Multiple sequence alignment - TraesCS3D01G293600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G293600 chr3D 100.000 2534 0 0 1 2534 403942493 403939960 0.000000e+00 4680.0
1 TraesCS3D01G293600 chr3A 90.463 1101 56 23 754 1829 526514528 526513452 0.000000e+00 1406.0
2 TraesCS3D01G293600 chr3A 86.435 317 35 3 1822 2138 714735556 714735864 8.680000e-90 340.0
3 TraesCS3D01G293600 chr3A 95.732 164 5 1 2373 2534 526513465 526513302 1.930000e-66 263.0
4 TraesCS3D01G293600 chr3A 83.582 134 19 3 495 625 526514692 526514559 3.420000e-24 122.0
5 TraesCS3D01G293600 chr3A 86.813 91 12 0 606 696 291178803 291178713 4.460000e-18 102.0
6 TraesCS3D01G293600 chr3A 84.270 89 13 1 5 92 526516133 526516045 4.490000e-13 86.1
7 TraesCS3D01G293600 chr3B 89.514 925 59 15 732 1640 530243627 530242725 0.000000e+00 1136.0
8 TraesCS3D01G293600 chr3B 79.457 516 94 8 1857 2370 186753492 186752987 3.100000e-94 355.0
9 TraesCS3D01G293600 chr3B 85.938 192 22 2 109 299 772893771 772893584 1.540000e-47 200.0
10 TraesCS3D01G293600 chr1D 81.375 349 62 3 2026 2373 315969825 315970171 5.340000e-72 281.0
11 TraesCS3D01G293600 chr1D 89.773 88 8 1 610 696 422309119 422309032 7.410000e-21 111.0
12 TraesCS3D01G293600 chr4B 76.876 493 106 4 1857 2349 593400569 593400085 3.210000e-69 272.0
13 TraesCS3D01G293600 chr4B 86.096 187 19 2 109 295 488890027 488890206 7.150000e-46 195.0
14 TraesCS3D01G293600 chr6D 89.231 195 16 3 109 300 458145656 458145848 3.260000e-59 239.0
15 TraesCS3D01G293600 chr6D 88.718 195 16 4 109 300 458224850 458225041 1.520000e-57 233.0
16 TraesCS3D01G293600 chr6D 88.265 196 17 4 109 300 458171863 458172056 1.960000e-56 230.0
17 TraesCS3D01G293600 chr6D 88.205 195 18 3 109 300 458295823 458296015 7.050000e-56 228.0
18 TraesCS3D01G293600 chr6D 91.463 82 7 0 612 693 232764526 232764445 2.060000e-21 113.0
19 TraesCS3D01G293600 chr6D 90.476 84 8 0 613 696 436376025 436375942 7.410000e-21 111.0
20 TraesCS3D01G293600 chr6D 78.307 189 25 8 337 518 419440762 419440583 9.590000e-20 108.0
21 TraesCS3D01G293600 chr4D 89.349 169 13 3 109 277 396934779 396934942 9.190000e-50 207.0
22 TraesCS3D01G293600 chr6B 85.938 192 20 5 109 299 42673451 42673636 5.530000e-47 198.0
23 TraesCS3D01G293600 chrUn 84.184 196 25 3 106 299 67439941 67440132 4.300000e-43 185.0
24 TraesCS3D01G293600 chr1A 75.350 357 87 1 1992 2348 587803532 587803177 1.210000e-38 171.0
25 TraesCS3D01G293600 chr1A 100.000 28 0 0 296 323 18786068 18786095 5.000000e-03 52.8
26 TraesCS3D01G293600 chr1A 88.636 44 4 1 296 339 18868011 18868053 5.000000e-03 52.8
27 TraesCS3D01G293600 chr1A 100.000 28 0 0 296 323 18950535 18950562 5.000000e-03 52.8
28 TraesCS3D01G293600 chr1A 100.000 28 0 0 296 323 19047325 19047352 5.000000e-03 52.8
29 TraesCS3D01G293600 chr5D 83.041 171 26 1 2156 2323 428834046 428833876 4.370000e-33 152.0
30 TraesCS3D01G293600 chr5D 91.358 81 7 0 613 693 370119601 370119521 7.410000e-21 111.0
31 TraesCS3D01G293600 chr2D 92.135 89 5 2 605 693 398306049 398306135 9.520000e-25 124.0
32 TraesCS3D01G293600 chr2D 91.358 81 7 0 613 693 635784178 635784098 7.410000e-21 111.0
33 TraesCS3D01G293600 chr7D 92.857 84 6 0 613 696 271458331 271458248 3.420000e-24 122.0
34 TraesCS3D01G293600 chr6A 79.630 162 28 5 383 543 562756363 562756206 7.410000e-21 111.0
35 TraesCS3D01G293600 chr6A 89.286 84 9 0 613 696 502675048 502674965 3.450000e-19 106.0
36 TraesCS3D01G293600 chr6A 81.967 122 11 5 161 280 603931277 603931389 2.680000e-15 93.5
37 TraesCS3D01G293600 chr5B 83.065 124 11 7 155 276 633679509 633679624 1.240000e-18 104.0
38 TraesCS3D01G293600 chr5B 92.105 38 1 1 296 333 608557364 608557329 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G293600 chr3D 403939960 403942493 2533 True 4680.000 4680 100.00000 1 2534 1 chr3D.!!$R1 2533
1 TraesCS3D01G293600 chr3A 526513302 526516133 2831 True 469.275 1406 88.51175 5 2534 4 chr3A.!!$R2 2529
2 TraesCS3D01G293600 chr3B 530242725 530243627 902 True 1136.000 1136 89.51400 732 1640 1 chr3B.!!$R2 908
3 TraesCS3D01G293600 chr3B 186752987 186753492 505 True 355.000 355 79.45700 1857 2370 1 chr3B.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 1137 0.035439 TGCCTGCCTTACTAAGCACC 60.035 55.0 0.0 0.0 34.68 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 3001 0.106967 TGCACCACCAAAGCAGTACA 60.107 50.0 0.0 0.0 33.75 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.184322 CACCGGTGCTAGATGCGT 59.816 61.111 24.02 0.00 46.63 5.24
36 37 1.447838 CACCGGTGCTAGATGCGTT 60.448 57.895 24.02 0.00 46.63 4.84
39 40 2.703409 GGTGCTAGATGCGTTGCG 59.297 61.111 0.00 0.00 46.63 4.85
51 52 3.449322 TGCGTTGCGTCTTAGAAATTC 57.551 42.857 0.00 0.00 0.00 2.17
56 57 5.389098 GCGTTGCGTCTTAGAAATTCTGTTA 60.389 40.000 5.64 0.00 0.00 2.41
58 59 6.128902 CGTTGCGTCTTAGAAATTCTGTTACT 60.129 38.462 5.64 0.00 0.00 2.24
62 63 6.590677 GCGTCTTAGAAATTCTGTTACTTCCT 59.409 38.462 5.64 0.00 0.00 3.36
63 64 7.412020 GCGTCTTAGAAATTCTGTTACTTCCTG 60.412 40.741 5.64 0.00 0.00 3.86
65 66 9.660180 GTCTTAGAAATTCTGTTACTTCCTGAT 57.340 33.333 5.64 0.00 0.00 2.90
97 107 1.698532 TCACGGGGGTGCTAGTTTTTA 59.301 47.619 0.00 0.00 0.00 1.52
106 116 6.888088 GGGGGTGCTAGTTTTTATTCTTCTTA 59.112 38.462 0.00 0.00 0.00 2.10
110 120 9.989869 GGTGCTAGTTTTTATTCTTCTTATGTC 57.010 33.333 0.00 0.00 0.00 3.06
127 137 9.990360 TTCTTATGTCATAGTTGTAGTTTGTCA 57.010 29.630 0.00 0.00 0.00 3.58
128 138 9.990360 TCTTATGTCATAGTTGTAGTTTGTCAA 57.010 29.630 0.00 0.00 0.00 3.18
130 140 6.854496 TGTCATAGTTGTAGTTTGTCAACC 57.146 37.500 0.00 0.00 43.10 3.77
131 141 5.464057 TGTCATAGTTGTAGTTTGTCAACCG 59.536 40.000 0.00 0.00 43.10 4.44
132 142 4.449743 TCATAGTTGTAGTTTGTCAACCGC 59.550 41.667 0.00 0.00 43.10 5.68
133 143 2.634600 AGTTGTAGTTTGTCAACCGCA 58.365 42.857 0.00 0.00 43.10 5.69
134 144 2.612212 AGTTGTAGTTTGTCAACCGCAG 59.388 45.455 0.00 0.00 43.10 5.18
147 157 2.556287 CGCAGGTTTGGTCGCTTC 59.444 61.111 0.00 0.00 0.00 3.86
148 158 2.556287 GCAGGTTTGGTCGCTTCG 59.444 61.111 0.00 0.00 0.00 3.79
149 159 2.251642 GCAGGTTTGGTCGCTTCGT 61.252 57.895 0.00 0.00 0.00 3.85
151 161 0.661020 CAGGTTTGGTCGCTTCGTTT 59.339 50.000 0.00 0.00 0.00 3.60
152 162 1.064952 CAGGTTTGGTCGCTTCGTTTT 59.935 47.619 0.00 0.00 0.00 2.43
153 163 1.746787 AGGTTTGGTCGCTTCGTTTTT 59.253 42.857 0.00 0.00 0.00 1.94
182 192 3.543680 TTTTCTCGCTTAGGCATAGCT 57.456 42.857 8.83 0.00 38.60 3.32
184 194 3.924918 TTCTCGCTTAGGCATAGCTAG 57.075 47.619 0.00 7.46 38.60 3.42
185 195 1.542030 TCTCGCTTAGGCATAGCTAGC 59.458 52.381 6.62 6.62 38.60 3.42
186 196 1.543802 CTCGCTTAGGCATAGCTAGCT 59.456 52.381 23.12 23.12 38.60 3.32
187 197 1.964223 TCGCTTAGGCATAGCTAGCTT 59.036 47.619 24.88 6.85 38.60 3.74
188 198 2.365617 TCGCTTAGGCATAGCTAGCTTT 59.634 45.455 24.88 12.92 38.60 3.51
189 199 2.478134 CGCTTAGGCATAGCTAGCTTTG 59.522 50.000 24.88 25.29 38.60 2.77
192 202 2.629336 AGGCATAGCTAGCTTTGGTC 57.371 50.000 29.00 18.33 0.00 4.02
193 203 1.839994 AGGCATAGCTAGCTTTGGTCA 59.160 47.619 29.00 10.76 0.00 4.02
194 204 2.441001 AGGCATAGCTAGCTTTGGTCAT 59.559 45.455 29.00 12.50 0.00 3.06
196 206 4.288105 AGGCATAGCTAGCTTTGGTCATAT 59.712 41.667 29.00 11.16 0.00 1.78
198 208 6.157645 AGGCATAGCTAGCTTTGGTCATATAT 59.842 38.462 29.00 9.84 0.00 0.86
199 209 6.259608 GGCATAGCTAGCTTTGGTCATATATG 59.740 42.308 29.00 20.02 0.00 1.78
200 210 7.044181 GCATAGCTAGCTTTGGTCATATATGA 58.956 38.462 29.00 11.49 0.00 2.15
216 226 8.310406 TCATATATGACTTTGCTATTTGTCGG 57.690 34.615 11.49 0.00 32.64 4.79
217 227 3.764885 ATGACTTTGCTATTTGTCGGC 57.235 42.857 0.00 0.00 32.64 5.54
218 228 1.463056 TGACTTTGCTATTTGTCGGCG 59.537 47.619 0.00 0.00 32.64 6.46
219 229 1.463444 GACTTTGCTATTTGTCGGCGT 59.537 47.619 6.85 0.00 0.00 5.68
220 230 1.877443 ACTTTGCTATTTGTCGGCGTT 59.123 42.857 6.85 0.00 0.00 4.84
221 231 2.292292 ACTTTGCTATTTGTCGGCGTTT 59.708 40.909 6.85 0.00 0.00 3.60
223 233 2.323939 TGCTATTTGTCGGCGTTTTG 57.676 45.000 6.85 0.00 0.00 2.44
224 234 1.604755 TGCTATTTGTCGGCGTTTTGT 59.395 42.857 6.85 0.00 0.00 2.83
225 235 1.976045 GCTATTTGTCGGCGTTTTGTG 59.024 47.619 6.85 0.00 0.00 3.33
226 236 2.603652 GCTATTTGTCGGCGTTTTGTGT 60.604 45.455 6.85 0.00 0.00 3.72
227 237 1.833860 ATTTGTCGGCGTTTTGTGTG 58.166 45.000 6.85 0.00 0.00 3.82
229 239 0.179187 TTGTCGGCGTTTTGTGTGTG 60.179 50.000 6.85 0.00 0.00 3.82
230 240 1.937362 GTCGGCGTTTTGTGTGTGC 60.937 57.895 6.85 0.00 0.00 4.57
231 241 3.016203 CGGCGTTTTGTGTGTGCG 61.016 61.111 0.00 0.00 0.00 5.34
232 242 2.101380 GGCGTTTTGTGTGTGCGT 59.899 55.556 0.00 0.00 0.00 5.24
233 243 2.220887 GGCGTTTTGTGTGTGCGTG 61.221 57.895 0.00 0.00 0.00 5.34
234 244 2.844685 GCGTTTTGTGTGTGCGTGC 61.845 57.895 0.00 0.00 0.00 5.34
235 245 2.554947 CGTTTTGTGTGTGCGTGCG 61.555 57.895 0.00 0.00 0.00 5.34
236 246 1.513160 GTTTTGTGTGTGCGTGCGT 60.513 52.632 0.00 0.00 0.00 5.24
237 247 1.512947 TTTTGTGTGTGCGTGCGTG 60.513 52.632 0.00 0.00 0.00 5.34
239 249 2.840955 TTTGTGTGTGCGTGCGTGTG 62.841 55.000 0.00 0.00 0.00 3.82
240 250 3.860125 GTGTGTGCGTGCGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
241 251 3.121676 TGTGTGCGTGCGTGTGTT 61.122 55.556 0.00 0.00 0.00 3.32
243 253 3.919386 TGTGCGTGCGTGTGTTCG 61.919 61.111 0.00 0.00 0.00 3.95
244 254 3.920553 GTGCGTGCGTGTGTTCGT 61.921 61.111 0.00 0.00 0.00 3.85
246 256 2.297195 TGCGTGCGTGTGTTCGTAG 61.297 57.895 0.00 0.00 0.00 3.51
247 257 2.297912 GCGTGCGTGTGTTCGTAGT 61.298 57.895 0.00 0.00 0.00 2.73
248 258 1.481260 CGTGCGTGTGTTCGTAGTG 59.519 57.895 0.00 0.00 0.00 2.74
249 259 0.931202 CGTGCGTGTGTTCGTAGTGA 60.931 55.000 0.00 0.00 0.00 3.41
250 260 1.415374 GTGCGTGTGTTCGTAGTGAT 58.585 50.000 0.00 0.00 0.00 3.06
251 261 1.790623 GTGCGTGTGTTCGTAGTGATT 59.209 47.619 0.00 0.00 0.00 2.57
253 263 2.867368 TGCGTGTGTTCGTAGTGATTTT 59.133 40.909 0.00 0.00 0.00 1.82
254 264 3.215244 GCGTGTGTTCGTAGTGATTTTG 58.785 45.455 0.00 0.00 0.00 2.44
255 265 3.302870 GCGTGTGTTCGTAGTGATTTTGT 60.303 43.478 0.00 0.00 0.00 2.83
257 267 3.966218 GTGTGTTCGTAGTGATTTTGTGC 59.034 43.478 0.00 0.00 0.00 4.57
258 268 3.623510 TGTGTTCGTAGTGATTTTGTGCA 59.376 39.130 0.00 0.00 0.00 4.57
259 269 4.274705 TGTGTTCGTAGTGATTTTGTGCAT 59.725 37.500 0.00 0.00 0.00 3.96
260 270 5.212194 GTGTTCGTAGTGATTTTGTGCATT 58.788 37.500 0.00 0.00 0.00 3.56
261 271 5.339611 GTGTTCGTAGTGATTTTGTGCATTC 59.660 40.000 0.00 0.00 0.00 2.67
263 273 6.425417 TGTTCGTAGTGATTTTGTGCATTCTA 59.575 34.615 0.00 0.00 0.00 2.10
264 274 6.403333 TCGTAGTGATTTTGTGCATTCTAC 57.597 37.500 0.00 0.00 0.00 2.59
265 275 5.350365 TCGTAGTGATTTTGTGCATTCTACC 59.650 40.000 0.00 0.00 0.00 3.18
267 277 6.533723 CGTAGTGATTTTGTGCATTCTACCTA 59.466 38.462 0.00 0.00 0.00 3.08
268 278 7.224753 CGTAGTGATTTTGTGCATTCTACCTAT 59.775 37.037 0.00 0.00 0.00 2.57
270 280 5.973565 GTGATTTTGTGCATTCTACCTATGC 59.026 40.000 0.00 0.00 46.63 3.14
284 294 3.516981 CCTATGCAGAGGTCGGATATG 57.483 52.381 19.61 0.00 0.00 1.78
285 295 2.828520 CCTATGCAGAGGTCGGATATGT 59.171 50.000 19.61 0.00 0.00 2.29
286 296 2.827800 ATGCAGAGGTCGGATATGTG 57.172 50.000 0.00 0.00 0.00 3.21
287 297 0.104855 TGCAGAGGTCGGATATGTGC 59.895 55.000 7.35 7.35 0.00 4.57
290 655 2.035961 GCAGAGGTCGGATATGTGCTTA 59.964 50.000 7.12 0.00 0.00 3.09
294 659 4.345257 AGAGGTCGGATATGTGCTTATTGT 59.655 41.667 0.00 0.00 0.00 2.71
303 668 8.559536 CGGATATGTGCTTATTGTATTTTGAGT 58.440 33.333 0.00 0.00 0.00 3.41
304 669 9.884465 GGATATGTGCTTATTGTATTTTGAGTC 57.116 33.333 0.00 0.00 0.00 3.36
318 683 9.308000 TGTATTTTGAGTCAATAAAATCCACCT 57.692 29.630 6.36 0.00 37.57 4.00
323 688 9.974980 TTTGAGTCAATAAAATCCACCTTTTAC 57.025 29.630 6.36 0.00 34.39 2.01
325 690 7.094549 TGAGTCAATAAAATCCACCTTTTACCG 60.095 37.037 0.00 0.00 34.39 4.02
352 1042 7.781324 AAAAATATCAATGAAGACACTGGGT 57.219 32.000 0.00 0.00 0.00 4.51
353 1043 7.781324 AAAATATCAATGAAGACACTGGGTT 57.219 32.000 0.00 0.00 0.00 4.11
354 1044 7.781324 AAATATCAATGAAGACACTGGGTTT 57.219 32.000 0.00 0.00 0.00 3.27
356 1046 8.877864 AATATCAATGAAGACACTGGGTTTAA 57.122 30.769 0.00 0.00 0.00 1.52
357 1047 6.824305 ATCAATGAAGACACTGGGTTTAAG 57.176 37.500 0.00 0.00 0.00 1.85
359 1049 3.569194 TGAAGACACTGGGTTTAAGCA 57.431 42.857 0.00 0.00 0.00 3.91
360 1050 4.098914 TGAAGACACTGGGTTTAAGCAT 57.901 40.909 0.00 0.00 0.00 3.79
361 1051 4.469657 TGAAGACACTGGGTTTAAGCATT 58.530 39.130 0.00 0.00 0.00 3.56
362 1052 4.518970 TGAAGACACTGGGTTTAAGCATTC 59.481 41.667 0.00 0.00 0.00 2.67
363 1053 3.074412 AGACACTGGGTTTAAGCATTCG 58.926 45.455 0.00 0.00 0.00 3.34
364 1054 2.812011 GACACTGGGTTTAAGCATTCGT 59.188 45.455 0.00 0.00 0.00 3.85
366 1056 2.095263 CACTGGGTTTAAGCATTCGTGG 60.095 50.000 0.00 0.00 0.00 4.94
367 1057 0.885196 TGGGTTTAAGCATTCGTGGC 59.115 50.000 0.00 0.00 0.00 5.01
368 1058 1.173913 GGGTTTAAGCATTCGTGGCT 58.826 50.000 0.00 0.00 45.15 4.75
373 1063 3.271014 AGCATTCGTGGCTTGCAG 58.729 55.556 0.00 0.00 38.81 4.41
375 1065 2.879907 CATTCGTGGCTTGCAGGG 59.120 61.111 0.00 0.00 0.00 4.45
390 1080 2.293170 GCAGGGAGCAGTTATTTCTCC 58.707 52.381 0.00 0.00 44.28 3.71
394 1084 2.827652 GGAGCAGTTATTTCTCCCGAG 58.172 52.381 0.00 0.00 40.29 4.63
396 1086 1.555075 AGCAGTTATTTCTCCCGAGCA 59.445 47.619 0.00 0.00 0.00 4.26
397 1087 1.666189 GCAGTTATTTCTCCCGAGCAC 59.334 52.381 0.00 0.00 0.00 4.40
398 1088 2.280628 CAGTTATTTCTCCCGAGCACC 58.719 52.381 0.00 0.00 0.00 5.01
399 1089 1.134788 AGTTATTTCTCCCGAGCACCG 60.135 52.381 0.00 0.00 38.18 4.94
418 1108 1.153429 GCTAGCACCGGACGGAAAT 60.153 57.895 18.80 4.79 38.96 2.17
419 1109 0.103572 GCTAGCACCGGACGGAAATA 59.896 55.000 18.80 5.69 38.96 1.40
421 1111 2.805657 GCTAGCACCGGACGGAAATATT 60.806 50.000 18.80 0.00 38.96 1.28
422 1112 2.413310 AGCACCGGACGGAAATATTT 57.587 45.000 18.80 0.00 38.96 1.40
423 1113 2.014128 AGCACCGGACGGAAATATTTG 58.986 47.619 18.80 4.35 38.96 2.32
424 1114 1.533129 GCACCGGACGGAAATATTTGC 60.533 52.381 18.80 7.59 38.96 3.68
425 1115 2.014128 CACCGGACGGAAATATTTGCT 58.986 47.619 18.80 5.04 38.96 3.91
426 1116 2.422127 CACCGGACGGAAATATTTGCTT 59.578 45.455 18.80 8.17 38.96 3.91
427 1117 2.681344 ACCGGACGGAAATATTTGCTTC 59.319 45.455 18.80 15.78 38.96 3.86
428 1118 2.943033 CCGGACGGAAATATTTGCTTCT 59.057 45.455 20.43 4.25 37.50 2.85
429 1119 3.242739 CCGGACGGAAATATTTGCTTCTG 60.243 47.826 21.15 21.15 37.50 3.02
430 1120 3.695816 GGACGGAAATATTTGCTTCTGC 58.304 45.455 20.43 6.47 40.20 4.26
431 1121 3.489229 GGACGGAAATATTTGCTTCTGCC 60.489 47.826 20.43 10.21 38.71 4.85
433 1123 3.129287 ACGGAAATATTTGCTTCTGCCTG 59.871 43.478 16.43 3.02 38.71 4.85
434 1124 3.451526 GGAAATATTTGCTTCTGCCTGC 58.548 45.455 12.05 0.00 38.71 4.85
435 1125 3.451526 GAAATATTTGCTTCTGCCTGCC 58.548 45.455 5.17 0.00 38.71 4.85
436 1126 2.449137 ATATTTGCTTCTGCCTGCCT 57.551 45.000 0.00 0.00 38.71 4.75
437 1127 2.220653 TATTTGCTTCTGCCTGCCTT 57.779 45.000 0.00 0.00 38.71 4.35
438 1128 2.220653 ATTTGCTTCTGCCTGCCTTA 57.779 45.000 0.00 0.00 38.71 2.69
440 1130 0.401738 TTGCTTCTGCCTGCCTTACT 59.598 50.000 0.00 0.00 38.71 2.24
442 1132 1.628340 TGCTTCTGCCTGCCTTACTAA 59.372 47.619 0.00 0.00 38.71 2.24
443 1133 2.284190 GCTTCTGCCTGCCTTACTAAG 58.716 52.381 0.00 0.00 0.00 2.18
444 1134 2.284190 CTTCTGCCTGCCTTACTAAGC 58.716 52.381 0.00 0.00 0.00 3.09
445 1135 1.275666 TCTGCCTGCCTTACTAAGCA 58.724 50.000 0.00 0.00 37.46 3.91
446 1136 1.066143 TCTGCCTGCCTTACTAAGCAC 60.066 52.381 0.00 0.00 34.68 4.40
447 1137 0.035439 TGCCTGCCTTACTAAGCACC 60.035 55.000 0.00 0.00 34.68 5.01
491 1272 3.581265 AACCCGGGTTTTCTTTACTCA 57.419 42.857 33.74 0.00 34.22 3.41
492 1273 3.136009 ACCCGGGTTTTCTTTACTCAG 57.864 47.619 24.16 0.00 0.00 3.35
493 1274 2.224695 ACCCGGGTTTTCTTTACTCAGG 60.225 50.000 24.16 0.00 0.00 3.86
494 1275 1.810755 CCGGGTTTTCTTTACTCAGGC 59.189 52.381 0.00 0.00 0.00 4.85
495 1276 2.500229 CGGGTTTTCTTTACTCAGGCA 58.500 47.619 0.00 0.00 0.00 4.75
496 1277 2.225727 CGGGTTTTCTTTACTCAGGCAC 59.774 50.000 0.00 0.00 0.00 5.01
497 1278 2.557056 GGGTTTTCTTTACTCAGGCACC 59.443 50.000 0.00 0.00 0.00 5.01
498 1279 3.487372 GGTTTTCTTTACTCAGGCACCT 58.513 45.455 0.00 0.00 0.00 4.00
499 1280 3.253432 GGTTTTCTTTACTCAGGCACCTG 59.747 47.826 10.60 10.60 44.86 4.00
500 1281 3.857157 TTTCTTTACTCAGGCACCTGT 57.143 42.857 16.12 0.90 43.96 4.00
501 1282 2.839486 TCTTTACTCAGGCACCTGTG 57.161 50.000 16.12 15.75 43.96 3.66
506 1287 0.035458 ACTCAGGCACCTGTGTAAGC 59.965 55.000 19.95 0.00 45.30 3.09
532 1313 2.173519 CCGTTGTACAGGGTCTAAGGA 58.826 52.381 6.83 0.00 0.00 3.36
533 1314 2.564062 CCGTTGTACAGGGTCTAAGGAA 59.436 50.000 6.83 0.00 0.00 3.36
534 1315 3.368116 CCGTTGTACAGGGTCTAAGGAAG 60.368 52.174 6.83 0.00 0.00 3.46
535 1316 3.597255 GTTGTACAGGGTCTAAGGAAGC 58.403 50.000 0.00 0.00 0.00 3.86
536 1317 2.185387 TGTACAGGGTCTAAGGAAGCC 58.815 52.381 0.00 0.00 34.42 4.35
538 1319 1.574263 ACAGGGTCTAAGGAAGCCTC 58.426 55.000 0.00 0.00 42.62 4.70
540 1321 0.326713 AGGGTCTAAGGAAGCCTCCC 60.327 60.000 0.00 0.00 43.64 4.30
589 1557 1.211818 GCAAATGCAACACGGCGAAA 61.212 50.000 16.62 0.00 41.59 3.46
605 1573 0.167908 GAAACCGAATGCATGCACGA 59.832 50.000 26.70 5.46 0.00 4.35
608 1576 0.109781 ACCGAATGCATGCACGAAAC 60.110 50.000 26.70 14.36 0.00 2.78
611 1579 2.252747 CGAATGCATGCACGAAACAAT 58.747 42.857 25.37 0.38 0.00 2.71
612 1580 2.662637 CGAATGCATGCACGAAACAATT 59.337 40.909 25.37 10.85 0.00 2.32
613 1581 3.850837 CGAATGCATGCACGAAACAATTA 59.149 39.130 25.37 0.00 0.00 1.40
614 1582 4.258977 CGAATGCATGCACGAAACAATTAC 60.259 41.667 25.37 4.49 0.00 1.89
615 1583 3.913548 TGCATGCACGAAACAATTACT 57.086 38.095 18.46 0.00 0.00 2.24
616 1584 3.820689 TGCATGCACGAAACAATTACTC 58.179 40.909 18.46 0.00 0.00 2.59
617 1585 3.171277 GCATGCACGAAACAATTACTCC 58.829 45.455 14.21 0.00 0.00 3.85
618 1586 3.758300 CATGCACGAAACAATTACTCCC 58.242 45.455 0.00 0.00 0.00 4.30
619 1587 3.134574 TGCACGAAACAATTACTCCCT 57.865 42.857 0.00 0.00 0.00 4.20
620 1588 3.071479 TGCACGAAACAATTACTCCCTC 58.929 45.455 0.00 0.00 0.00 4.30
621 1589 2.418976 GCACGAAACAATTACTCCCTCC 59.581 50.000 0.00 0.00 0.00 4.30
622 1590 3.670625 CACGAAACAATTACTCCCTCCA 58.329 45.455 0.00 0.00 0.00 3.86
623 1591 4.261801 CACGAAACAATTACTCCCTCCAT 58.738 43.478 0.00 0.00 0.00 3.41
624 1592 4.700213 CACGAAACAATTACTCCCTCCATT 59.300 41.667 0.00 0.00 0.00 3.16
625 1593 5.183140 CACGAAACAATTACTCCCTCCATTT 59.817 40.000 0.00 0.00 0.00 2.32
626 1594 5.773176 ACGAAACAATTACTCCCTCCATTTT 59.227 36.000 0.00 0.00 0.00 1.82
627 1595 6.943718 ACGAAACAATTACTCCCTCCATTTTA 59.056 34.615 0.00 0.00 0.00 1.52
628 1596 7.449086 ACGAAACAATTACTCCCTCCATTTTAA 59.551 33.333 0.00 0.00 0.00 1.52
629 1597 8.301002 CGAAACAATTACTCCCTCCATTTTAAA 58.699 33.333 0.00 0.00 0.00 1.52
630 1598 9.990360 GAAACAATTACTCCCTCCATTTTAAAA 57.010 29.630 2.51 2.51 0.00 1.52
638 1606 8.753497 ACTCCCTCCATTTTAAAATAGATGAC 57.247 34.615 12.98 0.00 0.00 3.06
639 1607 7.780271 ACTCCCTCCATTTTAAAATAGATGACC 59.220 37.037 12.98 0.00 0.00 4.02
640 1608 7.066781 TCCCTCCATTTTAAAATAGATGACCC 58.933 38.462 12.98 0.00 0.00 4.46
641 1609 6.838612 CCCTCCATTTTAAAATAGATGACCCA 59.161 38.462 12.98 0.00 0.00 4.51
642 1610 7.344352 CCCTCCATTTTAAAATAGATGACCCAA 59.656 37.037 12.98 0.00 0.00 4.12
643 1611 8.927411 CCTCCATTTTAAAATAGATGACCCAAT 58.073 33.333 12.98 0.00 0.00 3.16
706 1674 4.102524 TCATGTATTTAGGTCGCTCCCATT 59.897 41.667 0.00 0.00 36.75 3.16
707 1675 5.305902 TCATGTATTTAGGTCGCTCCCATTA 59.694 40.000 0.00 0.00 36.75 1.90
708 1676 5.209818 TGTATTTAGGTCGCTCCCATTAG 57.790 43.478 0.00 0.00 36.75 1.73
709 1677 4.897076 TGTATTTAGGTCGCTCCCATTAGA 59.103 41.667 0.00 0.00 36.75 2.10
710 1678 5.364446 TGTATTTAGGTCGCTCCCATTAGAA 59.636 40.000 0.00 0.00 36.75 2.10
711 1679 4.402056 TTTAGGTCGCTCCCATTAGAAG 57.598 45.455 0.00 0.00 36.75 2.85
712 1680 0.466124 AGGTCGCTCCCATTAGAAGC 59.534 55.000 0.00 0.00 36.75 3.86
713 1681 0.178068 GGTCGCTCCCATTAGAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
714 1682 1.406887 GGTCGCTCCCATTAGAAGCAA 60.407 52.381 0.00 0.00 0.00 3.91
715 1683 2.565841 GTCGCTCCCATTAGAAGCAAT 58.434 47.619 0.00 0.00 0.00 3.56
716 1684 2.945668 GTCGCTCCCATTAGAAGCAATT 59.054 45.455 0.00 0.00 0.00 2.32
717 1685 3.002759 GTCGCTCCCATTAGAAGCAATTC 59.997 47.826 0.00 0.00 0.00 2.17
718 1686 2.032549 CGCTCCCATTAGAAGCAATTCG 60.033 50.000 0.00 0.00 0.00 3.34
719 1687 3.206150 GCTCCCATTAGAAGCAATTCGA 58.794 45.455 0.00 0.00 0.00 3.71
720 1688 3.002759 GCTCCCATTAGAAGCAATTCGAC 59.997 47.826 0.00 0.00 0.00 4.20
721 1689 3.541632 TCCCATTAGAAGCAATTCGACC 58.458 45.455 0.00 0.00 0.00 4.79
722 1690 2.618709 CCCATTAGAAGCAATTCGACCC 59.381 50.000 0.00 0.00 0.00 4.46
723 1691 3.545703 CCATTAGAAGCAATTCGACCCT 58.454 45.455 0.00 0.00 0.00 4.34
724 1692 3.947834 CCATTAGAAGCAATTCGACCCTT 59.052 43.478 0.00 0.00 0.00 3.95
725 1693 4.201950 CCATTAGAAGCAATTCGACCCTTG 60.202 45.833 0.00 0.00 0.00 3.61
726 1694 2.859165 AGAAGCAATTCGACCCTTGA 57.141 45.000 5.90 0.00 0.00 3.02
727 1695 3.356529 AGAAGCAATTCGACCCTTGAT 57.643 42.857 5.90 0.00 0.00 2.57
728 1696 3.274288 AGAAGCAATTCGACCCTTGATC 58.726 45.455 5.90 0.00 0.00 2.92
729 1697 2.787473 AGCAATTCGACCCTTGATCA 57.213 45.000 0.00 0.00 0.00 2.92
730 1698 2.636830 AGCAATTCGACCCTTGATCAG 58.363 47.619 0.00 0.00 0.00 2.90
740 1708 4.681781 CGACCCTTGATCAGTAGAAGCAAT 60.682 45.833 0.00 0.00 0.00 3.56
811 1788 1.038681 GTCCACATGCATGCCATCCA 61.039 55.000 26.53 2.02 29.71 3.41
812 1789 0.105913 TCCACATGCATGCCATCCAT 60.106 50.000 26.53 1.90 29.71 3.41
813 1790 0.317160 CCACATGCATGCCATCCATC 59.683 55.000 26.53 0.00 29.71 3.51
814 1791 0.317160 CACATGCATGCCATCCATCC 59.683 55.000 26.53 0.00 29.71 3.51
815 1792 0.105913 ACATGCATGCCATCCATCCA 60.106 50.000 26.53 0.00 29.71 3.41
816 1793 1.266178 CATGCATGCCATCCATCCAT 58.734 50.000 14.93 0.00 32.47 3.41
817 1794 1.204704 CATGCATGCCATCCATCCATC 59.795 52.381 14.93 0.00 29.77 3.51
818 1795 0.541063 TGCATGCCATCCATCCATCC 60.541 55.000 16.68 0.00 29.71 3.51
908 1885 3.181440 ACTGAAATCATCACACCACACCT 60.181 43.478 0.00 0.00 33.47 4.00
930 1907 1.378882 CCACCCTGCCATGATCAACG 61.379 60.000 0.00 0.00 0.00 4.10
939 1916 0.873721 CATGATCAACGCACCACACA 59.126 50.000 0.00 0.00 0.00 3.72
940 1917 0.874390 ATGATCAACGCACCACACAC 59.126 50.000 0.00 0.00 0.00 3.82
941 1918 0.462759 TGATCAACGCACCACACACA 60.463 50.000 0.00 0.00 0.00 3.72
942 1919 0.041312 GATCAACGCACCACACACAC 60.041 55.000 0.00 0.00 0.00 3.82
943 1920 1.444119 ATCAACGCACCACACACACC 61.444 55.000 0.00 0.00 0.00 4.16
944 1921 2.112198 CAACGCACCACACACACCT 61.112 57.895 0.00 0.00 0.00 4.00
964 1943 4.102524 ACCTACACCTGAACAACATTCTCA 59.897 41.667 0.00 0.00 0.00 3.27
999 1979 7.023575 CACACAAAGGAACTACAATATTCAGC 58.976 38.462 0.00 0.00 38.49 4.26
1006 1986 5.471456 GGAACTACAATATTCAGCATGGAGG 59.529 44.000 0.00 0.00 36.16 4.30
1015 1995 3.589881 GCATGGAGGGCATCGTGC 61.590 66.667 11.34 11.34 44.08 5.34
1155 2135 3.726517 GTGCACGGCAAGCGTCAT 61.727 61.111 0.00 0.00 41.47 3.06
1402 2382 2.677979 GGCTTCTTCAACGGCGACC 61.678 63.158 16.62 0.00 0.00 4.79
1539 2519 3.008049 GTCCATTGTGGGAGTGAACTAGT 59.992 47.826 0.00 0.00 38.32 2.57
1618 2609 3.806316 TTTTTAGCTAGAAGTGCGTGC 57.194 42.857 0.00 0.00 35.28 5.34
1629 2620 1.725973 GTGCGTGCGAGCCTTTTTC 60.726 57.895 0.00 0.00 36.02 2.29
1640 2631 4.201734 GCGAGCCTTTTTCTTAGCTAGAAC 60.202 45.833 0.00 0.00 42.50 3.01
1642 2633 6.331061 CGAGCCTTTTTCTTAGCTAGAACTA 58.669 40.000 0.00 0.00 42.50 2.24
1643 2634 6.474102 CGAGCCTTTTTCTTAGCTAGAACTAG 59.526 42.308 0.00 4.67 42.50 2.57
1644 2635 7.483580 AGCCTTTTTCTTAGCTAGAACTAGA 57.516 36.000 12.33 0.00 42.50 2.43
1645 2636 7.908453 AGCCTTTTTCTTAGCTAGAACTAGAA 58.092 34.615 12.33 1.47 42.50 2.10
1646 2637 7.820386 AGCCTTTTTCTTAGCTAGAACTAGAAC 59.180 37.037 12.33 0.00 42.50 3.01
1670 2687 2.128771 AGTGTGTGTGAGCCTTTGTT 57.871 45.000 0.00 0.00 0.00 2.83
1671 2688 2.446435 AGTGTGTGTGAGCCTTTGTTT 58.554 42.857 0.00 0.00 0.00 2.83
1672 2689 2.825532 AGTGTGTGTGAGCCTTTGTTTT 59.174 40.909 0.00 0.00 0.00 2.43
1673 2690 3.258123 AGTGTGTGTGAGCCTTTGTTTTT 59.742 39.130 0.00 0.00 0.00 1.94
1768 2786 4.204028 ATACCCGTGGGCCATGGC 62.204 66.667 35.17 29.47 39.07 4.40
1826 2844 0.666274 TGCGACTTTAGCACGACCTG 60.666 55.000 0.00 0.00 40.01 4.00
1827 2845 0.388134 GCGACTTTAGCACGACCTGA 60.388 55.000 0.00 0.00 34.19 3.86
1828 2846 1.933500 GCGACTTTAGCACGACCTGAA 60.934 52.381 0.00 0.00 34.19 3.02
1829 2847 1.986378 CGACTTTAGCACGACCTGAAG 59.014 52.381 0.00 0.00 35.32 3.02
1830 2848 2.338500 GACTTTAGCACGACCTGAAGG 58.662 52.381 13.05 0.00 42.17 3.46
1831 2849 1.002087 ACTTTAGCACGACCTGAAGGG 59.998 52.381 13.05 0.00 40.27 3.95
1840 2858 4.379174 CCTGAAGGGTTGACGTGG 57.621 61.111 0.00 0.00 0.00 4.94
1841 2859 1.966451 CCTGAAGGGTTGACGTGGC 60.966 63.158 0.00 0.00 0.00 5.01
1842 2860 1.071471 CTGAAGGGTTGACGTGGCT 59.929 57.895 0.00 0.00 0.00 4.75
1843 2861 0.320374 CTGAAGGGTTGACGTGGCTA 59.680 55.000 0.00 0.00 0.00 3.93
1844 2862 0.981183 TGAAGGGTTGACGTGGCTAT 59.019 50.000 0.00 0.00 0.00 2.97
1845 2863 2.167693 CTGAAGGGTTGACGTGGCTATA 59.832 50.000 0.00 0.00 0.00 1.31
1846 2864 2.093869 TGAAGGGTTGACGTGGCTATAC 60.094 50.000 0.00 0.00 0.00 1.47
1847 2865 1.563924 AGGGTTGACGTGGCTATACA 58.436 50.000 0.00 0.00 0.00 2.29
1848 2866 1.206371 AGGGTTGACGTGGCTATACAC 59.794 52.381 0.00 0.00 37.99 2.90
1862 2880 0.175073 ATACACGGAAGTTCTCGCCC 59.825 55.000 11.98 0.00 46.40 6.13
1864 2882 1.301401 CACGGAAGTTCTCGCCCAA 60.301 57.895 11.98 0.00 46.40 4.12
1875 2893 4.020617 CGCCCAAGAGCACCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
1876 2894 2.045536 GCCCAAGAGCACCTCCAG 60.046 66.667 0.00 0.00 0.00 3.86
1877 2895 2.045536 CCCAAGAGCACCTCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
1890 2908 0.169672 CTCCAGCGAACCATGCAAAG 59.830 55.000 0.00 0.00 33.85 2.77
1891 2909 0.250684 TCCAGCGAACCATGCAAAGA 60.251 50.000 0.00 0.00 33.85 2.52
1893 2911 1.203052 CCAGCGAACCATGCAAAGATT 59.797 47.619 0.00 0.00 33.85 2.40
1896 2914 2.095059 AGCGAACCATGCAAAGATTCAC 60.095 45.455 0.00 0.00 33.85 3.18
1899 2917 2.995466 ACCATGCAAAGATTCACGTG 57.005 45.000 9.94 9.94 0.00 4.49
1905 2923 1.470098 GCAAAGATTCACGTGGATGCT 59.530 47.619 15.75 8.45 0.00 3.79
1908 2926 0.745845 AGATTCACGTGGATGCTGCC 60.746 55.000 15.75 0.00 0.00 4.85
1915 2933 2.103042 GTGGATGCTGCCGTGAGAC 61.103 63.158 0.00 0.00 0.00 3.36
1926 2944 2.574399 GTGAGACCAGGACGAGGC 59.426 66.667 0.00 0.00 0.00 4.70
1929 2947 4.680537 AGACCAGGACGAGGCGGT 62.681 66.667 0.00 0.00 0.00 5.68
1930 2948 3.692406 GACCAGGACGAGGCGGTT 61.692 66.667 0.00 0.00 0.00 4.44
1934 2952 4.070552 AGGACGAGGCGGTTCTGC 62.071 66.667 0.00 0.00 0.00 4.26
1955 2973 3.434319 CGTGGTGTGCAGGGATGC 61.434 66.667 0.00 0.00 0.00 3.91
1956 2974 3.064324 GTGGTGTGCAGGGATGCC 61.064 66.667 0.00 0.00 0.00 4.40
1962 2980 3.410628 TGCAGGGATGCCGATGGT 61.411 61.111 0.00 0.00 0.00 3.55
1965 2983 1.166531 GCAGGGATGCCGATGGTAAC 61.167 60.000 0.00 0.00 0.00 2.50
1974 2992 2.240160 TGCCGATGGTAACTATTTGGGT 59.760 45.455 0.00 0.00 37.61 4.51
1976 2994 3.811497 GCCGATGGTAACTATTTGGGTAC 59.189 47.826 0.00 0.00 37.61 3.34
1977 2995 4.443881 GCCGATGGTAACTATTTGGGTACT 60.444 45.833 0.00 0.00 37.61 2.73
1978 2996 5.221501 GCCGATGGTAACTATTTGGGTACTA 60.222 44.000 0.00 0.00 37.61 1.82
1979 2997 6.453092 CCGATGGTAACTATTTGGGTACTAG 58.547 44.000 0.00 0.00 37.61 2.57
1980 2998 6.041296 CCGATGGTAACTATTTGGGTACTAGT 59.959 42.308 0.00 0.00 37.61 2.57
1981 2999 7.231317 CCGATGGTAACTATTTGGGTACTAGTA 59.769 40.741 0.00 0.00 37.61 1.82
1982 3000 8.078596 CGATGGTAACTATTTGGGTACTAGTAC 58.921 40.741 22.53 22.53 34.44 2.73
1983 3001 9.140874 GATGGTAACTATTTGGGTACTAGTACT 57.859 37.037 27.71 13.50 35.17 2.73
1992 3010 4.927049 TGGGTACTAGTACTGTACTGCTT 58.073 43.478 27.71 14.43 39.81 3.91
2007 3025 0.685785 TGCTTTGGTGGTGCAAGGAA 60.686 50.000 0.00 0.00 33.48 3.36
2009 3027 1.606224 GCTTTGGTGGTGCAAGGAATG 60.606 52.381 0.00 0.00 0.00 2.67
2030 3048 2.224719 GGATGATCCAATGACCCTGGAG 60.225 54.545 6.60 0.00 46.04 3.86
2034 3052 2.825836 CAATGACCCTGGAGGCGC 60.826 66.667 0.00 0.00 40.58 6.53
2048 3066 4.537433 GCGCTGGCCTGTAGGGAG 62.537 72.222 11.69 0.00 37.23 4.30
2069 3087 0.957395 CACTTTGTGCTGCCGAGGAT 60.957 55.000 0.00 0.00 0.00 3.24
2072 3090 0.036732 TTTGTGCTGCCGAGGATCTT 59.963 50.000 0.00 0.00 0.00 2.40
2075 3093 0.529555 GTGCTGCCGAGGATCTTCTC 60.530 60.000 3.09 0.00 0.00 2.87
2076 3094 0.685785 TGCTGCCGAGGATCTTCTCT 60.686 55.000 3.09 0.00 0.00 3.10
2078 3096 1.805871 GCTGCCGAGGATCTTCTCTTG 60.806 57.143 3.09 0.00 0.00 3.02
2081 3099 1.805871 GCCGAGGATCTTCTCTTGCAG 60.806 57.143 3.09 0.00 32.84 4.41
2082 3100 1.569708 CGAGGATCTTCTCTTGCAGC 58.430 55.000 3.09 0.00 0.00 5.25
2084 3102 2.483363 CGAGGATCTTCTCTTGCAGCAT 60.483 50.000 0.00 0.00 0.00 3.79
2096 3114 0.240678 TGCAGCATTTTGTGGTAGCG 59.759 50.000 0.00 0.00 36.63 4.26
2112 3130 2.693797 AGCGTCAGATGCAAAACAAG 57.306 45.000 17.16 0.00 31.07 3.16
2117 3135 4.457810 CGTCAGATGCAAAACAAGTAGTG 58.542 43.478 0.00 0.00 0.00 2.74
2118 3136 4.222114 GTCAGATGCAAAACAAGTAGTGC 58.778 43.478 0.00 2.14 37.51 4.40
2123 3141 1.334689 GCAAAACAAGTAGTGCGGGAC 60.335 52.381 0.00 0.00 0.00 4.46
2127 3145 1.808411 ACAAGTAGTGCGGGACATTG 58.192 50.000 1.61 6.57 0.00 2.82
2128 3146 0.447801 CAAGTAGTGCGGGACATTGC 59.552 55.000 1.61 0.00 0.00 3.56
2135 3153 3.056313 GCGGGACATTGCTCAAGGC 62.056 63.158 0.00 0.00 42.22 4.35
2150 3168 1.822990 CAAGGCTCTCATGGCAAACAT 59.177 47.619 0.00 0.00 41.57 2.71
2162 3180 2.273557 GGCAAACATGGTGCAATCATC 58.726 47.619 21.03 3.60 44.07 2.92
2166 3184 1.842052 ACATGGTGCAATCATCAGCA 58.158 45.000 0.00 0.00 44.58 4.41
2179 3197 3.276857 TCATCAGCAAGATCAAAGCTCC 58.723 45.455 3.90 0.00 36.26 4.70
2180 3198 3.054582 TCATCAGCAAGATCAAAGCTCCT 60.055 43.478 3.90 0.00 36.26 3.69
2186 3204 3.625313 GCAAGATCAAAGCTCCTTCTACC 59.375 47.826 0.00 0.00 0.00 3.18
2189 3207 0.249398 TCAAAGCTCCTTCTACCGCC 59.751 55.000 0.00 0.00 0.00 6.13
2201 3219 2.968675 TCTACCGCCTTTTCTTGTAGC 58.031 47.619 0.00 0.00 31.24 3.58
2222 3240 7.606456 TGTAGCTTTATTTTTGAAGGTCGAGAT 59.394 33.333 0.00 0.00 35.45 2.75
2278 3296 4.806247 CACTCTTAATCTAGTTTCAGGGCG 59.194 45.833 0.00 0.00 0.00 6.13
2283 3301 2.672961 TCTAGTTTCAGGGCGTCATG 57.327 50.000 0.00 0.00 0.00 3.07
2288 3306 0.107643 TTTCAGGGCGTCATGTGTGA 59.892 50.000 0.00 0.00 0.00 3.58
2318 3336 8.634444 GGCCAACCACATAATGTAAACATTATA 58.366 33.333 21.86 4.78 44.35 0.98
2350 3368 6.363577 TGTGGAATTCGATCAATAAAGAGC 57.636 37.500 0.00 0.00 0.00 4.09
2352 3370 6.543465 TGTGGAATTCGATCAATAAAGAGCAT 59.457 34.615 0.00 0.00 0.00 3.79
2355 3373 6.293845 GGAATTCGATCAATAAAGAGCATGCT 60.294 38.462 22.92 22.92 0.00 3.79
2358 3376 6.441093 TCGATCAATAAAGAGCATGCTTTT 57.559 33.333 23.61 20.17 38.85 2.27
2359 3377 6.489675 TCGATCAATAAAGAGCATGCTTTTC 58.510 36.000 23.61 9.68 38.85 2.29
2362 3380 5.018809 TCAATAAAGAGCATGCTTTTCCCT 58.981 37.500 23.61 11.05 38.85 4.20
2363 3381 5.126061 TCAATAAAGAGCATGCTTTTCCCTC 59.874 40.000 23.61 7.24 38.85 4.30
2442 3460 0.874390 GAAACAATGGCGTGCAGAGA 59.126 50.000 0.00 0.00 0.00 3.10
2443 3461 1.266718 GAAACAATGGCGTGCAGAGAA 59.733 47.619 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.095355 GGAAGTAACAGAATTTCTAAGACGCAA 60.095 37.037 0.00 0.00 0.00 4.85
36 37 6.367969 GGAAGTAACAGAATTTCTAAGACGCA 59.632 38.462 0.00 0.00 0.00 5.24
39 40 9.660180 ATCAGGAAGTAACAGAATTTCTAAGAC 57.340 33.333 0.00 0.00 0.00 3.01
43 44 7.394016 TGCATCAGGAAGTAACAGAATTTCTA 58.606 34.615 0.00 0.00 0.00 2.10
45 46 6.372659 TCTGCATCAGGAAGTAACAGAATTTC 59.627 38.462 0.00 0.00 30.24 2.17
51 52 3.931468 CACTCTGCATCAGGAAGTAACAG 59.069 47.826 0.00 0.00 31.51 3.16
56 57 3.547567 GCACTCTGCATCAGGAAGT 57.452 52.632 0.00 0.00 44.26 3.01
75 76 0.696501 AAACTAGCACCCCCGTGAAT 59.303 50.000 0.00 0.00 43.14 2.57
78 80 2.188062 TAAAAACTAGCACCCCCGTG 57.812 50.000 0.00 0.00 43.35 4.94
106 116 6.147164 CGGTTGACAAACTACAACTATGACAT 59.853 38.462 0.99 0.00 43.68 3.06
110 120 4.212425 TGCGGTTGACAAACTACAACTATG 59.788 41.667 0.99 0.00 43.68 2.23
111 121 4.382291 TGCGGTTGACAAACTACAACTAT 58.618 39.130 0.99 0.00 43.68 2.12
112 122 3.794717 TGCGGTTGACAAACTACAACTA 58.205 40.909 0.99 0.00 43.68 2.24
113 123 2.612212 CTGCGGTTGACAAACTACAACT 59.388 45.455 0.99 0.00 43.68 3.16
114 124 2.286772 CCTGCGGTTGACAAACTACAAC 60.287 50.000 0.99 0.00 43.53 3.32
116 126 1.134340 ACCTGCGGTTGACAAACTACA 60.134 47.619 0.99 0.00 36.48 2.74
118 128 2.335316 AACCTGCGGTTGACAAACTA 57.665 45.000 11.39 0.00 45.07 2.24
120 130 1.555477 CAAACCTGCGGTTGACAAAC 58.445 50.000 12.63 0.00 46.20 2.93
121 131 0.457851 CCAAACCTGCGGTTGACAAA 59.542 50.000 12.63 0.00 46.20 2.83
122 132 0.681564 ACCAAACCTGCGGTTGACAA 60.682 50.000 12.63 0.00 46.20 3.18
123 133 1.077357 ACCAAACCTGCGGTTGACA 60.077 52.632 12.63 0.00 46.20 3.58
125 135 1.890041 CGACCAAACCTGCGGTTGA 60.890 57.895 12.63 0.00 46.20 3.18
128 138 3.767630 AAGCGACCAAACCTGCGGT 62.768 57.895 0.00 0.00 37.65 5.68
130 140 2.556287 GAAGCGACCAAACCTGCG 59.444 61.111 0.00 0.00 0.00 5.18
131 141 1.782028 AACGAAGCGACCAAACCTGC 61.782 55.000 0.00 0.00 0.00 4.85
132 142 0.661020 AAACGAAGCGACCAAACCTG 59.339 50.000 0.00 0.00 0.00 4.00
133 143 1.385528 AAAACGAAGCGACCAAACCT 58.614 45.000 0.00 0.00 0.00 3.50
134 144 2.197792 AAAAACGAAGCGACCAAACC 57.802 45.000 0.00 0.00 0.00 3.27
161 171 3.873910 AGCTATGCCTAAGCGAGAAAAA 58.126 40.909 0.00 0.00 44.87 1.94
162 172 3.543680 AGCTATGCCTAAGCGAGAAAA 57.456 42.857 0.00 0.00 44.87 2.29
163 173 3.553096 GCTAGCTATGCCTAAGCGAGAAA 60.553 47.826 7.70 0.00 43.08 2.52
164 174 2.029828 GCTAGCTATGCCTAAGCGAGAA 60.030 50.000 7.70 0.00 43.08 2.87
165 175 1.542030 GCTAGCTATGCCTAAGCGAGA 59.458 52.381 7.70 0.00 43.08 4.04
166 176 1.543802 AGCTAGCTATGCCTAAGCGAG 59.456 52.381 17.69 7.50 44.87 5.03
167 177 1.621992 AGCTAGCTATGCCTAAGCGA 58.378 50.000 17.69 0.00 44.87 4.93
168 178 2.447244 AAGCTAGCTATGCCTAAGCG 57.553 50.000 19.70 0.00 44.87 4.68
169 179 2.810852 CCAAAGCTAGCTATGCCTAAGC 59.189 50.000 19.70 3.32 40.40 3.09
171 181 3.454447 TGACCAAAGCTAGCTATGCCTAA 59.546 43.478 19.70 0.00 0.00 2.69
173 183 1.839994 TGACCAAAGCTAGCTATGCCT 59.160 47.619 19.70 0.00 0.00 4.75
174 184 2.332063 TGACCAAAGCTAGCTATGCC 57.668 50.000 19.70 7.34 0.00 4.40
175 185 7.044181 TCATATATGACCAAAGCTAGCTATGC 58.956 38.462 19.70 6.84 0.00 3.14
192 202 7.017645 GCCGACAAATAGCAAAGTCATATATG 58.982 38.462 6.36 6.36 0.00 1.78
193 203 6.128553 CGCCGACAAATAGCAAAGTCATATAT 60.129 38.462 0.00 0.00 0.00 0.86
194 204 5.176774 CGCCGACAAATAGCAAAGTCATATA 59.823 40.000 0.00 0.00 0.00 0.86
196 206 3.308595 CGCCGACAAATAGCAAAGTCATA 59.691 43.478 0.00 0.00 0.00 2.15
198 208 1.463056 CGCCGACAAATAGCAAAGTCA 59.537 47.619 0.00 0.00 0.00 3.41
199 209 1.463444 ACGCCGACAAATAGCAAAGTC 59.537 47.619 0.00 0.00 0.00 3.01
200 210 1.519408 ACGCCGACAAATAGCAAAGT 58.481 45.000 0.00 0.00 0.00 2.66
201 211 2.611974 AACGCCGACAAATAGCAAAG 57.388 45.000 0.00 0.00 0.00 2.77
202 212 3.046390 CAAAACGCCGACAAATAGCAAA 58.954 40.909 0.00 0.00 0.00 3.68
203 213 2.033550 ACAAAACGCCGACAAATAGCAA 59.966 40.909 0.00 0.00 0.00 3.91
204 214 1.604755 ACAAAACGCCGACAAATAGCA 59.395 42.857 0.00 0.00 0.00 3.49
205 215 1.976045 CACAAAACGCCGACAAATAGC 59.024 47.619 0.00 0.00 0.00 2.97
207 217 2.355132 ACACACAAAACGCCGACAAATA 59.645 40.909 0.00 0.00 0.00 1.40
208 218 1.133407 ACACACAAAACGCCGACAAAT 59.867 42.857 0.00 0.00 0.00 2.32
209 219 0.522180 ACACACAAAACGCCGACAAA 59.478 45.000 0.00 0.00 0.00 2.83
210 220 0.179187 CACACACAAAACGCCGACAA 60.179 50.000 0.00 0.00 0.00 3.18
211 221 1.425825 CACACACAAAACGCCGACA 59.574 52.632 0.00 0.00 0.00 4.35
212 222 1.937362 GCACACACAAAACGCCGAC 60.937 57.895 0.00 0.00 0.00 4.79
213 223 2.405594 GCACACACAAAACGCCGA 59.594 55.556 0.00 0.00 0.00 5.54
214 224 3.016203 CGCACACACAAAACGCCG 61.016 61.111 0.00 0.00 0.00 6.46
215 225 2.101380 ACGCACACACAAAACGCC 59.899 55.556 0.00 0.00 0.00 5.68
216 226 2.844685 GCACGCACACACAAAACGC 61.845 57.895 0.00 0.00 0.00 4.84
217 227 2.554947 CGCACGCACACACAAAACG 61.555 57.895 0.00 0.00 0.00 3.60
218 228 1.513160 ACGCACGCACACACAAAAC 60.513 52.632 0.00 0.00 0.00 2.43
219 229 1.512947 CACGCACGCACACACAAAA 60.513 52.632 0.00 0.00 0.00 2.44
220 230 2.099254 CACGCACGCACACACAAA 59.901 55.556 0.00 0.00 0.00 2.83
221 231 3.121676 ACACGCACGCACACACAA 61.122 55.556 0.00 0.00 0.00 3.33
223 233 3.375500 AACACACGCACGCACACAC 62.375 57.895 0.00 0.00 0.00 3.82
224 234 3.089729 GAACACACGCACGCACACA 62.090 57.895 0.00 0.00 0.00 3.72
225 235 2.350760 GAACACACGCACGCACAC 60.351 61.111 0.00 0.00 0.00 3.82
226 236 3.919386 CGAACACACGCACGCACA 61.919 61.111 0.00 0.00 0.00 4.57
227 237 2.461002 CTACGAACACACGCACGCAC 62.461 60.000 0.00 0.00 36.70 5.34
229 239 2.297912 ACTACGAACACACGCACGC 61.298 57.895 0.00 0.00 36.70 5.34
230 240 0.931202 TCACTACGAACACACGCACG 60.931 55.000 0.00 0.00 36.70 5.34
231 241 1.415374 ATCACTACGAACACACGCAC 58.585 50.000 0.00 0.00 36.70 5.34
232 242 2.143008 AATCACTACGAACACACGCA 57.857 45.000 0.00 0.00 36.70 5.24
233 243 3.215244 CAAAATCACTACGAACACACGC 58.785 45.455 0.00 0.00 36.70 5.34
234 244 4.200827 CACAAAATCACTACGAACACACG 58.799 43.478 0.00 0.00 39.31 4.49
235 245 3.966218 GCACAAAATCACTACGAACACAC 59.034 43.478 0.00 0.00 0.00 3.82
236 246 3.623510 TGCACAAAATCACTACGAACACA 59.376 39.130 0.00 0.00 0.00 3.72
237 247 4.203950 TGCACAAAATCACTACGAACAC 57.796 40.909 0.00 0.00 0.00 3.32
239 249 5.689819 AGAATGCACAAAATCACTACGAAC 58.310 37.500 0.00 0.00 0.00 3.95
240 250 5.940192 AGAATGCACAAAATCACTACGAA 57.060 34.783 0.00 0.00 0.00 3.85
241 251 5.350365 GGTAGAATGCACAAAATCACTACGA 59.650 40.000 0.00 0.00 32.57 3.43
243 253 6.743575 AGGTAGAATGCACAAAATCACTAC 57.256 37.500 0.00 0.00 0.00 2.73
244 254 8.437360 CATAGGTAGAATGCACAAAATCACTA 57.563 34.615 0.00 0.00 0.00 2.74
264 274 2.828520 ACATATCCGACCTCTGCATAGG 59.171 50.000 16.24 16.24 42.82 2.57
265 275 3.842820 CACATATCCGACCTCTGCATAG 58.157 50.000 0.00 0.00 0.00 2.23
267 277 1.270518 GCACATATCCGACCTCTGCAT 60.271 52.381 0.00 0.00 0.00 3.96
268 278 0.104855 GCACATATCCGACCTCTGCA 59.895 55.000 0.00 0.00 0.00 4.41
270 280 2.898729 AAGCACATATCCGACCTCTG 57.101 50.000 0.00 0.00 0.00 3.35
271 281 4.345257 ACAATAAGCACATATCCGACCTCT 59.655 41.667 0.00 0.00 0.00 3.69
274 284 7.435068 AAATACAATAAGCACATATCCGACC 57.565 36.000 0.00 0.00 0.00 4.79
275 285 8.556194 TCAAAATACAATAAGCACATATCCGAC 58.444 33.333 0.00 0.00 0.00 4.79
276 286 8.669946 TCAAAATACAATAAGCACATATCCGA 57.330 30.769 0.00 0.00 0.00 4.55
277 287 8.559536 ACTCAAAATACAATAAGCACATATCCG 58.440 33.333 0.00 0.00 0.00 4.18
278 288 9.884465 GACTCAAAATACAATAAGCACATATCC 57.116 33.333 0.00 0.00 0.00 2.59
303 668 6.246919 TCCGGTAAAAGGTGGATTTTATTGA 58.753 36.000 0.00 0.00 37.08 2.57
304 669 6.518208 TCCGGTAAAAGGTGGATTTTATTG 57.482 37.500 0.00 0.00 37.08 1.90
305 670 7.541916 TTTCCGGTAAAAGGTGGATTTTATT 57.458 32.000 0.00 0.00 37.08 1.40
309 674 5.873146 TTTTTCCGGTAAAAGGTGGATTT 57.127 34.783 14.26 0.00 38.29 2.17
333 1023 6.374333 GCTTAAACCCAGTGTCTTCATTGATA 59.626 38.462 0.00 0.00 33.95 2.15
335 1025 4.518970 GCTTAAACCCAGTGTCTTCATTGA 59.481 41.667 0.00 0.00 33.95 2.57
336 1026 4.278170 TGCTTAAACCCAGTGTCTTCATTG 59.722 41.667 0.00 0.00 0.00 2.82
343 1033 2.812011 ACGAATGCTTAAACCCAGTGTC 59.188 45.455 0.00 0.00 0.00 3.67
345 1035 2.095263 CCACGAATGCTTAAACCCAGTG 60.095 50.000 0.00 0.00 0.00 3.66
348 1038 0.885196 GCCACGAATGCTTAAACCCA 59.115 50.000 0.00 0.00 0.00 4.51
349 1039 1.173913 AGCCACGAATGCTTAAACCC 58.826 50.000 0.00 0.00 34.87 4.11
350 1040 2.595386 CAAGCCACGAATGCTTAAACC 58.405 47.619 9.71 0.00 46.85 3.27
351 1041 1.985684 GCAAGCCACGAATGCTTAAAC 59.014 47.619 9.71 1.78 46.85 2.01
352 1042 1.611006 TGCAAGCCACGAATGCTTAAA 59.389 42.857 9.71 1.11 46.85 1.52
353 1043 1.199789 CTGCAAGCCACGAATGCTTAA 59.800 47.619 9.71 3.01 46.85 1.85
354 1044 0.804364 CTGCAAGCCACGAATGCTTA 59.196 50.000 9.71 0.00 46.85 3.09
356 1046 2.338015 CCTGCAAGCCACGAATGCT 61.338 57.895 0.00 0.00 41.89 3.79
357 1047 2.180017 CCTGCAAGCCACGAATGC 59.820 61.111 0.00 0.00 40.45 3.56
359 1049 1.377725 CTCCCTGCAAGCCACGAAT 60.378 57.895 0.00 0.00 0.00 3.34
360 1050 2.032528 CTCCCTGCAAGCCACGAA 59.967 61.111 0.00 0.00 0.00 3.85
361 1051 4.704833 GCTCCCTGCAAGCCACGA 62.705 66.667 0.00 0.00 42.31 4.35
370 1060 2.293170 GGAGAAATAACTGCTCCCTGC 58.707 52.381 0.00 0.00 41.84 4.85
375 1065 2.205911 GCTCGGGAGAAATAACTGCTC 58.794 52.381 0.00 0.00 39.18 4.26
379 1069 1.134788 CGGTGCTCGGGAGAAATAACT 60.135 52.381 0.00 0.00 39.18 2.24
380 1070 1.287425 CGGTGCTCGGGAGAAATAAC 58.713 55.000 0.00 0.00 39.18 1.89
399 1089 2.588856 ATTTCCGTCCGGTGCTAGCC 62.589 60.000 13.29 3.27 36.47 3.93
400 1090 0.103572 TATTTCCGTCCGGTGCTAGC 59.896 55.000 8.10 8.10 36.47 3.42
401 1091 2.814280 ATATTTCCGTCCGGTGCTAG 57.186 50.000 0.00 0.00 36.47 3.42
402 1092 3.199677 CAAATATTTCCGTCCGGTGCTA 58.800 45.455 0.00 0.00 36.47 3.49
403 1093 2.014128 CAAATATTTCCGTCCGGTGCT 58.986 47.619 0.00 0.00 36.47 4.40
405 1095 2.014128 AGCAAATATTTCCGTCCGGTG 58.986 47.619 0.00 0.00 36.47 4.94
409 1099 3.489229 GGCAGAAGCAAATATTTCCGTCC 60.489 47.826 0.00 0.00 44.61 4.79
410 1100 3.378427 AGGCAGAAGCAAATATTTCCGTC 59.622 43.478 0.00 0.00 44.61 4.79
411 1101 3.129287 CAGGCAGAAGCAAATATTTCCGT 59.871 43.478 0.00 0.00 44.61 4.69
412 1102 3.699067 CAGGCAGAAGCAAATATTTCCG 58.301 45.455 0.00 0.00 44.61 4.30
413 1103 3.451526 GCAGGCAGAAGCAAATATTTCC 58.548 45.455 0.00 0.00 44.61 3.13
418 1108 2.220653 AAGGCAGGCAGAAGCAAATA 57.779 45.000 0.00 0.00 44.61 1.40
419 1109 1.821136 GTAAGGCAGGCAGAAGCAAAT 59.179 47.619 0.00 0.00 44.61 2.32
421 1111 0.401738 AGTAAGGCAGGCAGAAGCAA 59.598 50.000 0.00 0.00 44.61 3.91
422 1112 1.275666 TAGTAAGGCAGGCAGAAGCA 58.724 50.000 0.00 0.00 44.61 3.91
423 1113 2.284190 CTTAGTAAGGCAGGCAGAAGC 58.716 52.381 1.60 0.00 41.10 3.86
424 1114 2.284190 GCTTAGTAAGGCAGGCAGAAG 58.716 52.381 11.84 0.00 0.00 2.85
425 1115 1.628340 TGCTTAGTAAGGCAGGCAGAA 59.372 47.619 11.84 0.00 34.22 3.02
426 1116 1.066143 GTGCTTAGTAAGGCAGGCAGA 60.066 52.381 11.84 0.00 39.22 4.26
427 1117 1.373570 GTGCTTAGTAAGGCAGGCAG 58.626 55.000 11.84 0.00 39.22 4.85
428 1118 0.035439 GGTGCTTAGTAAGGCAGGCA 60.035 55.000 11.84 1.04 39.22 4.75
429 1119 0.253327 AGGTGCTTAGTAAGGCAGGC 59.747 55.000 11.84 0.00 39.22 4.85
430 1120 1.279271 ACAGGTGCTTAGTAAGGCAGG 59.721 52.381 11.84 5.83 39.22 4.85
431 1121 2.350522 CACAGGTGCTTAGTAAGGCAG 58.649 52.381 11.84 2.44 39.22 4.85
444 1134 5.664457 TCTAGAGATTGTATTGCACAGGTG 58.336 41.667 0.00 0.00 38.72 4.00
445 1135 5.939764 TCTAGAGATTGTATTGCACAGGT 57.060 39.130 0.00 0.00 38.72 4.00
446 1136 7.615582 TTTTCTAGAGATTGTATTGCACAGG 57.384 36.000 0.00 0.00 38.72 4.00
474 1255 1.810755 GCCTGAGTAAAGAAAACCCGG 59.189 52.381 0.00 0.00 0.00 5.73
475 1256 2.225727 GTGCCTGAGTAAAGAAAACCCG 59.774 50.000 0.00 0.00 0.00 5.28
478 1259 3.883489 ACAGGTGCCTGAGTAAAGAAAAC 59.117 43.478 23.55 0.00 46.30 2.43
483 1264 2.550830 ACACAGGTGCCTGAGTAAAG 57.449 50.000 23.55 8.91 43.89 1.85
487 1268 0.035458 GCTTACACAGGTGCCTGAGT 59.965 55.000 23.55 22.34 46.30 3.41
488 1269 0.035317 TGCTTACACAGGTGCCTGAG 59.965 55.000 23.55 18.02 46.30 3.35
489 1270 0.250295 GTGCTTACACAGGTGCCTGA 60.250 55.000 23.55 0.00 46.61 3.86
490 1271 2.247790 GTGCTTACACAGGTGCCTG 58.752 57.895 16.06 16.06 46.61 4.85
491 1272 4.800554 GTGCTTACACAGGTGCCT 57.199 55.556 0.00 0.00 46.61 4.75
499 1280 1.164041 ACAACGGCAGGTGCTTACAC 61.164 55.000 0.30 0.00 46.66 2.90
500 1281 0.393448 TACAACGGCAGGTGCTTACA 59.607 50.000 0.30 0.00 39.07 2.41
501 1282 0.794473 GTACAACGGCAGGTGCTTAC 59.206 55.000 0.30 0.00 39.07 2.34
502 1283 0.393448 TGTACAACGGCAGGTGCTTA 59.607 50.000 0.30 0.00 39.07 3.09
506 1287 3.966215 CCTGTACAACGGCAGGTG 58.034 61.111 0.00 0.00 45.28 4.00
586 1554 0.167908 TCGTGCATGCATTCGGTTTC 59.832 50.000 25.64 7.15 0.00 2.78
589 1557 0.109781 GTTTCGTGCATGCATTCGGT 60.110 50.000 25.64 0.00 0.00 4.69
593 1561 4.808558 AGTAATTGTTTCGTGCATGCATT 58.191 34.783 25.64 13.65 0.00 3.56
612 1580 9.847224 GTCATCTATTTTAAAATGGAGGGAGTA 57.153 33.333 27.66 13.51 38.91 2.59
613 1581 7.780271 GGTCATCTATTTTAAAATGGAGGGAGT 59.220 37.037 27.66 12.88 38.91 3.85
614 1582 7.231519 GGGTCATCTATTTTAAAATGGAGGGAG 59.768 40.741 27.66 18.50 38.91 4.30
615 1583 7.066781 GGGTCATCTATTTTAAAATGGAGGGA 58.933 38.462 27.66 23.12 38.91 4.20
616 1584 6.838612 TGGGTCATCTATTTTAAAATGGAGGG 59.161 38.462 27.66 21.79 38.91 4.30
617 1585 7.896383 TGGGTCATCTATTTTAAAATGGAGG 57.104 36.000 24.56 24.56 38.91 4.30
671 1639 9.841295 GACCTAAATACATGACCCAACTTTATA 57.159 33.333 0.00 0.00 0.00 0.98
672 1640 7.497909 CGACCTAAATACATGACCCAACTTTAT 59.502 37.037 0.00 0.00 0.00 1.40
673 1641 6.819649 CGACCTAAATACATGACCCAACTTTA 59.180 38.462 0.00 0.00 0.00 1.85
674 1642 5.646360 CGACCTAAATACATGACCCAACTTT 59.354 40.000 0.00 0.00 0.00 2.66
675 1643 5.183228 CGACCTAAATACATGACCCAACTT 58.817 41.667 0.00 0.00 0.00 2.66
676 1644 4.766375 CGACCTAAATACATGACCCAACT 58.234 43.478 0.00 0.00 0.00 3.16
677 1645 3.311596 GCGACCTAAATACATGACCCAAC 59.688 47.826 0.00 0.00 0.00 3.77
678 1646 3.199071 AGCGACCTAAATACATGACCCAA 59.801 43.478 0.00 0.00 0.00 4.12
679 1647 2.769663 AGCGACCTAAATACATGACCCA 59.230 45.455 0.00 0.00 0.00 4.51
680 1648 3.391049 GAGCGACCTAAATACATGACCC 58.609 50.000 0.00 0.00 0.00 4.46
681 1649 3.391049 GGAGCGACCTAAATACATGACC 58.609 50.000 0.00 0.00 35.41 4.02
682 1650 3.181469 TGGGAGCGACCTAAATACATGAC 60.181 47.826 0.00 0.00 38.98 3.06
683 1651 3.035363 TGGGAGCGACCTAAATACATGA 58.965 45.455 0.00 0.00 38.98 3.07
684 1652 3.469008 TGGGAGCGACCTAAATACATG 57.531 47.619 0.00 0.00 38.98 3.21
685 1653 4.706842 AATGGGAGCGACCTAAATACAT 57.293 40.909 1.45 0.00 38.98 2.29
686 1654 4.897076 TCTAATGGGAGCGACCTAAATACA 59.103 41.667 1.45 0.00 38.98 2.29
687 1655 5.464030 TCTAATGGGAGCGACCTAAATAC 57.536 43.478 1.45 0.00 38.98 1.89
688 1656 5.510861 GCTTCTAATGGGAGCGACCTAAATA 60.511 44.000 1.45 0.00 38.98 1.40
689 1657 4.743955 GCTTCTAATGGGAGCGACCTAAAT 60.744 45.833 1.45 0.00 38.98 1.40
690 1658 3.431766 GCTTCTAATGGGAGCGACCTAAA 60.432 47.826 1.45 0.00 38.98 1.85
706 1674 3.973206 TCAAGGGTCGAATTGCTTCTA 57.027 42.857 0.00 0.00 0.00 2.10
707 1675 2.859165 TCAAGGGTCGAATTGCTTCT 57.141 45.000 0.00 0.00 0.00 2.85
708 1676 3.009723 TGATCAAGGGTCGAATTGCTTC 58.990 45.455 0.00 0.00 0.00 3.86
709 1677 3.012518 CTGATCAAGGGTCGAATTGCTT 58.987 45.455 0.00 0.00 0.00 3.91
710 1678 2.026822 ACTGATCAAGGGTCGAATTGCT 60.027 45.455 0.00 0.00 0.00 3.91
711 1679 2.359900 ACTGATCAAGGGTCGAATTGC 58.640 47.619 0.00 0.00 0.00 3.56
712 1680 5.011090 TCTACTGATCAAGGGTCGAATTG 57.989 43.478 0.00 0.00 0.00 2.32
713 1681 5.665459 CTTCTACTGATCAAGGGTCGAATT 58.335 41.667 0.00 0.00 0.00 2.17
714 1682 4.442192 GCTTCTACTGATCAAGGGTCGAAT 60.442 45.833 0.00 0.00 0.00 3.34
715 1683 3.119101 GCTTCTACTGATCAAGGGTCGAA 60.119 47.826 0.00 0.00 0.00 3.71
716 1684 2.427453 GCTTCTACTGATCAAGGGTCGA 59.573 50.000 0.00 0.00 0.00 4.20
717 1685 2.166459 TGCTTCTACTGATCAAGGGTCG 59.834 50.000 0.00 0.00 0.00 4.79
718 1686 3.895232 TGCTTCTACTGATCAAGGGTC 57.105 47.619 0.00 0.00 0.00 4.46
719 1687 4.851639 ATTGCTTCTACTGATCAAGGGT 57.148 40.909 0.00 0.00 0.00 4.34
720 1688 4.272018 CGAATTGCTTCTACTGATCAAGGG 59.728 45.833 0.00 0.00 0.00 3.95
721 1689 5.006165 GTCGAATTGCTTCTACTGATCAAGG 59.994 44.000 0.00 0.00 0.00 3.61
722 1690 5.006165 GGTCGAATTGCTTCTACTGATCAAG 59.994 44.000 0.00 0.00 30.06 3.02
723 1691 4.870426 GGTCGAATTGCTTCTACTGATCAA 59.130 41.667 0.00 0.00 30.06 2.57
724 1692 4.433615 GGTCGAATTGCTTCTACTGATCA 58.566 43.478 0.00 0.00 30.06 2.92
725 1693 3.804873 GGGTCGAATTGCTTCTACTGATC 59.195 47.826 0.00 0.00 30.06 2.92
726 1694 3.452627 AGGGTCGAATTGCTTCTACTGAT 59.547 43.478 0.00 0.00 30.06 2.90
727 1695 2.832129 AGGGTCGAATTGCTTCTACTGA 59.168 45.455 0.00 0.00 30.06 3.41
728 1696 3.252974 AGGGTCGAATTGCTTCTACTG 57.747 47.619 0.00 0.00 30.06 2.74
729 1697 3.260884 TCAAGGGTCGAATTGCTTCTACT 59.739 43.478 0.00 0.00 30.06 2.57
730 1698 3.596214 TCAAGGGTCGAATTGCTTCTAC 58.404 45.455 0.00 0.00 0.00 2.59
740 1708 0.976641 AGTGCTGATCAAGGGTCGAA 59.023 50.000 0.00 0.00 0.00 3.71
811 1788 2.787994 GAATTGATCGGCAGGATGGAT 58.212 47.619 0.00 0.00 34.82 3.41
812 1789 2.260844 GAATTGATCGGCAGGATGGA 57.739 50.000 0.00 0.00 34.82 3.41
834 1811 2.429930 GTGCCAGCTGTGTGGGTA 59.570 61.111 13.81 0.00 38.14 3.69
908 1885 1.206811 TGATCATGGCAGGGTGGTGA 61.207 55.000 0.00 0.00 0.00 4.02
930 1907 1.164041 GGTGTAGGTGTGTGTGGTGC 61.164 60.000 0.00 0.00 0.00 5.01
939 1916 3.857157 ATGTTGTTCAGGTGTAGGTGT 57.143 42.857 0.00 0.00 0.00 4.16
940 1917 4.389374 AGAATGTTGTTCAGGTGTAGGTG 58.611 43.478 0.00 0.00 0.00 4.00
941 1918 4.102524 TGAGAATGTTGTTCAGGTGTAGGT 59.897 41.667 0.00 0.00 0.00 3.08
942 1919 4.641396 TGAGAATGTTGTTCAGGTGTAGG 58.359 43.478 0.00 0.00 0.00 3.18
943 1920 6.169094 AGATGAGAATGTTGTTCAGGTGTAG 58.831 40.000 0.00 0.00 0.00 2.74
944 1921 6.114187 AGATGAGAATGTTGTTCAGGTGTA 57.886 37.500 0.00 0.00 0.00 2.90
964 1943 2.486472 CCTTTGTGTGCAGAGGAGAT 57.514 50.000 0.00 0.00 46.64 2.75
987 1966 3.138098 TGCCCTCCATGCTGAATATTGTA 59.862 43.478 0.00 0.00 0.00 2.41
999 1979 2.124612 TGCACGATGCCCTCCATG 60.125 61.111 7.38 0.00 44.23 3.66
1077 2057 1.745864 GTCCAGGAGCTCGACGAGA 60.746 63.158 28.43 2.64 0.00 4.04
1109 2089 1.307953 TCCTCCTCCTCCTCCTCGA 60.308 63.158 0.00 0.00 0.00 4.04
1111 2091 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1112 2092 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1113 2093 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1151 2131 1.522580 GGGAAGCCGAGCTGATGAC 60.523 63.158 0.00 0.00 39.62 3.06
1209 2189 1.339438 TGGATCAAGTTCAGCTCCTGC 60.339 52.381 0.00 0.00 40.05 4.85
1402 2382 4.446413 GTACCACTCCCCCACGCG 62.446 72.222 3.53 3.53 0.00 6.01
1561 2550 5.045432 ACACTTCTAGCCAGACTACTAGACT 60.045 44.000 11.97 1.64 43.43 3.24
1562 2551 5.065474 CACACTTCTAGCCAGACTACTAGAC 59.935 48.000 11.97 0.00 43.43 2.59
1614 2605 1.464189 GCTAAGAAAAAGGCTCGCACG 60.464 52.381 0.00 0.00 0.00 5.34
1618 2609 5.172205 AGTTCTAGCTAAGAAAAAGGCTCG 58.828 41.667 0.00 0.00 45.78 5.03
1629 2620 9.169592 ACACTTCTAGTTCTAGTTCTAGCTAAG 57.830 37.037 14.49 14.86 35.13 2.18
1640 2631 5.157781 GCTCACACACACTTCTAGTTCTAG 58.842 45.833 0.83 0.83 0.00 2.43
1642 2633 3.243907 GGCTCACACACACTTCTAGTTCT 60.244 47.826 0.00 0.00 0.00 3.01
1643 2634 3.060602 GGCTCACACACACTTCTAGTTC 58.939 50.000 0.00 0.00 0.00 3.01
1644 2635 2.700897 AGGCTCACACACACTTCTAGTT 59.299 45.455 0.00 0.00 0.00 2.24
1645 2636 2.320781 AGGCTCACACACACTTCTAGT 58.679 47.619 0.00 0.00 0.00 2.57
1646 2637 3.393089 AAGGCTCACACACACTTCTAG 57.607 47.619 0.00 0.00 0.00 2.43
1670 2687 5.240891 TCACACACAATTTTGGCTCAAAAA 58.759 33.333 14.37 6.19 44.68 1.94
1671 2688 4.825422 TCACACACAATTTTGGCTCAAAA 58.175 34.783 13.22 13.22 45.41 2.44
1672 2689 4.431809 CTCACACACAATTTTGGCTCAAA 58.568 39.130 0.00 0.00 0.00 2.69
1673 2690 3.737663 GCTCACACACAATTTTGGCTCAA 60.738 43.478 0.00 0.00 0.00 3.02
1674 2691 2.223782 GCTCACACACAATTTTGGCTCA 60.224 45.455 0.00 0.00 0.00 4.26
1675 2692 2.397549 GCTCACACACAATTTTGGCTC 58.602 47.619 0.00 0.00 0.00 4.70
1676 2693 1.069049 GGCTCACACACAATTTTGGCT 59.931 47.619 0.00 0.00 0.00 4.75
1677 2694 1.069049 AGGCTCACACACAATTTTGGC 59.931 47.619 0.00 0.00 0.00 4.52
1678 2695 3.457610 AAGGCTCACACACAATTTTGG 57.542 42.857 0.00 0.00 0.00 3.28
1679 2696 5.799681 AAAAAGGCTCACACACAATTTTG 57.200 34.783 0.00 0.00 0.00 2.44
1703 2720 1.102154 CACACACACTTTTGGCTCCA 58.898 50.000 0.00 0.00 0.00 3.86
1704 2721 1.334869 CTCACACACACTTTTGGCTCC 59.665 52.381 0.00 0.00 0.00 4.70
1778 2796 1.683365 ATGACATGCAAGGCCCACC 60.683 57.895 0.00 0.00 0.00 4.61
1812 2830 1.726853 CCCTTCAGGTCGTGCTAAAG 58.273 55.000 0.00 0.00 0.00 1.85
1826 2844 2.093869 TGTATAGCCACGTCAACCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
1827 2845 1.903860 TGTATAGCCACGTCAACCCTT 59.096 47.619 0.00 0.00 0.00 3.95
1828 2846 1.206371 GTGTATAGCCACGTCAACCCT 59.794 52.381 0.00 0.00 0.00 4.34
1829 2847 1.648504 GTGTATAGCCACGTCAACCC 58.351 55.000 0.00 0.00 0.00 4.11
1837 2855 3.445857 GAGAACTTCCGTGTATAGCCAC 58.554 50.000 0.00 0.00 0.00 5.01
1838 2856 2.098607 CGAGAACTTCCGTGTATAGCCA 59.901 50.000 0.00 0.00 0.00 4.75
1839 2857 2.728922 CGAGAACTTCCGTGTATAGCC 58.271 52.381 0.00 0.00 0.00 3.93
1840 2858 2.117910 GCGAGAACTTCCGTGTATAGC 58.882 52.381 0.00 0.00 0.00 2.97
1841 2859 2.543238 GGGCGAGAACTTCCGTGTATAG 60.543 54.545 0.00 0.00 0.00 1.31
1842 2860 1.406539 GGGCGAGAACTTCCGTGTATA 59.593 52.381 0.00 0.00 0.00 1.47
1843 2861 0.175073 GGGCGAGAACTTCCGTGTAT 59.825 55.000 0.00 0.00 0.00 2.29
1844 2862 1.180456 TGGGCGAGAACTTCCGTGTA 61.180 55.000 0.00 0.00 0.00 2.90
1845 2863 2.035237 TTGGGCGAGAACTTCCGTGT 62.035 55.000 0.00 0.00 0.00 4.49
1846 2864 1.291877 CTTGGGCGAGAACTTCCGTG 61.292 60.000 0.00 0.00 0.00 4.94
1847 2865 1.004918 CTTGGGCGAGAACTTCCGT 60.005 57.895 0.00 0.00 0.00 4.69
1848 2866 0.737715 CTCTTGGGCGAGAACTTCCG 60.738 60.000 0.00 0.00 32.74 4.30
1849 2867 1.021920 GCTCTTGGGCGAGAACTTCC 61.022 60.000 0.00 0.00 32.74 3.46
1850 2868 0.320771 TGCTCTTGGGCGAGAACTTC 60.321 55.000 0.00 0.00 32.74 3.01
1851 2869 0.603975 GTGCTCTTGGGCGAGAACTT 60.604 55.000 0.00 0.00 36.76 2.66
1852 2870 1.004440 GTGCTCTTGGGCGAGAACT 60.004 57.895 0.00 0.00 36.76 3.01
1853 2871 2.035442 GGTGCTCTTGGGCGAGAAC 61.035 63.158 0.00 0.00 38.61 3.01
1854 2872 2.172483 GAGGTGCTCTTGGGCGAGAA 62.172 60.000 0.00 0.00 32.74 2.87
1855 2873 2.604686 AGGTGCTCTTGGGCGAGA 60.605 61.111 0.00 0.00 32.74 4.04
1862 2880 1.004560 TTCGCTGGAGGTGCTCTTG 60.005 57.895 0.00 0.00 0.00 3.02
1864 2882 2.659610 GTTCGCTGGAGGTGCTCT 59.340 61.111 0.00 0.00 0.00 4.09
1875 2893 2.095059 GTGAATCTTTGCATGGTTCGCT 60.095 45.455 15.26 0.00 0.00 4.93
1876 2894 2.253603 GTGAATCTTTGCATGGTTCGC 58.746 47.619 9.84 9.84 0.00 4.70
1877 2895 2.095768 ACGTGAATCTTTGCATGGTTCG 60.096 45.455 8.17 2.32 0.00 3.95
1890 2908 1.723870 GGCAGCATCCACGTGAATC 59.276 57.895 19.30 2.99 0.00 2.52
1891 2909 2.108514 CGGCAGCATCCACGTGAAT 61.109 57.895 19.30 0.00 0.00 2.57
1893 2911 4.002506 ACGGCAGCATCCACGTGA 62.003 61.111 19.30 3.36 38.24 4.35
1896 2914 3.190849 CTCACGGCAGCATCCACG 61.191 66.667 0.00 0.00 0.00 4.94
1899 2917 2.512515 GGTCTCACGGCAGCATCC 60.513 66.667 0.00 0.00 0.00 3.51
1905 2923 3.680786 CGTCCTGGTCTCACGGCA 61.681 66.667 0.00 0.00 0.00 5.69
1908 2926 2.878429 CCTCGTCCTGGTCTCACG 59.122 66.667 0.00 0.00 34.78 4.35
1915 2933 3.382832 AGAACCGCCTCGTCCTGG 61.383 66.667 0.00 0.00 0.00 4.45
1929 2947 2.591429 CACACCACGGCTGCAGAA 60.591 61.111 20.43 0.00 0.00 3.02
1937 2955 2.747460 CATCCCTGCACACCACGG 60.747 66.667 0.00 0.00 0.00 4.94
1947 2965 0.469917 AGTTACCATCGGCATCCCTG 59.530 55.000 0.00 0.00 0.00 4.45
1955 2973 5.286267 AGTACCCAAATAGTTACCATCGG 57.714 43.478 0.00 0.00 0.00 4.18
1956 2974 7.047460 ACTAGTACCCAAATAGTTACCATCG 57.953 40.000 0.00 0.00 0.00 3.84
1965 2983 7.284944 AGCAGTACAGTACTAGTACCCAAATAG 59.715 40.741 25.97 13.73 42.09 1.73
1974 2992 5.184479 CCACCAAAGCAGTACAGTACTAGTA 59.816 44.000 13.12 0.00 37.23 1.82
1976 2994 4.021368 ACCACCAAAGCAGTACAGTACTAG 60.021 45.833 13.12 8.93 37.23 2.57
1977 2995 3.899360 ACCACCAAAGCAGTACAGTACTA 59.101 43.478 13.12 0.00 37.23 1.82
1978 2996 2.704065 ACCACCAAAGCAGTACAGTACT 59.296 45.455 7.48 7.48 40.28 2.73
1979 2997 2.806244 CACCACCAAAGCAGTACAGTAC 59.194 50.000 2.05 2.05 0.00 2.73
1980 2998 2.808933 GCACCACCAAAGCAGTACAGTA 60.809 50.000 0.00 0.00 0.00 2.74
1981 2999 1.967319 CACCACCAAAGCAGTACAGT 58.033 50.000 0.00 0.00 0.00 3.55
1982 3000 0.593128 GCACCACCAAAGCAGTACAG 59.407 55.000 0.00 0.00 0.00 2.74
1983 3001 0.106967 TGCACCACCAAAGCAGTACA 60.107 50.000 0.00 0.00 33.75 2.90
1988 3006 0.685785 TTCCTTGCACCACCAAAGCA 60.686 50.000 0.00 0.00 36.32 3.91
1992 3010 0.187117 TCCATTCCTTGCACCACCAA 59.813 50.000 0.00 0.00 0.00 3.67
2009 3027 1.776667 TCCAGGGTCATTGGATCATCC 59.223 52.381 0.00 0.00 39.74 3.51
2019 3037 3.790437 CAGCGCCTCCAGGGTCAT 61.790 66.667 2.29 0.00 37.43 3.06
2039 3057 1.813513 CACAAAGTGCCTCCCTACAG 58.186 55.000 0.00 0.00 0.00 2.74
2060 3078 0.176680 GCAAGAGAAGATCCTCGGCA 59.823 55.000 11.14 0.00 37.87 5.69
2061 3079 0.176680 TGCAAGAGAAGATCCTCGGC 59.823 55.000 9.88 9.88 38.19 5.54
2066 3084 4.082354 ACAAAATGCTGCAAGAGAAGATCC 60.082 41.667 6.36 0.00 34.07 3.36
2069 3087 3.005050 CCACAAAATGCTGCAAGAGAAGA 59.995 43.478 6.36 0.00 34.07 2.87
2072 3090 2.309613 ACCACAAAATGCTGCAAGAGA 58.690 42.857 6.36 0.00 34.07 3.10
2075 3093 2.331194 GCTACCACAAAATGCTGCAAG 58.669 47.619 6.36 0.00 0.00 4.01
2076 3094 1.335780 CGCTACCACAAAATGCTGCAA 60.336 47.619 6.36 0.00 0.00 4.08
2078 3096 0.240945 ACGCTACCACAAAATGCTGC 59.759 50.000 0.00 0.00 0.00 5.25
2081 3099 1.804151 TCTGACGCTACCACAAAATGC 59.196 47.619 0.00 0.00 0.00 3.56
2082 3100 3.728864 GCATCTGACGCTACCACAAAATG 60.729 47.826 0.00 0.00 0.00 2.32
2084 3102 1.804151 GCATCTGACGCTACCACAAAA 59.196 47.619 0.00 0.00 0.00 2.44
2096 3114 4.222114 GCACTACTTGTTTTGCATCTGAC 58.778 43.478 0.00 0.00 34.97 3.51
2112 3130 0.391130 TGAGCAATGTCCCGCACTAC 60.391 55.000 0.00 0.00 0.00 2.73
2117 3135 3.056313 GCCTTGAGCAATGTCCCGC 62.056 63.158 0.00 0.00 42.97 6.13
2118 3136 3.190878 GCCTTGAGCAATGTCCCG 58.809 61.111 0.00 0.00 42.97 5.14
2127 3145 0.679002 TTGCCATGAGAGCCTTGAGC 60.679 55.000 0.00 0.00 44.25 4.26
2128 3146 1.471684 GTTTGCCATGAGAGCCTTGAG 59.528 52.381 0.00 0.00 0.00 3.02
2150 3168 2.203470 TCTTGCTGATGATTGCACCA 57.797 45.000 0.00 0.00 39.05 4.17
2153 3171 4.676986 GCTTTGATCTTGCTGATGATTGCA 60.677 41.667 0.00 0.00 35.14 4.08
2162 3180 3.345414 AGAAGGAGCTTTGATCTTGCTG 58.655 45.455 11.24 0.00 37.16 4.41
2166 3184 3.680196 GCGGTAGAAGGAGCTTTGATCTT 60.680 47.826 0.00 0.00 0.00 2.40
2179 3197 3.371285 GCTACAAGAAAAGGCGGTAGAAG 59.629 47.826 0.00 0.00 34.75 2.85
2180 3198 3.007614 AGCTACAAGAAAAGGCGGTAGAA 59.992 43.478 0.00 0.00 34.75 2.10
2186 3204 7.381139 TCAAAAATAAAGCTACAAGAAAAGGCG 59.619 33.333 0.00 0.00 0.00 5.52
2254 3272 5.624738 CGCCCTGAAACTAGATTAAGAGTGT 60.625 44.000 0.00 0.00 0.00 3.55
2255 3273 4.806247 CGCCCTGAAACTAGATTAAGAGTG 59.194 45.833 0.00 0.00 0.00 3.51
2256 3274 4.466726 ACGCCCTGAAACTAGATTAAGAGT 59.533 41.667 0.00 0.00 0.00 3.24
2264 3282 1.899814 ACATGACGCCCTGAAACTAGA 59.100 47.619 0.00 0.00 0.00 2.43
2265 3283 2.002586 CACATGACGCCCTGAAACTAG 58.997 52.381 0.00 0.00 0.00 2.57
2268 3286 0.238289 CACACATGACGCCCTGAAAC 59.762 55.000 0.00 0.00 0.00 2.78
2269 3287 0.107643 TCACACATGACGCCCTGAAA 59.892 50.000 0.00 0.00 0.00 2.69
2270 3288 0.324614 ATCACACATGACGCCCTGAA 59.675 50.000 0.00 0.00 37.79 3.02
2271 3289 0.324614 AATCACACATGACGCCCTGA 59.675 50.000 0.00 0.00 37.79 3.86
2273 3291 1.167851 CAAATCACACATGACGCCCT 58.832 50.000 0.00 0.00 37.79 5.19
2275 3293 0.456653 GCCAAATCACACATGACGCC 60.457 55.000 0.00 0.00 37.79 5.68
2278 3296 2.610232 GGTTGGCCAAATCACACATGAC 60.610 50.000 22.47 3.11 34.17 3.06
2288 3306 7.528543 ATGTTTACATTATGTGGTTGGCCAAAT 60.529 33.333 22.47 12.86 44.65 2.32
2324 3342 8.725148 GCTCTTTATTGATCGAATTCCACATAT 58.275 33.333 0.00 0.00 0.00 1.78
2326 3344 6.543465 TGCTCTTTATTGATCGAATTCCACAT 59.457 34.615 0.00 0.00 0.00 3.21
2328 3346 6.363577 TGCTCTTTATTGATCGAATTCCAC 57.636 37.500 0.00 0.00 0.00 4.02
2331 3349 6.666417 AGCATGCTCTTTATTGATCGAATTC 58.334 36.000 16.30 0.00 0.00 2.17
2333 3351 6.630444 AAGCATGCTCTTTATTGATCGAAT 57.370 33.333 22.93 0.00 0.00 3.34
2335 3353 6.441093 AAAAGCATGCTCTTTATTGATCGA 57.559 33.333 22.93 0.00 35.41 3.59
2336 3354 5.684626 GGAAAAGCATGCTCTTTATTGATCG 59.315 40.000 22.93 0.00 35.41 3.69
2338 3356 5.659971 AGGGAAAAGCATGCTCTTTATTGAT 59.340 36.000 22.93 0.00 35.41 2.57
2340 3358 5.105635 TGAGGGAAAAGCATGCTCTTTATTG 60.106 40.000 22.93 0.00 35.41 1.90
2370 3388 3.127548 CAGCAAATTCAGGTCGTGCTATT 59.872 43.478 0.00 0.00 43.48 1.73
2371 3389 2.679837 CAGCAAATTCAGGTCGTGCTAT 59.320 45.455 0.00 0.00 43.48 2.97
2372 3390 2.076100 CAGCAAATTCAGGTCGTGCTA 58.924 47.619 0.00 0.00 43.48 3.49
2373 3391 0.877071 CAGCAAATTCAGGTCGTGCT 59.123 50.000 0.00 0.00 46.16 4.40
2374 3392 0.874390 TCAGCAAATTCAGGTCGTGC 59.126 50.000 0.00 0.00 35.41 5.34
2375 3393 2.807967 TCTTCAGCAAATTCAGGTCGTG 59.192 45.455 0.00 0.00 0.00 4.35
2376 3394 3.070018 CTCTTCAGCAAATTCAGGTCGT 58.930 45.455 0.00 0.00 0.00 4.34
2377 3395 3.329386 TCTCTTCAGCAAATTCAGGTCG 58.671 45.455 0.00 0.00 0.00 4.79
2378 3396 3.126686 GCTCTCTTCAGCAAATTCAGGTC 59.873 47.826 0.00 0.00 39.43 3.85
2379 3397 3.080319 GCTCTCTTCAGCAAATTCAGGT 58.920 45.455 0.00 0.00 39.43 4.00
2380 3398 3.079578 TGCTCTCTTCAGCAAATTCAGG 58.920 45.455 0.00 0.00 46.65 3.86
2406 3424 6.373005 TTGTTTCTCAGATAACATGAGGGA 57.627 37.500 0.00 0.00 43.60 4.20
2413 3431 4.154015 CACGCCATTGTTTCTCAGATAACA 59.846 41.667 0.00 0.00 32.76 2.41
2422 3440 0.877071 CTCTGCACGCCATTGTTTCT 59.123 50.000 0.00 0.00 0.00 2.52
2442 3460 2.443016 AGGAGATCCTCGGCGCTT 60.443 61.111 7.64 0.00 44.77 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.