Multiple sequence alignment - TraesCS3D01G292700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G292700 chr3D 100.000 2666 0 0 1 2666 402748633 402745968 0.000000e+00 4924.0
1 TraesCS3D01G292700 chr3D 92.593 135 10 0 215 349 407513663 407513529 7.530000e-46 195.0
2 TraesCS3D01G292700 chr3D 96.262 107 4 0 118 224 210622552 210622446 2.730000e-40 176.0
3 TraesCS3D01G292700 chr3D 84.444 180 22 5 2269 2443 12369084 12368906 3.530000e-39 172.0
4 TraesCS3D01G292700 chr3D 84.302 172 21 3 2272 2443 352959357 352959192 2.120000e-36 163.0
5 TraesCS3D01G292700 chr3D 83.616 177 22 7 2269 2442 591615938 591615766 2.750000e-35 159.0
6 TraesCS3D01G292700 chr3A 89.296 1364 77 28 376 1701 523609935 523608603 0.000000e+00 1646.0
7 TraesCS3D01G292700 chr3A 90.709 592 34 5 1700 2271 523608529 523607939 0.000000e+00 769.0
8 TraesCS3D01G292700 chr3A 95.935 123 5 0 226 348 348834451 348834573 1.620000e-47 200.0
9 TraesCS3D01G292700 chr3B 90.700 1172 62 17 400 1561 528426205 528425071 0.000000e+00 1517.0
10 TraesCS3D01G292700 chr3B 91.077 325 16 6 1946 2264 528420471 528420154 6.820000e-116 427.0
11 TraesCS3D01G292700 chr3B 84.462 251 27 6 1097 1347 528493117 528492879 1.230000e-58 237.0
12 TraesCS3D01G292700 chr3B 90.345 145 14 0 212 356 719382757 719382901 9.740000e-45 191.0
13 TraesCS3D01G292700 chr3B 90.833 120 10 1 1835 1953 528423368 528423249 2.750000e-35 159.0
14 TraesCS3D01G292700 chr4D 95.968 124 5 0 226 349 492804404 492804281 4.500000e-48 202.0
15 TraesCS3D01G292700 chr4D 87.671 146 14 3 2271 2412 399227056 399226911 1.640000e-37 167.0
16 TraesCS3D01G292700 chr4D 81.215 181 26 6 2268 2443 7767925 7767748 3.580000e-29 139.0
17 TraesCS3D01G292700 chr4D 79.459 185 32 3 2263 2443 84918392 84918574 2.790000e-25 126.0
18 TraesCS3D01G292700 chr7B 95.238 126 6 0 226 351 219658599 219658474 1.620000e-47 200.0
19 TraesCS3D01G292700 chr7B 96.296 108 4 0 117 224 678632488 678632381 7.580000e-41 178.0
20 TraesCS3D01G292700 chr7B 84.444 180 20 6 2270 2443 746714535 746714358 1.270000e-38 171.0
21 TraesCS3D01G292700 chr2D 92.593 135 10 0 215 349 421336406 421336272 7.530000e-46 195.0
22 TraesCS3D01G292700 chr2D 96.262 107 4 0 118 224 552189889 552189995 2.730000e-40 176.0
23 TraesCS3D01G292700 chr2D 83.978 181 23 4 2268 2443 17008986 17009165 4.560000e-38 169.0
24 TraesCS3D01G292700 chr7D 93.798 129 7 1 225 353 605155351 605155224 2.710000e-45 193.0
25 TraesCS3D01G292700 chr7D 93.860 114 6 1 111 224 598598460 598598572 1.270000e-38 171.0
26 TraesCS3D01G292700 chr6D 88.199 161 12 5 187 341 426048953 426049112 4.530000e-43 185.0
27 TraesCS3D01G292700 chr6D 96.262 107 4 0 118 224 160470775 160470669 2.730000e-40 176.0
28 TraesCS3D01G292700 chr6D 82.873 181 26 4 2267 2443 470624009 470623830 9.880000e-35 158.0
29 TraesCS3D01G292700 chr2B 88.816 152 15 2 226 377 45693750 45693601 4.530000e-43 185.0
30 TraesCS3D01G292700 chr5A 84.699 183 22 3 2266 2443 625759487 625759306 7.580000e-41 178.0
31 TraesCS3D01G292700 chr5A 97.115 104 3 0 121 224 14028411 14028308 2.730000e-40 176.0
32 TraesCS3D01G292700 chr6A 84.831 178 23 4 2268 2443 78477380 78477205 2.730000e-40 176.0
33 TraesCS3D01G292700 chr6A 85.542 166 19 3 2282 2443 559205020 559205184 4.560000e-38 169.0
34 TraesCS3D01G292700 chr6A 82.778 180 23 6 2270 2443 610949652 610949829 1.280000e-33 154.0
35 TraesCS3D01G292700 chr7A 95.413 109 4 1 116 224 343843710 343843817 3.530000e-39 172.0
36 TraesCS3D01G292700 chr2A 84.746 177 22 5 2269 2443 754367411 754367584 3.530000e-39 172.0
37 TraesCS3D01G292700 chr2A 84.746 177 22 5 2269 2443 754370614 754370787 3.530000e-39 172.0
38 TraesCS3D01G292700 chr1D 95.413 109 4 1 116 224 194139901 194139794 3.530000e-39 172.0
39 TraesCS3D01G292700 chr1D 94.643 112 5 1 113 224 418260680 418260790 3.530000e-39 172.0
40 TraesCS3D01G292700 chr1D 81.287 171 23 5 2278 2443 353186797 353186631 2.150000e-26 130.0
41 TraesCS3D01G292700 chr1D 79.058 191 28 9 2259 2443 245414529 245414345 1.300000e-23 121.0
42 TraesCS3D01G292700 chr1D 77.778 189 35 4 2259 2443 402942080 402942265 2.810000e-20 110.0
43 TraesCS3D01G292700 chr6B 82.682 179 25 3 2269 2443 703938208 703938032 1.280000e-33 154.0
44 TraesCS3D01G292700 chr4B 82.418 182 24 5 2268 2443 125426530 125426351 4.600000e-33 152.0
45 TraesCS3D01G292700 chr4B 82.022 178 27 3 2270 2443 135589133 135589309 2.140000e-31 147.0
46 TraesCS3D01G292700 chr5D 82.123 179 24 6 2270 2443 497871154 497870979 2.140000e-31 147.0
47 TraesCS3D01G292700 chrUn 81.461 178 29 1 2270 2443 354435869 354435692 2.770000e-30 143.0
48 TraesCS3D01G292700 chrUn 81.461 178 29 1 2270 2443 449403793 449403616 2.770000e-30 143.0
49 TraesCS3D01G292700 chrUn 80.899 178 30 1 2270 2443 42330499 42330322 1.290000e-28 137.0
50 TraesCS3D01G292700 chrUn 80.899 178 30 1 2270 2443 449372265 449372088 1.290000e-28 137.0
51 TraesCS3D01G292700 chrUn 91.304 69 6 0 2270 2338 475376804 475376872 7.860000e-16 95.3
52 TraesCS3D01G292700 chr1B 95.000 60 3 0 63 122 398802553 398802612 7.860000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G292700 chr3D 402745968 402748633 2665 True 4924.0 4924 100.0000 1 2666 1 chr3D.!!$R4 2665
1 TraesCS3D01G292700 chr3A 523607939 523609935 1996 True 1207.5 1646 90.0025 376 2271 2 chr3A.!!$R1 1895
2 TraesCS3D01G292700 chr3B 528420154 528426205 6051 True 701.0 1517 90.8700 400 2264 3 chr3B.!!$R2 1864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 450 0.109781 CCGCGCTATTGCAACAACTT 60.11 50.0 5.56 0.0 39.64 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 6611 0.025513 GAGCGCTTGCGTCTGTAATG 59.974 55.0 13.26 0.0 45.69 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.975218 AGTGTTAATACAGTCCATAATTTTCCT 57.025 29.630 5.08 0.00 32.39 3.36
41 42 9.990868 AATACAGTCCATAATTTTCCTAACCTT 57.009 29.630 0.00 0.00 0.00 3.50
42 43 9.990868 ATACAGTCCATAATTTTCCTAACCTTT 57.009 29.630 0.00 0.00 0.00 3.11
43 44 8.721133 ACAGTCCATAATTTTCCTAACCTTTT 57.279 30.769 0.00 0.00 0.00 2.27
44 45 9.154632 ACAGTCCATAATTTTCCTAACCTTTTT 57.845 29.630 0.00 0.00 0.00 1.94
95 96 2.251409 GGATAACCTCCGGCCTTTAC 57.749 55.000 0.00 0.00 33.29 2.01
96 97 1.487558 GGATAACCTCCGGCCTTTACA 59.512 52.381 0.00 0.00 33.29 2.41
97 98 2.105993 GGATAACCTCCGGCCTTTACAT 59.894 50.000 0.00 0.00 33.29 2.29
98 99 2.994186 TAACCTCCGGCCTTTACATC 57.006 50.000 0.00 0.00 0.00 3.06
99 100 0.988832 AACCTCCGGCCTTTACATCA 59.011 50.000 0.00 0.00 0.00 3.07
100 101 0.541863 ACCTCCGGCCTTTACATCAG 59.458 55.000 0.00 0.00 0.00 2.90
101 102 0.541863 CCTCCGGCCTTTACATCAGT 59.458 55.000 0.00 0.00 0.00 3.41
102 103 1.065418 CCTCCGGCCTTTACATCAGTT 60.065 52.381 0.00 0.00 0.00 3.16
103 104 2.009774 CTCCGGCCTTTACATCAGTTG 58.990 52.381 0.00 0.00 0.00 3.16
104 105 1.626321 TCCGGCCTTTACATCAGTTGA 59.374 47.619 0.00 0.00 0.00 3.18
105 106 2.238646 TCCGGCCTTTACATCAGTTGAT 59.761 45.455 0.00 0.00 34.56 2.57
114 115 1.840181 CATCAGTTGATGCATGCAGC 58.160 50.000 28.44 28.44 44.44 5.25
115 116 0.744874 ATCAGTTGATGCATGCAGCC 59.255 50.000 31.30 22.02 44.83 4.85
116 117 0.609681 TCAGTTGATGCATGCAGCCA 60.610 50.000 31.30 24.21 44.83 4.75
117 118 0.459899 CAGTTGATGCATGCAGCCAT 59.540 50.000 31.30 15.37 44.83 4.40
118 119 1.679153 CAGTTGATGCATGCAGCCATA 59.321 47.619 31.30 15.09 44.83 2.74
119 120 2.296190 CAGTTGATGCATGCAGCCATAT 59.704 45.455 31.30 11.44 44.83 1.78
120 121 2.963101 AGTTGATGCATGCAGCCATATT 59.037 40.909 31.30 10.63 44.83 1.28
121 122 4.022676 CAGTTGATGCATGCAGCCATATTA 60.023 41.667 31.30 10.43 44.83 0.98
122 123 4.022589 AGTTGATGCATGCAGCCATATTAC 60.023 41.667 31.30 20.60 44.83 1.89
123 124 3.758425 TGATGCATGCAGCCATATTACT 58.242 40.909 31.30 8.21 44.83 2.24
124 125 3.754850 TGATGCATGCAGCCATATTACTC 59.245 43.478 31.30 17.10 44.83 2.59
125 126 2.507484 TGCATGCAGCCATATTACTCC 58.493 47.619 18.46 0.00 44.83 3.85
126 127 1.815003 GCATGCAGCCATATTACTCCC 59.185 52.381 14.21 0.00 37.23 4.30
127 128 2.815215 GCATGCAGCCATATTACTCCCA 60.815 50.000 14.21 0.00 37.23 4.37
128 129 2.638480 TGCAGCCATATTACTCCCAC 57.362 50.000 0.00 0.00 0.00 4.61
129 130 1.142870 TGCAGCCATATTACTCCCACC 59.857 52.381 0.00 0.00 0.00 4.61
130 131 1.878102 GCAGCCATATTACTCCCACCG 60.878 57.143 0.00 0.00 0.00 4.94
131 132 1.416401 CAGCCATATTACTCCCACCGT 59.584 52.381 0.00 0.00 0.00 4.83
132 133 1.692519 AGCCATATTACTCCCACCGTC 59.307 52.381 0.00 0.00 0.00 4.79
133 134 1.270678 GCCATATTACTCCCACCGTCC 60.271 57.143 0.00 0.00 0.00 4.79
134 135 1.346722 CCATATTACTCCCACCGTCCC 59.653 57.143 0.00 0.00 0.00 4.46
135 136 2.043992 CATATTACTCCCACCGTCCCA 58.956 52.381 0.00 0.00 0.00 4.37
136 137 2.250921 TATTACTCCCACCGTCCCAA 57.749 50.000 0.00 0.00 0.00 4.12
137 138 1.364269 ATTACTCCCACCGTCCCAAA 58.636 50.000 0.00 0.00 0.00 3.28
138 139 1.138568 TTACTCCCACCGTCCCAAAA 58.861 50.000 0.00 0.00 0.00 2.44
139 140 1.364269 TACTCCCACCGTCCCAAAAT 58.636 50.000 0.00 0.00 0.00 1.82
140 141 0.481128 ACTCCCACCGTCCCAAAATT 59.519 50.000 0.00 0.00 0.00 1.82
141 142 1.173913 CTCCCACCGTCCCAAAATTC 58.826 55.000 0.00 0.00 0.00 2.17
142 143 0.774908 TCCCACCGTCCCAAAATTCT 59.225 50.000 0.00 0.00 0.00 2.40
143 144 1.146152 TCCCACCGTCCCAAAATTCTT 59.854 47.619 0.00 0.00 0.00 2.52
144 145 1.272212 CCCACCGTCCCAAAATTCTTG 59.728 52.381 0.00 0.00 0.00 3.02
145 146 1.960689 CCACCGTCCCAAAATTCTTGT 59.039 47.619 0.00 0.00 0.00 3.16
146 147 2.030274 CCACCGTCCCAAAATTCTTGTC 60.030 50.000 0.00 0.00 0.00 3.18
147 148 2.884639 CACCGTCCCAAAATTCTTGTCT 59.115 45.455 0.00 0.00 0.00 3.41
148 149 3.317993 CACCGTCCCAAAATTCTTGTCTT 59.682 43.478 0.00 0.00 0.00 3.01
149 150 4.517453 CACCGTCCCAAAATTCTTGTCTTA 59.483 41.667 0.00 0.00 0.00 2.10
150 151 4.760204 ACCGTCCCAAAATTCTTGTCTTAG 59.240 41.667 0.00 0.00 0.00 2.18
151 152 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
152 153 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
153 154 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
154 155 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
155 156 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
156 157 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
157 158 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
158 159 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
221 222 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
222 223 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
223 224 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
224 225 8.693120 TCCGTATCTAGACAAATCTAAGACAT 57.307 34.615 0.00 0.00 36.98 3.06
225 226 8.784994 TCCGTATCTAGACAAATCTAAGACATC 58.215 37.037 0.00 0.00 36.98 3.06
226 227 8.024285 CCGTATCTAGACAAATCTAAGACATCC 58.976 40.741 0.00 0.00 36.98 3.51
227 228 8.788806 CGTATCTAGACAAATCTAAGACATCCT 58.211 37.037 0.00 0.00 36.98 3.24
229 230 7.589958 TCTAGACAAATCTAAGACATCCTCC 57.410 40.000 0.00 0.00 36.98 4.30
230 231 5.269505 AGACAAATCTAAGACATCCTCCG 57.730 43.478 0.00 0.00 31.46 4.63
231 232 4.712337 AGACAAATCTAAGACATCCTCCGT 59.288 41.667 0.00 0.00 31.46 4.69
232 233 5.012328 ACAAATCTAAGACATCCTCCGTC 57.988 43.478 0.00 0.00 0.00 4.79
233 234 4.141914 ACAAATCTAAGACATCCTCCGTCC 60.142 45.833 0.00 0.00 33.70 4.79
234 235 2.068834 TCTAAGACATCCTCCGTCCC 57.931 55.000 0.00 0.00 33.70 4.46
235 236 1.286849 TCTAAGACATCCTCCGTCCCA 59.713 52.381 0.00 0.00 33.70 4.37
236 237 2.108168 CTAAGACATCCTCCGTCCCAA 58.892 52.381 0.00 0.00 33.70 4.12
237 238 1.358152 AAGACATCCTCCGTCCCAAA 58.642 50.000 0.00 0.00 33.70 3.28
238 239 1.358152 AGACATCCTCCGTCCCAAAA 58.642 50.000 0.00 0.00 33.70 2.44
239 240 1.916181 AGACATCCTCCGTCCCAAAAT 59.084 47.619 0.00 0.00 33.70 1.82
240 241 2.308866 AGACATCCTCCGTCCCAAAATT 59.691 45.455 0.00 0.00 33.70 1.82
241 242 2.683362 GACATCCTCCGTCCCAAAATTC 59.317 50.000 0.00 0.00 0.00 2.17
242 243 2.308866 ACATCCTCCGTCCCAAAATTCT 59.691 45.455 0.00 0.00 0.00 2.40
243 244 3.245264 ACATCCTCCGTCCCAAAATTCTT 60.245 43.478 0.00 0.00 0.00 2.52
244 245 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
245 246 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
246 247 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
247 248 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
248 249 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
249 250 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
250 251 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
251 252 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
252 253 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
253 254 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
254 255 7.335924 CCGTCCCAAAATTCTTGTCTTAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
255 256 8.391106 CGTCCCAAAATTCTTGTCTTAGATTAG 58.609 37.037 0.00 0.00 0.00 1.73
256 257 9.232473 GTCCCAAAATTCTTGTCTTAGATTAGT 57.768 33.333 0.00 0.00 0.00 2.24
257 258 9.449719 TCCCAAAATTCTTGTCTTAGATTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
258 259 9.454859 CCCAAAATTCTTGTCTTAGATTAGTCT 57.545 33.333 0.00 0.00 38.52 3.24
301 302 9.620660 AATTTTAAAACGTGACTTGATACATCC 57.379 29.630 1.97 0.00 0.00 3.51
302 303 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
303 304 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
304 305 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
305 306 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
306 307 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
307 308 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
308 309 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
309 310 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
310 311 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
311 312 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
312 313 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
313 314 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
314 315 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
315 316 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
334 335 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
335 336 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
336 337 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
337 338 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
338 339 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
339 340 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
340 341 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
341 342 3.072476 AGACAAGAATTTTGGGACGGAGA 59.928 43.478 0.00 0.00 0.00 3.71
342 343 3.818773 GACAAGAATTTTGGGACGGAGAA 59.181 43.478 0.00 0.00 0.00 2.87
343 344 4.211920 ACAAGAATTTTGGGACGGAGAAA 58.788 39.130 0.00 0.00 0.00 2.52
344 345 4.278419 ACAAGAATTTTGGGACGGAGAAAG 59.722 41.667 0.00 0.00 0.00 2.62
345 346 4.100279 AGAATTTTGGGACGGAGAAAGT 57.900 40.909 0.00 0.00 0.00 2.66
346 347 5.237236 AGAATTTTGGGACGGAGAAAGTA 57.763 39.130 0.00 0.00 0.00 2.24
347 348 5.816682 AGAATTTTGGGACGGAGAAAGTAT 58.183 37.500 0.00 0.00 0.00 2.12
348 349 6.246163 AGAATTTTGGGACGGAGAAAGTATT 58.754 36.000 0.00 0.00 0.00 1.89
349 350 7.399634 AGAATTTTGGGACGGAGAAAGTATTA 58.600 34.615 0.00 0.00 0.00 0.98
350 351 7.886446 AGAATTTTGGGACGGAGAAAGTATTAA 59.114 33.333 0.00 0.00 0.00 1.40
351 352 8.411991 AATTTTGGGACGGAGAAAGTATTAAA 57.588 30.769 0.00 0.00 0.00 1.52
352 353 7.820578 TTTTGGGACGGAGAAAGTATTAAAA 57.179 32.000 0.00 0.00 0.00 1.52
353 354 7.820578 TTTGGGACGGAGAAAGTATTAAAAA 57.179 32.000 0.00 0.00 0.00 1.94
354 355 7.443259 TTGGGACGGAGAAAGTATTAAAAAG 57.557 36.000 0.00 0.00 0.00 2.27
355 356 5.413523 TGGGACGGAGAAAGTATTAAAAAGC 59.586 40.000 0.00 0.00 0.00 3.51
356 357 5.446875 GGGACGGAGAAAGTATTAAAAAGCG 60.447 44.000 0.00 0.00 0.00 4.68
357 358 4.966249 ACGGAGAAAGTATTAAAAAGCGC 58.034 39.130 0.00 0.00 0.00 5.92
358 359 4.453136 ACGGAGAAAGTATTAAAAAGCGCA 59.547 37.500 11.47 0.00 0.00 6.09
359 360 5.049267 ACGGAGAAAGTATTAAAAAGCGCAA 60.049 36.000 11.47 0.00 0.00 4.85
360 361 5.283012 CGGAGAAAGTATTAAAAAGCGCAAC 59.717 40.000 11.47 0.00 0.00 4.17
361 362 6.146898 GGAGAAAGTATTAAAAAGCGCAACA 58.853 36.000 11.47 0.00 0.00 3.33
362 363 6.639279 GGAGAAAGTATTAAAAAGCGCAACAA 59.361 34.615 11.47 0.00 0.00 2.83
363 364 7.168469 GGAGAAAGTATTAAAAAGCGCAACAAA 59.832 33.333 11.47 0.00 0.00 2.83
364 365 8.061125 AGAAAGTATTAAAAAGCGCAACAAAG 57.939 30.769 11.47 0.00 0.00 2.77
365 366 7.704899 AGAAAGTATTAAAAAGCGCAACAAAGT 59.295 29.630 11.47 0.00 0.00 2.66
366 367 6.986424 AGTATTAAAAAGCGCAACAAAGTC 57.014 33.333 11.47 0.00 0.00 3.01
367 368 6.735130 AGTATTAAAAAGCGCAACAAAGTCT 58.265 32.000 11.47 0.00 0.00 3.24
368 369 6.856426 AGTATTAAAAAGCGCAACAAAGTCTC 59.144 34.615 11.47 0.00 0.00 3.36
369 370 3.502191 AAAAAGCGCAACAAAGTCTCA 57.498 38.095 11.47 0.00 0.00 3.27
370 371 2.475200 AAAGCGCAACAAAGTCTCAC 57.525 45.000 11.47 0.00 0.00 3.51
371 372 1.378531 AAGCGCAACAAAGTCTCACA 58.621 45.000 11.47 0.00 0.00 3.58
372 373 1.378531 AGCGCAACAAAGTCTCACAA 58.621 45.000 11.47 0.00 0.00 3.33
373 374 1.949525 AGCGCAACAAAGTCTCACAAT 59.050 42.857 11.47 0.00 0.00 2.71
374 375 2.031682 AGCGCAACAAAGTCTCACAATC 60.032 45.455 11.47 0.00 0.00 2.67
382 383 5.192927 ACAAAGTCTCACAATCCAAGTGAA 58.807 37.500 0.00 0.00 44.60 3.18
429 430 7.872113 ACAGGAAAGGATCTTCATGAATTAC 57.128 36.000 8.96 0.00 38.98 1.89
439 440 3.120321 TCATGAATTACCCGCGCTATT 57.880 42.857 5.56 0.00 0.00 1.73
440 441 2.805671 TCATGAATTACCCGCGCTATTG 59.194 45.455 5.56 0.00 0.00 1.90
441 442 0.941542 TGAATTACCCGCGCTATTGC 59.058 50.000 5.56 0.00 0.00 3.56
444 445 0.661020 ATTACCCGCGCTATTGCAAC 59.339 50.000 5.56 0.00 39.64 4.17
445 446 0.673956 TTACCCGCGCTATTGCAACA 60.674 50.000 5.56 0.00 39.64 3.33
446 447 0.673956 TACCCGCGCTATTGCAACAA 60.674 50.000 5.56 0.00 39.64 2.83
447 448 1.514014 CCCGCGCTATTGCAACAAC 60.514 57.895 5.56 0.00 39.64 3.32
448 449 1.501741 CCGCGCTATTGCAACAACT 59.498 52.632 5.56 0.00 39.64 3.16
449 450 0.109781 CCGCGCTATTGCAACAACTT 60.110 50.000 5.56 0.00 39.64 2.66
450 451 1.129624 CCGCGCTATTGCAACAACTTA 59.870 47.619 5.56 0.00 39.64 2.24
451 452 2.413502 CCGCGCTATTGCAACAACTTAA 60.414 45.455 5.56 0.00 39.64 1.85
452 453 2.840176 CGCGCTATTGCAACAACTTAAG 59.160 45.455 5.56 0.00 39.64 1.85
660 662 3.377172 TCTGATCGAGCAATTAGTCGTGA 59.623 43.478 4.32 0.00 37.46 4.35
692 694 0.871057 GGAGCACAGAAGCAGAACAC 59.129 55.000 0.00 0.00 36.85 3.32
744 756 5.728637 AGTTAATGCAAAAAGGAAGAGGG 57.271 39.130 0.00 0.00 0.00 4.30
809 821 2.763215 GGCCACTGGGTCAATCCA 59.237 61.111 0.00 0.00 39.19 3.41
830 842 2.280592 GTGCCCGACGTGTCCTTT 60.281 61.111 0.00 0.00 0.00 3.11
841 853 3.203716 ACGTGTCCTTTCTTGTCCTTTC 58.796 45.455 0.00 0.00 0.00 2.62
859 871 0.237235 TCCACACAAAAAGCGATCGC 59.763 50.000 32.15 32.15 42.33 4.58
948 960 5.759506 TCCTTGTCATCTCTTATCGTCTC 57.240 43.478 0.00 0.00 0.00 3.36
951 963 3.542648 TGTCATCTCTTATCGTCTCCGT 58.457 45.455 0.00 0.00 35.01 4.69
956 968 1.368969 CTTATCGTCTCCGTCGCCG 60.369 63.158 0.00 0.00 35.01 6.46
981 993 5.394663 CCTCCTATAAATACCGCTGATCCAG 60.395 48.000 0.00 0.00 34.12 3.86
989 1001 1.047002 CCGCTGATCCAGGAAGAGAT 58.953 55.000 0.00 0.00 31.21 2.75
991 1003 2.230992 CCGCTGATCCAGGAAGAGATAG 59.769 54.545 0.00 0.00 31.21 2.08
996 1014 5.163663 GCTGATCCAGGAAGAGATAGATACG 60.164 48.000 0.00 0.00 31.21 3.06
1019 1037 2.279741 CACACACCATCGATCGGAAAT 58.720 47.619 16.41 0.00 0.00 2.17
1024 1042 2.738846 CACCATCGATCGGAAATCATCC 59.261 50.000 16.41 0.00 45.57 3.51
1040 1058 4.639078 TCATCCATCACAGACAGGAAAA 57.361 40.909 0.00 0.00 33.17 2.29
1049 1067 4.061596 CACAGACAGGAAAACCTCTCTTC 58.938 47.826 0.00 0.00 0.00 2.87
1050 1068 3.071747 ACAGACAGGAAAACCTCTCTTCC 59.928 47.826 0.00 0.00 41.32 3.46
1053 1071 2.037381 ACAGGAAAACCTCTCTTCCGTC 59.963 50.000 0.00 0.00 44.94 4.79
1094 1112 2.562635 CGTCCTCGTCTCTAGATCCAA 58.437 52.381 0.00 0.00 0.00 3.53
1095 1113 2.943690 CGTCCTCGTCTCTAGATCCAAA 59.056 50.000 0.00 0.00 0.00 3.28
1135 1153 0.743701 CTGCTGTCCTCTGCATGGTC 60.744 60.000 0.00 1.87 44.85 4.02
1142 1160 2.093288 GTCCTCTGCATGGTCTTGATCA 60.093 50.000 0.00 0.00 0.00 2.92
1144 1162 3.139850 CCTCTGCATGGTCTTGATCATC 58.860 50.000 0.00 0.00 0.00 2.92
1148 1166 1.263484 GCATGGTCTTGATCATCAGCG 59.737 52.381 0.00 0.00 0.00 5.18
1149 1167 1.263484 CATGGTCTTGATCATCAGCGC 59.737 52.381 0.00 0.00 0.00 5.92
1267 1294 3.081409 CGTCCGGGGAGGTGGAAT 61.081 66.667 0.00 0.00 41.99 3.01
1268 1295 1.759299 CGTCCGGGGAGGTGGAATA 60.759 63.158 0.00 0.00 41.99 1.75
1269 1296 1.828081 GTCCGGGGAGGTGGAATAC 59.172 63.158 0.00 0.00 41.99 1.89
1452 1483 5.280215 GGCAGCCTCTATATATCAGGTGTTT 60.280 44.000 3.29 0.00 0.00 2.83
1503 1535 0.108804 TTTGGTCGAAGGAGCTAGCG 60.109 55.000 9.55 0.00 41.26 4.26
1504 1536 1.248785 TTGGTCGAAGGAGCTAGCGT 61.249 55.000 9.55 0.00 41.26 5.07
1508 1540 1.875813 CGAAGGAGCTAGCGTGCTG 60.876 63.158 9.55 0.00 44.17 4.41
1567 1601 3.416119 TGTGCATGCTACGTACTCTAC 57.584 47.619 20.33 4.86 0.00 2.59
1568 1602 2.750712 TGTGCATGCTACGTACTCTACA 59.249 45.455 20.33 7.66 0.00 2.74
1569 1603 3.191791 TGTGCATGCTACGTACTCTACAA 59.808 43.478 20.33 0.00 0.00 2.41
1570 1604 3.791887 GTGCATGCTACGTACTCTACAAG 59.208 47.826 20.33 0.00 0.00 3.16
1571 1605 3.442625 TGCATGCTACGTACTCTACAAGT 59.557 43.478 20.33 0.00 42.33 3.16
1572 1606 4.036352 GCATGCTACGTACTCTACAAGTC 58.964 47.826 11.37 0.00 39.55 3.01
1573 1607 4.201930 GCATGCTACGTACTCTACAAGTCT 60.202 45.833 11.37 0.00 39.55 3.24
1574 1608 5.007430 GCATGCTACGTACTCTACAAGTCTA 59.993 44.000 11.37 0.00 39.55 2.59
1582 1616 6.072098 CGTACTCTACAAGTCTACATATGCG 58.928 44.000 1.58 0.00 39.55 4.73
1645 1684 6.827251 ACTAGTTCACTACTCCAATCGACATA 59.173 38.462 0.00 0.00 38.33 2.29
1646 1685 6.716934 AGTTCACTACTCCAATCGACATAT 57.283 37.500 0.00 0.00 28.23 1.78
1692 1976 1.017177 AAGTTGAAGCGCGCCGATAA 61.017 50.000 30.33 15.41 0.00 1.75
1707 2066 7.734726 GCGCGCCGATAAATATAATAATACTTC 59.265 37.037 23.24 0.00 0.00 3.01
1724 2309 2.133553 CTTCTGTAGCTGGATCATGCG 58.866 52.381 0.00 0.00 0.00 4.73
1725 2310 0.249615 TCTGTAGCTGGATCATGCGC 60.250 55.000 0.00 0.00 0.00 6.09
1758 2768 9.153721 TCAATGAAAATGACATTTTTATGCTCC 57.846 29.630 23.84 12.86 42.15 4.70
1759 2769 8.937884 CAATGAAAATGACATTTTTATGCTCCA 58.062 29.630 23.84 16.81 42.15 3.86
1784 2807 3.161866 GTGGTGTGGGGACATTTTGTAT 58.838 45.455 0.00 0.00 46.14 2.29
1842 2865 2.093288 AGCGATCATGGTGAACATCTGT 60.093 45.455 0.00 0.00 37.84 3.41
1851 3389 2.039084 GGTGAACATCTGTCCAGACCTT 59.961 50.000 0.00 0.00 40.75 3.50
1910 3448 1.084370 GGAGTCGCATGAACGGAAGG 61.084 60.000 0.00 0.00 0.00 3.46
1926 3464 0.673644 AAGGATCACGCGGAAGGTTG 60.674 55.000 12.47 0.00 0.00 3.77
1953 6277 8.080083 TGCTAACTTACTTTAGTGCAGTTAAC 57.920 34.615 0.00 0.00 36.02 2.01
1986 6310 7.934120 GCAACTTTCCATAACTCCATAGACTAT 59.066 37.037 0.00 0.00 0.00 2.12
2239 6569 4.075854 TGCGGCGTGGCATCTGTA 62.076 61.111 9.37 0.00 38.17 2.74
2253 6583 1.004200 CTGTAACCGGCCGTTCCTT 60.004 57.895 26.12 11.81 35.79 3.36
2257 6587 2.453379 TAACCGGCCGTTCCTTGGAC 62.453 60.000 26.12 0.00 35.79 4.02
2268 6598 0.968901 TCCTTGGACCGAGCACGTAT 60.969 55.000 2.75 0.00 37.88 3.06
2271 6601 2.073816 CTTGGACCGAGCACGTATTTT 58.926 47.619 2.18 0.00 37.88 1.82
2272 6602 2.172851 TGGACCGAGCACGTATTTTT 57.827 45.000 2.18 0.00 37.88 1.94
2292 6622 2.587612 TTTGAACGCATTACAGACGC 57.412 45.000 0.00 0.00 0.00 5.19
2293 6623 1.503294 TTGAACGCATTACAGACGCA 58.497 45.000 0.00 0.00 0.00 5.24
2294 6624 1.503294 TGAACGCATTACAGACGCAA 58.497 45.000 0.00 0.00 0.00 4.85
2296 6626 0.165944 AACGCATTACAGACGCAAGC 59.834 50.000 0.00 0.00 45.62 4.01
2297 6627 1.296145 CGCATTACAGACGCAAGCG 60.296 57.895 13.50 13.50 46.03 4.68
2298 6628 1.581147 GCATTACAGACGCAAGCGC 60.581 57.895 15.09 0.00 44.19 5.92
2299 6629 1.970917 GCATTACAGACGCAAGCGCT 61.971 55.000 15.09 2.64 44.19 5.92
2300 6630 0.025513 CATTACAGACGCAAGCGCTC 59.974 55.000 12.06 11.06 44.19 5.03
2301 6631 0.389817 ATTACAGACGCAAGCGCTCA 60.390 50.000 12.06 0.83 44.19 4.26
2302 6632 0.389817 TTACAGACGCAAGCGCTCAT 60.390 50.000 12.06 0.00 44.19 2.90
2303 6633 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
2304 6634 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
2305 6635 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
2306 6636 2.288457 ACAGACGCAAGCGCTCATATAT 60.288 45.455 12.06 0.00 44.19 0.86
2307 6637 3.057526 ACAGACGCAAGCGCTCATATATA 60.058 43.478 12.06 0.00 44.19 0.86
2308 6638 3.301906 CAGACGCAAGCGCTCATATATAC 59.698 47.826 12.06 0.00 44.19 1.47
2309 6639 2.251040 ACGCAAGCGCTCATATATACG 58.749 47.619 12.06 2.40 44.19 3.06
2310 6640 2.251040 CGCAAGCGCTCATATATACGT 58.749 47.619 12.06 0.00 35.30 3.57
2311 6641 2.026860 CGCAAGCGCTCATATATACGTG 59.973 50.000 12.06 1.45 35.30 4.49
2312 6642 2.222596 GCAAGCGCTCATATATACGTGC 60.223 50.000 12.06 9.27 34.30 5.34
2313 6643 2.986479 CAAGCGCTCATATATACGTGCA 59.014 45.455 12.06 0.00 35.49 4.57
2314 6644 3.510388 AGCGCTCATATATACGTGCAT 57.490 42.857 2.64 0.00 35.49 3.96
2315 6645 4.632538 AGCGCTCATATATACGTGCATA 57.367 40.909 2.64 0.00 35.49 3.14
2316 6646 4.352039 AGCGCTCATATATACGTGCATAC 58.648 43.478 2.64 0.43 35.49 2.39
2317 6647 4.102649 GCGCTCATATATACGTGCATACA 58.897 43.478 0.00 0.00 33.41 2.29
2318 6648 4.027621 GCGCTCATATATACGTGCATACAC 60.028 45.833 0.00 0.00 43.76 2.90
2319 6649 5.332707 CGCTCATATATACGTGCATACACT 58.667 41.667 0.00 0.00 45.10 3.55
2320 6650 5.452623 CGCTCATATATACGTGCATACACTC 59.547 44.000 0.00 0.00 45.10 3.51
2321 6651 6.322491 GCTCATATATACGTGCATACACTCA 58.678 40.000 0.00 0.00 45.10 3.41
2322 6652 6.251589 GCTCATATATACGTGCATACACTCAC 59.748 42.308 0.00 0.00 45.10 3.51
2323 6653 6.617879 TCATATATACGTGCATACACTCACC 58.382 40.000 0.00 0.00 45.10 4.02
2324 6654 2.596904 ATACGTGCATACACTCACCC 57.403 50.000 0.00 0.00 45.10 4.61
2325 6655 0.533491 TACGTGCATACACTCACCCC 59.467 55.000 0.00 0.00 45.10 4.95
2326 6656 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
2327 6657 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
2328 6658 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
2329 6659 2.626266 CGTGCATACACTCACCCCTATA 59.374 50.000 0.00 0.00 45.10 1.31
2330 6660 3.069016 CGTGCATACACTCACCCCTATAA 59.931 47.826 0.00 0.00 45.10 0.98
2331 6661 4.442332 CGTGCATACACTCACCCCTATAAA 60.442 45.833 0.00 0.00 45.10 1.40
2332 6662 4.814771 GTGCATACACTCACCCCTATAAAC 59.185 45.833 0.00 0.00 43.85 2.01
2333 6663 4.471747 TGCATACACTCACCCCTATAAACA 59.528 41.667 0.00 0.00 0.00 2.83
2334 6664 4.814771 GCATACACTCACCCCTATAAACAC 59.185 45.833 0.00 0.00 0.00 3.32
2335 6665 5.628200 GCATACACTCACCCCTATAAACACA 60.628 44.000 0.00 0.00 0.00 3.72
2336 6666 4.281898 ACACTCACCCCTATAAACACAC 57.718 45.455 0.00 0.00 0.00 3.82
2337 6667 3.649023 ACACTCACCCCTATAAACACACA 59.351 43.478 0.00 0.00 0.00 3.72
2338 6668 4.000988 CACTCACCCCTATAAACACACAC 58.999 47.826 0.00 0.00 0.00 3.82
2339 6669 3.649023 ACTCACCCCTATAAACACACACA 59.351 43.478 0.00 0.00 0.00 3.72
2340 6670 4.000988 CTCACCCCTATAAACACACACAC 58.999 47.826 0.00 0.00 0.00 3.82
2341 6671 3.649023 TCACCCCTATAAACACACACACT 59.351 43.478 0.00 0.00 0.00 3.55
2342 6672 4.000988 CACCCCTATAAACACACACACTC 58.999 47.826 0.00 0.00 0.00 3.51
2343 6673 3.908103 ACCCCTATAAACACACACACTCT 59.092 43.478 0.00 0.00 0.00 3.24
2344 6674 4.020485 ACCCCTATAAACACACACACTCTC 60.020 45.833 0.00 0.00 0.00 3.20
2345 6675 4.223032 CCCCTATAAACACACACACTCTCT 59.777 45.833 0.00 0.00 0.00 3.10
2346 6676 5.421056 CCCCTATAAACACACACACTCTCTA 59.579 44.000 0.00 0.00 0.00 2.43
2347 6677 6.098409 CCCCTATAAACACACACACTCTCTAT 59.902 42.308 0.00 0.00 0.00 1.98
2348 6678 7.203910 CCCTATAAACACACACACTCTCTATC 58.796 42.308 0.00 0.00 0.00 2.08
2349 6679 7.203910 CCTATAAACACACACACTCTCTATCC 58.796 42.308 0.00 0.00 0.00 2.59
2350 6680 4.955811 AAACACACACACTCTCTATCCA 57.044 40.909 0.00 0.00 0.00 3.41
2351 6681 5.489792 AAACACACACACTCTCTATCCAT 57.510 39.130 0.00 0.00 0.00 3.41
2352 6682 6.605471 AAACACACACACTCTCTATCCATA 57.395 37.500 0.00 0.00 0.00 2.74
2353 6683 6.798427 AACACACACACTCTCTATCCATAT 57.202 37.500 0.00 0.00 0.00 1.78
2354 6684 6.154203 ACACACACACTCTCTATCCATATG 57.846 41.667 0.00 0.00 0.00 1.78
2355 6685 5.893824 ACACACACACTCTCTATCCATATGA 59.106 40.000 3.65 0.00 0.00 2.15
2356 6686 6.040278 ACACACACACTCTCTATCCATATGAG 59.960 42.308 3.65 0.00 0.00 2.90
2357 6687 5.010516 ACACACACTCTCTATCCATATGAGC 59.989 44.000 3.65 0.00 0.00 4.26
2358 6688 5.010415 CACACACTCTCTATCCATATGAGCA 59.990 44.000 3.65 0.00 0.00 4.26
2359 6689 5.010516 ACACACTCTCTATCCATATGAGCAC 59.989 44.000 3.65 0.00 0.00 4.40
2360 6690 5.243507 CACACTCTCTATCCATATGAGCACT 59.756 44.000 3.65 0.00 0.00 4.40
2361 6691 5.837979 ACACTCTCTATCCATATGAGCACTT 59.162 40.000 3.65 0.00 0.00 3.16
2362 6692 6.015519 ACACTCTCTATCCATATGAGCACTTC 60.016 42.308 3.65 0.00 0.00 3.01
2363 6693 5.480073 ACTCTCTATCCATATGAGCACTTCC 59.520 44.000 3.65 0.00 0.00 3.46
2364 6694 4.460731 TCTCTATCCATATGAGCACTTCCG 59.539 45.833 3.65 0.00 0.00 4.30
2365 6695 4.407365 TCTATCCATATGAGCACTTCCGA 58.593 43.478 3.65 0.00 0.00 4.55
2366 6696 3.674528 ATCCATATGAGCACTTCCGAG 57.325 47.619 3.65 0.00 0.00 4.63
2367 6697 2.666317 TCCATATGAGCACTTCCGAGA 58.334 47.619 3.65 0.00 0.00 4.04
2368 6698 2.625314 TCCATATGAGCACTTCCGAGAG 59.375 50.000 3.65 0.00 0.00 3.20
2369 6699 2.625314 CCATATGAGCACTTCCGAGAGA 59.375 50.000 3.65 0.00 0.00 3.10
2370 6700 3.551863 CCATATGAGCACTTCCGAGAGAC 60.552 52.174 3.65 0.00 0.00 3.36
2371 6701 1.846007 ATGAGCACTTCCGAGAGACT 58.154 50.000 0.00 0.00 0.00 3.24
2372 6702 0.884514 TGAGCACTTCCGAGAGACTG 59.115 55.000 0.00 0.00 0.00 3.51
2373 6703 1.169577 GAGCACTTCCGAGAGACTGA 58.830 55.000 0.00 0.00 0.00 3.41
2374 6704 1.132262 GAGCACTTCCGAGAGACTGAG 59.868 57.143 0.00 0.00 0.00 3.35
2375 6705 0.457681 GCACTTCCGAGAGACTGAGC 60.458 60.000 0.00 0.00 0.00 4.26
2376 6706 0.172352 CACTTCCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 0.00 4.70
2377 6707 0.968393 ACTTCCGAGAGACTGAGCCC 60.968 60.000 0.00 0.00 0.00 5.19
2378 6708 1.999071 CTTCCGAGAGACTGAGCCCG 61.999 65.000 0.00 0.00 0.00 6.13
2379 6709 4.200283 CCGAGAGACTGAGCCCGC 62.200 72.222 0.00 0.00 0.00 6.13
2380 6710 3.443925 CGAGAGACTGAGCCCGCA 61.444 66.667 0.00 0.00 0.00 5.69
2381 6711 2.780094 CGAGAGACTGAGCCCGCAT 61.780 63.158 0.00 0.00 0.00 4.73
2382 6712 1.448119 CGAGAGACTGAGCCCGCATA 61.448 60.000 0.00 0.00 0.00 3.14
2383 6713 0.965439 GAGAGACTGAGCCCGCATAT 59.035 55.000 0.00 0.00 0.00 1.78
2384 6714 0.965439 AGAGACTGAGCCCGCATATC 59.035 55.000 0.00 0.00 0.00 1.63
2385 6715 0.676184 GAGACTGAGCCCGCATATCA 59.324 55.000 0.00 0.00 0.00 2.15
2386 6716 1.274728 GAGACTGAGCCCGCATATCAT 59.725 52.381 0.00 0.00 0.00 2.45
2387 6717 1.696336 AGACTGAGCCCGCATATCATT 59.304 47.619 0.00 0.00 0.00 2.57
2388 6718 2.105477 AGACTGAGCCCGCATATCATTT 59.895 45.455 0.00 0.00 0.00 2.32
2389 6719 2.880890 GACTGAGCCCGCATATCATTTT 59.119 45.455 0.00 0.00 0.00 1.82
2390 6720 2.620115 ACTGAGCCCGCATATCATTTTG 59.380 45.455 0.00 0.00 0.00 2.44
2391 6721 2.880268 CTGAGCCCGCATATCATTTTGA 59.120 45.455 0.00 0.00 0.00 2.69
2392 6722 2.880268 TGAGCCCGCATATCATTTTGAG 59.120 45.455 0.00 0.00 0.00 3.02
2393 6723 3.141398 GAGCCCGCATATCATTTTGAGA 58.859 45.455 0.00 0.00 0.00 3.27
2394 6724 3.755378 GAGCCCGCATATCATTTTGAGAT 59.245 43.478 0.00 0.00 0.00 2.75
2395 6725 4.147321 AGCCCGCATATCATTTTGAGATT 58.853 39.130 0.00 0.00 0.00 2.40
2396 6726 4.586001 AGCCCGCATATCATTTTGAGATTT 59.414 37.500 0.00 0.00 0.00 2.17
2397 6727 5.069516 AGCCCGCATATCATTTTGAGATTTT 59.930 36.000 0.00 0.00 0.00 1.82
2398 6728 6.265196 AGCCCGCATATCATTTTGAGATTTTA 59.735 34.615 0.00 0.00 0.00 1.52
2399 6729 6.363357 GCCCGCATATCATTTTGAGATTTTAC 59.637 38.462 0.00 0.00 0.00 2.01
2400 6730 6.578545 CCCGCATATCATTTTGAGATTTTACG 59.421 38.462 0.00 0.00 0.00 3.18
2401 6731 7.351981 CCGCATATCATTTTGAGATTTTACGA 58.648 34.615 0.00 0.00 0.00 3.43
2402 6732 7.855409 CCGCATATCATTTTGAGATTTTACGAA 59.145 33.333 0.00 0.00 0.00 3.85
2403 6733 8.886080 CGCATATCATTTTGAGATTTTACGAAG 58.114 33.333 0.00 0.00 0.00 3.79
2420 6750 5.100751 ACGAAGTAACCGTATAATCCTCG 57.899 43.478 0.00 0.00 41.94 4.63
2421 6751 4.576463 ACGAAGTAACCGTATAATCCTCGT 59.424 41.667 0.00 0.00 41.94 4.18
2422 6752 5.142962 CGAAGTAACCGTATAATCCTCGTC 58.857 45.833 0.00 0.00 0.00 4.20
2423 6753 5.444663 AAGTAACCGTATAATCCTCGTCC 57.555 43.478 0.00 0.00 0.00 4.79
2424 6754 4.723309 AGTAACCGTATAATCCTCGTCCT 58.277 43.478 0.00 0.00 0.00 3.85
2425 6755 5.136105 AGTAACCGTATAATCCTCGTCCTT 58.864 41.667 0.00 0.00 0.00 3.36
2426 6756 4.317671 AACCGTATAATCCTCGTCCTTG 57.682 45.455 0.00 0.00 0.00 3.61
2427 6757 3.559069 ACCGTATAATCCTCGTCCTTGA 58.441 45.455 0.00 0.00 0.00 3.02
2428 6758 3.317430 ACCGTATAATCCTCGTCCTTGAC 59.683 47.826 0.00 0.00 0.00 3.18
2451 6781 5.769484 GGTAACGTCTCCTCTTATCATCA 57.231 43.478 0.00 0.00 0.00 3.07
2452 6782 5.521544 GGTAACGTCTCCTCTTATCATCAC 58.478 45.833 0.00 0.00 0.00 3.06
2453 6783 3.972950 ACGTCTCCTCTTATCATCACG 57.027 47.619 0.00 0.00 0.00 4.35
2454 6784 3.280295 ACGTCTCCTCTTATCATCACGT 58.720 45.455 0.00 0.00 34.56 4.49
2455 6785 3.695060 ACGTCTCCTCTTATCATCACGTT 59.305 43.478 0.00 0.00 35.84 3.99
2456 6786 4.201930 ACGTCTCCTCTTATCATCACGTTC 60.202 45.833 0.00 0.00 35.84 3.95
2457 6787 4.612943 GTCTCCTCTTATCATCACGTTCC 58.387 47.826 0.00 0.00 0.00 3.62
2458 6788 3.315470 TCTCCTCTTATCATCACGTTCCG 59.685 47.826 0.00 0.00 0.00 4.30
2459 6789 3.021695 TCCTCTTATCATCACGTTCCGT 58.978 45.455 0.00 0.00 42.36 4.69
2468 6798 2.713154 ACGTTCCGTGTTTGCAGC 59.287 55.556 0.00 0.00 39.18 5.25
2469 6799 2.051345 CGTTCCGTGTTTGCAGCC 60.051 61.111 0.00 0.00 0.00 4.85
2470 6800 2.829206 CGTTCCGTGTTTGCAGCCA 61.829 57.895 0.00 0.00 0.00 4.75
2471 6801 1.659794 GTTCCGTGTTTGCAGCCAT 59.340 52.632 0.00 0.00 0.00 4.40
2472 6802 0.664166 GTTCCGTGTTTGCAGCCATG 60.664 55.000 0.00 0.00 0.00 3.66
2488 6818 3.204119 TGCCGCGCATCTTCATGG 61.204 61.111 8.75 0.00 31.71 3.66
2489 6819 4.619140 GCCGCGCATCTTCATGGC 62.619 66.667 8.75 5.42 35.04 4.40
2490 6820 3.957535 CCGCGCATCTTCATGGCC 61.958 66.667 8.75 0.00 0.00 5.36
2491 6821 3.204119 CGCGCATCTTCATGGCCA 61.204 61.111 8.56 8.56 0.00 5.36
2492 6822 2.549198 CGCGCATCTTCATGGCCAT 61.549 57.895 14.09 14.09 0.00 4.40
2493 6823 1.285023 GCGCATCTTCATGGCCATC 59.715 57.895 17.61 1.13 0.00 3.51
2494 6824 1.954528 CGCATCTTCATGGCCATCC 59.045 57.895 17.61 0.00 0.00 3.51
2496 6826 0.672342 GCATCTTCATGGCCATCCAC 59.328 55.000 17.61 0.00 46.92 4.02
2497 6827 0.949397 CATCTTCATGGCCATCCACG 59.051 55.000 17.61 4.60 46.92 4.94
2498 6828 0.548031 ATCTTCATGGCCATCCACGT 59.452 50.000 17.61 0.00 46.92 4.49
2499 6829 0.107703 TCTTCATGGCCATCCACGTC 60.108 55.000 17.61 0.00 46.92 4.34
2500 6830 0.107508 CTTCATGGCCATCCACGTCT 60.108 55.000 17.61 0.00 46.92 4.18
2501 6831 0.392863 TTCATGGCCATCCACGTCTG 60.393 55.000 17.61 3.38 46.92 3.51
2502 6832 1.820906 CATGGCCATCCACGTCTGG 60.821 63.158 17.61 0.00 46.92 3.86
2528 6858 4.557605 CCGGCGCATGCATGAACC 62.558 66.667 30.64 25.77 45.35 3.62
2529 6859 4.557605 CGGCGCATGCATGAACCC 62.558 66.667 30.64 22.24 45.35 4.11
2530 6860 3.142838 GGCGCATGCATGAACCCT 61.143 61.111 30.64 0.00 45.35 4.34
2531 6861 2.713967 GGCGCATGCATGAACCCTT 61.714 57.895 30.64 0.00 45.35 3.95
2532 6862 1.216178 GCGCATGCATGAACCCTTT 59.784 52.632 30.64 0.00 42.15 3.11
2533 6863 0.390209 GCGCATGCATGAACCCTTTT 60.390 50.000 30.64 0.00 42.15 2.27
2534 6864 1.940752 GCGCATGCATGAACCCTTTTT 60.941 47.619 30.64 0.00 42.15 1.94
2556 6886 8.604640 TTTTTCTTTTACCGGTTTTCTTGTTT 57.395 26.923 15.04 0.00 0.00 2.83
2557 6887 7.583860 TTTCTTTTACCGGTTTTCTTGTTTG 57.416 32.000 15.04 0.00 0.00 2.93
2558 6888 6.270156 TCTTTTACCGGTTTTCTTGTTTGT 57.730 33.333 15.04 0.00 0.00 2.83
2559 6889 6.689554 TCTTTTACCGGTTTTCTTGTTTGTT 58.310 32.000 15.04 0.00 0.00 2.83
2560 6890 7.153315 TCTTTTACCGGTTTTCTTGTTTGTTT 58.847 30.769 15.04 0.00 0.00 2.83
2561 6891 7.656542 TCTTTTACCGGTTTTCTTGTTTGTTTT 59.343 29.630 15.04 0.00 0.00 2.43
2562 6892 7.725818 TTTACCGGTTTTCTTGTTTGTTTTT 57.274 28.000 15.04 0.00 0.00 1.94
2631 6961 8.986477 TTTTCTTCTTCCTTTTCTGTTTCTTG 57.014 30.769 0.00 0.00 0.00 3.02
2632 6962 7.703058 TTCTTCTTCCTTTTCTGTTTCTTGT 57.297 32.000 0.00 0.00 0.00 3.16
2633 6963 7.703058 TCTTCTTCCTTTTCTGTTTCTTGTT 57.297 32.000 0.00 0.00 0.00 2.83
2634 6964 8.122472 TCTTCTTCCTTTTCTGTTTCTTGTTT 57.878 30.769 0.00 0.00 0.00 2.83
2635 6965 9.238368 TCTTCTTCCTTTTCTGTTTCTTGTTTA 57.762 29.630 0.00 0.00 0.00 2.01
2639 6969 9.801873 CTTCCTTTTCTGTTTCTTGTTTATTCA 57.198 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.975218 AAATTATGGACTGTATTAACACTCCTT 57.025 29.630 6.00 3.25 38.64 3.36
6 7 9.975218 AAAATTATGGACTGTATTAACACTCCT 57.025 29.630 6.00 0.00 38.64 3.69
9 10 9.975218 AGGAAAATTATGGACTGTATTAACACT 57.025 29.630 0.00 0.00 0.00 3.55
15 16 9.990868 AAGGTTAGGAAAATTATGGACTGTATT 57.009 29.630 0.00 0.00 0.00 1.89
16 17 9.990868 AAAGGTTAGGAAAATTATGGACTGTAT 57.009 29.630 0.00 0.00 0.00 2.29
17 18 9.816787 AAAAGGTTAGGAAAATTATGGACTGTA 57.183 29.630 0.00 0.00 0.00 2.74
18 19 8.721133 AAAAGGTTAGGAAAATTATGGACTGT 57.279 30.769 0.00 0.00 0.00 3.55
82 83 6.735875 ATCAACTGATGTAAAGGCCGGAGG 62.736 50.000 5.05 0.00 42.16 4.30
83 84 2.009774 CAACTGATGTAAAGGCCGGAG 58.990 52.381 5.05 0.00 0.00 4.63
84 85 1.626321 TCAACTGATGTAAAGGCCGGA 59.374 47.619 5.05 0.00 0.00 5.14
85 86 2.107950 TCAACTGATGTAAAGGCCGG 57.892 50.000 0.00 0.00 0.00 6.13
86 87 3.680642 CATCAACTGATGTAAAGGCCG 57.319 47.619 10.92 0.00 45.10 6.13
96 97 0.744874 GGCTGCATGCATCAACTGAT 59.255 50.000 22.97 0.00 45.15 2.90
97 98 0.609681 TGGCTGCATGCATCAACTGA 60.610 50.000 22.97 0.00 45.15 3.41
98 99 0.459899 ATGGCTGCATGCATCAACTG 59.540 50.000 22.97 9.56 45.15 3.16
99 100 2.061509 TATGGCTGCATGCATCAACT 57.938 45.000 22.97 11.00 45.15 3.16
100 101 3.380479 AATATGGCTGCATGCATCAAC 57.620 42.857 22.97 12.06 45.15 3.18
101 102 4.146564 AGTAATATGGCTGCATGCATCAA 58.853 39.130 22.97 11.65 45.15 2.57
102 103 3.754850 GAGTAATATGGCTGCATGCATCA 59.245 43.478 22.97 21.78 45.15 3.07
103 104 3.128242 GGAGTAATATGGCTGCATGCATC 59.872 47.826 22.97 17.75 45.15 3.91
104 105 3.087031 GGAGTAATATGGCTGCATGCAT 58.913 45.455 22.97 9.00 45.15 3.96
105 106 2.507484 GGAGTAATATGGCTGCATGCA 58.493 47.619 21.29 21.29 45.15 3.96
106 107 1.815003 GGGAGTAATATGGCTGCATGC 59.185 52.381 11.82 11.82 41.94 4.06
107 108 2.816087 GTGGGAGTAATATGGCTGCATG 59.184 50.000 0.50 0.00 0.00 4.06
108 109 2.224867 GGTGGGAGTAATATGGCTGCAT 60.225 50.000 0.50 0.00 0.00 3.96
109 110 1.142870 GGTGGGAGTAATATGGCTGCA 59.857 52.381 0.50 0.00 0.00 4.41
110 111 1.878102 CGGTGGGAGTAATATGGCTGC 60.878 57.143 0.00 0.00 0.00 5.25
111 112 1.416401 ACGGTGGGAGTAATATGGCTG 59.584 52.381 0.00 0.00 0.00 4.85
112 113 1.692519 GACGGTGGGAGTAATATGGCT 59.307 52.381 0.00 0.00 0.00 4.75
113 114 1.270678 GGACGGTGGGAGTAATATGGC 60.271 57.143 0.00 0.00 0.00 4.40
114 115 1.346722 GGGACGGTGGGAGTAATATGG 59.653 57.143 0.00 0.00 0.00 2.74
115 116 2.043992 TGGGACGGTGGGAGTAATATG 58.956 52.381 0.00 0.00 0.00 1.78
116 117 2.482414 TGGGACGGTGGGAGTAATAT 57.518 50.000 0.00 0.00 0.00 1.28
117 118 2.250921 TTGGGACGGTGGGAGTAATA 57.749 50.000 0.00 0.00 0.00 0.98
118 119 1.364269 TTTGGGACGGTGGGAGTAAT 58.636 50.000 0.00 0.00 0.00 1.89
119 120 1.138568 TTTTGGGACGGTGGGAGTAA 58.861 50.000 0.00 0.00 0.00 2.24
120 121 1.364269 ATTTTGGGACGGTGGGAGTA 58.636 50.000 0.00 0.00 0.00 2.59
121 122 0.481128 AATTTTGGGACGGTGGGAGT 59.519 50.000 0.00 0.00 0.00 3.85
122 123 1.173913 GAATTTTGGGACGGTGGGAG 58.826 55.000 0.00 0.00 0.00 4.30
123 124 0.774908 AGAATTTTGGGACGGTGGGA 59.225 50.000 0.00 0.00 0.00 4.37
124 125 1.272212 CAAGAATTTTGGGACGGTGGG 59.728 52.381 0.00 0.00 0.00 4.61
125 126 1.960689 ACAAGAATTTTGGGACGGTGG 59.039 47.619 0.00 0.00 0.00 4.61
126 127 2.884639 AGACAAGAATTTTGGGACGGTG 59.115 45.455 0.00 0.00 0.00 4.94
127 128 3.223674 AGACAAGAATTTTGGGACGGT 57.776 42.857 0.00 0.00 0.00 4.83
128 129 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
129 130 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
130 131 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
131 132 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
132 133 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
195 196 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
196 197 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
197 198 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
198 199 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
199 200 8.693120 ATGTCTTAGATTTGTCTAGATACGGA 57.307 34.615 0.00 0.00 0.00 4.69
200 201 8.024285 GGATGTCTTAGATTTGTCTAGATACGG 58.976 40.741 0.00 0.00 0.00 4.02
201 202 8.788806 AGGATGTCTTAGATTTGTCTAGATACG 58.211 37.037 0.00 0.00 0.00 3.06
203 204 9.303116 GGAGGATGTCTTAGATTTGTCTAGATA 57.697 37.037 0.00 0.00 0.00 1.98
204 205 7.040062 CGGAGGATGTCTTAGATTTGTCTAGAT 60.040 40.741 0.00 0.00 0.00 1.98
205 206 6.263392 CGGAGGATGTCTTAGATTTGTCTAGA 59.737 42.308 0.00 0.00 0.00 2.43
206 207 6.039941 ACGGAGGATGTCTTAGATTTGTCTAG 59.960 42.308 0.00 0.00 0.00 2.43
207 208 5.892119 ACGGAGGATGTCTTAGATTTGTCTA 59.108 40.000 0.00 0.00 0.00 2.59
208 209 4.712337 ACGGAGGATGTCTTAGATTTGTCT 59.288 41.667 0.00 0.00 0.00 3.41
209 210 5.012328 ACGGAGGATGTCTTAGATTTGTC 57.988 43.478 0.00 0.00 0.00 3.18
210 211 4.141914 GGACGGAGGATGTCTTAGATTTGT 60.142 45.833 0.00 0.00 36.58 2.83
211 212 4.372656 GGACGGAGGATGTCTTAGATTTG 58.627 47.826 0.00 0.00 36.58 2.32
212 213 3.388350 GGGACGGAGGATGTCTTAGATTT 59.612 47.826 0.00 0.00 36.58 2.17
213 214 2.966516 GGGACGGAGGATGTCTTAGATT 59.033 50.000 0.00 0.00 36.58 2.40
214 215 2.091278 TGGGACGGAGGATGTCTTAGAT 60.091 50.000 0.00 0.00 36.58 1.98
215 216 1.286849 TGGGACGGAGGATGTCTTAGA 59.713 52.381 0.00 0.00 36.58 2.10
216 217 1.776662 TGGGACGGAGGATGTCTTAG 58.223 55.000 0.00 0.00 36.58 2.18
217 218 2.241281 TTGGGACGGAGGATGTCTTA 57.759 50.000 0.00 0.00 36.58 2.10
218 219 1.358152 TTTGGGACGGAGGATGTCTT 58.642 50.000 0.00 0.00 36.58 3.01
219 220 1.358152 TTTTGGGACGGAGGATGTCT 58.642 50.000 0.00 0.00 36.58 3.41
220 221 2.420058 ATTTTGGGACGGAGGATGTC 57.580 50.000 0.00 0.00 35.60 3.06
221 222 2.308866 AGAATTTTGGGACGGAGGATGT 59.691 45.455 0.00 0.00 0.00 3.06
222 223 3.004752 AGAATTTTGGGACGGAGGATG 57.995 47.619 0.00 0.00 0.00 3.51
223 224 3.245264 ACAAGAATTTTGGGACGGAGGAT 60.245 43.478 0.00 0.00 0.00 3.24
224 225 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
225 226 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
226 227 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
227 228 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
228 229 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
229 230 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
230 231 9.232473 ACTAATCTAAGACAAGAATTTTGGGAC 57.768 33.333 5.68 0.00 0.00 4.46
231 232 9.449719 GACTAATCTAAGACAAGAATTTTGGGA 57.550 33.333 5.68 0.00 0.00 4.37
232 233 9.454859 AGACTAATCTAAGACAAGAATTTTGGG 57.545 33.333 5.68 0.00 31.46 4.12
275 276 9.620660 GGATGTATCAAGTCACGTTTTAAAATT 57.379 29.630 3.52 0.00 0.00 1.82
276 277 7.960738 CGGATGTATCAAGTCACGTTTTAAAAT 59.039 33.333 3.52 0.00 0.00 1.82
277 278 7.041916 ACGGATGTATCAAGTCACGTTTTAAAA 60.042 33.333 0.00 0.00 0.00 1.52
278 279 6.424509 ACGGATGTATCAAGTCACGTTTTAAA 59.575 34.615 0.00 0.00 0.00 1.52
279 280 5.927689 ACGGATGTATCAAGTCACGTTTTAA 59.072 36.000 0.00 0.00 0.00 1.52
280 281 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
281 282 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
282 283 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
283 284 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
284 285 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
285 286 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
286 287 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
287 288 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
288 289 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
289 290 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
308 309 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
309 310 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
310 311 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
311 312 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
312 313 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
313 314 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
314 315 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
315 316 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
316 317 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
317 318 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
318 319 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
319 320 3.072476 TCTCCGTCCCAAAATTCTTGTCT 59.928 43.478 0.00 0.00 0.00 3.41
320 321 3.408634 TCTCCGTCCCAAAATTCTTGTC 58.591 45.455 0.00 0.00 0.00 3.18
321 322 3.502123 TCTCCGTCCCAAAATTCTTGT 57.498 42.857 0.00 0.00 0.00 3.16
322 323 4.278419 ACTTTCTCCGTCCCAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
323 324 4.470602 ACTTTCTCCGTCCCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
324 325 4.100279 ACTTTCTCCGTCCCAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
325 326 6.510879 AATACTTTCTCCGTCCCAAAATTC 57.489 37.500 0.00 0.00 0.00 2.17
326 327 8.411991 TTTAATACTTTCTCCGTCCCAAAATT 57.588 30.769 0.00 0.00 0.00 1.82
327 328 8.411991 TTTTAATACTTTCTCCGTCCCAAAAT 57.588 30.769 0.00 0.00 0.00 1.82
328 329 7.820578 TTTTAATACTTTCTCCGTCCCAAAA 57.179 32.000 0.00 0.00 0.00 2.44
329 330 7.522562 GCTTTTTAATACTTTCTCCGTCCCAAA 60.523 37.037 0.00 0.00 0.00 3.28
330 331 6.072342 GCTTTTTAATACTTTCTCCGTCCCAA 60.072 38.462 0.00 0.00 0.00 4.12
331 332 5.413523 GCTTTTTAATACTTTCTCCGTCCCA 59.586 40.000 0.00 0.00 0.00 4.37
332 333 5.446875 CGCTTTTTAATACTTTCTCCGTCCC 60.447 44.000 0.00 0.00 0.00 4.46
333 334 5.557388 CGCTTTTTAATACTTTCTCCGTCC 58.443 41.667 0.00 0.00 0.00 4.79
334 335 5.020128 GCGCTTTTTAATACTTTCTCCGTC 58.980 41.667 0.00 0.00 0.00 4.79
335 336 4.453136 TGCGCTTTTTAATACTTTCTCCGT 59.547 37.500 9.73 0.00 0.00 4.69
336 337 4.965062 TGCGCTTTTTAATACTTTCTCCG 58.035 39.130 9.73 0.00 0.00 4.63
337 338 6.146898 TGTTGCGCTTTTTAATACTTTCTCC 58.853 36.000 9.73 0.00 0.00 3.71
338 339 7.617533 TTGTTGCGCTTTTTAATACTTTCTC 57.382 32.000 9.73 0.00 0.00 2.87
339 340 7.704899 ACTTTGTTGCGCTTTTTAATACTTTCT 59.295 29.630 9.73 0.00 0.00 2.52
340 341 7.837505 ACTTTGTTGCGCTTTTTAATACTTTC 58.162 30.769 9.73 0.00 0.00 2.62
341 342 7.704899 AGACTTTGTTGCGCTTTTTAATACTTT 59.295 29.630 9.73 0.00 0.00 2.66
342 343 7.200455 AGACTTTGTTGCGCTTTTTAATACTT 58.800 30.769 9.73 0.00 0.00 2.24
343 344 6.735130 AGACTTTGTTGCGCTTTTTAATACT 58.265 32.000 9.73 0.00 0.00 2.12
344 345 6.635239 TGAGACTTTGTTGCGCTTTTTAATAC 59.365 34.615 9.73 0.00 0.00 1.89
345 346 6.635239 GTGAGACTTTGTTGCGCTTTTTAATA 59.365 34.615 9.73 0.00 0.00 0.98
346 347 5.458779 GTGAGACTTTGTTGCGCTTTTTAAT 59.541 36.000 9.73 0.00 0.00 1.40
347 348 4.796312 GTGAGACTTTGTTGCGCTTTTTAA 59.204 37.500 9.73 0.00 0.00 1.52
348 349 4.142578 TGTGAGACTTTGTTGCGCTTTTTA 60.143 37.500 9.73 0.00 0.00 1.52
349 350 3.179048 GTGAGACTTTGTTGCGCTTTTT 58.821 40.909 9.73 0.00 0.00 1.94
350 351 2.163412 TGTGAGACTTTGTTGCGCTTTT 59.837 40.909 9.73 0.00 0.00 2.27
351 352 1.742831 TGTGAGACTTTGTTGCGCTTT 59.257 42.857 9.73 0.00 0.00 3.51
352 353 1.378531 TGTGAGACTTTGTTGCGCTT 58.621 45.000 9.73 0.00 0.00 4.68
353 354 1.378531 TTGTGAGACTTTGTTGCGCT 58.621 45.000 9.73 0.00 0.00 5.92
354 355 2.310577 GATTGTGAGACTTTGTTGCGC 58.689 47.619 0.00 0.00 0.00 6.09
355 356 2.290367 TGGATTGTGAGACTTTGTTGCG 59.710 45.455 0.00 0.00 0.00 4.85
356 357 3.988379 TGGATTGTGAGACTTTGTTGC 57.012 42.857 0.00 0.00 0.00 4.17
357 358 5.066375 TCACTTGGATTGTGAGACTTTGTTG 59.934 40.000 0.00 0.00 39.23 3.33
358 359 5.192927 TCACTTGGATTGTGAGACTTTGTT 58.807 37.500 0.00 0.00 39.23 2.83
359 360 4.780815 TCACTTGGATTGTGAGACTTTGT 58.219 39.130 0.00 0.00 39.23 2.83
360 361 5.756195 TTCACTTGGATTGTGAGACTTTG 57.244 39.130 0.00 0.00 43.98 2.77
361 362 6.136541 GTTTCACTTGGATTGTGAGACTTT 57.863 37.500 9.34 0.00 43.98 2.66
362 363 5.757850 GTTTCACTTGGATTGTGAGACTT 57.242 39.130 9.34 0.00 43.98 3.01
364 365 4.816385 TCAGTTTCACTTGGATTGTGAGAC 59.184 41.667 8.77 8.77 44.63 3.36
365 366 5.034852 TCAGTTTCACTTGGATTGTGAGA 57.965 39.130 0.00 0.00 43.98 3.27
366 367 5.756195 TTCAGTTTCACTTGGATTGTGAG 57.244 39.130 0.00 0.00 43.98 3.51
367 368 6.329496 GTTTTCAGTTTCACTTGGATTGTGA 58.671 36.000 0.00 0.00 41.94 3.58
368 369 5.229887 CGTTTTCAGTTTCACTTGGATTGTG 59.770 40.000 0.00 0.00 36.82 3.33
369 370 5.124776 TCGTTTTCAGTTTCACTTGGATTGT 59.875 36.000 0.00 0.00 0.00 2.71
370 371 5.577835 TCGTTTTCAGTTTCACTTGGATTG 58.422 37.500 0.00 0.00 0.00 2.67
371 372 5.828299 TCGTTTTCAGTTTCACTTGGATT 57.172 34.783 0.00 0.00 0.00 3.01
372 373 5.278463 CCATCGTTTTCAGTTTCACTTGGAT 60.278 40.000 0.00 0.00 0.00 3.41
373 374 4.036262 CCATCGTTTTCAGTTTCACTTGGA 59.964 41.667 0.00 0.00 0.00 3.53
374 375 4.202010 ACCATCGTTTTCAGTTTCACTTGG 60.202 41.667 0.00 0.00 0.00 3.61
382 383 8.330466 TGTAATATTGACCATCGTTTTCAGTT 57.670 30.769 0.00 0.00 0.00 3.16
386 387 7.548196 TCCTGTAATATTGACCATCGTTTTC 57.452 36.000 0.00 0.00 0.00 2.29
391 392 6.288294 TCCTTTCCTGTAATATTGACCATCG 58.712 40.000 0.00 0.00 0.00 3.84
429 430 1.514014 GTTGTTGCAATAGCGCGGG 60.514 57.895 8.83 0.00 46.23 6.13
439 440 8.726870 AAACTAGACTTACTTAAGTTGTTGCA 57.273 30.769 14.49 0.00 45.84 4.08
450 451 9.623350 GTTGAGACGATAAAACTAGACTTACTT 57.377 33.333 0.00 0.00 0.00 2.24
451 452 8.242739 GGTTGAGACGATAAAACTAGACTTACT 58.757 37.037 0.00 0.00 0.00 2.24
452 453 7.217825 CGGTTGAGACGATAAAACTAGACTTAC 59.782 40.741 0.00 0.00 0.00 2.34
535 537 5.278463 CCCAGAACTACACAGGTTTCATTTG 60.278 44.000 0.00 0.00 0.00 2.32
660 662 1.980765 TGTGCTCCCATGTTCTCTCTT 59.019 47.619 0.00 0.00 0.00 2.85
830 842 4.381505 GCTTTTTGTGTGGAAAGGACAAGA 60.382 41.667 0.00 0.00 34.30 3.02
841 853 2.712077 GCGATCGCTTTTTGTGTGG 58.288 52.632 31.94 0.00 38.26 4.17
904 916 2.031930 TCGGCGGTTACAAAAGAAACAC 59.968 45.455 7.21 0.00 0.00 3.32
951 963 1.547372 GGTATTTATAGGAGGCGGCGA 59.453 52.381 12.98 0.00 0.00 5.54
956 968 3.955650 TCAGCGGTATTTATAGGAGGC 57.044 47.619 0.00 0.00 0.00 4.70
958 970 5.394663 CCTGGATCAGCGGTATTTATAGGAG 60.395 48.000 0.00 0.00 0.00 3.69
981 993 5.972382 GTGTGTGTTCGTATCTATCTCTTCC 59.028 44.000 0.00 0.00 0.00 3.46
989 1001 3.690628 TCGATGGTGTGTGTTCGTATCTA 59.309 43.478 0.00 0.00 33.52 1.98
991 1003 2.871133 TCGATGGTGTGTGTTCGTATC 58.129 47.619 0.00 0.00 33.52 2.24
996 1014 0.999406 CCGATCGATGGTGTGTGTTC 59.001 55.000 18.66 0.00 0.00 3.18
1019 1037 4.326826 GTTTTCCTGTCTGTGATGGATGA 58.673 43.478 0.00 0.00 0.00 2.92
1035 1053 1.711206 CGACGGAAGAGAGGTTTTCC 58.289 55.000 0.00 0.00 39.56 3.13
1036 1054 1.069255 GCGACGGAAGAGAGGTTTTC 58.931 55.000 0.00 0.00 0.00 2.29
1040 1058 2.672307 ACGCGACGGAAGAGAGGT 60.672 61.111 15.93 0.00 0.00 3.85
1061 1079 0.449388 GAGGACGGTACACTACGTGG 59.551 60.000 0.00 0.00 44.24 4.94
1094 1112 3.204827 GATGCGAGCGGCCATGTT 61.205 61.111 2.24 0.00 42.61 2.71
1130 1148 1.590932 GCGCTGATGATCAAGACCAT 58.409 50.000 0.00 0.00 0.00 3.55
1135 1153 2.249535 CCCCGCGCTGATGATCAAG 61.250 63.158 5.56 0.00 0.00 3.02
1189 1207 1.517832 GGCAGCATAGAGGACGTGT 59.482 57.895 0.00 0.00 0.00 4.49
1190 1208 1.589993 CGGCAGCATAGAGGACGTG 60.590 63.158 0.00 0.00 0.00 4.49
1191 1209 2.808315 CGGCAGCATAGAGGACGT 59.192 61.111 0.00 0.00 0.00 4.34
1196 1214 2.659897 GACCGCGGCAGCATAGAG 60.660 66.667 28.58 0.00 45.49 2.43
1251 1278 1.693152 GGTATTCCACCTCCCCGGAC 61.693 65.000 0.73 0.00 44.79 4.79
1285 1312 3.288308 CTTGTGAGCGGCGTCTCCT 62.288 63.158 22.19 6.66 32.22 3.69
1452 1483 4.627284 TTACCTTTCCAAACTCATCCGA 57.373 40.909 0.00 0.00 0.00 4.55
1547 1581 2.750712 TGTAGAGTACGTAGCATGCACA 59.249 45.455 21.98 8.28 0.00 4.57
1554 1588 6.601741 ATGTAGACTTGTAGAGTACGTAGC 57.398 41.667 0.00 0.00 39.19 3.58
1567 1601 0.159554 CGCGCGCATATGTAGACTTG 59.840 55.000 32.61 5.56 0.00 3.16
1568 1602 0.030235 TCGCGCGCATATGTAGACTT 59.970 50.000 32.61 0.00 0.00 3.01
1569 1603 0.030235 TTCGCGCGCATATGTAGACT 59.970 50.000 32.61 0.00 0.00 3.24
1570 1604 0.850217 TTTCGCGCGCATATGTAGAC 59.150 50.000 32.61 0.00 0.00 2.59
1571 1605 1.562017 TTTTCGCGCGCATATGTAGA 58.438 45.000 32.61 15.43 0.00 2.59
1572 1606 2.225086 CATTTTCGCGCGCATATGTAG 58.775 47.619 32.61 13.04 0.00 2.74
1573 1607 1.595328 ACATTTTCGCGCGCATATGTA 59.405 42.857 29.29 8.80 0.00 2.29
1574 1608 0.376852 ACATTTTCGCGCGCATATGT 59.623 45.000 32.61 26.36 0.00 2.29
1582 1616 2.284288 CGTAGTACTCACATTTTCGCGC 60.284 50.000 0.00 0.00 0.00 6.86
1615 1649 6.349445 CGATTGGAGTAGTGAACTAGTGACTT 60.349 42.308 11.93 0.00 39.07 3.01
1616 1650 5.124138 CGATTGGAGTAGTGAACTAGTGACT 59.876 44.000 11.51 11.51 39.07 3.41
1617 1651 5.123502 TCGATTGGAGTAGTGAACTAGTGAC 59.876 44.000 0.00 0.00 39.07 3.67
1645 1684 8.487970 CGCTTGTTTATTACAACTCGATCATAT 58.512 33.333 0.00 0.00 41.73 1.78
1646 1685 7.516155 GCGCTTGTTTATTACAACTCGATCATA 60.516 37.037 0.00 0.00 41.73 2.15
1707 2066 1.554891 CGCGCATGATCCAGCTACAG 61.555 60.000 8.75 0.00 0.00 2.74
1724 2309 8.792831 AAATGTCATTTTCATTGATAGATCGC 57.207 30.769 4.91 0.00 35.95 4.58
1758 2768 0.251916 ATGTCCCCACACCACGTATG 59.748 55.000 0.00 0.00 34.48 2.39
1759 2769 0.988832 AATGTCCCCACACCACGTAT 59.011 50.000 0.00 0.00 34.48 3.06
1784 2807 1.870402 CAACAATGTGCACTCCGTACA 59.130 47.619 19.41 0.00 44.86 2.90
1851 3389 7.714377 AGCAATAATGGATGTCAAACACAAAAA 59.286 29.630 0.00 0.00 38.97 1.94
1910 3448 1.741770 AGCAACCTTCCGCGTGATC 60.742 57.895 4.92 0.00 0.00 2.92
1926 3464 4.691216 ACTGCACTAAAGTAAGTTAGCAGC 59.309 41.667 14.55 4.70 44.39 5.25
2035 6365 1.662446 CGTTTGTCCACTACGGCGT 60.662 57.895 19.64 19.64 33.14 5.68
2094 6424 1.003928 TCTCACCTGTAGTGCTCGGTA 59.996 52.381 0.00 0.00 46.81 4.02
2105 6435 3.500299 CGATCTCGATACATCTCACCTGT 59.500 47.826 0.00 0.00 43.02 4.00
2231 6561 1.702491 GAACGGCCGGTTACAGATGC 61.702 60.000 31.76 3.85 39.50 3.91
2239 6569 3.562232 TCCAAGGAACGGCCGGTT 61.562 61.111 31.76 20.81 43.43 4.44
2253 6583 2.172851 AAAAATACGTGCTCGGTCCA 57.827 45.000 13.32 0.00 41.85 4.02
2271 6601 3.242772 TGCGTCTGTAATGCGTTCAAAAA 60.243 39.130 0.00 0.00 43.27 1.94
2272 6602 2.288186 TGCGTCTGTAATGCGTTCAAAA 59.712 40.909 0.00 0.00 43.27 2.44
2273 6603 1.867865 TGCGTCTGTAATGCGTTCAAA 59.132 42.857 0.00 0.00 43.27 2.69
2274 6604 1.503294 TGCGTCTGTAATGCGTTCAA 58.497 45.000 0.00 0.00 43.27 2.69
2275 6605 1.459209 CTTGCGTCTGTAATGCGTTCA 59.541 47.619 0.00 0.00 43.27 3.18
2276 6606 1.786928 GCTTGCGTCTGTAATGCGTTC 60.787 52.381 0.00 0.00 43.27 3.95
2277 6607 0.165944 GCTTGCGTCTGTAATGCGTT 59.834 50.000 0.00 0.00 43.27 4.84
2278 6608 1.787847 GCTTGCGTCTGTAATGCGT 59.212 52.632 0.00 0.00 43.27 5.24
2279 6609 1.296145 CGCTTGCGTCTGTAATGCG 60.296 57.895 6.86 0.00 43.27 4.73
2280 6610 1.581147 GCGCTTGCGTCTGTAATGC 60.581 57.895 16.38 0.00 40.55 3.56
2281 6611 0.025513 GAGCGCTTGCGTCTGTAATG 59.974 55.000 13.26 0.00 45.69 1.90
2282 6612 0.389817 TGAGCGCTTGCGTCTGTAAT 60.390 50.000 13.26 0.00 45.69 1.89
2283 6613 0.389817 ATGAGCGCTTGCGTCTGTAA 60.390 50.000 13.26 3.57 45.69 2.41
2284 6614 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
2285 6615 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
2286 6616 1.770957 TATATGAGCGCTTGCGTCTG 58.229 50.000 13.26 0.00 45.69 3.51
2287 6617 2.732412 ATATATGAGCGCTTGCGTCT 57.268 45.000 13.26 13.17 45.69 4.18
2288 6618 2.276540 CGTATATATGAGCGCTTGCGTC 59.723 50.000 13.26 12.36 45.69 5.19
2289 6619 2.251040 CGTATATATGAGCGCTTGCGT 58.749 47.619 13.26 3.24 45.69 5.24
2290 6620 2.026860 CACGTATATATGAGCGCTTGCG 59.973 50.000 13.26 12.73 45.69 4.85
2291 6621 2.222596 GCACGTATATATGAGCGCTTGC 60.223 50.000 13.26 9.78 39.58 4.01
2292 6622 2.986479 TGCACGTATATATGAGCGCTTG 59.014 45.455 13.26 2.09 32.51 4.01
2293 6623 3.297830 TGCACGTATATATGAGCGCTT 57.702 42.857 13.26 0.00 32.51 4.68
2294 6624 3.510388 ATGCACGTATATATGAGCGCT 57.490 42.857 11.27 11.27 32.51 5.92
2295 6625 4.027621 GTGTATGCACGTATATATGAGCGC 60.028 45.833 16.43 0.00 35.75 5.92
2296 6626 5.606335 GTGTATGCACGTATATATGAGCG 57.394 43.478 16.43 4.78 35.75 5.03
2309 6639 4.682778 TTATAGGGGTGAGTGTATGCAC 57.317 45.455 5.71 5.71 45.57 4.57
2310 6640 4.471747 TGTTTATAGGGGTGAGTGTATGCA 59.528 41.667 0.00 0.00 0.00 3.96
2311 6641 4.814771 GTGTTTATAGGGGTGAGTGTATGC 59.185 45.833 0.00 0.00 0.00 3.14
2312 6642 5.815740 GTGTGTTTATAGGGGTGAGTGTATG 59.184 44.000 0.00 0.00 0.00 2.39
2313 6643 5.486063 TGTGTGTTTATAGGGGTGAGTGTAT 59.514 40.000 0.00 0.00 0.00 2.29
2314 6644 4.839550 TGTGTGTTTATAGGGGTGAGTGTA 59.160 41.667 0.00 0.00 0.00 2.90
2315 6645 3.649023 TGTGTGTTTATAGGGGTGAGTGT 59.351 43.478 0.00 0.00 0.00 3.55
2316 6646 4.000988 GTGTGTGTTTATAGGGGTGAGTG 58.999 47.826 0.00 0.00 0.00 3.51
2317 6647 3.649023 TGTGTGTGTTTATAGGGGTGAGT 59.351 43.478 0.00 0.00 0.00 3.41
2318 6648 4.000988 GTGTGTGTGTTTATAGGGGTGAG 58.999 47.826 0.00 0.00 0.00 3.51
2319 6649 3.649023 AGTGTGTGTGTTTATAGGGGTGA 59.351 43.478 0.00 0.00 0.00 4.02
2320 6650 4.000988 GAGTGTGTGTGTTTATAGGGGTG 58.999 47.826 0.00 0.00 0.00 4.61
2321 6651 3.908103 AGAGTGTGTGTGTTTATAGGGGT 59.092 43.478 0.00 0.00 0.00 4.95
2322 6652 4.223032 AGAGAGTGTGTGTGTTTATAGGGG 59.777 45.833 0.00 0.00 0.00 4.79
2323 6653 5.407407 AGAGAGTGTGTGTGTTTATAGGG 57.593 43.478 0.00 0.00 0.00 3.53
2324 6654 7.147897 TGGATAGAGAGTGTGTGTGTTTATAGG 60.148 40.741 0.00 0.00 0.00 2.57
2325 6655 7.772166 TGGATAGAGAGTGTGTGTGTTTATAG 58.228 38.462 0.00 0.00 0.00 1.31
2326 6656 7.712204 TGGATAGAGAGTGTGTGTGTTTATA 57.288 36.000 0.00 0.00 0.00 0.98
2327 6657 6.605471 TGGATAGAGAGTGTGTGTGTTTAT 57.395 37.500 0.00 0.00 0.00 1.40
2328 6658 6.605471 ATGGATAGAGAGTGTGTGTGTTTA 57.395 37.500 0.00 0.00 0.00 2.01
2329 6659 4.955811 TGGATAGAGAGTGTGTGTGTTT 57.044 40.909 0.00 0.00 0.00 2.83
2330 6660 6.381133 TCATATGGATAGAGAGTGTGTGTGTT 59.619 38.462 2.13 0.00 0.00 3.32
2331 6661 5.893824 TCATATGGATAGAGAGTGTGTGTGT 59.106 40.000 2.13 0.00 0.00 3.72
2332 6662 6.396829 TCATATGGATAGAGAGTGTGTGTG 57.603 41.667 2.13 0.00 0.00 3.82
2333 6663 5.010516 GCTCATATGGATAGAGAGTGTGTGT 59.989 44.000 2.13 0.00 0.00 3.72
2334 6664 5.010415 TGCTCATATGGATAGAGAGTGTGTG 59.990 44.000 2.13 0.00 0.00 3.82
2335 6665 5.010516 GTGCTCATATGGATAGAGAGTGTGT 59.989 44.000 2.13 0.00 0.00 3.72
2336 6666 5.243507 AGTGCTCATATGGATAGAGAGTGTG 59.756 44.000 2.13 0.00 0.00 3.82
2337 6667 5.392995 AGTGCTCATATGGATAGAGAGTGT 58.607 41.667 2.13 0.00 0.00 3.55
2338 6668 5.981088 AGTGCTCATATGGATAGAGAGTG 57.019 43.478 2.13 0.00 0.00 3.51
2339 6669 5.480073 GGAAGTGCTCATATGGATAGAGAGT 59.520 44.000 2.13 0.00 0.00 3.24
2340 6670 5.392919 CGGAAGTGCTCATATGGATAGAGAG 60.393 48.000 2.13 0.00 0.00 3.20
2341 6671 4.460731 CGGAAGTGCTCATATGGATAGAGA 59.539 45.833 2.13 0.00 0.00 3.10
2342 6672 4.460731 TCGGAAGTGCTCATATGGATAGAG 59.539 45.833 2.13 0.00 0.00 2.43
2343 6673 4.407365 TCGGAAGTGCTCATATGGATAGA 58.593 43.478 2.13 0.00 0.00 1.98
2344 6674 4.460731 TCTCGGAAGTGCTCATATGGATAG 59.539 45.833 2.13 0.00 0.00 2.08
2345 6675 4.407365 TCTCGGAAGTGCTCATATGGATA 58.593 43.478 2.13 0.00 0.00 2.59
2346 6676 3.234353 TCTCGGAAGTGCTCATATGGAT 58.766 45.455 2.13 0.00 0.00 3.41
2347 6677 2.625314 CTCTCGGAAGTGCTCATATGGA 59.375 50.000 2.13 0.00 0.00 3.41
2348 6678 2.625314 TCTCTCGGAAGTGCTCATATGG 59.375 50.000 2.13 0.00 0.00 2.74
2349 6679 3.317711 AGTCTCTCGGAAGTGCTCATATG 59.682 47.826 0.00 0.00 0.00 1.78
2350 6680 3.317711 CAGTCTCTCGGAAGTGCTCATAT 59.682 47.826 0.00 0.00 0.00 1.78
2351 6681 2.685388 CAGTCTCTCGGAAGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
2352 6682 1.476085 CAGTCTCTCGGAAGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
2353 6683 0.884514 CAGTCTCTCGGAAGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
2354 6684 1.132262 CTCAGTCTCTCGGAAGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
2355 6685 1.173043 CTCAGTCTCTCGGAAGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
2356 6686 0.457681 GCTCAGTCTCTCGGAAGTGC 60.458 60.000 0.00 0.00 0.00 4.40
2357 6687 0.172352 GGCTCAGTCTCTCGGAAGTG 59.828 60.000 0.00 0.00 0.00 3.16
2358 6688 0.968393 GGGCTCAGTCTCTCGGAAGT 60.968 60.000 0.00 0.00 0.00 3.01
2359 6689 1.813192 GGGCTCAGTCTCTCGGAAG 59.187 63.158 0.00 0.00 0.00 3.46
2360 6690 2.046864 CGGGCTCAGTCTCTCGGAA 61.047 63.158 0.00 0.00 0.00 4.30
2361 6691 2.438614 CGGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 0.00 4.55
2362 6692 4.200283 GCGGGCTCAGTCTCTCGG 62.200 72.222 0.00 0.00 0.00 4.63
2363 6693 1.448119 TATGCGGGCTCAGTCTCTCG 61.448 60.000 0.00 0.00 0.00 4.04
2364 6694 0.965439 ATATGCGGGCTCAGTCTCTC 59.035 55.000 0.00 0.00 0.00 3.20
2365 6695 0.965439 GATATGCGGGCTCAGTCTCT 59.035 55.000 0.00 0.00 0.00 3.10
2366 6696 0.676184 TGATATGCGGGCTCAGTCTC 59.324 55.000 0.00 0.00 0.00 3.36
2367 6697 1.346062 ATGATATGCGGGCTCAGTCT 58.654 50.000 0.00 0.00 0.00 3.24
2368 6698 2.175878 AATGATATGCGGGCTCAGTC 57.824 50.000 0.00 0.00 0.00 3.51
2369 6699 2.620115 CAAAATGATATGCGGGCTCAGT 59.380 45.455 0.00 0.00 0.00 3.41
2370 6700 2.880268 TCAAAATGATATGCGGGCTCAG 59.120 45.455 0.00 0.00 0.00 3.35
2371 6701 2.880268 CTCAAAATGATATGCGGGCTCA 59.120 45.455 0.00 0.00 0.00 4.26
2372 6702 3.141398 TCTCAAAATGATATGCGGGCTC 58.859 45.455 0.00 0.00 0.00 4.70
2373 6703 3.213206 TCTCAAAATGATATGCGGGCT 57.787 42.857 0.00 0.00 0.00 5.19
2374 6704 4.510038 AATCTCAAAATGATATGCGGGC 57.490 40.909 0.00 0.00 0.00 6.13
2375 6705 6.578545 CGTAAAATCTCAAAATGATATGCGGG 59.421 38.462 0.00 0.00 0.00 6.13
2376 6706 7.351981 TCGTAAAATCTCAAAATGATATGCGG 58.648 34.615 0.00 0.00 0.00 5.69
2377 6707 8.766493 TTCGTAAAATCTCAAAATGATATGCG 57.234 30.769 0.00 0.00 0.00 4.73
2378 6708 9.722056 ACTTCGTAAAATCTCAAAATGATATGC 57.278 29.630 0.00 0.00 0.00 3.14
2383 6713 8.225107 CGGTTACTTCGTAAAATCTCAAAATGA 58.775 33.333 0.00 0.00 29.42 2.57
2384 6714 8.013378 ACGGTTACTTCGTAAAATCTCAAAATG 58.987 33.333 0.00 0.00 39.22 2.32
2385 6715 8.091385 ACGGTTACTTCGTAAAATCTCAAAAT 57.909 30.769 0.00 0.00 39.22 1.82
2386 6716 7.481275 ACGGTTACTTCGTAAAATCTCAAAA 57.519 32.000 0.00 0.00 39.22 2.44
2387 6717 8.761575 ATACGGTTACTTCGTAAAATCTCAAA 57.238 30.769 0.00 0.00 44.57 2.69
2388 6718 9.853555 TTATACGGTTACTTCGTAAAATCTCAA 57.146 29.630 0.00 0.00 44.57 3.02
2391 6721 9.468532 GGATTATACGGTTACTTCGTAAAATCT 57.531 33.333 0.00 0.00 44.57 2.40
2392 6722 9.468532 AGGATTATACGGTTACTTCGTAAAATC 57.531 33.333 0.00 0.00 44.57 2.17
2393 6723 9.468532 GAGGATTATACGGTTACTTCGTAAAAT 57.531 33.333 0.00 0.00 44.57 1.82
2394 6724 7.643764 CGAGGATTATACGGTTACTTCGTAAAA 59.356 37.037 0.00 0.00 44.57 1.52
2395 6725 7.132213 CGAGGATTATACGGTTACTTCGTAAA 58.868 38.462 0.00 0.00 44.57 2.01
2396 6726 6.260050 ACGAGGATTATACGGTTACTTCGTAA 59.740 38.462 0.00 0.00 44.57 3.18
2397 6727 5.758296 ACGAGGATTATACGGTTACTTCGTA 59.242 40.000 0.00 0.00 45.30 3.43
2398 6728 4.576463 ACGAGGATTATACGGTTACTTCGT 59.424 41.667 0.00 0.00 43.64 3.85
2399 6729 5.100751 ACGAGGATTATACGGTTACTTCG 57.899 43.478 0.00 0.00 34.20 3.79
2400 6730 5.240403 AGGACGAGGATTATACGGTTACTTC 59.760 44.000 0.00 0.00 0.00 3.01
2401 6731 5.136105 AGGACGAGGATTATACGGTTACTT 58.864 41.667 0.00 0.00 0.00 2.24
2402 6732 4.723309 AGGACGAGGATTATACGGTTACT 58.277 43.478 0.00 0.00 0.00 2.24
2403 6733 5.009010 TCAAGGACGAGGATTATACGGTTAC 59.991 44.000 0.00 0.00 0.00 2.50
2404 6734 5.009010 GTCAAGGACGAGGATTATACGGTTA 59.991 44.000 0.00 0.00 0.00 2.85
2405 6735 3.956199 TCAAGGACGAGGATTATACGGTT 59.044 43.478 0.00 0.00 0.00 4.44
2406 6736 3.317430 GTCAAGGACGAGGATTATACGGT 59.683 47.826 0.00 0.00 0.00 4.83
2407 6737 3.898529 GTCAAGGACGAGGATTATACGG 58.101 50.000 0.00 0.00 0.00 4.02
2428 6758 4.275196 TGATGATAAGAGGAGACGTTACCG 59.725 45.833 0.00 0.00 40.83 4.02
2429 6759 5.521544 GTGATGATAAGAGGAGACGTTACC 58.478 45.833 0.00 0.00 0.00 2.85
2430 6760 5.206299 CGTGATGATAAGAGGAGACGTTAC 58.794 45.833 0.00 0.00 0.00 2.50
2431 6761 4.880120 ACGTGATGATAAGAGGAGACGTTA 59.120 41.667 0.00 0.00 35.41 3.18
2432 6762 3.695060 ACGTGATGATAAGAGGAGACGTT 59.305 43.478 0.00 0.00 35.41 3.99
2433 6763 3.280295 ACGTGATGATAAGAGGAGACGT 58.720 45.455 0.00 0.00 34.20 4.34
2434 6764 3.972950 ACGTGATGATAAGAGGAGACG 57.027 47.619 0.00 0.00 0.00 4.18
2435 6765 4.612943 GGAACGTGATGATAAGAGGAGAC 58.387 47.826 0.00 0.00 0.00 3.36
2436 6766 4.920640 GGAACGTGATGATAAGAGGAGA 57.079 45.455 0.00 0.00 0.00 3.71
2453 6783 0.664166 CATGGCTGCAAACACGGAAC 60.664 55.000 0.50 0.00 0.00 3.62
2454 6784 1.659233 CATGGCTGCAAACACGGAA 59.341 52.632 0.50 0.00 0.00 4.30
2455 6785 3.353600 CATGGCTGCAAACACGGA 58.646 55.556 0.50 0.00 0.00 4.69
2471 6801 3.204119 CCATGAAGATGCGCGGCA 61.204 61.111 8.83 7.01 44.86 5.69
2472 6802 4.619140 GCCATGAAGATGCGCGGC 62.619 66.667 8.83 2.32 0.00 6.53
2473 6803 3.957535 GGCCATGAAGATGCGCGG 61.958 66.667 8.83 0.00 30.57 6.46
2474 6804 2.453773 GATGGCCATGAAGATGCGCG 62.454 60.000 26.56 0.00 30.57 6.86
2475 6805 1.285023 GATGGCCATGAAGATGCGC 59.715 57.895 26.56 0.00 0.00 6.09
2476 6806 0.820482 TGGATGGCCATGAAGATGCG 60.820 55.000 26.56 0.00 39.92 4.73
2477 6807 3.120796 TGGATGGCCATGAAGATGC 57.879 52.632 26.56 6.35 39.92 3.91
2511 6841 4.557605 GGTTCATGCATGCGCCGG 62.558 66.667 22.25 0.00 37.32 6.13
2512 6842 4.557605 GGGTTCATGCATGCGCCG 62.558 66.667 22.25 3.69 37.32 6.46
2513 6843 2.229690 AAAGGGTTCATGCATGCGCC 62.230 55.000 22.25 22.68 37.32 6.53
2514 6844 0.390209 AAAAGGGTTCATGCATGCGC 60.390 50.000 22.25 16.24 39.24 6.09
2515 6845 2.083167 AAAAAGGGTTCATGCATGCG 57.917 45.000 22.25 0.00 0.00 4.73
2531 6861 8.496751 CAAACAAGAAAACCGGTAAAAGAAAAA 58.503 29.630 8.00 0.00 0.00 1.94
2532 6862 7.656542 ACAAACAAGAAAACCGGTAAAAGAAAA 59.343 29.630 8.00 0.00 0.00 2.29
2533 6863 7.153315 ACAAACAAGAAAACCGGTAAAAGAAA 58.847 30.769 8.00 0.00 0.00 2.52
2534 6864 6.689554 ACAAACAAGAAAACCGGTAAAAGAA 58.310 32.000 8.00 0.00 0.00 2.52
2535 6865 6.270156 ACAAACAAGAAAACCGGTAAAAGA 57.730 33.333 8.00 0.00 0.00 2.52
2536 6866 6.954616 AACAAACAAGAAAACCGGTAAAAG 57.045 33.333 8.00 0.00 0.00 2.27
2537 6867 7.725818 AAAACAAACAAGAAAACCGGTAAAA 57.274 28.000 8.00 0.00 0.00 1.52
2538 6868 7.725818 AAAAACAAACAAGAAAACCGGTAAA 57.274 28.000 8.00 0.00 0.00 2.01
2605 6935 9.591792 CAAGAAACAGAAAAGGAAGAAGAAAAT 57.408 29.630 0.00 0.00 0.00 1.82
2606 6936 8.585018 ACAAGAAACAGAAAAGGAAGAAGAAAA 58.415 29.630 0.00 0.00 0.00 2.29
2607 6937 8.122472 ACAAGAAACAGAAAAGGAAGAAGAAA 57.878 30.769 0.00 0.00 0.00 2.52
2608 6938 7.703058 ACAAGAAACAGAAAAGGAAGAAGAA 57.297 32.000 0.00 0.00 0.00 2.52
2609 6939 7.703058 AACAAGAAACAGAAAAGGAAGAAGA 57.297 32.000 0.00 0.00 0.00 2.87
2613 6943 9.801873 TGAATAAACAAGAAACAGAAAAGGAAG 57.198 29.630 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.