Multiple sequence alignment - TraesCS3D01G294000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G294000 chr3D 100.000 3288 0 0 2649 5936 405311045 405307758 0.000000e+00 6072
1 TraesCS3D01G294000 chr3D 100.000 2489 0 0 1 2489 405313693 405311205 0.000000e+00 4597
2 TraesCS3D01G294000 chr3D 91.398 186 13 3 1 184 144238109 144237925 9.880000e-63 252
3 TraesCS3D01G294000 chr3D 97.468 79 2 0 1 79 515298560 515298638 1.040000e-27 135
4 TraesCS3D01G294000 chr3A 92.885 2600 102 31 3379 5936 527840296 527837738 0.000000e+00 3699
5 TraesCS3D01G294000 chr3A 90.261 1612 98 21 185 1776 527841873 527840301 0.000000e+00 2052
6 TraesCS3D01G294000 chr3A 80.892 157 24 6 5479 5633 709597566 709597414 1.050000e-22 119
7 TraesCS3D01G294000 chr3B 93.737 1980 80 27 3378 5327 531212616 531210651 0.000000e+00 2929
8 TraesCS3D01G294000 chr3B 92.159 1033 55 11 758 1776 531213640 531212620 0.000000e+00 1435
9 TraesCS3D01G294000 chr3B 90.698 430 31 5 185 611 531214057 531213634 1.120000e-156 564
10 TraesCS3D01G294000 chr3B 91.000 300 27 0 5637 5936 531210185 531209886 7.160000e-109 405
11 TraesCS3D01G294000 chr3B 92.500 120 7 2 5479 5598 531210306 531210189 2.840000e-38 171
12 TraesCS3D01G294000 chr3B 85.600 125 14 2 1 124 373153010 373153131 1.740000e-25 128
13 TraesCS3D01G294000 chr1D 99.451 729 4 0 2649 3377 62937982 62937254 0.000000e+00 1325
14 TraesCS3D01G294000 chr1D 99.153 708 2 3 1783 2489 62938681 62937977 0.000000e+00 1271
15 TraesCS3D01G294000 chr1D 82.555 321 56 0 3655 3975 363725692 363725372 3.500000e-72 283
16 TraesCS3D01G294000 chr1D 98.148 108 1 1 78 184 234775744 234775851 2.820000e-43 187
17 TraesCS3D01G294000 chr1D 98.148 108 1 1 78 184 243018134 243018027 2.820000e-43 187
18 TraesCS3D01G294000 chr1D 92.727 110 5 3 78 185 412574215 412574107 7.970000e-34 156
19 TraesCS3D01G294000 chr1D 98.701 77 1 0 1 77 392932241 392932317 2.890000e-28 137
20 TraesCS3D01G294000 chr5D 98.904 730 7 1 2649 3377 499746414 499745685 0.000000e+00 1303
21 TraesCS3D01G294000 chr5D 98.222 731 13 0 2649 3379 560417346 560418076 0.000000e+00 1279
22 TraesCS3D01G294000 chr5D 97.948 731 12 3 2649 3377 47084048 47083319 0.000000e+00 1264
23 TraesCS3D01G294000 chr5D 97.585 704 13 4 1783 2484 47084747 47084046 0.000000e+00 1203
24 TraesCS3D01G294000 chr5D 97.034 708 17 4 1783 2489 560416647 560417351 0.000000e+00 1188
25 TraesCS3D01G294000 chr5D 97.030 707 17 4 1783 2489 74714864 74714162 0.000000e+00 1186
26 TraesCS3D01G294000 chr5D 96.522 115 2 2 72 184 516369975 516369861 7.850000e-44 189
27 TraesCS3D01G294000 chr5D 97.222 108 2 1 78 184 488635010 488634903 1.310000e-41 182
28 TraesCS3D01G294000 chr5D 97.222 108 2 1 78 184 489391374 489391481 1.310000e-41 182
29 TraesCS3D01G294000 chr5D 83.436 163 27 0 5479 5641 319130195 319130033 1.030000e-32 152
30 TraesCS3D01G294000 chr6D 98.493 730 10 1 2649 3377 453649497 453650226 0.000000e+00 1286
31 TraesCS3D01G294000 chr6D 98.356 730 9 2 2649 3377 373375067 373374340 0.000000e+00 1279
32 TraesCS3D01G294000 chr6D 99.011 708 4 3 1783 2489 373375767 373375062 0.000000e+00 1266
33 TraesCS3D01G294000 chr6D 97.483 715 13 5 1777 2489 324815764 324816475 0.000000e+00 1216
34 TraesCS3D01G294000 chr6D 97.320 709 14 4 1782 2489 453648798 453649502 0.000000e+00 1199
35 TraesCS3D01G294000 chr6D 97.222 108 2 1 78 184 448437681 448437574 1.310000e-41 182
36 TraesCS3D01G294000 chr6D 97.222 108 2 1 78 184 466556155 466556262 1.310000e-41 182
37 TraesCS3D01G294000 chr6D 91.892 111 4 4 78 185 24515531 24515639 3.710000e-32 150
38 TraesCS3D01G294000 chr6D 91.743 109 8 1 78 185 25277261 25277153 3.710000e-32 150
39 TraesCS3D01G294000 chr6D 91.743 109 7 2 78 185 253407174 253407281 3.710000e-32 150
40 TraesCS3D01G294000 chr4D 98.222 731 12 1 2649 3379 111583075 111582346 0.000000e+00 1277
41 TraesCS3D01G294000 chr4D 97.866 703 12 3 1783 2484 111583773 111583073 0.000000e+00 1212
42 TraesCS3D01G294000 chr4D 92.453 106 6 2 81 185 255219868 255219764 3.710000e-32 150
43 TraesCS3D01G294000 chr4D 90.991 111 8 2 77 185 429309471 429309361 1.330000e-31 148
44 TraesCS3D01G294000 chr7D 98.080 729 13 1 2649 3377 615764681 615765408 0.000000e+00 1267
45 TraesCS3D01G294000 chr7D 98.701 77 1 0 1 77 474722904 474722980 2.890000e-28 137
46 TraesCS3D01G294000 chr7D 80.120 166 29 4 5479 5641 112848947 112849111 2.910000e-23 121
47 TraesCS3D01G294000 chr2D 97.808 730 15 1 2649 3377 3028857 3029586 0.000000e+00 1258
48 TraesCS3D01G294000 chr2D 96.932 717 18 3 1771 2484 3028144 3028859 0.000000e+00 1199
49 TraesCS3D01G294000 chr2D 86.486 185 25 0 3782 3966 437948278 437948462 2.800000e-48 204
50 TraesCS3D01G294000 chr2D 93.204 103 6 1 78 180 124355662 124355763 3.710000e-32 150
51 TraesCS3D01G294000 chr2D 98.701 77 1 0 1 77 146284577 146284501 2.890000e-28 137
52 TraesCS3D01G294000 chr2D 97.468 79 2 0 1 79 482699054 482699132 1.040000e-27 135
53 TraesCS3D01G294000 chr1A 82.769 325 56 0 3655 3979 462796271 462795947 2.090000e-74 291
54 TraesCS3D01G294000 chr1B 81.538 325 60 0 3655 3979 486971810 486971486 9.810000e-68 268
55 TraesCS3D01G294000 chr1B 91.743 109 7 2 78 185 215813559 215813666 3.710000e-32 150
56 TraesCS3D01G294000 chr6A 91.011 178 14 2 1 177 197345911 197346087 7.690000e-59 239
57 TraesCS3D01G294000 chr6A 92.308 104 6 2 78 180 277069459 277069561 4.790000e-31 147
58 TraesCS3D01G294000 chr2A 86.486 185 25 0 3782 3966 550701907 550701723 2.800000e-48 204
59 TraesCS3D01G294000 chrUn 85.946 185 26 0 3782 3966 276463077 276462893 1.300000e-46 198
60 TraesCS3D01G294000 chrUn 78.481 316 58 7 3656 3966 276527303 276527613 1.300000e-46 198
61 TraesCS3D01G294000 chrUn 97.403 77 2 0 1 77 334826600 334826676 1.340000e-26 132
62 TraesCS3D01G294000 chr5B 81.595 163 30 0 5479 5641 369127028 369126866 1.040000e-27 135
63 TraesCS3D01G294000 chr5B 78.313 166 30 4 5486 5645 23822189 23822024 1.050000e-17 102
64 TraesCS3D01G294000 chr5B 90.909 55 5 0 5588 5642 671187215 671187161 2.290000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G294000 chr3D 405307758 405313693 5935 True 5334.5 6072 100.0000 1 5936 2 chr3D.!!$R2 5935
1 TraesCS3D01G294000 chr3A 527837738 527841873 4135 True 2875.5 3699 91.5730 185 5936 2 chr3A.!!$R2 5751
2 TraesCS3D01G294000 chr3B 531209886 531214057 4171 True 1100.8 2929 92.0188 185 5936 5 chr3B.!!$R1 5751
3 TraesCS3D01G294000 chr1D 62937254 62938681 1427 True 1298.0 1325 99.3020 1783 3377 2 chr1D.!!$R4 1594
4 TraesCS3D01G294000 chr5D 499745685 499746414 729 True 1303.0 1303 98.9040 2649 3377 1 chr5D.!!$R4 728
5 TraesCS3D01G294000 chr5D 47083319 47084747 1428 True 1233.5 1264 97.7665 1783 3377 2 chr5D.!!$R6 1594
6 TraesCS3D01G294000 chr5D 560416647 560418076 1429 False 1233.5 1279 97.6280 1783 3379 2 chr5D.!!$F2 1596
7 TraesCS3D01G294000 chr5D 74714162 74714864 702 True 1186.0 1186 97.0300 1783 2489 1 chr5D.!!$R1 706
8 TraesCS3D01G294000 chr6D 373374340 373375767 1427 True 1272.5 1279 98.6835 1783 3377 2 chr6D.!!$R3 1594
9 TraesCS3D01G294000 chr6D 453648798 453650226 1428 False 1242.5 1286 97.9065 1782 3377 2 chr6D.!!$F5 1595
10 TraesCS3D01G294000 chr6D 324815764 324816475 711 False 1216.0 1216 97.4830 1777 2489 1 chr6D.!!$F3 712
11 TraesCS3D01G294000 chr4D 111582346 111583773 1427 True 1244.5 1277 98.0440 1783 3379 2 chr4D.!!$R3 1596
12 TraesCS3D01G294000 chr7D 615764681 615765408 727 False 1267.0 1267 98.0800 2649 3377 1 chr7D.!!$F3 728
13 TraesCS3D01G294000 chr2D 3028144 3029586 1442 False 1228.5 1258 97.3700 1771 3377 2 chr2D.!!$F4 1606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.036294 GGCGCTACAAGAAGAAGGGT 60.036 55.000 7.64 0.00 0.00 4.34 F
177 178 0.106918 AAAGCGGGACAAAGGACACA 60.107 50.000 0.00 0.00 0.00 3.72 F
328 330 0.108662 GGGCTTCGGGCAAAATTGAG 60.109 55.000 0.00 0.00 44.01 3.02 F
1498 1529 0.534412 AGAAGATCGCACTCAGGTGG 59.466 55.000 0.00 0.00 43.18 4.61 F
1560 1591 0.671781 AGTCTCAGGCACGCATGAAC 60.672 55.000 7.85 8.81 36.28 3.18 F
1566 1597 0.736325 AGGCACGCATGAACGTACTC 60.736 55.000 0.00 0.00 46.34 2.59 F
1567 1598 1.693083 GGCACGCATGAACGTACTCC 61.693 60.000 0.00 0.00 46.34 3.85 F
1573 1604 1.726791 GCATGAACGTACTCCACTGTG 59.273 52.381 0.00 0.00 0.00 3.66 F
1574 1605 1.726791 CATGAACGTACTCCACTGTGC 59.273 52.381 1.29 0.00 0.00 4.57 F
1581 1612 2.029290 CGTACTCCACTGTGCTTACCTT 60.029 50.000 1.29 0.00 0.00 3.50 F
1643 1675 2.737252 GACCTGGTTCATCTTTGACGTC 59.263 50.000 9.11 9.11 0.00 4.34 F
3617 3658 3.057456 CACCGTGCAGTAGTAGTTCTTCT 60.057 47.826 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1157 1175 0.380024 GTAAGGCGAGACGAGGTACC 59.620 60.000 2.73 2.73 0.00 3.34 R
1260 1291 0.647410 CCTGCACATCAACGATCGAC 59.353 55.000 24.34 1.04 0.00 4.20 R
1541 1572 0.671781 GTTCATGCGTGCCTGAGACT 60.672 55.000 0.00 0.00 0.00 3.24 R
3394 3435 0.667993 GCCAAGTGCACAGTGCTTAA 59.332 50.000 25.83 3.29 45.31 1.85 R
3432 3473 2.124903 CACGTACTGAACAGTGACCAC 58.875 52.381 16.37 6.62 42.52 4.16 R
3442 3483 7.479897 TGTTAATTAAGTTGCACGTACTGAA 57.520 32.000 0.00 0.00 0.00 3.02 R
3584 3625 0.315886 TGCACGGTGGTACTACAGTG 59.684 55.000 29.26 29.26 45.51 3.66 R
3585 3626 0.601558 CTGCACGGTGGTACTACAGT 59.398 55.000 11.80 10.51 0.00 3.55 R
3586 3627 0.601558 ACTGCACGGTGGTACTACAG 59.398 55.000 11.80 9.81 0.00 2.74 R
3593 3634 1.271656 GAACTACTACTGCACGGTGGT 59.728 52.381 10.60 3.99 35.24 4.16 R
3650 3692 1.005630 GCGAACAGAGTGACCTGCT 60.006 57.895 0.00 0.00 37.68 4.24 R
5611 5905 0.957888 GTTTGGGACTGCTCTGCTCC 60.958 60.000 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.143333 GAGGAGGCGGCGCTACAA 62.143 66.667 32.30 0.00 0.00 2.41
26 27 4.148825 AGGAGGCGGCGCTACAAG 62.149 66.667 32.30 0.00 0.00 3.16
27 28 4.143333 GGAGGCGGCGCTACAAGA 62.143 66.667 32.30 0.00 0.00 3.02
28 29 2.125673 GAGGCGGCGCTACAAGAA 60.126 61.111 32.30 0.00 0.00 2.52
29 30 2.125512 AGGCGGCGCTACAAGAAG 60.126 61.111 32.30 0.00 0.00 2.85
30 31 2.125673 GGCGGCGCTACAAGAAGA 60.126 61.111 32.30 0.00 0.00 2.87
31 32 1.740296 GGCGGCGCTACAAGAAGAA 60.740 57.895 32.30 0.00 0.00 2.52
32 33 1.696832 GGCGGCGCTACAAGAAGAAG 61.697 60.000 32.30 0.00 0.00 2.85
33 34 1.696832 GCGGCGCTACAAGAAGAAGG 61.697 60.000 26.86 0.00 0.00 3.46
34 35 1.084370 CGGCGCTACAAGAAGAAGGG 61.084 60.000 7.64 0.00 0.00 3.95
35 36 0.036294 GGCGCTACAAGAAGAAGGGT 60.036 55.000 7.64 0.00 0.00 4.34
36 37 1.360820 GCGCTACAAGAAGAAGGGTC 58.639 55.000 0.00 0.00 0.00 4.46
37 38 1.630148 CGCTACAAGAAGAAGGGTCG 58.370 55.000 0.00 0.00 0.00 4.79
38 39 1.360820 GCTACAAGAAGAAGGGTCGC 58.639 55.000 0.00 0.00 0.00 5.19
39 40 2.007547 GCTACAAGAAGAAGGGTCGCC 61.008 57.143 0.00 0.00 0.00 5.54
40 41 0.245539 TACAAGAAGAAGGGTCGCCG 59.754 55.000 0.00 0.00 0.00 6.46
41 42 1.741770 CAAGAAGAAGGGTCGCCGG 60.742 63.158 0.00 0.00 0.00 6.13
42 43 3.607370 AAGAAGAAGGGTCGCCGGC 62.607 63.158 19.07 19.07 0.00 6.13
67 68 3.494336 CGGCGCTGCAAGAGGAAG 61.494 66.667 7.64 0.00 34.07 3.46
68 69 3.130160 GGCGCTGCAAGAGGAAGG 61.130 66.667 7.64 0.00 34.07 3.46
69 70 3.130160 GCGCTGCAAGAGGAAGGG 61.130 66.667 0.00 0.00 34.07 3.95
70 71 2.348998 CGCTGCAAGAGGAAGGGT 59.651 61.111 0.00 0.00 34.07 4.34
71 72 1.596934 CGCTGCAAGAGGAAGGGTA 59.403 57.895 0.00 0.00 34.07 3.69
72 73 0.460987 CGCTGCAAGAGGAAGGGTAG 60.461 60.000 0.00 0.00 34.07 3.18
73 74 0.746204 GCTGCAAGAGGAAGGGTAGC 60.746 60.000 0.00 0.00 34.07 3.58
74 75 0.107459 CTGCAAGAGGAAGGGTAGCC 60.107 60.000 1.60 1.60 34.07 3.93
75 76 1.153349 GCAAGAGGAAGGGTAGCCG 60.153 63.158 5.06 0.00 0.00 5.52
76 77 1.522569 CAAGAGGAAGGGTAGCCGG 59.477 63.158 5.06 0.00 0.00 6.13
77 78 1.080538 AAGAGGAAGGGTAGCCGGT 59.919 57.895 1.90 0.00 0.00 5.28
78 79 1.265454 AAGAGGAAGGGTAGCCGGTG 61.265 60.000 1.90 0.00 0.00 4.94
79 80 1.988406 GAGGAAGGGTAGCCGGTGT 60.988 63.158 1.90 0.00 0.00 4.16
80 81 1.957765 GAGGAAGGGTAGCCGGTGTC 61.958 65.000 1.90 2.10 0.00 3.67
81 82 2.183555 GAAGGGTAGCCGGTGTCG 59.816 66.667 1.90 0.00 0.00 4.35
82 83 2.602568 AAGGGTAGCCGGTGTCGT 60.603 61.111 1.90 0.00 33.95 4.34
83 84 2.830704 GAAGGGTAGCCGGTGTCGTG 62.831 65.000 1.90 0.00 33.95 4.35
84 85 4.446413 GGGTAGCCGGTGTCGTGG 62.446 72.222 1.90 0.00 33.95 4.94
85 86 3.688159 GGTAGCCGGTGTCGTGGT 61.688 66.667 1.90 0.00 33.95 4.16
86 87 2.341176 GTAGCCGGTGTCGTGGTT 59.659 61.111 1.90 0.00 33.95 3.67
87 88 1.301165 GTAGCCGGTGTCGTGGTTT 60.301 57.895 1.90 0.00 33.95 3.27
88 89 0.881600 GTAGCCGGTGTCGTGGTTTT 60.882 55.000 1.90 0.00 33.95 2.43
89 90 0.881159 TAGCCGGTGTCGTGGTTTTG 60.881 55.000 1.90 0.00 33.95 2.44
90 91 2.474612 GCCGGTGTCGTGGTTTTGT 61.475 57.895 1.90 0.00 33.95 2.83
91 92 1.644913 CCGGTGTCGTGGTTTTGTC 59.355 57.895 0.00 0.00 33.95 3.18
92 93 1.090625 CCGGTGTCGTGGTTTTGTCA 61.091 55.000 0.00 0.00 33.95 3.58
93 94 0.941542 CGGTGTCGTGGTTTTGTCAT 59.058 50.000 0.00 0.00 0.00 3.06
94 95 1.333702 CGGTGTCGTGGTTTTGTCATG 60.334 52.381 0.00 0.00 0.00 3.07
95 96 1.001815 GGTGTCGTGGTTTTGTCATGG 60.002 52.381 0.00 0.00 0.00 3.66
96 97 0.665835 TGTCGTGGTTTTGTCATGGC 59.334 50.000 0.00 0.00 0.00 4.40
97 98 0.665835 GTCGTGGTTTTGTCATGGCA 59.334 50.000 0.00 0.00 0.00 4.92
98 99 0.950836 TCGTGGTTTTGTCATGGCAG 59.049 50.000 0.00 0.00 0.00 4.85
99 100 0.950836 CGTGGTTTTGTCATGGCAGA 59.049 50.000 0.00 0.00 0.00 4.26
100 101 1.541147 CGTGGTTTTGTCATGGCAGAT 59.459 47.619 0.00 0.00 0.00 2.90
101 102 2.669113 CGTGGTTTTGTCATGGCAGATG 60.669 50.000 0.00 0.00 0.00 2.90
102 103 2.297033 GTGGTTTTGTCATGGCAGATGT 59.703 45.455 0.00 0.00 0.00 3.06
103 104 2.557924 TGGTTTTGTCATGGCAGATGTC 59.442 45.455 0.00 0.00 0.00 3.06
104 105 2.094545 GGTTTTGTCATGGCAGATGTCC 60.095 50.000 0.00 0.00 0.00 4.02
105 106 2.821969 GTTTTGTCATGGCAGATGTCCT 59.178 45.455 0.00 0.00 0.00 3.85
106 107 3.998913 TTTGTCATGGCAGATGTCCTA 57.001 42.857 0.00 0.00 0.00 2.94
107 108 3.548745 TTGTCATGGCAGATGTCCTAG 57.451 47.619 0.00 0.00 0.00 3.02
108 109 2.470990 TGTCATGGCAGATGTCCTAGT 58.529 47.619 0.00 0.00 0.00 2.57
109 110 2.169144 TGTCATGGCAGATGTCCTAGTG 59.831 50.000 0.00 0.00 0.00 2.74
110 111 2.432146 GTCATGGCAGATGTCCTAGTGA 59.568 50.000 0.00 0.00 0.00 3.41
111 112 3.106827 TCATGGCAGATGTCCTAGTGAA 58.893 45.455 0.00 0.00 0.00 3.18
112 113 3.519107 TCATGGCAGATGTCCTAGTGAAA 59.481 43.478 0.00 0.00 0.00 2.69
113 114 3.616956 TGGCAGATGTCCTAGTGAAAG 57.383 47.619 0.00 0.00 0.00 2.62
114 115 2.237143 TGGCAGATGTCCTAGTGAAAGG 59.763 50.000 0.00 0.00 38.06 3.11
115 116 2.501723 GGCAGATGTCCTAGTGAAAGGA 59.498 50.000 0.00 0.00 43.58 3.36
124 125 4.660168 TCCTAGTGAAAGGACTTAGTCGT 58.340 43.478 6.27 3.84 40.86 4.34
125 126 4.458295 TCCTAGTGAAAGGACTTAGTCGTG 59.542 45.833 8.39 0.00 40.86 4.35
126 127 3.662247 AGTGAAAGGACTTAGTCGTGG 57.338 47.619 8.39 0.00 32.65 4.94
127 128 3.228453 AGTGAAAGGACTTAGTCGTGGA 58.772 45.455 8.39 0.00 32.65 4.02
128 129 3.256136 AGTGAAAGGACTTAGTCGTGGAG 59.744 47.826 8.39 0.00 32.65 3.86
129 130 2.029290 TGAAAGGACTTAGTCGTGGAGC 60.029 50.000 8.39 0.20 32.65 4.70
130 131 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
131 132 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
132 133 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
133 134 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
134 135 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
135 136 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
136 137 2.607668 TTAGTCGTGGAGCCATCGCG 62.608 60.000 0.00 0.00 41.18 5.87
137 138 4.492160 GTCGTGGAGCCATCGCGA 62.492 66.667 13.09 13.09 41.18 5.87
138 139 4.492160 TCGTGGAGCCATCGCGAC 62.492 66.667 12.93 0.00 41.18 5.19
143 144 4.814294 GAGCCATCGCGACGGGTT 62.814 66.667 27.73 21.48 41.18 4.11
144 145 3.420214 GAGCCATCGCGACGGGTTA 62.420 63.158 27.73 0.00 41.18 2.85
145 146 2.960129 GCCATCGCGACGGGTTAG 60.960 66.667 24.20 0.00 0.00 2.34
146 147 2.960129 CCATCGCGACGGGTTAGC 60.960 66.667 14.67 0.00 0.00 3.09
147 148 2.104331 CATCGCGACGGGTTAGCT 59.896 61.111 12.93 0.00 0.00 3.32
148 149 1.518572 CATCGCGACGGGTTAGCTT 60.519 57.895 12.93 0.00 0.00 3.74
149 150 0.248743 CATCGCGACGGGTTAGCTTA 60.249 55.000 12.93 0.00 0.00 3.09
150 151 0.457035 ATCGCGACGGGTTAGCTTAA 59.543 50.000 12.93 0.00 0.00 1.85
151 152 0.243365 TCGCGACGGGTTAGCTTAAA 59.757 50.000 3.71 0.00 0.00 1.52
152 153 0.643820 CGCGACGGGTTAGCTTAAAG 59.356 55.000 0.00 0.00 0.00 1.85
153 154 1.004595 GCGACGGGTTAGCTTAAAGG 58.995 55.000 0.00 0.00 0.00 3.11
154 155 1.648504 CGACGGGTTAGCTTAAAGGG 58.351 55.000 0.00 0.00 0.00 3.95
155 156 1.741394 CGACGGGTTAGCTTAAAGGGG 60.741 57.143 0.00 0.00 0.00 4.79
156 157 1.280133 GACGGGTTAGCTTAAAGGGGT 59.720 52.381 0.00 0.00 0.00 4.95
157 158 1.706866 ACGGGTTAGCTTAAAGGGGTT 59.293 47.619 0.00 0.00 0.00 4.11
158 159 2.912295 ACGGGTTAGCTTAAAGGGGTTA 59.088 45.455 0.00 0.00 0.00 2.85
159 160 3.330405 ACGGGTTAGCTTAAAGGGGTTAA 59.670 43.478 0.00 0.00 0.00 2.01
160 161 4.202556 ACGGGTTAGCTTAAAGGGGTTAAA 60.203 41.667 0.00 0.00 31.22 1.52
161 162 4.397103 CGGGTTAGCTTAAAGGGGTTAAAG 59.603 45.833 0.00 0.00 31.22 1.85
162 163 4.159135 GGGTTAGCTTAAAGGGGTTAAAGC 59.841 45.833 0.00 0.00 31.22 3.51
163 164 4.142534 GGTTAGCTTAAAGGGGTTAAAGCG 60.143 45.833 0.00 0.00 34.09 4.68
164 165 2.443416 AGCTTAAAGGGGTTAAAGCGG 58.557 47.619 0.00 0.00 34.09 5.52
165 166 1.475280 GCTTAAAGGGGTTAAAGCGGG 59.525 52.381 0.00 0.00 31.22 6.13
166 167 2.880990 GCTTAAAGGGGTTAAAGCGGGA 60.881 50.000 0.00 0.00 31.22 5.14
167 168 2.495155 TAAAGGGGTTAAAGCGGGAC 57.505 50.000 0.00 0.00 0.00 4.46
168 169 0.479378 AAAGGGGTTAAAGCGGGACA 59.521 50.000 0.00 0.00 0.00 4.02
169 170 0.479378 AAGGGGTTAAAGCGGGACAA 59.521 50.000 0.00 0.00 0.00 3.18
170 171 0.479378 AGGGGTTAAAGCGGGACAAA 59.521 50.000 0.00 0.00 0.00 2.83
171 172 0.885879 GGGGTTAAAGCGGGACAAAG 59.114 55.000 0.00 0.00 0.00 2.77
172 173 0.885879 GGGTTAAAGCGGGACAAAGG 59.114 55.000 0.00 0.00 0.00 3.11
173 174 1.546099 GGGTTAAAGCGGGACAAAGGA 60.546 52.381 0.00 0.00 0.00 3.36
174 175 1.538512 GGTTAAAGCGGGACAAAGGAC 59.461 52.381 0.00 0.00 0.00 3.85
175 176 2.223745 GTTAAAGCGGGACAAAGGACA 58.776 47.619 0.00 0.00 0.00 4.02
176 177 1.886886 TAAAGCGGGACAAAGGACAC 58.113 50.000 0.00 0.00 0.00 3.67
177 178 0.106918 AAAGCGGGACAAAGGACACA 60.107 50.000 0.00 0.00 0.00 3.72
178 179 0.106918 AAGCGGGACAAAGGACACAA 60.107 50.000 0.00 0.00 0.00 3.33
179 180 0.535102 AGCGGGACAAAGGACACAAG 60.535 55.000 0.00 0.00 0.00 3.16
180 181 1.515521 GCGGGACAAAGGACACAAGG 61.516 60.000 0.00 0.00 0.00 3.61
181 182 0.889186 CGGGACAAAGGACACAAGGG 60.889 60.000 0.00 0.00 0.00 3.95
182 183 0.185175 GGGACAAAGGACACAAGGGT 59.815 55.000 0.00 0.00 0.00 4.34
183 184 1.411074 GGGACAAAGGACACAAGGGTT 60.411 52.381 0.00 0.00 0.00 4.11
208 209 3.959329 AACCTCCGACTCCCCTCCG 62.959 68.421 0.00 0.00 0.00 4.63
228 229 1.079405 CGGCGACACCACTACCAAT 60.079 57.895 0.00 0.00 39.03 3.16
229 230 1.358725 CGGCGACACCACTACCAATG 61.359 60.000 0.00 0.00 39.03 2.82
248 249 4.649705 TTCCCTGGCTCCGGGTCA 62.650 66.667 12.54 0.00 42.56 4.02
328 330 0.108662 GGGCTTCGGGCAAAATTGAG 60.109 55.000 0.00 0.00 44.01 3.02
355 357 3.632145 ACGAATTGGATTATGAGGCAACC 59.368 43.478 0.00 0.00 37.17 3.77
410 412 4.427312 ACCTAATATTTGACGTGACGGAC 58.573 43.478 10.66 3.57 0.00 4.79
415 417 1.942677 TTTGACGTGACGGACATTGT 58.057 45.000 10.66 0.00 0.00 2.71
459 461 5.196695 TGCATGGCATTATTTGTACCACTA 58.803 37.500 0.00 0.00 31.71 2.74
461 463 5.977129 GCATGGCATTATTTGTACCACTAAC 59.023 40.000 0.00 0.00 32.13 2.34
465 467 5.813672 GGCATTATTTGTACCACTAACGAGA 59.186 40.000 0.00 0.00 0.00 4.04
472 474 4.053295 TGTACCACTAACGAGAAAAGCAC 58.947 43.478 0.00 0.00 0.00 4.40
477 479 3.186613 CACTAACGAGAAAAGCACCTTCC 59.813 47.826 0.00 0.00 0.00 3.46
558 562 4.035091 GTCATGGCACGCTTTAACATCATA 59.965 41.667 0.00 0.00 0.00 2.15
559 563 4.821260 TCATGGCACGCTTTAACATCATAT 59.179 37.500 0.00 0.00 0.00 1.78
560 564 5.994668 TCATGGCACGCTTTAACATCATATA 59.005 36.000 0.00 0.00 0.00 0.86
561 565 6.654582 TCATGGCACGCTTTAACATCATATAT 59.345 34.615 0.00 0.00 0.00 0.86
684 690 1.482182 TCTGGGATCGACAAGTCCATG 59.518 52.381 5.21 0.00 36.19 3.66
690 696 1.811266 CGACAAGTCCATGGGCGAG 60.811 63.158 11.52 10.18 0.00 5.03
691 697 1.296715 GACAAGTCCATGGGCGAGT 59.703 57.895 11.52 13.67 0.00 4.18
778 785 0.817634 CGGTGACAAGACCAAAGGCA 60.818 55.000 0.00 0.00 35.50 4.75
786 793 3.826729 ACAAGACCAAAGGCAAGTTATCC 59.173 43.478 0.00 0.00 0.00 2.59
950 967 3.494336 CTCCGCGCTCTGCCTTTG 61.494 66.667 5.56 0.00 42.08 2.77
1005 1023 4.271170 CGAGCGAGCGAAATGGCG 62.271 66.667 0.00 0.00 38.18 5.69
1073 1091 2.403987 CTACGACGGCGACAGGAG 59.596 66.667 22.49 6.36 41.64 3.69
1243 1274 4.815308 AGTCGCGTACTGTTAGATAGATGT 59.185 41.667 5.77 0.00 36.93 3.06
1260 1291 2.100631 GTGCGGTGAAGGTGATCGG 61.101 63.158 0.00 0.00 0.00 4.18
1498 1529 0.534412 AGAAGATCGCACTCAGGTGG 59.466 55.000 0.00 0.00 43.18 4.61
1507 1538 2.359602 CTCAGGTGGGTGCTGCTG 60.360 66.667 0.00 0.00 0.00 4.41
1519 1550 0.965866 TGCTGCTGCTACGTACTCCT 60.966 55.000 17.00 0.00 40.48 3.69
1527 1558 2.889045 TGCTACGTACTCCTTCAGTGTT 59.111 45.455 0.00 0.00 36.43 3.32
1532 1563 3.827302 ACGTACTCCTTCAGTGTTGAGAT 59.173 43.478 11.46 2.20 36.43 2.75
1533 1564 5.008331 ACGTACTCCTTCAGTGTTGAGATA 58.992 41.667 11.46 1.52 36.43 1.98
1534 1565 5.106237 ACGTACTCCTTCAGTGTTGAGATAC 60.106 44.000 11.46 9.30 36.43 2.24
1535 1566 4.442375 ACTCCTTCAGTGTTGAGATACG 57.558 45.455 11.46 0.00 34.15 3.06
1536 1567 3.827302 ACTCCTTCAGTGTTGAGATACGT 59.173 43.478 11.46 0.00 34.15 3.57
1537 1568 4.281182 ACTCCTTCAGTGTTGAGATACGTT 59.719 41.667 0.00 0.00 34.15 3.99
1540 1571 5.010719 TCCTTCAGTGTTGAGATACGTTTCT 59.989 40.000 8.34 8.34 34.15 2.52
1541 1572 6.208007 TCCTTCAGTGTTGAGATACGTTTCTA 59.792 38.462 8.59 0.00 34.15 2.10
1542 1573 6.528423 CCTTCAGTGTTGAGATACGTTTCTAG 59.472 42.308 8.59 0.00 34.15 2.43
1549 1580 6.127980 TGTTGAGATACGTTTCTAGTCTCAGG 60.128 42.308 8.59 0.00 44.11 3.86
1560 1591 0.671781 AGTCTCAGGCACGCATGAAC 60.672 55.000 7.85 8.81 36.28 3.18
1566 1597 0.736325 AGGCACGCATGAACGTACTC 60.736 55.000 0.00 0.00 46.34 2.59
1567 1598 1.693083 GGCACGCATGAACGTACTCC 61.693 60.000 0.00 0.00 46.34 3.85
1573 1604 1.726791 GCATGAACGTACTCCACTGTG 59.273 52.381 0.00 0.00 0.00 3.66
1574 1605 1.726791 CATGAACGTACTCCACTGTGC 59.273 52.381 1.29 0.00 0.00 4.57
1581 1612 2.029290 CGTACTCCACTGTGCTTACCTT 60.029 50.000 1.29 0.00 0.00 3.50
1585 1616 3.008049 ACTCCACTGTGCTTACCTTTAGG 59.992 47.826 1.29 0.00 42.17 2.69
1643 1675 2.737252 GACCTGGTTCATCTTTGACGTC 59.263 50.000 9.11 9.11 0.00 4.34
1772 1804 5.940470 AGTCAGTTCCTTATTTGCAAGGTAG 59.060 40.000 0.00 0.00 44.68 3.18
1776 1808 6.653320 CAGTTCCTTATTTGCAAGGTAGTACA 59.347 38.462 0.00 0.00 44.68 2.90
1778 1810 7.888546 AGTTCCTTATTTGCAAGGTAGTACAAT 59.111 33.333 0.00 0.00 44.68 2.71
1779 1811 9.169592 GTTCCTTATTTGCAAGGTAGTACAATA 57.830 33.333 0.00 0.00 44.68 1.90
1780 1812 8.958119 TCCTTATTTGCAAGGTAGTACAATAG 57.042 34.615 0.00 0.00 44.68 1.73
3253 3294 6.621737 TCAGCGTAAAAACACGTCTATTAG 57.378 37.500 0.00 0.00 43.79 1.73
3379 3420 9.256317 AAGCACCACCTGTGATATTACCTCTAC 62.256 44.444 0.00 0.00 44.38 2.59
3380 3421 5.525484 ACCACCTGTGATATTACCTCTACA 58.475 41.667 0.00 0.00 0.00 2.74
3381 3422 5.962031 ACCACCTGTGATATTACCTCTACAA 59.038 40.000 0.00 0.00 0.00 2.41
3442 3483 3.214328 CCAAGCTAAAAGTGGTCACTGT 58.786 45.455 4.22 0.00 41.58 3.55
3581 3622 6.569780 GTCCAGATTCTCTCTTCCTTTCTAC 58.430 44.000 0.00 0.00 29.16 2.59
3582 3623 6.379988 GTCCAGATTCTCTCTTCCTTTCTACT 59.620 42.308 0.00 0.00 29.16 2.57
3583 3624 6.605594 TCCAGATTCTCTCTTCCTTTCTACTC 59.394 42.308 0.00 0.00 29.16 2.59
3584 3625 6.183360 CCAGATTCTCTCTTCCTTTCTACTCC 60.183 46.154 0.00 0.00 29.16 3.85
3585 3626 6.379703 CAGATTCTCTCTTCCTTTCTACTCCA 59.620 42.308 0.00 0.00 29.16 3.86
3586 3627 5.986501 TTCTCTCTTCCTTTCTACTCCAC 57.013 43.478 0.00 0.00 0.00 4.02
3587 3628 5.263872 TCTCTCTTCCTTTCTACTCCACT 57.736 43.478 0.00 0.00 0.00 4.00
3588 3629 5.013547 TCTCTCTTCCTTTCTACTCCACTG 58.986 45.833 0.00 0.00 0.00 3.66
3589 3630 4.742012 TCTCTTCCTTTCTACTCCACTGT 58.258 43.478 0.00 0.00 0.00 3.55
3591 3632 5.946972 TCTCTTCCTTTCTACTCCACTGTAG 59.053 44.000 0.00 0.00 40.75 2.74
3592 3633 5.642165 TCTTCCTTTCTACTCCACTGTAGT 58.358 41.667 0.00 0.00 40.39 2.73
3593 3634 6.787170 TCTTCCTTTCTACTCCACTGTAGTA 58.213 40.000 0.00 0.00 40.39 1.82
3594 3635 6.658391 TCTTCCTTTCTACTCCACTGTAGTAC 59.342 42.308 0.00 0.00 40.39 2.73
3617 3658 3.057456 CACCGTGCAGTAGTAGTTCTTCT 60.057 47.826 0.00 0.00 0.00 2.85
3620 3661 4.167268 CGTGCAGTAGTAGTTCTTCTTCC 58.833 47.826 0.00 0.00 0.00 3.46
3650 3692 2.760634 ATGCGCCACGGATGATATAA 57.239 45.000 4.18 0.00 36.41 0.98
3717 3759 3.148031 GATCGCGGACAGGTACCCC 62.148 68.421 8.74 1.41 0.00 4.95
3724 3766 4.305956 ACAGGTACCCCGACCCGT 62.306 66.667 8.74 0.00 40.74 5.28
4004 4067 4.637483 ATGCATCCAATTCCAAACTACG 57.363 40.909 0.00 0.00 0.00 3.51
4007 4070 3.625764 GCATCCAATTCCAAACTACGCTA 59.374 43.478 0.00 0.00 0.00 4.26
4009 4072 3.267483 TCCAATTCCAAACTACGCTAGC 58.733 45.455 4.06 4.06 0.00 3.42
4045 4122 2.115348 CGTGAATGATCATGGCTTGC 57.885 50.000 9.46 0.00 38.65 4.01
4050 4127 0.596577 ATGATCATGGCTTGCGCATC 59.403 50.000 12.75 6.23 38.10 3.91
4087 4164 1.604308 CATGGTTCAGGCTGCCACA 60.604 57.895 22.65 11.54 34.84 4.17
4267 4344 2.187163 GTTCAGGGCGCCTACCTC 59.813 66.667 28.56 9.28 35.78 3.85
4316 4393 1.678101 AGCAACTGGTGAGAAACTTGC 59.322 47.619 0.00 0.00 37.60 4.01
4332 4409 2.327568 CTTGCAAAGCATTACGGTTGG 58.672 47.619 0.00 0.00 38.76 3.77
4333 4410 1.610363 TGCAAAGCATTACGGTTGGA 58.390 45.000 0.00 0.00 34.92 3.53
4334 4411 1.268352 TGCAAAGCATTACGGTTGGAC 59.732 47.619 0.00 0.00 34.92 4.02
4335 4412 1.539827 GCAAAGCATTACGGTTGGACT 59.460 47.619 0.00 0.00 34.92 3.85
4336 4413 2.030274 GCAAAGCATTACGGTTGGACTT 60.030 45.455 0.00 0.00 34.92 3.01
4365 4442 2.280628 GAATGGAAGGGTACTCGCAAG 58.719 52.381 0.00 0.00 0.00 4.01
4368 4445 1.418637 TGGAAGGGTACTCGCAAGTTT 59.581 47.619 0.00 0.00 36.92 2.66
4381 4458 6.761117 ACTCGCAAGTTTTGAATTTGTTTTC 58.239 32.000 0.00 0.00 39.48 2.29
4394 4474 6.700960 TGAATTTGTTTTCAACTATGCAGGTG 59.299 34.615 0.00 0.00 41.21 4.00
4460 4540 1.204704 CTGCAGAACGAGTACCCATCA 59.795 52.381 8.42 0.00 0.00 3.07
4513 4593 9.422681 AGTGGTATGTACAGTAGAATCTTATGT 57.577 33.333 0.33 5.56 0.00 2.29
4549 4629 9.774742 GTTAATTATCTTGAATTCACACACCTC 57.225 33.333 7.89 0.00 31.51 3.85
4579 4662 5.726688 GCTTGCGTATCATTAATCAACGTGT 60.727 40.000 12.65 0.00 36.03 4.49
4589 4672 8.407457 TCATTAATCAACGTGTATCTTCACTC 57.593 34.615 0.00 0.00 36.33 3.51
4651 4735 1.979308 TGTTCCCGGGTTCATGACTTA 59.021 47.619 22.86 0.00 0.00 2.24
4782 4867 0.178987 GACTGCTAGGGGAGATCGGA 60.179 60.000 0.00 0.00 34.86 4.55
4869 4954 0.464554 GTAGGCCCAAGCTGATGGAC 60.465 60.000 5.98 0.00 43.54 4.02
4949 5034 1.718396 GTCTAAGTAACGTGCACCCC 58.282 55.000 12.15 0.00 0.00 4.95
5098 5183 3.243569 CGGTCTCTCGCCTATTGAAGAAT 60.244 47.826 0.00 0.00 0.00 2.40
5247 5332 2.869233 AATTGGGTGCATGATAACGC 57.131 45.000 0.00 0.07 0.00 4.84
5362 5480 2.139917 TGCACGGAGTTGTAATCACAC 58.860 47.619 0.00 0.00 41.61 3.82
5364 5482 2.742053 GCACGGAGTTGTAATCACACAT 59.258 45.455 0.00 0.00 41.61 3.21
5365 5483 3.424829 GCACGGAGTTGTAATCACACATG 60.425 47.826 0.00 0.00 41.61 3.21
5396 5514 5.122239 GTCGACAATTTCATGAATCACTCCA 59.878 40.000 11.55 0.00 0.00 3.86
5400 5518 5.416952 ACAATTTCATGAATCACTCCACTCC 59.583 40.000 9.40 0.00 0.00 3.85
5427 5549 4.643334 TCAGCTCCATTTCATCAAATCCAG 59.357 41.667 0.00 0.00 28.97 3.86
5443 5565 7.725251 TCAAATCCAGTTTAAAGCAGTTTCAT 58.275 30.769 0.00 0.00 0.00 2.57
5538 5832 7.667219 ACAAGGAATTGTACATCAGATTCAAGT 59.333 33.333 16.15 10.03 32.60 3.16
5563 5857 4.909696 TTTATGGCGTGGAACATTATGG 57.090 40.909 0.00 0.00 44.52 2.74
5571 5865 3.181465 CGTGGAACATTATGGAGCTACCT 60.181 47.826 0.00 0.00 44.52 3.08
5611 5905 6.992063 TTTAGAGCAGAGCTGAATTTTAGG 57.008 37.500 0.85 0.00 39.88 2.69
5622 5916 3.614092 TGAATTTTAGGGAGCAGAGCAG 58.386 45.455 0.00 0.00 0.00 4.24
5625 5919 0.905357 TTTAGGGAGCAGAGCAGTCC 59.095 55.000 0.00 0.00 0.00 3.85
5635 5929 0.183492 AGAGCAGTCCCAAACAAGCA 59.817 50.000 0.00 0.00 34.64 3.91
5784 6078 3.256631 GGAAAGATGGCAAAAGCTCAGAA 59.743 43.478 0.00 0.00 0.00 3.02
5805 6099 6.540189 CAGAACCTCCCATAACAATTAGTGAG 59.460 42.308 0.00 0.00 0.00 3.51
5885 6179 7.288810 AGATTTTGTGCCTTGATAACAAAGA 57.711 32.000 0.00 0.00 42.79 2.52
5896 6190 9.120538 GCCTTGATAACAAAGAGGTATTGAATA 57.879 33.333 0.00 0.00 35.49 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.143333 TTGTAGCGCCGCCTCCTC 62.143 66.667 4.98 0.00 0.00 3.71
10 11 3.659089 TTCTTGTAGCGCCGCCTCC 62.659 63.158 4.98 0.00 0.00 4.30
11 12 2.125673 TTCTTGTAGCGCCGCCTC 60.126 61.111 4.98 0.00 0.00 4.70
12 13 2.125512 CTTCTTGTAGCGCCGCCT 60.126 61.111 4.98 0.00 0.00 5.52
13 14 1.696832 CTTCTTCTTGTAGCGCCGCC 61.697 60.000 4.98 0.00 0.00 6.13
14 15 1.696832 CCTTCTTCTTGTAGCGCCGC 61.697 60.000 2.29 0.00 0.00 6.53
15 16 1.084370 CCCTTCTTCTTGTAGCGCCG 61.084 60.000 2.29 0.00 0.00 6.46
16 17 0.036294 ACCCTTCTTCTTGTAGCGCC 60.036 55.000 2.29 0.00 0.00 6.53
17 18 1.360820 GACCCTTCTTCTTGTAGCGC 58.639 55.000 0.00 0.00 0.00 5.92
18 19 1.630148 CGACCCTTCTTCTTGTAGCG 58.370 55.000 0.00 0.00 0.00 4.26
19 20 1.360820 GCGACCCTTCTTCTTGTAGC 58.639 55.000 0.00 0.00 0.00 3.58
20 21 1.736032 CGGCGACCCTTCTTCTTGTAG 60.736 57.143 0.00 0.00 0.00 2.74
21 22 0.245539 CGGCGACCCTTCTTCTTGTA 59.754 55.000 0.00 0.00 0.00 2.41
22 23 1.004918 CGGCGACCCTTCTTCTTGT 60.005 57.895 0.00 0.00 0.00 3.16
23 24 1.741770 CCGGCGACCCTTCTTCTTG 60.742 63.158 9.30 0.00 0.00 3.02
24 25 2.663196 CCGGCGACCCTTCTTCTT 59.337 61.111 9.30 0.00 0.00 2.52
25 26 4.083862 GCCGGCGACCCTTCTTCT 62.084 66.667 12.58 0.00 0.00 2.85
50 51 3.494336 CTTCCTCTTGCAGCGCCG 61.494 66.667 2.29 0.00 0.00 6.46
51 52 3.130160 CCTTCCTCTTGCAGCGCC 61.130 66.667 2.29 0.00 0.00 6.53
52 53 2.521958 TACCCTTCCTCTTGCAGCGC 62.522 60.000 0.00 0.00 0.00 5.92
53 54 0.460987 CTACCCTTCCTCTTGCAGCG 60.461 60.000 0.00 0.00 0.00 5.18
54 55 0.746204 GCTACCCTTCCTCTTGCAGC 60.746 60.000 0.00 0.00 0.00 5.25
55 56 0.107459 GGCTACCCTTCCTCTTGCAG 60.107 60.000 0.00 0.00 0.00 4.41
56 57 1.899437 CGGCTACCCTTCCTCTTGCA 61.899 60.000 0.00 0.00 0.00 4.08
57 58 1.153349 CGGCTACCCTTCCTCTTGC 60.153 63.158 0.00 0.00 0.00 4.01
58 59 1.265454 ACCGGCTACCCTTCCTCTTG 61.265 60.000 0.00 0.00 0.00 3.02
59 60 1.080538 ACCGGCTACCCTTCCTCTT 59.919 57.895 0.00 0.00 0.00 2.85
60 61 1.686110 CACCGGCTACCCTTCCTCT 60.686 63.158 0.00 0.00 0.00 3.69
61 62 1.957765 GACACCGGCTACCCTTCCTC 61.958 65.000 0.00 0.00 0.00 3.71
62 63 1.988406 GACACCGGCTACCCTTCCT 60.988 63.158 0.00 0.00 0.00 3.36
63 64 2.582978 GACACCGGCTACCCTTCC 59.417 66.667 0.00 0.00 0.00 3.46
64 65 2.183555 CGACACCGGCTACCCTTC 59.816 66.667 0.00 0.00 0.00 3.46
65 66 2.602568 ACGACACCGGCTACCCTT 60.603 61.111 0.00 0.00 40.78 3.95
66 67 3.379445 CACGACACCGGCTACCCT 61.379 66.667 0.00 0.00 40.78 4.34
67 68 4.446413 CCACGACACCGGCTACCC 62.446 72.222 0.00 0.00 40.78 3.69
68 69 2.720358 AAACCACGACACCGGCTACC 62.720 60.000 0.00 0.00 40.78 3.18
69 70 0.881600 AAAACCACGACACCGGCTAC 60.882 55.000 0.00 0.00 40.78 3.58
70 71 0.881159 CAAAACCACGACACCGGCTA 60.881 55.000 0.00 0.00 40.78 3.93
71 72 2.184167 CAAAACCACGACACCGGCT 61.184 57.895 0.00 0.00 40.78 5.52
72 73 2.330041 CAAAACCACGACACCGGC 59.670 61.111 0.00 0.00 40.78 6.13
73 74 1.090625 TGACAAAACCACGACACCGG 61.091 55.000 0.00 0.00 40.78 5.28
74 75 0.941542 ATGACAAAACCACGACACCG 59.058 50.000 0.00 0.00 42.50 4.94
75 76 1.001815 CCATGACAAAACCACGACACC 60.002 52.381 0.00 0.00 0.00 4.16
76 77 1.599419 GCCATGACAAAACCACGACAC 60.599 52.381 0.00 0.00 0.00 3.67
77 78 0.665835 GCCATGACAAAACCACGACA 59.334 50.000 0.00 0.00 0.00 4.35
78 79 0.665835 TGCCATGACAAAACCACGAC 59.334 50.000 0.00 0.00 0.00 4.34
79 80 0.950836 CTGCCATGACAAAACCACGA 59.049 50.000 0.00 0.00 0.00 4.35
80 81 0.950836 TCTGCCATGACAAAACCACG 59.049 50.000 0.00 0.00 0.00 4.94
81 82 2.297033 ACATCTGCCATGACAAAACCAC 59.703 45.455 0.00 0.00 0.00 4.16
82 83 2.557924 GACATCTGCCATGACAAAACCA 59.442 45.455 0.00 0.00 0.00 3.67
83 84 2.094545 GGACATCTGCCATGACAAAACC 60.095 50.000 0.00 0.00 0.00 3.27
84 85 2.821969 AGGACATCTGCCATGACAAAAC 59.178 45.455 0.00 0.00 0.00 2.43
85 86 3.159213 AGGACATCTGCCATGACAAAA 57.841 42.857 0.00 0.00 0.00 2.44
86 87 2.885135 AGGACATCTGCCATGACAAA 57.115 45.000 0.00 0.00 0.00 2.83
87 88 2.840038 ACTAGGACATCTGCCATGACAA 59.160 45.455 0.00 0.00 0.00 3.18
88 89 2.169144 CACTAGGACATCTGCCATGACA 59.831 50.000 0.00 0.00 0.00 3.58
89 90 2.432146 TCACTAGGACATCTGCCATGAC 59.568 50.000 0.00 0.00 0.00 3.06
90 91 2.750814 TCACTAGGACATCTGCCATGA 58.249 47.619 0.00 0.00 0.00 3.07
91 92 3.548745 TTCACTAGGACATCTGCCATG 57.451 47.619 0.00 0.00 0.00 3.66
92 93 3.118112 CCTTTCACTAGGACATCTGCCAT 60.118 47.826 0.00 0.00 37.50 4.40
93 94 2.237143 CCTTTCACTAGGACATCTGCCA 59.763 50.000 0.00 0.00 37.50 4.92
94 95 2.501723 TCCTTTCACTAGGACATCTGCC 59.498 50.000 0.00 0.00 39.40 4.85
95 96 3.895232 TCCTTTCACTAGGACATCTGC 57.105 47.619 0.00 0.00 39.40 4.26
102 103 4.458295 CACGACTAAGTCCTTTCACTAGGA 59.542 45.833 0.00 0.00 42.02 2.94
103 104 4.380655 CCACGACTAAGTCCTTTCACTAGG 60.381 50.000 0.00 0.00 36.59 3.02
104 105 4.458295 TCCACGACTAAGTCCTTTCACTAG 59.542 45.833 0.00 0.00 0.00 2.57
105 106 4.401022 TCCACGACTAAGTCCTTTCACTA 58.599 43.478 0.00 0.00 0.00 2.74
106 107 3.228453 TCCACGACTAAGTCCTTTCACT 58.772 45.455 0.00 0.00 0.00 3.41
107 108 3.576648 CTCCACGACTAAGTCCTTTCAC 58.423 50.000 0.00 0.00 0.00 3.18
108 109 2.029290 GCTCCACGACTAAGTCCTTTCA 60.029 50.000 0.00 0.00 0.00 2.69
109 110 2.608268 GCTCCACGACTAAGTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
110 111 1.275573 GGCTCCACGACTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
111 112 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
112 113 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
113 114 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
114 115 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
115 116 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
116 117 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
117 118 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
118 119 2.805546 GCGATGGCTCCACGACTA 59.194 61.111 12.62 0.00 35.83 2.59
119 120 4.498520 CGCGATGGCTCCACGACT 62.499 66.667 0.00 0.00 36.88 4.18
120 121 4.492160 TCGCGATGGCTCCACGAC 62.492 66.667 3.71 5.67 36.88 4.34
121 122 4.492160 GTCGCGATGGCTCCACGA 62.492 66.667 14.06 5.77 36.88 4.35
126 127 3.420214 TAACCCGTCGCGATGGCTC 62.420 63.158 36.71 12.65 36.15 4.70
127 128 3.426117 CTAACCCGTCGCGATGGCT 62.426 63.158 36.71 27.65 36.15 4.75
128 129 2.960129 CTAACCCGTCGCGATGGC 60.960 66.667 36.71 13.43 36.15 4.40
129 130 2.901051 AAGCTAACCCGTCGCGATGG 62.901 60.000 35.49 35.49 37.23 3.51
130 131 0.248743 TAAGCTAACCCGTCGCGATG 60.249 55.000 21.42 21.42 0.00 3.84
131 132 0.457035 TTAAGCTAACCCGTCGCGAT 59.543 50.000 14.06 0.00 0.00 4.58
132 133 0.243365 TTTAAGCTAACCCGTCGCGA 59.757 50.000 3.71 3.71 0.00 5.87
133 134 0.643820 CTTTAAGCTAACCCGTCGCG 59.356 55.000 0.00 0.00 0.00 5.87
134 135 1.004595 CCTTTAAGCTAACCCGTCGC 58.995 55.000 0.00 0.00 0.00 5.19
135 136 1.648504 CCCTTTAAGCTAACCCGTCG 58.351 55.000 0.00 0.00 0.00 5.12
136 137 1.280133 ACCCCTTTAAGCTAACCCGTC 59.720 52.381 0.00 0.00 0.00 4.79
137 138 1.365293 ACCCCTTTAAGCTAACCCGT 58.635 50.000 0.00 0.00 0.00 5.28
138 139 2.502142 AACCCCTTTAAGCTAACCCG 57.498 50.000 0.00 0.00 0.00 5.28
139 140 4.159135 GCTTTAACCCCTTTAAGCTAACCC 59.841 45.833 0.00 0.00 31.11 4.11
140 141 4.142534 CGCTTTAACCCCTTTAAGCTAACC 60.143 45.833 0.00 0.00 31.11 2.85
141 142 4.142534 CCGCTTTAACCCCTTTAAGCTAAC 60.143 45.833 0.00 0.00 31.11 2.34
142 143 4.011698 CCGCTTTAACCCCTTTAAGCTAA 58.988 43.478 0.00 0.00 31.11 3.09
143 144 3.613030 CCGCTTTAACCCCTTTAAGCTA 58.387 45.455 0.00 0.00 31.11 3.32
144 145 2.443416 CCGCTTTAACCCCTTTAAGCT 58.557 47.619 0.00 0.00 31.11 3.74
145 146 1.475280 CCCGCTTTAACCCCTTTAAGC 59.525 52.381 0.00 0.00 31.11 3.09
146 147 2.751259 GTCCCGCTTTAACCCCTTTAAG 59.249 50.000 0.00 0.00 31.11 1.85
147 148 2.107901 TGTCCCGCTTTAACCCCTTTAA 59.892 45.455 0.00 0.00 0.00 1.52
148 149 1.704070 TGTCCCGCTTTAACCCCTTTA 59.296 47.619 0.00 0.00 0.00 1.85
149 150 0.479378 TGTCCCGCTTTAACCCCTTT 59.521 50.000 0.00 0.00 0.00 3.11
150 151 0.479378 TTGTCCCGCTTTAACCCCTT 59.521 50.000 0.00 0.00 0.00 3.95
151 152 0.479378 TTTGTCCCGCTTTAACCCCT 59.521 50.000 0.00 0.00 0.00 4.79
152 153 0.885879 CTTTGTCCCGCTTTAACCCC 59.114 55.000 0.00 0.00 0.00 4.95
153 154 0.885879 CCTTTGTCCCGCTTTAACCC 59.114 55.000 0.00 0.00 0.00 4.11
154 155 1.538512 GTCCTTTGTCCCGCTTTAACC 59.461 52.381 0.00 0.00 0.00 2.85
155 156 2.031420 GTGTCCTTTGTCCCGCTTTAAC 60.031 50.000 0.00 0.00 0.00 2.01
156 157 2.223745 GTGTCCTTTGTCCCGCTTTAA 58.776 47.619 0.00 0.00 0.00 1.52
157 158 1.141254 TGTGTCCTTTGTCCCGCTTTA 59.859 47.619 0.00 0.00 0.00 1.85
158 159 0.106918 TGTGTCCTTTGTCCCGCTTT 60.107 50.000 0.00 0.00 0.00 3.51
159 160 0.106918 TTGTGTCCTTTGTCCCGCTT 60.107 50.000 0.00 0.00 0.00 4.68
160 161 0.535102 CTTGTGTCCTTTGTCCCGCT 60.535 55.000 0.00 0.00 0.00 5.52
161 162 1.515521 CCTTGTGTCCTTTGTCCCGC 61.516 60.000 0.00 0.00 0.00 6.13
162 163 0.889186 CCCTTGTGTCCTTTGTCCCG 60.889 60.000 0.00 0.00 0.00 5.14
163 164 0.185175 ACCCTTGTGTCCTTTGTCCC 59.815 55.000 0.00 0.00 0.00 4.46
164 165 1.954382 GAACCCTTGTGTCCTTTGTCC 59.046 52.381 0.00 0.00 0.00 4.02
165 166 1.954382 GGAACCCTTGTGTCCTTTGTC 59.046 52.381 0.00 0.00 0.00 3.18
166 167 2.067365 GGAACCCTTGTGTCCTTTGT 57.933 50.000 0.00 0.00 0.00 2.83
181 182 0.613777 AGTCGGAGGTTGATGGGAAC 59.386 55.000 0.00 0.00 0.00 3.62
182 183 0.902531 GAGTCGGAGGTTGATGGGAA 59.097 55.000 0.00 0.00 0.00 3.97
183 184 0.976073 GGAGTCGGAGGTTGATGGGA 60.976 60.000 0.00 0.00 0.00 4.37
248 249 2.124693 GCGAGGCTGAGCTAGGAGT 61.125 63.158 3.72 0.00 0.00 3.85
328 330 1.601903 TCATAATCCAATTCGTGCCGC 59.398 47.619 0.00 0.00 0.00 6.53
345 347 1.747206 GCTATTCACCGGTTGCCTCAT 60.747 52.381 2.97 0.00 0.00 2.90
355 357 0.098552 TGCGCATTTGCTATTCACCG 59.901 50.000 5.66 0.00 39.32 4.94
410 412 6.207417 AGACAGGAATTACAAGTTGGACAATG 59.793 38.462 7.96 0.16 0.00 2.82
415 417 4.518970 GCAAGACAGGAATTACAAGTTGGA 59.481 41.667 7.96 0.00 0.00 3.53
459 461 1.133915 TGGGAAGGTGCTTTTCTCGTT 60.134 47.619 0.00 0.00 0.00 3.85
461 463 1.160137 CTGGGAAGGTGCTTTTCTCG 58.840 55.000 0.00 0.00 0.00 4.04
465 467 0.105504 AAGGCTGGGAAGGTGCTTTT 60.106 50.000 0.00 0.00 0.00 2.27
472 474 1.923356 TTTTGCTAAGGCTGGGAAGG 58.077 50.000 0.00 0.00 39.59 3.46
514 518 2.262423 ATCAGATTAGAAAGGCGCCC 57.738 50.000 26.15 8.19 0.00 6.13
558 562 4.760530 TCTCAGTTGCAGGCAGTTATAT 57.239 40.909 0.00 0.00 0.00 0.86
559 563 4.760530 ATCTCAGTTGCAGGCAGTTATA 57.239 40.909 0.00 0.00 0.00 0.98
560 564 3.641434 ATCTCAGTTGCAGGCAGTTAT 57.359 42.857 0.00 0.00 0.00 1.89
561 565 3.423539 AATCTCAGTTGCAGGCAGTTA 57.576 42.857 0.00 0.00 0.00 2.24
654 659 4.209866 ATCCCAGATTGCGCCCCC 62.210 66.667 4.18 0.00 0.00 5.40
658 663 1.089481 TTGTCGATCCCAGATTGCGC 61.089 55.000 0.00 0.00 0.00 6.09
760 767 1.338020 CTTGCCTTTGGTCTTGTCACC 59.662 52.381 0.00 0.00 36.90 4.02
778 785 8.272889 GGAACACCTTTAGGAATAGGATAACTT 58.727 37.037 2.06 0.00 38.94 2.66
786 793 4.482952 ACGGGAACACCTTTAGGAATAG 57.517 45.455 2.06 0.00 38.94 1.73
950 967 3.340789 GACTGTTGGTCCGTTGCC 58.659 61.111 0.00 0.00 38.93 4.52
1157 1175 0.380024 GTAAGGCGAGACGAGGTACC 59.620 60.000 2.73 2.73 0.00 3.34
1243 1274 2.264480 CCGATCACCTTCACCGCA 59.736 61.111 0.00 0.00 0.00 5.69
1260 1291 0.647410 CCTGCACATCAACGATCGAC 59.353 55.000 24.34 1.04 0.00 4.20
1498 1529 0.802607 GAGTACGTAGCAGCAGCACC 60.803 60.000 3.17 0.00 45.49 5.01
1499 1530 0.802607 GGAGTACGTAGCAGCAGCAC 60.803 60.000 3.17 0.00 45.49 4.40
1507 1538 3.057736 TCAACACTGAAGGAGTACGTAGC 60.058 47.826 0.00 0.00 31.73 3.58
1519 1550 6.978338 ACTAGAAACGTATCTCAACACTGAA 58.022 36.000 0.00 0.00 0.00 3.02
1527 1558 4.335874 GCCTGAGACTAGAAACGTATCTCA 59.664 45.833 0.00 1.66 42.63 3.27
1532 1563 2.161012 CGTGCCTGAGACTAGAAACGTA 59.839 50.000 0.00 0.00 0.00 3.57
1533 1564 1.068472 CGTGCCTGAGACTAGAAACGT 60.068 52.381 0.00 0.00 0.00 3.99
1534 1565 1.618861 CGTGCCTGAGACTAGAAACG 58.381 55.000 0.00 0.00 0.00 3.60
1535 1566 1.336887 TGCGTGCCTGAGACTAGAAAC 60.337 52.381 0.00 0.00 0.00 2.78
1536 1567 0.966179 TGCGTGCCTGAGACTAGAAA 59.034 50.000 0.00 0.00 0.00 2.52
1537 1568 1.134995 CATGCGTGCCTGAGACTAGAA 60.135 52.381 0.00 0.00 0.00 2.10
1540 1571 0.894835 TTCATGCGTGCCTGAGACTA 59.105 50.000 0.00 0.00 0.00 2.59
1541 1572 0.671781 GTTCATGCGTGCCTGAGACT 60.672 55.000 0.00 0.00 0.00 3.24
1542 1573 1.790387 GTTCATGCGTGCCTGAGAC 59.210 57.895 0.00 0.14 0.00 3.36
1549 1580 1.011968 TGGAGTACGTTCATGCGTGC 61.012 55.000 8.41 7.15 45.33 5.34
1560 1591 1.544691 AGGTAAGCACAGTGGAGTACG 59.455 52.381 1.84 0.00 0.00 3.67
1562 1593 4.222145 CCTAAAGGTAAGCACAGTGGAGTA 59.778 45.833 1.84 0.00 0.00 2.59
1585 1616 1.228459 AAAAGGACCAAGGCCGGAC 60.228 57.895 5.05 0.00 0.00 4.79
1589 1620 1.128200 AAACCAAAAGGACCAAGGCC 58.872 50.000 0.00 0.00 0.00 5.19
1596 1627 3.826729 AGATACCTGCAAACCAAAAGGAC 59.173 43.478 0.00 0.00 33.78 3.85
1598 1629 3.573967 ACAGATACCTGCAAACCAAAAGG 59.426 43.478 0.00 0.00 44.16 3.11
1643 1675 1.026718 GGAATGGAACCGTGGAGCAG 61.027 60.000 0.00 0.00 0.00 4.24
1772 1804 6.807230 CCTGTGATATTACCTCGCTATTGTAC 59.193 42.308 0.00 0.00 0.00 2.90
1776 1808 5.279506 CCACCTGTGATATTACCTCGCTATT 60.280 44.000 0.00 0.00 0.00 1.73
1778 1810 3.572682 CCACCTGTGATATTACCTCGCTA 59.427 47.826 0.00 0.00 0.00 4.26
1779 1811 2.365617 CCACCTGTGATATTACCTCGCT 59.634 50.000 0.00 0.00 0.00 4.93
1780 1812 2.102588 ACCACCTGTGATATTACCTCGC 59.897 50.000 0.00 0.00 0.00 5.03
3253 3294 5.276868 CGTGCAAATACAGTGCTAATCCTAC 60.277 44.000 0.00 0.00 42.69 3.18
3379 3420 8.278408 CACAGTGCTTAACTACATATGCTATTG 58.722 37.037 1.58 0.00 36.83 1.90
3380 3421 7.041780 GCACAGTGCTTAACTACATATGCTATT 60.042 37.037 18.92 0.00 40.96 1.73
3381 3422 6.425114 GCACAGTGCTTAACTACATATGCTAT 59.575 38.462 18.92 0.00 40.96 2.97
3394 3435 0.667993 GCCAAGTGCACAGTGCTTAA 59.332 50.000 25.83 3.29 45.31 1.85
3432 3473 2.124903 CACGTACTGAACAGTGACCAC 58.875 52.381 16.37 6.62 42.52 4.16
3442 3483 7.479897 TGTTAATTAAGTTGCACGTACTGAA 57.520 32.000 0.00 0.00 0.00 3.02
3581 3622 1.201647 CACGGTGGTACTACAGTGGAG 59.798 57.143 27.08 0.00 41.19 3.86
3582 3623 1.250328 CACGGTGGTACTACAGTGGA 58.750 55.000 27.08 0.00 41.19 4.02
3583 3624 0.389426 GCACGGTGGTACTACAGTGG 60.389 60.000 32.17 19.70 43.79 4.00
3584 3625 0.315886 TGCACGGTGGTACTACAGTG 59.684 55.000 29.26 29.26 45.51 3.66
3585 3626 0.601558 CTGCACGGTGGTACTACAGT 59.398 55.000 11.80 10.51 0.00 3.55
3586 3627 0.601558 ACTGCACGGTGGTACTACAG 59.398 55.000 11.80 9.81 0.00 2.74
3587 3628 1.814394 CTACTGCACGGTGGTACTACA 59.186 52.381 11.80 0.00 0.00 2.74
3588 3629 1.815003 ACTACTGCACGGTGGTACTAC 59.185 52.381 10.60 0.00 0.00 2.73
3589 3630 2.205022 ACTACTGCACGGTGGTACTA 57.795 50.000 10.60 0.00 0.00 1.82
3591 3632 1.815003 ACTACTACTGCACGGTGGTAC 59.185 52.381 10.60 0.00 33.21 3.34
3592 3633 2.205022 ACTACTACTGCACGGTGGTA 57.795 50.000 10.60 5.80 33.21 3.25
3593 3634 1.271656 GAACTACTACTGCACGGTGGT 59.728 52.381 10.60 3.99 35.24 4.16
3594 3635 1.544691 AGAACTACTACTGCACGGTGG 59.455 52.381 10.60 0.00 0.00 4.61
3650 3692 1.005630 GCGAACAGAGTGACCTGCT 60.006 57.895 0.00 0.00 37.68 4.24
3724 3766 1.528542 CGCCTATCCAGGTCCTCGA 60.529 63.158 0.00 0.00 44.68 4.04
4003 4066 2.161012 CCAAATATGCATGAGGCTAGCG 59.839 50.000 10.16 0.00 45.15 4.26
4004 4067 2.094854 GCCAAATATGCATGAGGCTAGC 60.095 50.000 19.76 6.04 45.15 3.42
4007 4070 1.335145 GGCCAAATATGCATGAGGCT 58.665 50.000 23.53 0.00 45.15 4.58
4009 4072 1.001048 CACGGCCAAATATGCATGAGG 60.001 52.381 10.16 6.81 0.00 3.86
4050 4127 1.962807 TGTCCCTCTGCATTTTTGTGG 59.037 47.619 0.00 0.00 0.00 4.17
4087 4164 1.810030 GTTCCTCGCCGCGAATTCT 60.810 57.895 17.53 0.00 34.74 2.40
4316 4393 3.915437 AAGTCCAACCGTAATGCTTTG 57.085 42.857 0.00 0.00 0.00 2.77
4322 4399 4.161001 CCTACACCTAAGTCCAACCGTAAT 59.839 45.833 0.00 0.00 0.00 1.89
4332 4409 4.141688 CCCTTCCATTCCTACACCTAAGTC 60.142 50.000 0.00 0.00 0.00 3.01
4333 4410 3.780850 CCCTTCCATTCCTACACCTAAGT 59.219 47.826 0.00 0.00 0.00 2.24
4334 4411 3.780850 ACCCTTCCATTCCTACACCTAAG 59.219 47.826 0.00 0.00 0.00 2.18
4335 4412 3.810623 ACCCTTCCATTCCTACACCTAA 58.189 45.455 0.00 0.00 0.00 2.69
4336 4413 3.502051 ACCCTTCCATTCCTACACCTA 57.498 47.619 0.00 0.00 0.00 3.08
4381 4458 1.204704 TCTCGGTCACCTGCATAGTTG 59.795 52.381 0.00 0.00 0.00 3.16
4397 4477 1.107114 AGTACTCAGCCACCATCTCG 58.893 55.000 0.00 0.00 0.00 4.04
4409 4489 0.323629 CCTTTGGGGCGAAGTACTCA 59.676 55.000 0.00 0.00 0.00 3.41
4460 4540 2.633481 GGTCACAAGAAGGTGTAGGTCT 59.367 50.000 0.00 0.00 39.76 3.85
4549 4629 5.643348 TGATTAATGATACGCAAGCCCTATG 59.357 40.000 0.00 0.00 45.62 2.23
4589 4672 1.670811 GGAACGCCACAATATCCTGTG 59.329 52.381 1.18 1.18 45.24 3.66
4686 4771 5.236282 GTTAAGTACTTGAGGGACCAACTC 58.764 45.833 18.56 0.00 35.55 3.01
4782 4867 1.308998 GTGGCTTGTTGCACAGTACT 58.691 50.000 0.00 0.00 45.15 2.73
4869 4954 4.643334 TCTTCTGCATTTTCCTGGATGATG 59.357 41.667 12.83 12.83 0.00 3.07
4949 5034 6.483307 ACATTCATTCCGTGTATACCTTGATG 59.517 38.462 0.00 0.00 0.00 3.07
5008 5093 8.867097 GTGTATCCTTCCATAGTTCCATACTTA 58.133 37.037 0.00 0.00 38.33 2.24
5168 5253 6.123651 ACAGTTATTTCACTTGTTACACCCA 58.876 36.000 0.00 0.00 0.00 4.51
5178 5263 8.495949 CGAGTACAATCAACAGTTATTTCACTT 58.504 33.333 0.00 0.00 0.00 3.16
5239 5324 4.563337 ATCGTTAGTAGCAGCGTTATCA 57.437 40.909 0.00 0.00 0.00 2.15
5247 5332 3.426426 GGCCTCGATATCGTTAGTAGCAG 60.426 52.174 23.61 11.38 40.80 4.24
5362 5480 5.107109 TGAAATTGTCGACAACCTTCATG 57.893 39.130 33.12 0.00 36.72 3.07
5364 5482 4.819088 TCATGAAATTGTCGACAACCTTCA 59.181 37.500 35.76 35.76 41.34 3.02
5365 5483 5.356882 TCATGAAATTGTCGACAACCTTC 57.643 39.130 31.87 30.88 38.86 3.46
5400 5518 5.739752 TTTGATGAAATGGAGCTGATACG 57.260 39.130 0.00 0.00 0.00 3.06
5427 5549 6.739112 ACTCTTGGATGAAACTGCTTTAAAC 58.261 36.000 0.00 0.00 0.00 2.01
5563 5857 1.403323 GCAAGCCAAATGAGGTAGCTC 59.597 52.381 15.12 15.12 32.19 4.09
5611 5905 0.957888 GTTTGGGACTGCTCTGCTCC 60.958 60.000 0.00 0.00 0.00 4.70
5622 5916 4.649088 AAACTTAGTGCTTGTTTGGGAC 57.351 40.909 0.00 0.00 33.36 4.46
5625 5919 6.734137 TCATGTAAACTTAGTGCTTGTTTGG 58.266 36.000 0.00 0.00 35.77 3.28
5784 6078 5.339200 CCACTCACTAATTGTTATGGGAGGT 60.339 44.000 0.00 0.00 0.00 3.85
5805 6099 0.517316 GTCCAATGCAAGTCGTCCAC 59.483 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.