 6.871844 TCACTCTGTGATTCAGGAGAATTAG 58.128 40.000 17.95 2.56 44.30 1.73
5349 16899 5.808366 AATACTTGGTCTTCACTCTGTGA 57.192 39.130 0.00 0.00 41.09 3.58
5391 16941 5.332707 CAACATCAGAGATGTGCAGAAATG 58.667 41.667 12.86 3.04 31.80 2.32
5406 16956 1.376543 CTAGTGGCTGCCAACATCAG 58.623 55.000 25.23 11.87 34.18 2.90
5420 16970 3.902150 TGTCGTCAGAAAGAAGCTAGTG 58.098 45.455 0.00 0.00 0.00 2.74
5459 17009 3.499918 CAGCTCAACCTACTCCAGTTTTG 59.500 47.826 0.00 0.00 0.00 2.44
5465 17015 2.300152 CAAGACAGCTCAACCTACTCCA 59.700 50.000 0.00 0.00 0.00 3.86
5478 17028 3.244033 ACTACTGATGAGCAAGACAGC 57.756 47.619 0.00 0.00 34.25 4.40
5479 17029 6.369005 CAAAAACTACTGATGAGCAAGACAG 58.631 40.000 0.00 0.00 36.58 3.51
5484 17034 5.772825 AAGCAAAAACTACTGATGAGCAA 57.227 34.783 0.00 0.00 0.00 3.91
5494 17044 7.426410 AGGAGAAAAAGCTAAGCAAAAACTAC 58.574 34.615 0.00 0.00 0.00 2.73
5582 17338 9.444600 TCACACTAGAGTAAAGAGTTTTGTTTT 57.555 29.630 0.00 0.00 0.00 2.43
5586 17342 7.306866 GCAGTCACACTAGAGTAAAGAGTTTTG 60.307 40.741 0.00 0.00 0.00 2.44
5591 17347 5.414454 AGAGCAGTCACACTAGAGTAAAGAG 59.586 44.000 0.00 0.00 0.00 2.85
5647 17407 9.739276 ATTGGACAGATCTGATAAGTAAAAACA 57.261 29.630 29.27 7.69 0.00 2.83
5737 17502 8.021396 TCGATCACTGGCGCATATATATAATAC 58.979 37.037 10.83 0.00 0.00 1.89
5741 17506 6.385649 TTCGATCACTGGCGCATATATATA 57.614 37.500 10.83 0.00 0.00 0.86
5742 17507 4.918810 TCGATCACTGGCGCATATATAT 57.081 40.909 10.83 0.00 0.00 0.86
5743 17508 4.712122 TTCGATCACTGGCGCATATATA 57.288 40.909 10.83 0.00 0.00 0.86
5744 17509 3.592898 TTCGATCACTGGCGCATATAT 57.407 42.857 10.83 0.00 0.00 0.86
5762 17527 9.877178 CTGTATAGGATGGACCATAGTAAATTC 57.123 37.037 7.05 0.00 42.04 2.17
5897 17745 7.588169 AGGAACCTCTACTGAATATGTACTCT 58.412 38.462 0.00 0.00 0.00 3.24
5941 17791 7.808279 ATATTTTGATACGGAGGGAGGATAA 57.192 36.000 0.00 0.00 0.00 1.75
5944 17794 7.014449 TCTTATATTTTGATACGGAGGGAGGA 58.986 38.462 0.00 0.00 0.00 3.71
5945 17795 7.097834 GTCTTATATTTTGATACGGAGGGAGG 58.902 42.308 0.00 0.00 0.00 4.30
6057 17908 1.004628 TGCTCATGTTAGTGCCATGGT 59.995 47.619 14.67 0.00 40.07 3.55
6068 17919 4.466827 TGCAAGGATCATATGCTCATGTT 58.533 39.130 14.95 0.00 40.66 2.71
6090 17941 1.999648 TTGATGAGCAGGCCTGTTTT 58.000 45.000 32.81 18.90 0.00 2.43
6107 17958 2.222886 CGCTGTCTCGAAATCACCATTG 60.223 50.000 0.00 0.00 0.00 2.82
6290 18150 5.872617 TGAACTCGGGTGTTAACTGATTATG 59.127 40.000 7.22 0.00 0.00 1.90
6507 18372 1.371267 CAAGTCGACGGTCTGCGAA 60.371 57.895 10.46 0.00 38.36 4.70
6576 18441 2.827642 GCCTGCTCATCCACTGCC 60.828 66.667 0.00 0.00 0.00 4.85
6703 18587 7.059788 TCATTGTGGTGCTATGGTTATGTATT 58.940 34.615 0.00 0.00 32.46 1.89
6704 18588 6.600388 TCATTGTGGTGCTATGGTTATGTAT 58.400 36.000 0.00 0.00 32.46 2.29
6705 18589 5.995446 TCATTGTGGTGCTATGGTTATGTA 58.005 37.500 0.00 0.00 32.46 2.29
6706 18590 4.854173 TCATTGTGGTGCTATGGTTATGT 58.146 39.130 0.00 0.00 32.46 2.29
6707 18591 5.833406 TTCATTGTGGTGCTATGGTTATG 57.167 39.130 0.00 0.00 32.46 1.90
6708 18592 7.422465 AATTTCATTGTGGTGCTATGGTTAT 57.578 32.000 0.00 0.00 32.46 1.89
6709 18593 6.849085 AATTTCATTGTGGTGCTATGGTTA 57.151 33.333 0.00 0.00 32.46 2.85
6710 18594 5.743636 AATTTCATTGTGGTGCTATGGTT 57.256 34.783 0.00 0.00 32.46 3.67
6711 18595 5.481473 AGAAATTTCATTGTGGTGCTATGGT 59.519 36.000 19.99 0.00 32.46 3.55
6712 18596 5.808540 CAGAAATTTCATTGTGGTGCTATGG 59.191 40.000 19.99 0.00 32.46 2.74
6713 18597 6.392354 ACAGAAATTTCATTGTGGTGCTATG 58.608 36.000 19.99 7.22 0.00 2.23
6714 18598 6.594788 ACAGAAATTTCATTGTGGTGCTAT 57.405 33.333 19.99 0.00 0.00 2.97
6715 18599 6.349280 GCTACAGAAATTTCATTGTGGTGCTA 60.349 38.462 19.99 0.73 0.00 3.49
6716 18600 4.942761 ACAGAAATTTCATTGTGGTGCT 57.057 36.364 19.99 0.00 0.00 4.40
6717 18601 4.622740 GCTACAGAAATTTCATTGTGGTGC 59.377 41.667 19.99 15.91 0.00 5.01
6718 18602 4.853196 CGCTACAGAAATTTCATTGTGGTG 59.147 41.667 19.99 18.30 0.00 4.17
6719 18603 4.615912 GCGCTACAGAAATTTCATTGTGGT 60.616 41.667 19.99 9.96 0.00 4.16
6720 18604 3.853671 GCGCTACAGAAATTTCATTGTGG 59.146 43.478 19.99 17.33 0.00 4.17
6721 18605 4.556135 CAGCGCTACAGAAATTTCATTGTG 59.444 41.667 19.99 14.55 0.00 3.33
6722 18606 4.216257 ACAGCGCTACAGAAATTTCATTGT 59.784 37.500 19.99 17.24 0.00 2.71
6744 18628 6.795399 ACATAAGTATACCAAAAGCATGCAC 58.205 36.000 21.98 5.64 0.00 4.57
6746 18630 9.965824 ATAAACATAAGTATACCAAAAGCATGC 57.034 29.630 10.51 10.51 0.00 4.06
6785 18669 7.356089 TCTAACCTGTGTAAAGTCTTTCTGA 57.644 36.000 0.00 0.00 0.00 3.27
6786 18670 7.711339 ACTTCTAACCTGTGTAAAGTCTTTCTG 59.289 37.037 0.00 0.00 0.00 3.02
6787 18671 7.711339 CACTTCTAACCTGTGTAAAGTCTTTCT 59.289 37.037 0.00 0.00 0.00 2.52
6788 18672 7.518529 GCACTTCTAACCTGTGTAAAGTCTTTC 60.519 40.741 0.00 0.00 34.52 2.62
6789 18673 6.260271 GCACTTCTAACCTGTGTAAAGTCTTT 59.740 38.462 2.81 2.81 34.52 2.52
6790 18674 5.758784 GCACTTCTAACCTGTGTAAAGTCTT 59.241 40.000 0.00 0.00 34.52 3.01
6792 18676 5.298347 AGCACTTCTAACCTGTGTAAAGTC 58.702 41.667 0.00 0.00 34.52 3.01
6802 18686 3.702792 TGAGCTAGAGCACTTCTAACCT 58.297 45.455 4.01 0.00 45.16 3.50
6838 18722 5.054390 TCAAAACAAAGACACCACAGAAC 57.946 39.130 0.00 0.00 0.00 3.01
6890 18774 2.851102 ATCCATGGCCCCTCCTCG 60.851 66.667 6.96 0.00 35.26 4.63
6920 18804 4.749310 AGCAGGACGCCGAAGCTG 62.749 66.667 0.00 0.00 44.04 4.24
7520 19769 2.972713 TCACAGAAACCTCAGGCTTACT 59.027 45.455 0.00 0.00 0.00 2.24
7521 19770 3.006967 TCTCACAGAAACCTCAGGCTTAC 59.993 47.826 0.00 0.00 0.00 2.34
7594 19843 4.241681 TCACACAAGAAAGCAACAAAACC 58.758 39.130 0.00 0.00 0.00 3.27
7653 19902 8.859090 TGGAACAATTCTTACATCTCACATTTT 58.141 29.630 0.00 0.00 31.92 1.82
7677 19943 5.578005 ATGCATTGAAGAGATGAAGTTGG 57.422 39.130 0.00 0.00 0.00 3.77
7758 23055 1.577328 AAATTCGTCGCTGCCACAGG 61.577 55.000 0.00 0.00 31.21 4.00
7768 23065 3.364023 GTCTGGTCACTACAAATTCGTCG 59.636 47.826 0.00 0.00 0.00 5.12
7774 23071 8.691661 AGTAAAATTGTCTGGTCACTACAAAT 57.308 30.769 0.00 0.00 36.75 2.32
7779 23076 7.959175 AGTGTAGTAAAATTGTCTGGTCACTA 58.041 34.615 0.00 0.00 31.09 2.74
7789 23086 9.880157 ATCCATAACGTAGTGTAGTAAAATTGT 57.120 29.630 0.00 0.00 45.00 2.71
7823 23120 2.092592 GGGGCGATCCTCCTTCTAAAAA 60.093 50.000 0.00 0.00 35.33 1.94
7824 23121 1.489230 GGGGCGATCCTCCTTCTAAAA 59.511 52.381 0.00 0.00 35.33 1.52
7825 23122 1.129058 GGGGCGATCCTCCTTCTAAA 58.871 55.000 0.00 0.00 35.33 1.85
7826 23123 0.264955 AGGGGCGATCCTCCTTCTAA 59.735 55.000 0.00 0.00 31.22 2.10
7827 23124 0.470080 CAGGGGCGATCCTCCTTCTA 60.470 60.000 0.14 0.00 34.31 2.10
7828 23125 1.764054 CAGGGGCGATCCTCCTTCT 60.764 63.158 0.14 0.00 34.31 2.85
7829 23126 2.812619 CCAGGGGCGATCCTCCTTC 61.813 68.421 0.14 0.00 34.31 3.46
7830 23127 2.770048 CCAGGGGCGATCCTCCTT 60.770 66.667 0.14 0.00 34.31 3.36
7831 23128 4.095400 ACCAGGGGCGATCCTCCT 62.095 66.667 0.00 0.00 34.31 3.69
7832 23129 3.551407 GACCAGGGGCGATCCTCC 61.551 72.222 0.00 0.00 34.31 4.30
7833 23130 2.444895 AGACCAGGGGCGATCCTC 60.445 66.667 0.00 0.00 34.31 3.71
7834 23131 2.444895 GAGACCAGGGGCGATCCT 60.445 66.667 0.00 0.00 37.71 3.24
7835 23132 2.444895 AGAGACCAGGGGCGATCC 60.445 66.667 0.00 0.00 0.00 3.36
7836 23133 2.818132 CAGAGACCAGGGGCGATC 59.182 66.667 0.00 0.00 0.00 3.69
7837 23134 3.474570 GCAGAGACCAGGGGCGAT 61.475 66.667 0.00 0.00 0.00 4.58
7839 23136 1.971505 TAATGCAGAGACCAGGGGCG 61.972 60.000 0.00 0.00 0.00 6.13
7840 23137 0.475906 ATAATGCAGAGACCAGGGGC 59.524 55.000 0.00 0.00 0.00 5.80
7841 23138 1.202855 CCATAATGCAGAGACCAGGGG 60.203 57.143 0.00 0.00 0.00 4.79
7842 23139 1.770658 TCCATAATGCAGAGACCAGGG 59.229 52.381 0.00 0.00 0.00 4.45
7843 23140 2.804572 CGTCCATAATGCAGAGACCAGG 60.805 54.545 0.00 0.00 0.00 4.45
7844 23141 2.477825 CGTCCATAATGCAGAGACCAG 58.522 52.381 0.00 0.00 0.00 4.00
7845 23142 1.138859 CCGTCCATAATGCAGAGACCA 59.861 52.381 0.00 0.00 0.00 4.02
7846 23143 1.139058 ACCGTCCATAATGCAGAGACC 59.861 52.381 0.00 0.00 0.00 3.85
7847 23144 2.604046 ACCGTCCATAATGCAGAGAC 57.396 50.000 0.00 0.00 0.00 3.36
7848 23145 3.627395 AAACCGTCCATAATGCAGAGA 57.373 42.857 0.00 0.00 0.00 3.10
7849 23146 3.731867 GCAAAACCGTCCATAATGCAGAG 60.732 47.826 0.00 0.00 32.80 3.35
7850 23147 2.163412 GCAAAACCGTCCATAATGCAGA 59.837 45.455 0.00 0.00 32.80 4.26
7851 23148 2.529151 GCAAAACCGTCCATAATGCAG 58.471 47.619 0.00 0.00 32.80 4.41
7852 23149 1.203523 GGCAAAACCGTCCATAATGCA 59.796 47.619 0.00 0.00 34.14 3.96
7853 23150 1.203523 TGGCAAAACCGTCCATAATGC 59.796 47.619 0.00 0.00 43.94 3.56
7854 23151 3.446799 CATGGCAAAACCGTCCATAATG 58.553 45.455 0.00 0.00 43.94 1.90
7855 23152 2.159114 GCATGGCAAAACCGTCCATAAT 60.159 45.455 0.00 0.00 43.94 1.28
7856 23153 1.203523 GCATGGCAAAACCGTCCATAA 59.796 47.619 0.00 0.00 43.94 1.90
7857 23154 0.814457 GCATGGCAAAACCGTCCATA 59.186 50.000 0.00 0.00 43.94 2.74
7858 23155 1.184322 TGCATGGCAAAACCGTCCAT 61.184 50.000 0.00 0.00 43.94 3.41
7859 23156 1.184322 ATGCATGGCAAAACCGTCCA 61.184 50.000 0.00 0.00 43.62 4.02
7860 23157 0.814457 TATGCATGGCAAAACCGTCC 59.186 50.000 10.16 0.00 43.62 4.79
7861 23158 2.869233 ATATGCATGGCAAAACCGTC 57.131 45.000 10.16 0.00 43.62 4.79
7862 23159 3.608316 AAATATGCATGGCAAAACCGT 57.392 38.095 10.16 0.00 43.62 4.83
7966 23263 7.234782 ACCCATCAAGGATATCGAGTATTGTTA 59.765 37.037 0.00 0.00 41.22 2.41
8114 23411 4.177165 TGTCGACGCAATCTTAACCTTA 57.823 40.909 11.62 0.00 0.00 2.69
8200 23497 3.683802 AGCTCCTTCAGATCAAGTTTGG 58.316 45.455 0.00 0.00 0.00 3.28
8208 23505 2.825205 GCTCAGAAGCTCCTTCAGATC 58.175 52.381 7.62 0.00 45.55 2.75
8286 23583 6.038603 CCACATACCTTTCATCCAATACAGTG 59.961 42.308 0.00 0.00 0.00 3.66
8291 23588 4.887071 GTGCCACATACCTTTCATCCAATA 59.113 41.667 0.00 0.00 0.00 1.90
8328 23625 2.032528 CAGCGGCCTGTCCTTTGA 59.967 61.111 0.00 0.00 34.31 2.69
8334 23631 2.743928 CCAACTCAGCGGCCTGTC 60.744 66.667 0.00 0.00 40.09 3.51
8341 23638 2.166459 TGAAGGTATCTCCAACTCAGCG 59.834 50.000 0.00 0.00 39.02 5.18
8355 23652 3.650139 GTTGCTTCGAGAGTTGAAGGTA 58.350 45.455 6.13 0.00 42.43 3.08
8415 23937 3.475566 ACTGAAGCTGAGTACAAAGCA 57.524 42.857 18.61 1.09 42.06 3.91
8433 23955 1.277557 ACGGTGTCTCGGAGTAGTACT 59.722 52.381 1.37 1.37 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.