Multiple sequence alignment - TraesCS3D01G292500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G292500 chr3D 100.000 7367 0 0 1 7367 402692747 402685381 0.000000e+00 13605.0
1 TraesCS3D01G292500 chr3A 98.154 6229 85 9 558 6759 523552948 523546723 0.000000e+00 10839.0
2 TraesCS3D01G292500 chr3A 95.584 317 13 1 6760 7076 312002178 312002493 2.370000e-139 507.0
3 TraesCS3D01G292500 chr3A 93.312 314 14 3 209 518 523553258 523552948 2.420000e-124 457.0
4 TraesCS3D01G292500 chr3A 92.414 290 18 2 7081 7367 523546739 523546451 1.910000e-110 411.0
5 TraesCS3D01G292500 chr3A 84.848 132 15 5 4 134 523553991 523553864 2.160000e-25 128.0
6 TraesCS3D01G292500 chr3B 97.136 6249 127 21 552 6759 528145769 528139532 0.000000e+00 10501.0
7 TraesCS3D01G292500 chr3B 89.796 539 26 15 4 524 528146281 528145754 0.000000e+00 664.0
8 TraesCS3D01G292500 chr3B 92.440 291 16 4 7081 7367 528139548 528139260 1.910000e-110 411.0
9 TraesCS3D01G292500 chr2D 96.573 321 10 1 6759 7078 314367408 314367088 1.410000e-146 531.0
10 TraesCS3D01G292500 chr6D 95.719 327 13 1 6753 7078 303614022 303614348 6.550000e-145 525.0
11 TraesCS3D01G292500 chr6D 94.785 326 15 2 6754 7078 131933390 131933714 2.370000e-139 507.0
12 TraesCS3D01G292500 chr6B 95.963 322 10 2 6758 7078 422568498 422568817 3.050000e-143 520.0
13 TraesCS3D01G292500 chr2A 95.441 329 9 4 6759 7082 4831038 4831365 3.050000e-143 520.0
14 TraesCS3D01G292500 chr2A 94.225 329 15 4 6754 7080 769224484 769224810 3.970000e-137 499.0
15 TraesCS3D01G292500 chr2A 80.374 107 21 0 1514 1620 725420258 725420152 1.700000e-11 82.4
16 TraesCS3D01G292500 chr4D 95.925 319 12 1 6761 7078 112969486 112969804 3.940000e-142 516.0
17 TraesCS3D01G292500 chr5B 94.277 332 16 3 6748 7078 34043198 34043527 8.530000e-139 505.0
18 TraesCS3D01G292500 chr2B 80.672 119 23 0 1502 1620 716053033 716052915 7.870000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G292500 chr3D 402685381 402692747 7366 True 13605.000000 13605 100.000 1 7367 1 chr3D.!!$R1 7366
1 TraesCS3D01G292500 chr3A 523546451 523553991 7540 True 2958.750000 10839 92.182 4 7367 4 chr3A.!!$R1 7363
2 TraesCS3D01G292500 chr3B 528139260 528146281 7021 True 3858.666667 10501 93.124 4 7367 3 chr3B.!!$R1 7363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 943 0.106708 TCAAAAGCTGTCACGCCTCT 59.893 50.000 0.00 0.0 0.00 3.69 F
945 1529 1.729881 GCCGGAAATGATGTGGCTC 59.270 57.895 5.05 0.0 42.44 4.70 F
2604 3200 1.227764 CAGCCTCCATGACATCCGG 60.228 63.158 0.00 0.0 0.00 5.14 F
4233 4829 0.540923 AGGAAGATGGTGCTGCTCTC 59.459 55.000 0.00 0.0 0.00 3.20 F
4463 5062 2.356278 GATCAGGTTGCCAGGCCA 59.644 61.111 9.64 0.0 0.00 5.36 F
4773 5372 3.118075 TGAAGGTTCGGATGCATTATGGA 60.118 43.478 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2780 0.318107 CAGCAACAAACGCCTTGAGG 60.318 55.000 4.94 0.0 38.50 3.86 R
2889 3485 0.036732 TCAGCTTGAGCCGGTGAATT 59.963 50.000 1.90 0.0 43.38 2.17 R
4488 5087 0.958091 TGGCATGGTTCTGGTTTTCG 59.042 50.000 0.00 0.0 0.00 3.46 R
5607 6206 0.620030 CCATGATCCAGGACACCACA 59.380 55.000 0.00 0.0 0.00 4.17 R
6022 6621 1.968540 GCACCAGCACTCCCAGAAC 60.969 63.158 0.00 0.0 41.58 3.01 R
6487 7097 3.776969 TGATTCACCATGAGACTAAGCCT 59.223 43.478 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.190953 GGCGATAGATACTCTACACCACC 59.809 52.174 0.00 0.00 30.79 4.61
59 60 5.298527 CGATAGATACTCTACACCACCAACA 59.701 44.000 0.00 0.00 30.79 3.33
76 77 4.340950 ACCAACATTCGGATTTTGTTCTGT 59.659 37.500 2.03 0.00 31.48 3.41
134 136 3.305897 TGCGATATTGCTTCACGTTACTG 59.694 43.478 15.98 0.00 35.36 2.74
200 428 1.588824 TACATGTGCTTGCTGCTGCC 61.589 55.000 13.47 0.00 43.37 4.85
230 771 1.282875 GCGGTCTGGTTGTTTCAGC 59.717 57.895 0.00 0.00 32.63 4.26
234 775 0.818040 GTCTGGTTGTTTCAGCGGGT 60.818 55.000 0.00 0.00 32.63 5.28
237 778 2.159382 CTGGTTGTTTCAGCGGGTAAT 58.841 47.619 0.00 0.00 0.00 1.89
390 931 4.320608 TTCTCACCCACAATTCAAAAGC 57.679 40.909 0.00 0.00 0.00 3.51
402 943 0.106708 TCAAAAGCTGTCACGCCTCT 59.893 50.000 0.00 0.00 0.00 3.69
488 1032 7.870509 ATTAATGCACGCCTATATTGATCAT 57.129 32.000 0.00 0.00 0.00 2.45
491 1035 3.996363 TGCACGCCTATATTGATCATCAC 59.004 43.478 0.00 0.00 0.00 3.06
492 1036 3.372206 GCACGCCTATATTGATCATCACC 59.628 47.826 0.00 0.00 0.00 4.02
498 1046 6.385033 GCCTATATTGATCATCACCAAAAGC 58.615 40.000 0.00 0.00 0.00 3.51
518 1066 3.819337 AGCTATCTACGCGAATCCACTAA 59.181 43.478 15.93 0.00 0.00 2.24
519 1067 4.277672 AGCTATCTACGCGAATCCACTAAA 59.722 41.667 15.93 0.00 0.00 1.85
520 1068 4.980434 GCTATCTACGCGAATCCACTAAAA 59.020 41.667 15.93 0.00 0.00 1.52
521 1069 5.634020 GCTATCTACGCGAATCCACTAAAAT 59.366 40.000 15.93 0.00 0.00 1.82
522 1070 6.145696 GCTATCTACGCGAATCCACTAAAATT 59.854 38.462 15.93 0.00 0.00 1.82
523 1071 7.327761 GCTATCTACGCGAATCCACTAAAATTA 59.672 37.037 15.93 0.00 0.00 1.40
524 1072 7.639162 ATCTACGCGAATCCACTAAAATTAG 57.361 36.000 15.93 0.00 36.82 1.73
525 1073 6.567050 TCTACGCGAATCCACTAAAATTAGT 58.433 36.000 15.93 0.00 44.42 2.24
526 1074 7.706159 TCTACGCGAATCCACTAAAATTAGTA 58.294 34.615 15.93 0.00 41.82 1.82
527 1075 6.579491 ACGCGAATCCACTAAAATTAGTAC 57.421 37.500 15.93 0.00 41.82 2.73
528 1076 6.101332 ACGCGAATCCACTAAAATTAGTACA 58.899 36.000 15.93 0.00 41.82 2.90
529 1077 6.759827 ACGCGAATCCACTAAAATTAGTACAT 59.240 34.615 15.93 0.00 41.82 2.29
530 1078 7.042925 ACGCGAATCCACTAAAATTAGTACATC 60.043 37.037 15.93 2.76 41.82 3.06
531 1079 7.281484 GCGAATCCACTAAAATTAGTACATCG 58.719 38.462 16.84 16.84 41.82 3.84
532 1080 7.281484 CGAATCCACTAAAATTAGTACATCGC 58.719 38.462 5.56 0.00 41.82 4.58
533 1081 7.042992 CGAATCCACTAAAATTAGTACATCGCA 60.043 37.037 5.56 0.00 41.82 5.10
534 1082 8.500753 AATCCACTAAAATTAGTACATCGCAA 57.499 30.769 5.56 0.00 41.82 4.85
535 1083 7.908827 TCCACTAAAATTAGTACATCGCAAA 57.091 32.000 5.56 0.00 41.82 3.68
536 1084 8.325421 TCCACTAAAATTAGTACATCGCAAAA 57.675 30.769 5.56 0.00 41.82 2.44
537 1085 8.784994 TCCACTAAAATTAGTACATCGCAAAAA 58.215 29.630 5.56 0.00 41.82 1.94
538 1086 9.061610 CCACTAAAATTAGTACATCGCAAAAAG 57.938 33.333 5.56 0.00 41.82 2.27
539 1087 9.820229 CACTAAAATTAGTACATCGCAAAAAGA 57.180 29.630 5.56 0.00 41.82 2.52
543 1091 9.959749 AAAATTAGTACATCGCAAAAAGAAAGA 57.040 25.926 0.00 0.00 0.00 2.52
544 1092 9.959749 AAATTAGTACATCGCAAAAAGAAAGAA 57.040 25.926 0.00 0.00 0.00 2.52
545 1093 9.959749 AATTAGTACATCGCAAAAAGAAAGAAA 57.040 25.926 0.00 0.00 0.00 2.52
546 1094 9.612620 ATTAGTACATCGCAAAAAGAAAGAAAG 57.387 29.630 0.00 0.00 0.00 2.62
547 1095 7.259290 AGTACATCGCAAAAAGAAAGAAAGA 57.741 32.000 0.00 0.00 0.00 2.52
548 1096 7.703328 AGTACATCGCAAAAAGAAAGAAAGAA 58.297 30.769 0.00 0.00 0.00 2.52
549 1097 8.188139 AGTACATCGCAAAAAGAAAGAAAGAAA 58.812 29.630 0.00 0.00 0.00 2.52
550 1098 7.826260 ACATCGCAAAAAGAAAGAAAGAAAA 57.174 28.000 0.00 0.00 0.00 2.29
557 1105 8.882736 GCAAAAAGAAAGAAAGAAAAGAATCCA 58.117 29.630 0.00 0.00 0.00 3.41
675 1223 5.695851 ATTTAGAACTGCTGTTGAGTTGG 57.304 39.130 14.22 0.00 36.39 3.77
677 1225 2.565841 AGAACTGCTGTTGAGTTGGAC 58.434 47.619 14.22 0.00 36.39 4.02
678 1226 2.171448 AGAACTGCTGTTGAGTTGGACT 59.829 45.455 14.22 0.00 36.39 3.85
679 1227 2.246719 ACTGCTGTTGAGTTGGACTC 57.753 50.000 1.21 1.21 45.26 3.36
691 1241 2.497675 AGTTGGACTCGTAGCACATCAT 59.502 45.455 0.00 0.00 0.00 2.45
872 1436 2.474526 CCAGACAAACGTCGCATGATTC 60.475 50.000 0.00 0.00 38.51 2.52
923 1507 2.760650 TCATGTGTGTAGAGTGCCCTAG 59.239 50.000 0.00 0.00 0.00 3.02
945 1529 1.729881 GCCGGAAATGATGTGGCTC 59.270 57.895 5.05 0.00 42.44 4.70
964 1548 5.105752 GGCTCTTGTTGATGACTAGTACTG 58.894 45.833 5.39 0.00 33.55 2.74
1727 2323 5.292589 ACCGTGTTGTCATTCCGATTTATAC 59.707 40.000 0.00 0.00 0.00 1.47
1746 2342 2.032681 GTGCTCAAGGCCGAGGTT 59.967 61.111 9.41 0.00 40.92 3.50
1830 2426 3.708220 CTTCTGGAGCCGGCGAGTC 62.708 68.421 23.20 13.72 0.00 3.36
2184 2780 1.339610 CTCATCTCTGTCCGGATGGTC 59.660 57.143 7.81 0.00 39.57 4.02
2472 3068 2.037367 CGTGGTCTGAGGGAGGGA 59.963 66.667 0.00 0.00 0.00 4.20
2574 3170 3.326578 CCGATGGTGTCCCCCACA 61.327 66.667 0.00 0.00 46.44 4.17
2604 3200 1.227764 CAGCCTCCATGACATCCGG 60.228 63.158 0.00 0.00 0.00 5.14
2736 3332 2.766263 CTCATCACTTACAGGGGCACTA 59.234 50.000 0.00 0.00 0.00 2.74
2889 3485 3.449377 TCCGGAGTAAACTGTATGATGCA 59.551 43.478 0.00 0.00 0.00 3.96
3624 4220 2.731571 GGTGAGGCGCCTCCATACA 61.732 63.158 44.85 29.16 42.09 2.29
4065 4661 5.946942 TTCTTGATACTGCCTCTGAGATT 57.053 39.130 6.17 0.00 0.00 2.40
4233 4829 0.540923 AGGAAGATGGTGCTGCTCTC 59.459 55.000 0.00 0.00 0.00 3.20
4463 5062 2.356278 GATCAGGTTGCCAGGCCA 59.644 61.111 9.64 0.00 0.00 5.36
4488 5087 4.466827 TGAAACTTGGAGAAGGTAAACCC 58.533 43.478 0.00 0.00 36.42 4.11
4554 5153 4.569966 GTGCAAACAATTGACATGAACCAA 59.430 37.500 13.59 0.86 38.94 3.67
4773 5372 3.118075 TGAAGGTTCGGATGCATTATGGA 60.118 43.478 0.00 0.00 0.00 3.41
4968 5567 7.148507 GGGCTTAATCAGATATCGATGTTTGAG 60.149 40.741 18.00 7.97 0.00 3.02
5607 6206 7.013083 GTCATGATGATATCAAGCTGGTTTCTT 59.987 37.037 9.99 0.00 43.50 2.52
6022 6621 3.119291 GTTGTCCAGACTGCTATCATCG 58.881 50.000 0.00 0.00 0.00 3.84
6487 7097 5.964958 CTTCTGGAAGCAGTGGAATTTAA 57.035 39.130 0.00 0.00 0.00 1.52
6564 7175 4.584327 AACTTGCCGCTTTCTAATTGTT 57.416 36.364 0.00 0.00 0.00 2.83
6673 7284 2.539274 GCTGAAAACGAAAAATGCTGCA 59.461 40.909 4.13 4.13 0.00 4.41
6792 7403 9.921637 TGAAAAACATATGGACTTTATTCAACC 57.078 29.630 7.80 0.00 0.00 3.77
6793 7404 8.980143 AAAAACATATGGACTTTATTCAACCG 57.020 30.769 7.80 0.00 0.00 4.44
6794 7405 7.931578 AAACATATGGACTTTATTCAACCGA 57.068 32.000 7.80 0.00 0.00 4.69
6795 7406 7.931578 AACATATGGACTTTATTCAACCGAA 57.068 32.000 7.80 0.00 35.05 4.30
6796 7407 7.931578 ACATATGGACTTTATTCAACCGAAA 57.068 32.000 7.80 0.00 34.01 3.46
6797 7408 8.519799 ACATATGGACTTTATTCAACCGAAAT 57.480 30.769 7.80 0.00 34.01 2.17
6798 7409 9.621629 ACATATGGACTTTATTCAACCGAAATA 57.378 29.630 7.80 0.00 34.01 1.40
6801 7412 7.747155 TGGACTTTATTCAACCGAAATAACA 57.253 32.000 0.00 0.00 34.01 2.41
6802 7413 7.812648 TGGACTTTATTCAACCGAAATAACAG 58.187 34.615 0.00 0.00 34.01 3.16
6803 7414 7.662258 TGGACTTTATTCAACCGAAATAACAGA 59.338 33.333 0.00 0.00 34.01 3.41
6804 7415 8.674607 GGACTTTATTCAACCGAAATAACAGAT 58.325 33.333 0.00 0.00 34.01 2.90
6811 7422 7.915293 TCAACCGAAATAACAGATACATTGT 57.085 32.000 0.00 0.00 0.00 2.71
6812 7423 8.330466 TCAACCGAAATAACAGATACATTGTT 57.670 30.769 0.00 0.00 41.36 2.83
6813 7424 8.788806 TCAACCGAAATAACAGATACATTGTTT 58.211 29.630 0.00 0.00 39.36 2.83
6814 7425 8.849490 CAACCGAAATAACAGATACATTGTTTG 58.151 33.333 0.00 0.00 39.36 2.93
6815 7426 8.106247 ACCGAAATAACAGATACATTGTTTGT 57.894 30.769 0.00 0.00 39.36 2.83
6816 7427 8.020819 ACCGAAATAACAGATACATTGTTTGTG 58.979 33.333 0.00 0.00 39.48 3.33
6817 7428 8.233868 CCGAAATAACAGATACATTGTTTGTGA 58.766 33.333 10.57 1.15 39.48 3.58
6818 7429 9.265938 CGAAATAACAGATACATTGTTTGTGAG 57.734 33.333 10.57 0.00 39.48 3.51
6819 7430 9.559958 GAAATAACAGATACATTGTTTGTGAGG 57.440 33.333 10.57 0.00 39.48 3.86
6820 7431 8.862325 AATAACAGATACATTGTTTGTGAGGA 57.138 30.769 10.57 0.00 39.48 3.71
6821 7432 8.862325 ATAACAGATACATTGTTTGTGAGGAA 57.138 30.769 10.57 0.00 39.48 3.36
6822 7433 7.581213 AACAGATACATTGTTTGTGAGGAAA 57.419 32.000 10.57 0.00 39.48 3.13
6823 7434 7.206981 ACAGATACATTGTTTGTGAGGAAAG 57.793 36.000 10.57 0.00 39.48 2.62
6824 7435 6.207417 ACAGATACATTGTTTGTGAGGAAAGG 59.793 38.462 10.57 0.00 39.48 3.11
6825 7436 6.207417 CAGATACATTGTTTGTGAGGAAAGGT 59.793 38.462 0.00 0.00 39.48 3.50
6826 7437 7.390440 CAGATACATTGTTTGTGAGGAAAGGTA 59.610 37.037 0.00 0.00 39.48 3.08
6827 7438 5.767816 ACATTGTTTGTGAGGAAAGGTAC 57.232 39.130 0.00 0.00 37.11 3.34
6828 7439 5.197451 ACATTGTTTGTGAGGAAAGGTACA 58.803 37.500 0.00 0.00 37.11 2.90
6829 7440 5.654650 ACATTGTTTGTGAGGAAAGGTACAA 59.345 36.000 0.00 0.00 37.11 2.41
6830 7441 6.323739 ACATTGTTTGTGAGGAAAGGTACAAT 59.676 34.615 0.00 0.00 37.11 2.71
6831 7442 6.385649 TTGTTTGTGAGGAAAGGTACAATC 57.614 37.500 0.00 0.00 33.56 2.67
6832 7443 5.690865 TGTTTGTGAGGAAAGGTACAATCT 58.309 37.500 0.00 0.00 33.56 2.40
6833 7444 5.763204 TGTTTGTGAGGAAAGGTACAATCTC 59.237 40.000 0.00 0.00 33.56 2.75
6834 7445 5.560722 TTGTGAGGAAAGGTACAATCTCA 57.439 39.130 0.00 0.00 0.00 3.27
6835 7446 5.560722 TGTGAGGAAAGGTACAATCTCAA 57.439 39.130 0.00 0.00 0.00 3.02
6836 7447 6.126863 TGTGAGGAAAGGTACAATCTCAAT 57.873 37.500 0.00 0.00 0.00 2.57
6837 7448 6.173339 TGTGAGGAAAGGTACAATCTCAATC 58.827 40.000 0.00 0.00 0.00 2.67
6838 7449 6.173339 GTGAGGAAAGGTACAATCTCAATCA 58.827 40.000 0.00 0.00 0.00 2.57
6839 7450 6.825721 GTGAGGAAAGGTACAATCTCAATCAT 59.174 38.462 0.00 0.00 0.00 2.45
6840 7451 7.987458 GTGAGGAAAGGTACAATCTCAATCATA 59.013 37.037 0.00 0.00 0.00 2.15
6841 7452 8.206867 TGAGGAAAGGTACAATCTCAATCATAG 58.793 37.037 0.00 0.00 0.00 2.23
6842 7453 7.512992 AGGAAAGGTACAATCTCAATCATAGG 58.487 38.462 0.00 0.00 0.00 2.57
6843 7454 6.205658 GGAAAGGTACAATCTCAATCATAGGC 59.794 42.308 0.00 0.00 0.00 3.93
6844 7455 6.506538 AAGGTACAATCTCAATCATAGGCT 57.493 37.500 0.00 0.00 0.00 4.58
6845 7456 6.107901 AGGTACAATCTCAATCATAGGCTC 57.892 41.667 0.00 0.00 0.00 4.70
6846 7457 5.012561 AGGTACAATCTCAATCATAGGCTCC 59.987 44.000 0.00 0.00 0.00 4.70
6847 7458 5.012561 GGTACAATCTCAATCATAGGCTCCT 59.987 44.000 0.00 0.00 0.00 3.69
6848 7459 5.226194 ACAATCTCAATCATAGGCTCCTC 57.774 43.478 0.00 0.00 0.00 3.71
6849 7460 4.657504 ACAATCTCAATCATAGGCTCCTCA 59.342 41.667 0.00 0.00 0.00 3.86
6850 7461 5.131642 ACAATCTCAATCATAGGCTCCTCAA 59.868 40.000 0.00 0.00 0.00 3.02
6851 7462 5.901413 ATCTCAATCATAGGCTCCTCAAA 57.099 39.130 0.00 0.00 0.00 2.69
6852 7463 5.028549 TCTCAATCATAGGCTCCTCAAAC 57.971 43.478 0.00 0.00 0.00 2.93
6853 7464 4.133078 CTCAATCATAGGCTCCTCAAACC 58.867 47.826 0.00 0.00 0.00 3.27
6854 7465 3.523157 TCAATCATAGGCTCCTCAAACCA 59.477 43.478 0.00 0.00 0.00 3.67
6855 7466 4.018506 TCAATCATAGGCTCCTCAAACCAA 60.019 41.667 0.00 0.00 0.00 3.67
6856 7467 4.803329 ATCATAGGCTCCTCAAACCAAT 57.197 40.909 0.00 0.00 0.00 3.16
6857 7468 4.156455 TCATAGGCTCCTCAAACCAATC 57.844 45.455 0.00 0.00 0.00 2.67
6858 7469 3.523157 TCATAGGCTCCTCAAACCAATCA 59.477 43.478 0.00 0.00 0.00 2.57
6859 7470 2.978156 AGGCTCCTCAAACCAATCAA 57.022 45.000 0.00 0.00 0.00 2.57
6860 7471 2.519013 AGGCTCCTCAAACCAATCAAC 58.481 47.619 0.00 0.00 0.00 3.18
6861 7472 2.158475 AGGCTCCTCAAACCAATCAACA 60.158 45.455 0.00 0.00 0.00 3.33
6862 7473 2.229784 GGCTCCTCAAACCAATCAACAG 59.770 50.000 0.00 0.00 0.00 3.16
6863 7474 2.887152 GCTCCTCAAACCAATCAACAGT 59.113 45.455 0.00 0.00 0.00 3.55
6864 7475 4.072131 GCTCCTCAAACCAATCAACAGTA 58.928 43.478 0.00 0.00 0.00 2.74
6865 7476 4.154918 GCTCCTCAAACCAATCAACAGTAG 59.845 45.833 0.00 0.00 0.00 2.57
6866 7477 5.551233 CTCCTCAAACCAATCAACAGTAGA 58.449 41.667 0.00 0.00 0.00 2.59
6867 7478 5.935945 TCCTCAAACCAATCAACAGTAGAA 58.064 37.500 0.00 0.00 0.00 2.10
6868 7479 5.997746 TCCTCAAACCAATCAACAGTAGAAG 59.002 40.000 0.00 0.00 0.00 2.85
6869 7480 5.997746 CCTCAAACCAATCAACAGTAGAAGA 59.002 40.000 0.00 0.00 0.00 2.87
6870 7481 6.486657 CCTCAAACCAATCAACAGTAGAAGAA 59.513 38.462 0.00 0.00 0.00 2.52
6871 7482 7.013274 CCTCAAACCAATCAACAGTAGAAGAAA 59.987 37.037 0.00 0.00 0.00 2.52
6872 7483 8.287439 TCAAACCAATCAACAGTAGAAGAAAA 57.713 30.769 0.00 0.00 0.00 2.29
6873 7484 8.912988 TCAAACCAATCAACAGTAGAAGAAAAT 58.087 29.630 0.00 0.00 0.00 1.82
6874 7485 9.185192 CAAACCAATCAACAGTAGAAGAAAATC 57.815 33.333 0.00 0.00 0.00 2.17
6875 7486 8.697507 AACCAATCAACAGTAGAAGAAAATCT 57.302 30.769 0.00 0.00 0.00 2.40
6876 7487 9.793259 AACCAATCAACAGTAGAAGAAAATCTA 57.207 29.630 0.00 0.00 0.00 1.98
6877 7488 9.442047 ACCAATCAACAGTAGAAGAAAATCTAG 57.558 33.333 0.00 0.00 32.72 2.43
6878 7489 8.394121 CCAATCAACAGTAGAAGAAAATCTAGC 58.606 37.037 0.00 0.00 32.72 3.42
6879 7490 8.394121 CAATCAACAGTAGAAGAAAATCTAGCC 58.606 37.037 0.00 0.00 32.72 3.93
6880 7491 7.004555 TCAACAGTAGAAGAAAATCTAGCCA 57.995 36.000 0.00 0.00 32.72 4.75
6881 7492 7.450074 TCAACAGTAGAAGAAAATCTAGCCAA 58.550 34.615 0.00 0.00 32.72 4.52
6882 7493 7.387948 TCAACAGTAGAAGAAAATCTAGCCAAC 59.612 37.037 0.00 0.00 32.72 3.77
6883 7494 6.174049 ACAGTAGAAGAAAATCTAGCCAACC 58.826 40.000 0.00 0.00 32.72 3.77
6884 7495 6.013293 ACAGTAGAAGAAAATCTAGCCAACCT 60.013 38.462 0.00 0.00 32.72 3.50
6885 7496 7.180408 ACAGTAGAAGAAAATCTAGCCAACCTA 59.820 37.037 0.00 0.00 32.72 3.08
6886 7497 7.708752 CAGTAGAAGAAAATCTAGCCAACCTAG 59.291 40.741 0.00 0.00 44.09 3.02
6887 7498 5.432645 AGAAGAAAATCTAGCCAACCTAGC 58.567 41.667 0.00 0.00 42.73 3.42
6888 7499 4.844349 AGAAAATCTAGCCAACCTAGCA 57.156 40.909 0.00 0.00 42.73 3.49
6889 7500 5.179452 AGAAAATCTAGCCAACCTAGCAA 57.821 39.130 0.00 0.00 42.73 3.91
6890 7501 5.189180 AGAAAATCTAGCCAACCTAGCAAG 58.811 41.667 0.00 0.00 42.73 4.01
6891 7502 2.629336 ATCTAGCCAACCTAGCAAGC 57.371 50.000 0.00 0.00 42.73 4.01
6892 7503 1.573108 TCTAGCCAACCTAGCAAGCT 58.427 50.000 0.00 0.00 42.73 3.74
6893 7504 1.482593 TCTAGCCAACCTAGCAAGCTC 59.517 52.381 0.00 0.00 42.73 4.09
6894 7505 0.175760 TAGCCAACCTAGCAAGCTCG 59.824 55.000 0.00 0.00 35.03 5.03
6895 7506 1.376037 GCCAACCTAGCAAGCTCGT 60.376 57.895 0.00 0.00 0.00 4.18
6896 7507 1.639298 GCCAACCTAGCAAGCTCGTG 61.639 60.000 0.00 0.00 0.00 4.35
6897 7508 1.639298 CCAACCTAGCAAGCTCGTGC 61.639 60.000 1.95 1.95 45.28 5.34
6904 7515 3.349006 CAAGCTCGTGCGCAACCT 61.349 61.111 14.00 2.68 45.42 3.50
6905 7516 2.591715 AAGCTCGTGCGCAACCTT 60.592 55.556 14.00 9.50 45.42 3.50
6906 7517 1.301401 AAGCTCGTGCGCAACCTTA 60.301 52.632 14.00 0.00 45.42 2.69
6907 7518 0.673644 AAGCTCGTGCGCAACCTTAT 60.674 50.000 14.00 0.00 45.42 1.73
6908 7519 0.673644 AGCTCGTGCGCAACCTTATT 60.674 50.000 14.00 0.00 45.42 1.40
6909 7520 0.521242 GCTCGTGCGCAACCTTATTG 60.521 55.000 14.00 0.00 0.00 1.90
6910 7521 0.096976 CTCGTGCGCAACCTTATTGG 59.903 55.000 14.00 0.00 42.93 3.16
6911 7522 1.514014 CGTGCGCAACCTTATTGGC 60.514 57.895 14.00 0.00 40.22 4.52
6912 7523 1.883021 GTGCGCAACCTTATTGGCT 59.117 52.632 14.00 0.00 40.22 4.75
6913 7524 0.243636 GTGCGCAACCTTATTGGCTT 59.756 50.000 14.00 0.00 40.22 4.35
6914 7525 0.525761 TGCGCAACCTTATTGGCTTC 59.474 50.000 8.16 0.00 40.22 3.86
6915 7526 0.179137 GCGCAACCTTATTGGCTTCC 60.179 55.000 0.30 0.00 40.22 3.46
6916 7527 0.455815 CGCAACCTTATTGGCTTCCC 59.544 55.000 0.00 0.00 40.22 3.97
6917 7528 1.852633 GCAACCTTATTGGCTTCCCT 58.147 50.000 0.00 0.00 40.22 4.20
6918 7529 2.682563 CGCAACCTTATTGGCTTCCCTA 60.683 50.000 0.00 0.00 40.22 3.53
6919 7530 3.566351 GCAACCTTATTGGCTTCCCTAT 58.434 45.455 0.00 0.00 40.22 2.57
6920 7531 3.960755 GCAACCTTATTGGCTTCCCTATT 59.039 43.478 0.00 0.00 40.22 1.73
6921 7532 5.137551 GCAACCTTATTGGCTTCCCTATTA 58.862 41.667 0.00 0.00 40.22 0.98
6922 7533 5.009710 GCAACCTTATTGGCTTCCCTATTAC 59.990 44.000 0.00 0.00 40.22 1.89
6923 7534 5.987019 ACCTTATTGGCTTCCCTATTACA 57.013 39.130 0.00 0.00 40.22 2.41
6924 7535 6.335781 ACCTTATTGGCTTCCCTATTACAA 57.664 37.500 0.00 0.00 40.22 2.41
6925 7536 6.922540 ACCTTATTGGCTTCCCTATTACAAT 58.077 36.000 0.00 0.00 40.22 2.71
6926 7537 6.777580 ACCTTATTGGCTTCCCTATTACAATG 59.222 38.462 0.00 0.00 40.22 2.82
6927 7538 6.777580 CCTTATTGGCTTCCCTATTACAATGT 59.222 38.462 0.00 0.00 31.71 2.71
6928 7539 7.287696 CCTTATTGGCTTCCCTATTACAATGTT 59.712 37.037 0.00 0.00 31.71 2.71
6929 7540 6.715347 ATTGGCTTCCCTATTACAATGTTC 57.285 37.500 0.00 0.00 0.00 3.18
6930 7541 5.186256 TGGCTTCCCTATTACAATGTTCA 57.814 39.130 0.00 0.00 0.00 3.18
6931 7542 5.575157 TGGCTTCCCTATTACAATGTTCAA 58.425 37.500 0.00 0.00 0.00 2.69
6932 7543 6.013379 TGGCTTCCCTATTACAATGTTCAAA 58.987 36.000 0.00 0.00 0.00 2.69
6933 7544 6.071616 TGGCTTCCCTATTACAATGTTCAAAC 60.072 38.462 0.00 0.00 0.00 2.93
6934 7545 6.330278 GCTTCCCTATTACAATGTTCAAACC 58.670 40.000 0.00 0.00 0.00 3.27
6935 7546 6.152831 GCTTCCCTATTACAATGTTCAAACCT 59.847 38.462 0.00 0.00 0.00 3.50
6936 7547 7.338449 GCTTCCCTATTACAATGTTCAAACCTA 59.662 37.037 0.00 0.00 0.00 3.08
6937 7548 8.801882 TTCCCTATTACAATGTTCAAACCTAG 57.198 34.615 0.00 0.00 0.00 3.02
6938 7549 8.153221 TCCCTATTACAATGTTCAAACCTAGA 57.847 34.615 0.00 0.00 0.00 2.43
6939 7550 8.265055 TCCCTATTACAATGTTCAAACCTAGAG 58.735 37.037 0.00 0.00 0.00 2.43
6940 7551 7.499232 CCCTATTACAATGTTCAAACCTAGAGG 59.501 40.741 0.00 0.00 42.17 3.69
6956 7567 2.973945 AGAGGTAGGAAAATCACACGC 58.026 47.619 0.00 0.00 0.00 5.34
6957 7568 2.007608 GAGGTAGGAAAATCACACGCC 58.992 52.381 0.00 0.00 0.00 5.68
6958 7569 1.349688 AGGTAGGAAAATCACACGCCA 59.650 47.619 0.00 0.00 0.00 5.69
6959 7570 2.156098 GGTAGGAAAATCACACGCCAA 58.844 47.619 0.00 0.00 0.00 4.52
6960 7571 2.554893 GGTAGGAAAATCACACGCCAAA 59.445 45.455 0.00 0.00 0.00 3.28
6961 7572 3.004944 GGTAGGAAAATCACACGCCAAAA 59.995 43.478 0.00 0.00 0.00 2.44
6962 7573 3.810310 AGGAAAATCACACGCCAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
6963 7574 4.335400 AGGAAAATCACACGCCAAAAAT 57.665 36.364 0.00 0.00 0.00 1.82
6964 7575 5.461032 AGGAAAATCACACGCCAAAAATA 57.539 34.783 0.00 0.00 0.00 1.40
6965 7576 5.469479 AGGAAAATCACACGCCAAAAATAG 58.531 37.500 0.00 0.00 0.00 1.73
6966 7577 4.091365 GGAAAATCACACGCCAAAAATAGC 59.909 41.667 0.00 0.00 0.00 2.97
6967 7578 3.932545 AATCACACGCCAAAAATAGCA 57.067 38.095 0.00 0.00 0.00 3.49
6968 7579 3.932545 ATCACACGCCAAAAATAGCAA 57.067 38.095 0.00 0.00 0.00 3.91
6969 7580 3.932545 TCACACGCCAAAAATAGCAAT 57.067 38.095 0.00 0.00 0.00 3.56
6970 7581 3.832276 TCACACGCCAAAAATAGCAATC 58.168 40.909 0.00 0.00 0.00 2.67
6971 7582 3.254411 TCACACGCCAAAAATAGCAATCA 59.746 39.130 0.00 0.00 0.00 2.57
6972 7583 4.082300 TCACACGCCAAAAATAGCAATCAT 60.082 37.500 0.00 0.00 0.00 2.45
6973 7584 5.124617 TCACACGCCAAAAATAGCAATCATA 59.875 36.000 0.00 0.00 0.00 2.15
6974 7585 5.804473 CACACGCCAAAAATAGCAATCATAA 59.196 36.000 0.00 0.00 0.00 1.90
6975 7586 6.309980 CACACGCCAAAAATAGCAATCATAAA 59.690 34.615 0.00 0.00 0.00 1.40
6976 7587 6.870965 ACACGCCAAAAATAGCAATCATAAAA 59.129 30.769 0.00 0.00 0.00 1.52
6977 7588 7.386299 ACACGCCAAAAATAGCAATCATAAAAA 59.614 29.630 0.00 0.00 0.00 1.94
7004 7615 4.479993 GCCGCTCCTGCTGACCAT 62.480 66.667 0.00 0.00 36.97 3.55
7005 7616 2.202987 CCGCTCCTGCTGACCATC 60.203 66.667 0.00 0.00 36.97 3.51
7006 7617 2.202987 CGCTCCTGCTGACCATCC 60.203 66.667 0.00 0.00 36.97 3.51
7007 7618 2.202987 GCTCCTGCTGACCATCCG 60.203 66.667 0.00 0.00 36.03 4.18
7008 7619 2.725312 GCTCCTGCTGACCATCCGA 61.725 63.158 0.00 0.00 36.03 4.55
7009 7620 1.142748 CTCCTGCTGACCATCCGAC 59.857 63.158 0.00 0.00 0.00 4.79
7010 7621 1.607801 CTCCTGCTGACCATCCGACA 61.608 60.000 0.00 0.00 0.00 4.35
7011 7622 0.977627 TCCTGCTGACCATCCGACAT 60.978 55.000 0.00 0.00 0.00 3.06
7012 7623 0.107508 CCTGCTGACCATCCGACATT 60.108 55.000 0.00 0.00 0.00 2.71
7013 7624 1.138859 CCTGCTGACCATCCGACATTA 59.861 52.381 0.00 0.00 0.00 1.90
7014 7625 2.224378 CCTGCTGACCATCCGACATTAT 60.224 50.000 0.00 0.00 0.00 1.28
7015 7626 3.470709 CTGCTGACCATCCGACATTATT 58.529 45.455 0.00 0.00 0.00 1.40
7016 7627 3.466836 TGCTGACCATCCGACATTATTC 58.533 45.455 0.00 0.00 0.00 1.75
7017 7628 3.118445 TGCTGACCATCCGACATTATTCA 60.118 43.478 0.00 0.00 0.00 2.57
7018 7629 4.067896 GCTGACCATCCGACATTATTCAT 58.932 43.478 0.00 0.00 0.00 2.57
7019 7630 4.153117 GCTGACCATCCGACATTATTCATC 59.847 45.833 0.00 0.00 0.00 2.92
7020 7631 4.306600 TGACCATCCGACATTATTCATCG 58.693 43.478 0.00 0.00 35.62 3.84
7021 7632 4.202212 TGACCATCCGACATTATTCATCGT 60.202 41.667 0.00 0.00 34.02 3.73
7022 7633 4.703897 ACCATCCGACATTATTCATCGTT 58.296 39.130 0.00 0.00 34.02 3.85
7023 7634 5.123227 ACCATCCGACATTATTCATCGTTT 58.877 37.500 0.00 0.00 34.02 3.60
7024 7635 5.236478 ACCATCCGACATTATTCATCGTTTC 59.764 40.000 0.00 0.00 34.02 2.78
7025 7636 5.236263 CCATCCGACATTATTCATCGTTTCA 59.764 40.000 0.00 0.00 34.02 2.69
7026 7637 6.238347 CCATCCGACATTATTCATCGTTTCAA 60.238 38.462 0.00 0.00 34.02 2.69
7027 7638 6.918892 TCCGACATTATTCATCGTTTCAAT 57.081 33.333 0.00 0.00 34.02 2.57
7028 7639 8.495148 CATCCGACATTATTCATCGTTTCAATA 58.505 33.333 0.00 0.00 34.02 1.90
7029 7640 8.426881 TCCGACATTATTCATCGTTTCAATAA 57.573 30.769 0.00 0.00 34.02 1.40
7030 7641 8.332464 TCCGACATTATTCATCGTTTCAATAAC 58.668 33.333 0.00 0.00 34.02 1.89
7031 7642 7.586300 CCGACATTATTCATCGTTTCAATAACC 59.414 37.037 0.00 0.00 34.02 2.85
7032 7643 8.335356 CGACATTATTCATCGTTTCAATAACCT 58.665 33.333 0.00 0.00 0.00 3.50
7033 7644 9.651718 GACATTATTCATCGTTTCAATAACCTC 57.348 33.333 0.00 0.00 0.00 3.85
7034 7645 8.621286 ACATTATTCATCGTTTCAATAACCTCC 58.379 33.333 0.00 0.00 0.00 4.30
7035 7646 8.620416 CATTATTCATCGTTTCAATAACCTCCA 58.380 33.333 0.00 0.00 0.00 3.86
7036 7647 8.568676 TTATTCATCGTTTCAATAACCTCCAA 57.431 30.769 0.00 0.00 0.00 3.53
7037 7648 6.885952 TTCATCGTTTCAATAACCTCCAAA 57.114 33.333 0.00 0.00 0.00 3.28
7038 7649 7.461182 TTCATCGTTTCAATAACCTCCAAAT 57.539 32.000 0.00 0.00 0.00 2.32
7039 7650 7.461182 TCATCGTTTCAATAACCTCCAAATT 57.539 32.000 0.00 0.00 0.00 1.82
7040 7651 8.568676 TCATCGTTTCAATAACCTCCAAATTA 57.431 30.769 0.00 0.00 0.00 1.40
7041 7652 9.184523 TCATCGTTTCAATAACCTCCAAATTAT 57.815 29.630 0.00 0.00 0.00 1.28
7042 7653 9.450807 CATCGTTTCAATAACCTCCAAATTATC 57.549 33.333 0.00 0.00 0.00 1.75
7043 7654 8.568676 TCGTTTCAATAACCTCCAAATTATCA 57.431 30.769 0.00 0.00 0.00 2.15
7044 7655 8.673711 TCGTTTCAATAACCTCCAAATTATCAG 58.326 33.333 0.00 0.00 0.00 2.90
7045 7656 8.673711 CGTTTCAATAACCTCCAAATTATCAGA 58.326 33.333 0.00 0.00 0.00 3.27
7065 7676 6.494842 TCAGAATTAATAACAAGGCGATTGC 58.505 36.000 0.00 0.00 43.15 3.56
7066 7677 6.094742 TCAGAATTAATAACAAGGCGATTGCA 59.905 34.615 7.38 0.00 43.15 4.08
7067 7678 6.751425 CAGAATTAATAACAAGGCGATTGCAA 59.249 34.615 7.38 0.00 43.15 4.08
7068 7679 6.751888 AGAATTAATAACAAGGCGATTGCAAC 59.248 34.615 0.00 0.00 43.15 4.17
7069 7680 2.939460 ATAACAAGGCGATTGCAACC 57.061 45.000 0.00 0.00 43.15 3.77
7070 7681 0.885196 TAACAAGGCGATTGCAACCC 59.115 50.000 0.00 2.54 43.15 4.11
7071 7682 2.141122 AACAAGGCGATTGCAACCCG 62.141 55.000 16.06 16.06 43.15 5.28
7090 7701 4.361253 ACGTTTGTGAGCGCATCT 57.639 50.000 11.47 0.00 32.23 2.90
7091 7702 1.862123 ACGTTTGTGAGCGCATCTG 59.138 52.632 11.47 0.00 32.23 2.90
7148 7759 1.009903 CGCGTGTCGATACCACCAAA 61.010 55.000 6.73 0.00 41.67 3.28
7163 7774 3.551454 CCACCAAATTTCACTCAGCACAG 60.551 47.826 0.00 0.00 0.00 3.66
7203 7814 9.021807 AGCGCTCTAGTAGAATAATAATACCAA 57.978 33.333 2.64 0.00 0.00 3.67
7204 7815 9.804758 GCGCTCTAGTAGAATAATAATACCAAT 57.195 33.333 0.00 0.00 0.00 3.16
7270 7888 3.507622 AGAGCCTGTTCTATTTTTGCACC 59.492 43.478 0.00 0.00 0.00 5.01
7271 7889 3.230134 AGCCTGTTCTATTTTTGCACCA 58.770 40.909 0.00 0.00 0.00 4.17
7282 7900 7.526608 TCTATTTTTGCACCAGAAAAGTATCG 58.473 34.615 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.549730 GCAACTGCTTTTGGGGGT 58.450 55.556 0.00 0.00 38.21 4.95
55 56 5.762045 AGACAGAACAAAATCCGAATGTTG 58.238 37.500 0.00 0.00 37.41 3.33
83 84 7.282450 GCCGAAGAAATTTTATAGAGGAGGAAA 59.718 37.037 0.00 0.00 0.00 3.13
84 85 6.766467 GCCGAAGAAATTTTATAGAGGAGGAA 59.234 38.462 0.00 0.00 0.00 3.36
85 86 6.289064 GCCGAAGAAATTTTATAGAGGAGGA 58.711 40.000 0.00 0.00 0.00 3.71
86 87 5.470437 GGCCGAAGAAATTTTATAGAGGAGG 59.530 44.000 0.00 0.00 0.00 4.30
95 96 2.814919 TCGCAAGGCCGAAGAAATTTTA 59.185 40.909 0.00 0.00 33.77 1.52
96 97 1.611491 TCGCAAGGCCGAAGAAATTTT 59.389 42.857 0.00 0.00 33.77 1.82
107 108 1.024271 TGAAGCAATATCGCAAGGCC 58.976 50.000 0.00 0.00 38.47 5.19
230 771 0.531311 GTGTCCCCGCTTATTACCCG 60.531 60.000 0.00 0.00 0.00 5.28
390 931 1.608717 AAGGGCTAGAGGCGTGACAG 61.609 60.000 0.00 0.00 42.94 3.51
402 943 1.559682 AGATGAGCGGAAAAAGGGCTA 59.440 47.619 0.00 0.00 37.10 3.93
488 1032 2.164827 TCGCGTAGATAGCTTTTGGTGA 59.835 45.455 5.77 0.00 0.00 4.02
491 1035 3.184581 GGATTCGCGTAGATAGCTTTTGG 59.815 47.826 5.77 0.00 0.00 3.28
492 1036 3.802139 TGGATTCGCGTAGATAGCTTTTG 59.198 43.478 5.77 0.00 0.00 2.44
498 1046 7.639162 AATTTTAGTGGATTCGCGTAGATAG 57.361 36.000 5.77 0.00 0.00 2.08
518 1066 9.959749 TTCTTTCTTTTTGCGATGTACTAATTT 57.040 25.926 0.00 0.00 0.00 1.82
519 1067 9.959749 TTTCTTTCTTTTTGCGATGTACTAATT 57.040 25.926 0.00 0.00 0.00 1.40
520 1068 9.612620 CTTTCTTTCTTTTTGCGATGTACTAAT 57.387 29.630 0.00 0.00 0.00 1.73
521 1069 8.832521 TCTTTCTTTCTTTTTGCGATGTACTAA 58.167 29.630 0.00 0.00 0.00 2.24
522 1070 8.373048 TCTTTCTTTCTTTTTGCGATGTACTA 57.627 30.769 0.00 0.00 0.00 1.82
523 1071 7.259290 TCTTTCTTTCTTTTTGCGATGTACT 57.741 32.000 0.00 0.00 0.00 2.73
524 1072 7.908193 TTCTTTCTTTCTTTTTGCGATGTAC 57.092 32.000 0.00 0.00 0.00 2.90
525 1073 8.918961 TTTTCTTTCTTTCTTTTTGCGATGTA 57.081 26.923 0.00 0.00 0.00 2.29
526 1074 7.759433 TCTTTTCTTTCTTTCTTTTTGCGATGT 59.241 29.630 0.00 0.00 0.00 3.06
527 1075 8.118893 TCTTTTCTTTCTTTCTTTTTGCGATG 57.881 30.769 0.00 0.00 0.00 3.84
528 1076 8.702163 TTCTTTTCTTTCTTTCTTTTTGCGAT 57.298 26.923 0.00 0.00 0.00 4.58
529 1077 8.702163 ATTCTTTTCTTTCTTTCTTTTTGCGA 57.298 26.923 0.00 0.00 0.00 5.10
530 1078 8.058328 GGATTCTTTTCTTTCTTTCTTTTTGCG 58.942 33.333 0.00 0.00 0.00 4.85
531 1079 8.882736 TGGATTCTTTTCTTTCTTTCTTTTTGC 58.117 29.630 0.00 0.00 0.00 3.68
546 1094 9.817809 GGGGATTAATTTTAGTGGATTCTTTTC 57.182 33.333 0.00 0.00 0.00 2.29
547 1095 9.560860 AGGGGATTAATTTTAGTGGATTCTTTT 57.439 29.630 0.00 0.00 0.00 2.27
549 1097 9.868160 CTAGGGGATTAATTTTAGTGGATTCTT 57.132 33.333 0.00 0.00 0.00 2.52
550 1098 9.237706 TCTAGGGGATTAATTTTAGTGGATTCT 57.762 33.333 0.00 0.00 0.00 2.40
557 1105 9.487442 TGCAAAATCTAGGGGATTAATTTTAGT 57.513 29.630 0.00 0.00 43.17 2.24
581 1129 0.937304 TCAACTGACTCGCTGTTTGC 59.063 50.000 0.00 0.00 36.64 3.68
675 1223 4.177026 AGTTTGATGATGTGCTACGAGTC 58.823 43.478 0.00 0.00 0.00 3.36
677 1225 4.428209 AGAGTTTGATGATGTGCTACGAG 58.572 43.478 0.00 0.00 0.00 4.18
678 1226 4.424626 GAGAGTTTGATGATGTGCTACGA 58.575 43.478 0.00 0.00 0.00 3.43
679 1227 3.241553 CGAGAGTTTGATGATGTGCTACG 59.758 47.826 0.00 0.00 0.00 3.51
891 1458 1.077828 ACACACATGAGGAGGAGGAGA 59.922 52.381 0.00 0.00 0.00 3.71
893 1460 2.311841 TCTACACACATGAGGAGGAGGA 59.688 50.000 0.00 0.00 0.00 3.71
896 1463 3.092301 CACTCTACACACATGAGGAGGA 58.908 50.000 0.00 0.00 34.61 3.71
923 1507 0.098728 CCACATCATTTCCGGCGAAC 59.901 55.000 9.30 0.00 0.00 3.95
945 1529 4.559251 GCGTCAGTACTAGTCATCAACAAG 59.441 45.833 0.00 0.00 0.00 3.16
964 1548 1.578206 GCAAAACAGGAGGAGGCGTC 61.578 60.000 0.00 0.00 0.00 5.19
1727 2323 2.435586 CCTCGGCCTTGAGCACAG 60.436 66.667 0.00 0.00 46.50 3.66
1746 2342 2.045045 CCATTCCGGCTTGCCTCA 60.045 61.111 10.12 0.00 0.00 3.86
1830 2426 1.301677 GCCACCGGAGCTTCTTGAAG 61.302 60.000 9.46 6.04 0.00 3.02
2184 2780 0.318107 CAGCAACAAACGCCTTGAGG 60.318 55.000 4.94 0.00 38.50 3.86
2499 3095 1.742268 GCAAGAAGGCAGATCCAGAAC 59.258 52.381 0.00 0.00 37.29 3.01
2574 3170 5.591877 GTCATGGAGGCTGAATATTGTCTTT 59.408 40.000 0.00 0.00 0.00 2.52
2604 3200 3.810373 CATGAACTCAAACCAGTTACGC 58.190 45.455 0.00 0.00 36.71 4.42
2736 3332 2.932614 CAGATGCGAGAAAAGACCGATT 59.067 45.455 0.00 0.00 0.00 3.34
2889 3485 0.036732 TCAGCTTGAGCCGGTGAATT 59.963 50.000 1.90 0.00 43.38 2.17
4065 4661 7.502226 AGATGTTTTGTTCCTTCTGTAATGTCA 59.498 33.333 0.00 0.00 0.00 3.58
4302 4898 8.105097 TCTTCATAAGAGACAGGATATCTTCG 57.895 38.462 2.05 0.00 35.09 3.79
4463 5062 5.593095 GGTTTACCTTCTCCAAGTTTCAGTT 59.407 40.000 0.00 0.00 0.00 3.16
4488 5087 0.958091 TGGCATGGTTCTGGTTTTCG 59.042 50.000 0.00 0.00 0.00 3.46
4554 5153 8.038862 TGAGAGCCTCCTCAAAATAATTATCT 57.961 34.615 0.00 0.00 39.96 1.98
4968 5567 0.837272 TGCCACTGGATACCTTAGCC 59.163 55.000 0.00 0.00 34.02 3.93
5595 6194 2.024414 GACACCACAAGAAACCAGCTT 58.976 47.619 0.00 0.00 0.00 3.74
5607 6206 0.620030 CCATGATCCAGGACACCACA 59.380 55.000 0.00 0.00 0.00 4.17
6022 6621 1.968540 GCACCAGCACTCCCAGAAC 60.969 63.158 0.00 0.00 41.58 3.01
6064 6663 8.636213 AGTGAAGATGTCAATGATTTGAAACTT 58.364 29.630 0.00 0.00 43.29 2.66
6487 7097 3.776969 TGATTCACCATGAGACTAAGCCT 59.223 43.478 0.00 0.00 0.00 4.58
6766 7377 9.921637 GGTTGAATAAAGTCCATATGTTTTTCA 57.078 29.630 1.24 4.22 0.00 2.69
6767 7378 9.072294 CGGTTGAATAAAGTCCATATGTTTTTC 57.928 33.333 1.24 1.84 0.00 2.29
6768 7379 8.798402 TCGGTTGAATAAAGTCCATATGTTTTT 58.202 29.630 1.24 2.34 0.00 1.94
6769 7380 8.343168 TCGGTTGAATAAAGTCCATATGTTTT 57.657 30.769 1.24 2.68 0.00 2.43
6770 7381 7.931578 TCGGTTGAATAAAGTCCATATGTTT 57.068 32.000 1.24 0.00 0.00 2.83
6771 7382 7.931578 TTCGGTTGAATAAAGTCCATATGTT 57.068 32.000 1.24 0.00 0.00 2.71
6772 7383 7.931578 TTTCGGTTGAATAAAGTCCATATGT 57.068 32.000 1.24 0.00 33.20 2.29
6775 7386 9.451002 TGTTATTTCGGTTGAATAAAGTCCATA 57.549 29.630 0.00 0.00 33.20 2.74
6776 7387 8.343168 TGTTATTTCGGTTGAATAAAGTCCAT 57.657 30.769 0.00 0.00 33.20 3.41
6777 7388 7.662258 TCTGTTATTTCGGTTGAATAAAGTCCA 59.338 33.333 0.00 0.00 33.20 4.02
6778 7389 8.036273 TCTGTTATTTCGGTTGAATAAAGTCC 57.964 34.615 0.00 0.00 33.20 3.85
6785 7396 8.956426 ACAATGTATCTGTTATTTCGGTTGAAT 58.044 29.630 0.00 0.00 33.20 2.57
6786 7397 8.330466 ACAATGTATCTGTTATTTCGGTTGAA 57.670 30.769 0.00 0.00 0.00 2.69
6787 7398 7.915293 ACAATGTATCTGTTATTTCGGTTGA 57.085 32.000 0.00 0.00 0.00 3.18
6788 7399 8.849490 CAAACAATGTATCTGTTATTTCGGTTG 58.151 33.333 0.00 0.00 35.98 3.77
6789 7400 8.573035 ACAAACAATGTATCTGTTATTTCGGTT 58.427 29.630 0.00 0.00 41.63 4.44
6790 7401 8.020819 CACAAACAATGTATCTGTTATTTCGGT 58.979 33.333 0.00 0.00 41.46 4.69
6791 7402 8.233868 TCACAAACAATGTATCTGTTATTTCGG 58.766 33.333 0.00 0.00 41.46 4.30
6792 7403 9.265938 CTCACAAACAATGTATCTGTTATTTCG 57.734 33.333 0.00 0.00 41.46 3.46
6793 7404 9.559958 CCTCACAAACAATGTATCTGTTATTTC 57.440 33.333 0.00 0.00 41.46 2.17
6794 7405 9.295825 TCCTCACAAACAATGTATCTGTTATTT 57.704 29.630 0.00 0.00 41.46 1.40
6795 7406 8.862325 TCCTCACAAACAATGTATCTGTTATT 57.138 30.769 0.00 0.00 41.46 1.40
6796 7407 8.862325 TTCCTCACAAACAATGTATCTGTTAT 57.138 30.769 0.00 0.00 41.46 1.89
6797 7408 8.684386 TTTCCTCACAAACAATGTATCTGTTA 57.316 30.769 0.00 0.00 41.46 2.41
6798 7409 7.255590 CCTTTCCTCACAAACAATGTATCTGTT 60.256 37.037 0.00 0.00 41.46 3.16
6799 7410 6.207417 CCTTTCCTCACAAACAATGTATCTGT 59.793 38.462 0.00 0.00 41.46 3.41
6800 7411 6.207417 ACCTTTCCTCACAAACAATGTATCTG 59.793 38.462 0.00 0.00 41.46 2.90
6801 7412 6.306987 ACCTTTCCTCACAAACAATGTATCT 58.693 36.000 0.00 0.00 41.46 1.98
6802 7413 6.575162 ACCTTTCCTCACAAACAATGTATC 57.425 37.500 0.00 0.00 41.46 2.24
6803 7414 7.001674 TGTACCTTTCCTCACAAACAATGTAT 58.998 34.615 0.00 0.00 41.46 2.29
6804 7415 6.358178 TGTACCTTTCCTCACAAACAATGTA 58.642 36.000 0.00 0.00 41.46 2.29
6805 7416 5.197451 TGTACCTTTCCTCACAAACAATGT 58.803 37.500 0.00 0.00 45.34 2.71
6806 7417 5.766150 TGTACCTTTCCTCACAAACAATG 57.234 39.130 0.00 0.00 0.00 2.82
6807 7418 6.777580 AGATTGTACCTTTCCTCACAAACAAT 59.222 34.615 0.00 0.00 38.60 2.71
6808 7419 6.126409 AGATTGTACCTTTCCTCACAAACAA 58.874 36.000 0.00 0.00 34.79 2.83
6809 7420 5.690865 AGATTGTACCTTTCCTCACAAACA 58.309 37.500 0.00 0.00 34.79 2.83
6810 7421 5.763204 TGAGATTGTACCTTTCCTCACAAAC 59.237 40.000 0.00 0.00 34.79 2.93
6811 7422 5.935945 TGAGATTGTACCTTTCCTCACAAA 58.064 37.500 0.00 0.00 34.79 2.83
6812 7423 5.560722 TGAGATTGTACCTTTCCTCACAA 57.439 39.130 0.00 0.00 35.53 3.33
6813 7424 5.560722 TTGAGATTGTACCTTTCCTCACA 57.439 39.130 0.00 0.00 31.33 3.58
6814 7425 6.173339 TGATTGAGATTGTACCTTTCCTCAC 58.827 40.000 0.00 0.00 31.33 3.51
6815 7426 6.373005 TGATTGAGATTGTACCTTTCCTCA 57.627 37.500 0.00 0.00 0.00 3.86
6816 7427 7.659390 CCTATGATTGAGATTGTACCTTTCCTC 59.341 40.741 0.00 0.00 0.00 3.71
6817 7428 7.512992 CCTATGATTGAGATTGTACCTTTCCT 58.487 38.462 0.00 0.00 0.00 3.36
6818 7429 6.205658 GCCTATGATTGAGATTGTACCTTTCC 59.794 42.308 0.00 0.00 0.00 3.13
6819 7430 6.995091 AGCCTATGATTGAGATTGTACCTTTC 59.005 38.462 0.00 0.00 0.00 2.62
6820 7431 6.904626 AGCCTATGATTGAGATTGTACCTTT 58.095 36.000 0.00 0.00 0.00 3.11
6821 7432 6.465035 GGAGCCTATGATTGAGATTGTACCTT 60.465 42.308 0.00 0.00 0.00 3.50
6822 7433 5.012561 GGAGCCTATGATTGAGATTGTACCT 59.987 44.000 0.00 0.00 0.00 3.08
6823 7434 5.012561 AGGAGCCTATGATTGAGATTGTACC 59.987 44.000 0.00 0.00 0.00 3.34
6824 7435 6.107901 AGGAGCCTATGATTGAGATTGTAC 57.892 41.667 0.00 0.00 0.00 2.90
6825 7436 5.840693 TGAGGAGCCTATGATTGAGATTGTA 59.159 40.000 0.00 0.00 0.00 2.41
6826 7437 4.657504 TGAGGAGCCTATGATTGAGATTGT 59.342 41.667 0.00 0.00 0.00 2.71
6827 7438 5.224821 TGAGGAGCCTATGATTGAGATTG 57.775 43.478 0.00 0.00 0.00 2.67
6828 7439 5.901413 TTGAGGAGCCTATGATTGAGATT 57.099 39.130 0.00 0.00 0.00 2.40
6829 7440 5.455899 GGTTTGAGGAGCCTATGATTGAGAT 60.456 44.000 0.00 0.00 0.00 2.75
6830 7441 4.141620 GGTTTGAGGAGCCTATGATTGAGA 60.142 45.833 0.00 0.00 0.00 3.27
6831 7442 4.133078 GGTTTGAGGAGCCTATGATTGAG 58.867 47.826 0.00 0.00 0.00 3.02
6832 7443 3.523157 TGGTTTGAGGAGCCTATGATTGA 59.477 43.478 0.00 0.00 0.00 2.57
6833 7444 3.889815 TGGTTTGAGGAGCCTATGATTG 58.110 45.455 0.00 0.00 0.00 2.67
6834 7445 4.591321 TTGGTTTGAGGAGCCTATGATT 57.409 40.909 0.00 0.00 0.00 2.57
6835 7446 4.166725 TGATTGGTTTGAGGAGCCTATGAT 59.833 41.667 0.00 0.00 0.00 2.45
6836 7447 3.523157 TGATTGGTTTGAGGAGCCTATGA 59.477 43.478 0.00 0.00 0.00 2.15
6837 7448 3.889815 TGATTGGTTTGAGGAGCCTATG 58.110 45.455 0.00 0.00 0.00 2.23
6838 7449 4.263905 TGTTGATTGGTTTGAGGAGCCTAT 60.264 41.667 0.00 0.00 0.00 2.57
6839 7450 3.073798 TGTTGATTGGTTTGAGGAGCCTA 59.926 43.478 0.00 0.00 0.00 3.93
6840 7451 2.158475 TGTTGATTGGTTTGAGGAGCCT 60.158 45.455 0.00 0.00 0.00 4.58
6841 7452 2.229784 CTGTTGATTGGTTTGAGGAGCC 59.770 50.000 0.00 0.00 0.00 4.70
6842 7453 2.887152 ACTGTTGATTGGTTTGAGGAGC 59.113 45.455 0.00 0.00 0.00 4.70
6843 7454 5.551233 TCTACTGTTGATTGGTTTGAGGAG 58.449 41.667 0.00 0.00 0.00 3.69
6844 7455 5.560722 TCTACTGTTGATTGGTTTGAGGA 57.439 39.130 0.00 0.00 0.00 3.71
6845 7456 5.997746 TCTTCTACTGTTGATTGGTTTGAGG 59.002 40.000 0.00 0.00 0.00 3.86
6846 7457 7.496529 TTCTTCTACTGTTGATTGGTTTGAG 57.503 36.000 0.00 0.00 0.00 3.02
6847 7458 7.873719 TTTCTTCTACTGTTGATTGGTTTGA 57.126 32.000 0.00 0.00 0.00 2.69
6848 7459 9.185192 GATTTTCTTCTACTGTTGATTGGTTTG 57.815 33.333 0.00 0.00 0.00 2.93
6849 7460 9.136323 AGATTTTCTTCTACTGTTGATTGGTTT 57.864 29.630 0.00 0.00 0.00 3.27
6850 7461 8.697507 AGATTTTCTTCTACTGTTGATTGGTT 57.302 30.769 0.00 0.00 0.00 3.67
6851 7462 9.442047 CTAGATTTTCTTCTACTGTTGATTGGT 57.558 33.333 0.00 0.00 0.00 3.67
6852 7463 8.394121 GCTAGATTTTCTTCTACTGTTGATTGG 58.606 37.037 0.00 0.00 0.00 3.16
6853 7464 8.394121 GGCTAGATTTTCTTCTACTGTTGATTG 58.606 37.037 0.00 0.00 0.00 2.67
6854 7465 8.103305 TGGCTAGATTTTCTTCTACTGTTGATT 58.897 33.333 0.00 0.00 0.00 2.57
6855 7466 7.624549 TGGCTAGATTTTCTTCTACTGTTGAT 58.375 34.615 0.00 0.00 0.00 2.57
6856 7467 7.004555 TGGCTAGATTTTCTTCTACTGTTGA 57.995 36.000 0.00 0.00 0.00 3.18
6857 7468 7.361286 GGTTGGCTAGATTTTCTTCTACTGTTG 60.361 40.741 0.00 0.00 0.00 3.33
6858 7469 6.655425 GGTTGGCTAGATTTTCTTCTACTGTT 59.345 38.462 0.00 0.00 0.00 3.16
6859 7470 6.013293 AGGTTGGCTAGATTTTCTTCTACTGT 60.013 38.462 0.00 0.00 0.00 3.55
6860 7471 6.410540 AGGTTGGCTAGATTTTCTTCTACTG 58.589 40.000 0.00 0.00 0.00 2.74
6861 7472 6.628644 AGGTTGGCTAGATTTTCTTCTACT 57.371 37.500 0.00 0.00 0.00 2.57
6862 7473 6.480651 GCTAGGTTGGCTAGATTTTCTTCTAC 59.519 42.308 0.00 0.00 0.00 2.59
6863 7474 6.156256 TGCTAGGTTGGCTAGATTTTCTTCTA 59.844 38.462 0.00 0.00 0.00 2.10
6864 7475 5.045578 TGCTAGGTTGGCTAGATTTTCTTCT 60.046 40.000 0.00 0.00 0.00 2.85
6865 7476 5.186198 TGCTAGGTTGGCTAGATTTTCTTC 58.814 41.667 0.00 0.00 0.00 2.87
6866 7477 5.179452 TGCTAGGTTGGCTAGATTTTCTT 57.821 39.130 0.00 0.00 0.00 2.52
6867 7478 4.844349 TGCTAGGTTGGCTAGATTTTCT 57.156 40.909 0.00 0.00 0.00 2.52
6868 7479 4.201960 GCTTGCTAGGTTGGCTAGATTTTC 60.202 45.833 0.00 0.00 35.27 2.29
6869 7480 3.696548 GCTTGCTAGGTTGGCTAGATTTT 59.303 43.478 0.00 0.00 35.27 1.82
6870 7481 3.054065 AGCTTGCTAGGTTGGCTAGATTT 60.054 43.478 0.00 0.00 35.27 2.17
6871 7482 2.507471 AGCTTGCTAGGTTGGCTAGATT 59.493 45.455 0.00 0.00 35.27 2.40
6872 7483 2.103941 GAGCTTGCTAGGTTGGCTAGAT 59.896 50.000 0.48 0.00 35.27 1.98
6873 7484 1.482593 GAGCTTGCTAGGTTGGCTAGA 59.517 52.381 0.48 0.00 35.27 2.43
6874 7485 1.804372 CGAGCTTGCTAGGTTGGCTAG 60.804 57.143 6.70 0.00 36.09 3.42
6875 7486 0.175760 CGAGCTTGCTAGGTTGGCTA 59.824 55.000 6.70 0.00 33.13 3.93
6876 7487 1.078848 CGAGCTTGCTAGGTTGGCT 60.079 57.895 6.70 0.00 35.86 4.75
6877 7488 1.376037 ACGAGCTTGCTAGGTTGGC 60.376 57.895 17.14 0.00 37.55 4.52
6878 7489 1.639298 GCACGAGCTTGCTAGGTTGG 61.639 60.000 17.14 8.28 39.59 3.77
6879 7490 1.790387 GCACGAGCTTGCTAGGTTG 59.210 57.895 12.29 12.29 39.59 3.77
6880 7491 1.738099 CGCACGAGCTTGCTAGGTT 60.738 57.895 8.67 0.00 40.62 3.50
6881 7492 2.125912 CGCACGAGCTTGCTAGGT 60.126 61.111 8.67 0.00 40.62 3.08
6882 7493 3.558411 GCGCACGAGCTTGCTAGG 61.558 66.667 0.30 0.43 40.62 3.02
6883 7494 2.382746 TTGCGCACGAGCTTGCTAG 61.383 57.895 11.12 0.00 40.62 3.42
6884 7495 2.356913 TTGCGCACGAGCTTGCTA 60.357 55.556 11.12 0.00 40.62 3.49
6885 7496 4.017877 GTTGCGCACGAGCTTGCT 62.018 61.111 11.12 0.00 40.62 3.91
6887 7498 1.565156 TAAGGTTGCGCACGAGCTTG 61.565 55.000 27.98 0.00 45.53 4.01
6888 7499 2.591715 AAGGTTGCGCACGAGCTT 60.592 55.556 18.24 18.24 42.07 3.74
6889 7500 0.673644 AATAAGGTTGCGCACGAGCT 60.674 50.000 11.12 9.20 39.81 4.09
6890 7501 0.521242 CAATAAGGTTGCGCACGAGC 60.521 55.000 11.12 6.33 37.71 5.03
6891 7502 0.096976 CCAATAAGGTTGCGCACGAG 59.903 55.000 11.12 0.00 0.00 4.18
6892 7503 1.917782 GCCAATAAGGTTGCGCACGA 61.918 55.000 11.12 0.00 40.61 4.35
6893 7504 1.514014 GCCAATAAGGTTGCGCACG 60.514 57.895 11.12 0.00 40.61 5.34
6894 7505 0.243636 AAGCCAATAAGGTTGCGCAC 59.756 50.000 11.12 5.37 40.61 5.34
6895 7506 0.525761 GAAGCCAATAAGGTTGCGCA 59.474 50.000 5.66 5.66 40.61 6.09
6896 7507 0.179137 GGAAGCCAATAAGGTTGCGC 60.179 55.000 0.00 0.00 40.61 6.09
6897 7508 0.455815 GGGAAGCCAATAAGGTTGCG 59.544 55.000 0.00 0.00 40.61 4.85
6898 7509 1.852633 AGGGAAGCCAATAAGGTTGC 58.147 50.000 0.00 0.00 40.61 4.17
6899 7510 6.126409 TGTAATAGGGAAGCCAATAAGGTTG 58.874 40.000 0.00 0.00 40.61 3.77
6900 7511 6.335781 TGTAATAGGGAAGCCAATAAGGTT 57.664 37.500 0.00 0.00 40.61 3.50
6901 7512 5.987019 TGTAATAGGGAAGCCAATAAGGT 57.013 39.130 0.00 0.00 40.61 3.50
6902 7513 6.777580 ACATTGTAATAGGGAAGCCAATAAGG 59.222 38.462 0.00 0.00 41.84 2.69
6903 7514 7.823745 ACATTGTAATAGGGAAGCCAATAAG 57.176 36.000 0.00 0.00 0.00 1.73
6904 7515 7.836685 TGAACATTGTAATAGGGAAGCCAATAA 59.163 33.333 0.00 0.00 0.00 1.40
6905 7516 7.350382 TGAACATTGTAATAGGGAAGCCAATA 58.650 34.615 0.00 0.00 0.00 1.90
6906 7517 6.194235 TGAACATTGTAATAGGGAAGCCAAT 58.806 36.000 0.00 0.00 0.00 3.16
6907 7518 5.575157 TGAACATTGTAATAGGGAAGCCAA 58.425 37.500 0.00 0.00 0.00 4.52
6908 7519 5.186256 TGAACATTGTAATAGGGAAGCCA 57.814 39.130 0.00 0.00 0.00 4.75
6909 7520 6.330278 GTTTGAACATTGTAATAGGGAAGCC 58.670 40.000 0.00 0.00 0.00 4.35
6910 7521 6.152831 AGGTTTGAACATTGTAATAGGGAAGC 59.847 38.462 0.00 0.00 0.00 3.86
6911 7522 7.703058 AGGTTTGAACATTGTAATAGGGAAG 57.297 36.000 0.00 0.00 0.00 3.46
6912 7523 8.607713 TCTAGGTTTGAACATTGTAATAGGGAA 58.392 33.333 0.00 0.00 0.00 3.97
6913 7524 8.153221 TCTAGGTTTGAACATTGTAATAGGGA 57.847 34.615 0.00 0.00 0.00 4.20
6914 7525 7.499232 CCTCTAGGTTTGAACATTGTAATAGGG 59.501 40.741 0.00 0.00 0.00 3.53
6915 7526 8.438676 CCTCTAGGTTTGAACATTGTAATAGG 57.561 38.462 0.00 0.00 0.00 2.57
6933 7544 4.683832 CGTGTGATTTTCCTACCTCTAGG 58.316 47.826 0.00 0.00 41.19 3.02
6934 7545 4.113354 GCGTGTGATTTTCCTACCTCTAG 58.887 47.826 0.00 0.00 0.00 2.43
6935 7546 3.118884 GGCGTGTGATTTTCCTACCTCTA 60.119 47.826 0.00 0.00 0.00 2.43
6936 7547 2.354805 GGCGTGTGATTTTCCTACCTCT 60.355 50.000 0.00 0.00 0.00 3.69
6937 7548 2.007608 GGCGTGTGATTTTCCTACCTC 58.992 52.381 0.00 0.00 0.00 3.85
6938 7549 1.349688 TGGCGTGTGATTTTCCTACCT 59.650 47.619 0.00 0.00 0.00 3.08
6939 7550 1.816074 TGGCGTGTGATTTTCCTACC 58.184 50.000 0.00 0.00 0.00 3.18
6940 7551 3.907894 TTTGGCGTGTGATTTTCCTAC 57.092 42.857 0.00 0.00 0.00 3.18
6941 7552 4.920640 TTTTTGGCGTGTGATTTTCCTA 57.079 36.364 0.00 0.00 0.00 2.94
6942 7553 3.810310 TTTTTGGCGTGTGATTTTCCT 57.190 38.095 0.00 0.00 0.00 3.36
6943 7554 4.091365 GCTATTTTTGGCGTGTGATTTTCC 59.909 41.667 0.00 0.00 0.00 3.13
6944 7555 4.683781 TGCTATTTTTGGCGTGTGATTTTC 59.316 37.500 0.00 0.00 0.00 2.29
6945 7556 4.626042 TGCTATTTTTGGCGTGTGATTTT 58.374 34.783 0.00 0.00 0.00 1.82
6946 7557 4.250116 TGCTATTTTTGGCGTGTGATTT 57.750 36.364 0.00 0.00 0.00 2.17
6947 7558 3.932545 TGCTATTTTTGGCGTGTGATT 57.067 38.095 0.00 0.00 0.00 2.57
6948 7559 3.932545 TTGCTATTTTTGGCGTGTGAT 57.067 38.095 0.00 0.00 0.00 3.06
6949 7560 3.254411 TGATTGCTATTTTTGGCGTGTGA 59.746 39.130 0.00 0.00 0.00 3.58
6950 7561 3.573598 TGATTGCTATTTTTGGCGTGTG 58.426 40.909 0.00 0.00 0.00 3.82
6951 7562 3.932545 TGATTGCTATTTTTGGCGTGT 57.067 38.095 0.00 0.00 0.00 4.49
6952 7563 6.884096 TTTATGATTGCTATTTTTGGCGTG 57.116 33.333 0.00 0.00 0.00 5.34
6953 7564 7.897575 TTTTTATGATTGCTATTTTTGGCGT 57.102 28.000 0.00 0.00 0.00 5.68
6990 7601 2.202987 CGGATGGTCAGCAGGAGC 60.203 66.667 1.13 1.13 44.35 4.70
6991 7602 1.142748 GTCGGATGGTCAGCAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
6992 7603 0.977627 ATGTCGGATGGTCAGCAGGA 60.978 55.000 0.00 0.00 0.00 3.86
6993 7604 0.107508 AATGTCGGATGGTCAGCAGG 60.108 55.000 0.00 0.00 0.00 4.85
6994 7605 2.602257 TAATGTCGGATGGTCAGCAG 57.398 50.000 0.00 0.00 0.00 4.24
6995 7606 3.118445 TGAATAATGTCGGATGGTCAGCA 60.118 43.478 0.00 0.00 0.00 4.41
6996 7607 3.466836 TGAATAATGTCGGATGGTCAGC 58.533 45.455 0.00 0.00 0.00 4.26
6997 7608 4.386954 CGATGAATAATGTCGGATGGTCAG 59.613 45.833 0.00 0.00 0.00 3.51
6998 7609 4.202212 ACGATGAATAATGTCGGATGGTCA 60.202 41.667 0.00 0.00 39.53 4.02
6999 7610 4.307432 ACGATGAATAATGTCGGATGGTC 58.693 43.478 0.00 0.00 39.53 4.02
7000 7611 4.336889 ACGATGAATAATGTCGGATGGT 57.663 40.909 0.00 0.00 39.53 3.55
7001 7612 5.236263 TGAAACGATGAATAATGTCGGATGG 59.764 40.000 0.00 0.00 39.53 3.51
7002 7613 6.285790 TGAAACGATGAATAATGTCGGATG 57.714 37.500 0.00 0.00 39.53 3.51
7003 7614 6.918892 TTGAAACGATGAATAATGTCGGAT 57.081 33.333 0.00 0.00 39.53 4.18
7004 7615 6.918892 ATTGAAACGATGAATAATGTCGGA 57.081 33.333 0.00 0.00 39.53 4.55
7005 7616 7.586300 GGTTATTGAAACGATGAATAATGTCGG 59.414 37.037 0.00 0.00 39.53 4.79
7006 7617 8.335356 AGGTTATTGAAACGATGAATAATGTCG 58.665 33.333 0.00 0.00 40.91 4.35
7007 7618 9.651718 GAGGTTATTGAAACGATGAATAATGTC 57.348 33.333 0.00 0.00 0.00 3.06
7008 7619 8.621286 GGAGGTTATTGAAACGATGAATAATGT 58.379 33.333 0.00 0.00 0.00 2.71
7009 7620 8.620416 TGGAGGTTATTGAAACGATGAATAATG 58.380 33.333 0.00 0.00 0.00 1.90
7010 7621 8.746052 TGGAGGTTATTGAAACGATGAATAAT 57.254 30.769 0.00 0.00 0.00 1.28
7011 7622 8.568676 TTGGAGGTTATTGAAACGATGAATAA 57.431 30.769 0.00 0.00 0.00 1.40
7012 7623 8.568676 TTTGGAGGTTATTGAAACGATGAATA 57.431 30.769 0.00 0.00 0.00 1.75
7013 7624 7.461182 TTTGGAGGTTATTGAAACGATGAAT 57.539 32.000 0.00 0.00 0.00 2.57
7014 7625 6.885952 TTTGGAGGTTATTGAAACGATGAA 57.114 33.333 0.00 0.00 0.00 2.57
7015 7626 7.461182 AATTTGGAGGTTATTGAAACGATGA 57.539 32.000 0.00 0.00 0.00 2.92
7016 7627 9.450807 GATAATTTGGAGGTTATTGAAACGATG 57.549 33.333 0.00 0.00 0.00 3.84
7017 7628 9.184523 TGATAATTTGGAGGTTATTGAAACGAT 57.815 29.630 0.00 0.00 0.00 3.73
7018 7629 8.568676 TGATAATTTGGAGGTTATTGAAACGA 57.431 30.769 0.00 0.00 0.00 3.85
7019 7630 8.673711 TCTGATAATTTGGAGGTTATTGAAACG 58.326 33.333 0.00 0.00 0.00 3.60
7039 7650 8.289618 GCAATCGCCTTGTTATTAATTCTGATA 58.710 33.333 0.00 0.00 37.18 2.15
7040 7651 7.141363 GCAATCGCCTTGTTATTAATTCTGAT 58.859 34.615 0.00 0.00 37.18 2.90
7041 7652 6.094742 TGCAATCGCCTTGTTATTAATTCTGA 59.905 34.615 0.00 0.00 37.18 3.27
7042 7653 6.264832 TGCAATCGCCTTGTTATTAATTCTG 58.735 36.000 0.00 0.00 37.18 3.02
7043 7654 6.449635 TGCAATCGCCTTGTTATTAATTCT 57.550 33.333 0.00 0.00 37.18 2.40
7044 7655 6.019881 GGTTGCAATCGCCTTGTTATTAATTC 60.020 38.462 0.59 0.00 37.18 2.17
7045 7656 5.810074 GGTTGCAATCGCCTTGTTATTAATT 59.190 36.000 0.59 0.00 37.18 1.40
7046 7657 5.348164 GGTTGCAATCGCCTTGTTATTAAT 58.652 37.500 0.59 0.00 37.18 1.40
7047 7658 4.381079 GGGTTGCAATCGCCTTGTTATTAA 60.381 41.667 0.59 0.00 37.18 1.40
7048 7659 3.129638 GGGTTGCAATCGCCTTGTTATTA 59.870 43.478 0.59 0.00 37.18 0.98
7049 7660 2.094234 GGGTTGCAATCGCCTTGTTATT 60.094 45.455 0.59 0.00 37.18 1.40
7050 7661 1.476488 GGGTTGCAATCGCCTTGTTAT 59.524 47.619 0.59 0.00 37.18 1.89
7051 7662 0.885196 GGGTTGCAATCGCCTTGTTA 59.115 50.000 0.59 0.00 37.18 2.41
7052 7663 1.665442 GGGTTGCAATCGCCTTGTT 59.335 52.632 0.59 0.00 37.18 2.83
7053 7664 2.625823 CGGGTTGCAATCGCCTTGT 61.626 57.895 0.59 0.00 37.18 3.16
7054 7665 2.179018 CGGGTTGCAATCGCCTTG 59.821 61.111 0.59 0.00 37.32 3.61
7055 7666 3.747976 GCGGGTTGCAATCGCCTT 61.748 61.111 28.09 0.00 45.45 4.35
7064 7675 2.653766 CACAAACGTGCGGGTTGC 60.654 61.111 5.36 0.00 46.70 4.17
7065 7676 1.010125 CTCACAAACGTGCGGGTTG 60.010 57.895 4.01 4.01 34.20 3.77
7066 7677 2.830285 GCTCACAAACGTGCGGGTT 61.830 57.895 0.00 0.00 34.20 4.11
7067 7678 3.276846 GCTCACAAACGTGCGGGT 61.277 61.111 0.00 0.00 34.20 5.28
7068 7679 4.368808 CGCTCACAAACGTGCGGG 62.369 66.667 7.72 0.00 43.21 6.13
7071 7682 1.793613 GATGCGCTCACAAACGTGC 60.794 57.895 9.73 0.00 34.20 5.34
7072 7683 0.451628 CAGATGCGCTCACAAACGTG 60.452 55.000 9.73 0.00 35.60 4.49
7073 7684 0.599991 TCAGATGCGCTCACAAACGT 60.600 50.000 9.73 0.00 0.00 3.99
7074 7685 0.512518 TTCAGATGCGCTCACAAACG 59.487 50.000 9.73 0.00 0.00 3.60
7075 7686 1.532868 ACTTCAGATGCGCTCACAAAC 59.467 47.619 9.73 0.00 0.00 2.93
7076 7687 1.882912 ACTTCAGATGCGCTCACAAA 58.117 45.000 9.73 0.00 0.00 2.83
7077 7688 1.882912 AACTTCAGATGCGCTCACAA 58.117 45.000 9.73 0.27 0.00 3.33
7078 7689 2.610433 CTAACTTCAGATGCGCTCACA 58.390 47.619 9.73 0.00 0.00 3.58
7079 7690 1.325943 GCTAACTTCAGATGCGCTCAC 59.674 52.381 9.73 0.00 0.00 3.51
7080 7691 1.205655 AGCTAACTTCAGATGCGCTCA 59.794 47.619 9.73 0.00 0.00 4.26
7081 7692 1.933247 AGCTAACTTCAGATGCGCTC 58.067 50.000 9.73 3.60 0.00 5.03
7082 7693 2.393271 AAGCTAACTTCAGATGCGCT 57.607 45.000 9.73 0.00 0.00 5.92
7103 7714 3.699538 AGACAGAAAAGGGGAAACACAAC 59.300 43.478 0.00 0.00 34.58 3.32
7148 7759 2.149578 GACTGCTGTGCTGAGTGAAAT 58.850 47.619 0.00 0.00 0.00 2.17
7163 7774 2.603560 AGAGCGCTAAATTAACGACTGC 59.396 45.455 11.50 0.00 0.00 4.40
7201 7812 5.885230 AAGACACCACACACATATCATTG 57.115 39.130 0.00 0.00 0.00 2.82
7203 7814 4.156556 GCAAAGACACCACACACATATCAT 59.843 41.667 0.00 0.00 0.00 2.45
7204 7815 3.501828 GCAAAGACACCACACACATATCA 59.498 43.478 0.00 0.00 0.00 2.15
7205 7816 3.501828 TGCAAAGACACCACACACATATC 59.498 43.478 0.00 0.00 0.00 1.63
7208 7819 1.761449 TGCAAAGACACCACACACAT 58.239 45.000 0.00 0.00 0.00 3.21
7270 7888 4.449068 AGTGCACAGTTCGATACTTTTCTG 59.551 41.667 21.04 0.00 33.85 3.02
7271 7889 4.632153 AGTGCACAGTTCGATACTTTTCT 58.368 39.130 21.04 0.00 33.85 2.52
7282 7900 4.512944 TCTGAATCAGAAAGTGCACAGTTC 59.487 41.667 21.04 20.46 37.57 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.