Multiple sequence alignment - TraesCS3D01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G292100 chr3D 100.000 7393 0 0 1 7393 401900417 401893025 0.000000e+00 13653.0
1 TraesCS3D01G292100 chr3D 84.444 135 20 1 3469 3603 583615650 583615783 1.670000e-26 132.0
2 TraesCS3D01G292100 chr3D 98.039 51 1 0 7011 7061 401893358 401893308 1.020000e-13 89.8
3 TraesCS3D01G292100 chr3D 98.039 51 1 0 7060 7110 401893407 401893357 1.020000e-13 89.8
4 TraesCS3D01G292100 chr3B 94.196 1878 70 11 2730 4598 527658969 527657122 0.000000e+00 2828.0
5 TraesCS3D01G292100 chr3B 91.860 1720 55 31 1 1697 527662240 527660583 0.000000e+00 2322.0
6 TraesCS3D01G292100 chr3B 93.854 1497 67 5 5239 6712 527655641 527654147 0.000000e+00 2231.0
7 TraesCS3D01G292100 chr3B 92.625 678 39 4 1970 2636 527659645 527658968 0.000000e+00 965.0
8 TraesCS3D01G292100 chr3B 92.593 270 11 2 4691 4951 527656709 527656440 5.410000e-101 379.0
9 TraesCS3D01G292100 chr3B 90.000 220 10 5 6696 6910 527650842 527650630 2.630000e-69 274.0
10 TraesCS3D01G292100 chr3B 95.270 148 6 1 5094 5240 527655875 527655728 4.460000e-57 233.0
11 TraesCS3D01G292100 chr3B 83.258 221 19 6 7191 7393 527380718 527380498 3.520000e-43 187.0
12 TraesCS3D01G292100 chr3B 92.308 130 7 2 4950 5077 527656086 527655958 1.640000e-41 182.0
13 TraesCS3D01G292100 chr3B 97.170 106 2 1 2627 2732 766128283 766128179 2.120000e-40 178.0
14 TraesCS3D01G292100 chr3B 95.455 110 4 1 2633 2741 725974810 725974701 2.740000e-39 174.0
15 TraesCS3D01G292100 chr3B 86.624 157 11 3 1728 1876 527660281 527660127 1.650000e-36 165.0
16 TraesCS3D01G292100 chr3B 89.474 114 10 1 4482 4593 4221382 4221495 7.730000e-30 143.0
17 TraesCS3D01G292100 chr3B 89.474 114 10 1 4482 4593 5076826 5076939 7.730000e-30 143.0
18 TraesCS3D01G292100 chr3B 87.500 120 15 0 4481 4600 603212363 603212482 1.000000e-28 139.0
19 TraesCS3D01G292100 chr3A 93.179 1818 73 8 5239 7054 522272548 522270780 0.000000e+00 2623.0
20 TraesCS3D01G292100 chr3A 88.361 2148 94 52 582 2636 522277583 522275499 0.000000e+00 2438.0
21 TraesCS3D01G292100 chr3A 96.787 1027 22 5 2730 3749 522275500 522274478 0.000000e+00 1703.0
22 TraesCS3D01G292100 chr3A 92.515 855 31 14 3748 4598 522274439 522273614 0.000000e+00 1194.0
23 TraesCS3D01G292100 chr3A 89.421 605 46 12 4650 5240 522273242 522272642 0.000000e+00 747.0
24 TraesCS3D01G292100 chr3A 89.048 630 21 11 1 586 522278512 522277887 0.000000e+00 737.0
25 TraesCS3D01G292100 chr3A 94.286 280 16 0 7114 7393 522267769 522267490 5.300000e-116 429.0
26 TraesCS3D01G292100 chr3A 94.340 106 6 0 7095 7200 522267874 522267769 5.940000e-36 163.0
27 TraesCS3D01G292100 chr3A 97.727 44 1 0 7060 7103 522270823 522270780 7.950000e-10 76.8
28 TraesCS3D01G292100 chr2A 84.000 800 98 20 3699 4491 379297070 379296294 0.000000e+00 741.0
29 TraesCS3D01G292100 chr2A 80.941 404 49 10 2739 3126 379297470 379297079 2.020000e-75 294.0
30 TraesCS3D01G292100 chr2A 86.047 172 21 3 5247 5418 84595311 84595479 1.640000e-41 182.0
31 TraesCS3D01G292100 chr2A 84.848 165 24 1 5255 5419 429391614 429391777 1.650000e-36 165.0
32 TraesCS3D01G292100 chr6A 83.895 801 101 21 3699 4491 3601911 3601131 0.000000e+00 739.0
33 TraesCS3D01G292100 chr6A 88.360 378 35 5 5106 5477 3601135 3600761 5.260000e-121 446.0
34 TraesCS3D01G292100 chr6A 83.186 339 38 8 2795 3126 3602246 3601920 7.260000e-75 292.0
35 TraesCS3D01G292100 chr6A 84.404 109 12 5 4983 5090 77895297 77895401 1.310000e-17 102.0
36 TraesCS3D01G292100 chr1D 83.519 807 101 25 3699 4491 458305687 458304899 0.000000e+00 725.0
37 TraesCS3D01G292100 chr1D 87.863 379 36 6 5106 5477 458304903 458304528 3.170000e-118 436.0
38 TraesCS3D01G292100 chr1D 84.643 280 38 4 3179 3454 432623613 432623335 2.630000e-69 274.0
39 TraesCS3D01G292100 chr1D 85.714 175 22 3 5245 5419 478269815 478269986 1.640000e-41 182.0
40 TraesCS3D01G292100 chr1D 79.263 217 23 13 1159 1355 427148976 427149190 1.670000e-26 132.0
41 TraesCS3D01G292100 chr1D 86.747 83 10 1 3469 3551 135679077 135679158 2.840000e-14 91.6
42 TraesCS3D01G292100 chr1D 95.652 46 2 0 4596 4641 436192622 436192667 2.860000e-09 75.0
43 TraesCS3D01G292100 chr1D 92.500 40 3 0 4971 5010 298494141 298494102 2.880000e-04 58.4
44 TraesCS3D01G292100 chr7D 86.769 325 40 3 3699 4022 1523302 1522980 7.050000e-95 359.0
45 TraesCS3D01G292100 chr7D 97.115 104 3 0 2628 2731 269373324 269373427 7.620000e-40 176.0
46 TraesCS3D01G292100 chr7D 91.304 46 4 0 4596 4641 401121912 401121957 6.190000e-06 63.9
47 TraesCS3D01G292100 chr2D 79.778 450 55 17 3071 3505 631291289 631291717 2.020000e-75 294.0
48 TraesCS3D01G292100 chr2D 90.090 222 20 2 3964 4183 617550834 617550613 3.380000e-73 287.0
49 TraesCS3D01G292100 chr2D 91.270 126 6 4 2612 2732 574067130 574067005 4.590000e-37 167.0
50 TraesCS3D01G292100 chr2D 82.609 138 22 2 3474 3610 644244190 644244054 3.620000e-23 121.0
51 TraesCS3D01G292100 chr2D 95.652 46 2 0 4596 4641 500366569 500366524 2.860000e-09 75.0
52 TraesCS3D01G292100 chr2B 97.196 107 2 1 2632 2737 584129398 584129504 5.890000e-41 180.0
53 TraesCS3D01G292100 chr2B 98.039 102 2 0 2632 2733 290799004 290798903 2.120000e-40 178.0
54 TraesCS3D01G292100 chr2B 94.545 110 6 0 2628 2737 425527649 425527758 3.550000e-38 171.0
55 TraesCS3D01G292100 chr2B 97.826 46 1 0 4596 4641 361575922 361575877 6.150000e-11 80.5
56 TraesCS3D01G292100 chr5B 95.413 109 4 1 2627 2734 91884538 91884430 9.860000e-39 172.0
57 TraesCS3D01G292100 chr5B 90.000 130 13 0 3472 3601 658477562 658477433 1.280000e-37 169.0
58 TraesCS3D01G292100 chr5B 93.519 108 6 1 4492 4599 163266180 163266286 7.680000e-35 159.0
59 TraesCS3D01G292100 chr4D 93.220 118 6 1 2627 2744 54799344 54799459 9.860000e-39 172.0
60 TraesCS3D01G292100 chr4D 90.909 44 4 0 4970 5013 308394125 308394082 8.010000e-05 60.2
61 TraesCS3D01G292100 chr4D 90.909 44 4 0 4970 5013 308394378 308394335 8.010000e-05 60.2
62 TraesCS3D01G292100 chr1B 94.495 109 6 0 4491 4599 390427061 390427169 1.280000e-37 169.0
63 TraesCS3D01G292100 chr1B 81.776 214 23 11 1156 1355 577606966 577607177 1.650000e-36 165.0
64 TraesCS3D01G292100 chr1B 89.831 59 5 1 4974 5032 6550459 6550516 2.860000e-09 75.0
65 TraesCS3D01G292100 chr5D 90.244 123 9 3 4970 5089 181614097 181614219 2.760000e-34 158.0
66 TraesCS3D01G292100 chr5D 91.667 108 8 1 4492 4599 181613940 181614046 1.660000e-31 148.0
67 TraesCS3D01G292100 chr5D 75.000 372 60 15 3251 3603 260428805 260428448 2.780000e-29 141.0
68 TraesCS3D01G292100 chr5D 90.000 50 4 1 4601 4650 448333757 448333805 6.190000e-06 63.9
69 TraesCS3D01G292100 chr7A 83.060 183 20 9 2336 2510 26472730 26472551 9.930000e-34 156.0
70 TraesCS3D01G292100 chr7A 82.955 176 25 4 5247 5422 26472210 26472040 3.570000e-33 154.0
71 TraesCS3D01G292100 chr5A 92.661 109 6 2 4492 4599 170839628 170839735 9.930000e-34 156.0
72 TraesCS3D01G292100 chr5A 91.489 47 4 0 4601 4647 361711248 361711202 1.720000e-06 65.8
73 TraesCS3D01G292100 chr7B 89.831 118 12 0 3905 4022 17251450 17251333 1.280000e-32 152.0
74 TraesCS3D01G292100 chr7B 95.745 47 2 0 4595 4641 556739179 556739225 7.950000e-10 76.8
75 TraesCS3D01G292100 chr1A 87.500 136 11 6 1156 1287 522229935 522230068 1.280000e-32 152.0
76 TraesCS3D01G292100 chr1A 90.909 110 10 0 4491 4600 361189699 361189808 1.660000e-31 148.0
77 TraesCS3D01G292100 chr1A 84.286 140 20 2 3472 3610 561053379 561053241 1.290000e-27 135.0
78 TraesCS3D01G292100 chr1A 86.076 79 11 0 4970 5048 59250527 59250449 1.320000e-12 86.1
79 TraesCS3D01G292100 chr4B 86.508 126 13 4 4476 4600 554561766 554561644 1.290000e-27 135.0
80 TraesCS3D01G292100 chr4B 85.124 121 15 3 5247 5367 546670780 546670897 3.620000e-23 121.0
81 TraesCS3D01G292100 chr4A 84.848 132 19 1 3472 3603 658138020 658137890 1.670000e-26 132.0
82 TraesCS3D01G292100 chr4A 93.478 46 2 1 4590 4635 5465710 5465666 4.790000e-07 67.6
83 TraesCS3D01G292100 chr4A 93.478 46 2 1 4590 4635 5465862 5465818 4.790000e-07 67.6
84 TraesCS3D01G292100 chr6D 91.837 49 4 0 7085 7133 266323474 266323426 1.330000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G292100 chr3D 401893025 401900417 7392 True 13653.000000 13653 100.000000 1 7393 1 chr3D.!!$R1 7392
1 TraesCS3D01G292100 chr3B 527650630 527662240 11610 True 1064.333333 2828 92.147778 1 6910 9 chr3B.!!$R4 6909
2 TraesCS3D01G292100 chr3A 522267490 522278512 11022 True 1123.422222 2623 92.851556 1 7393 9 chr3A.!!$R1 7392
3 TraesCS3D01G292100 chr2A 379296294 379297470 1176 True 517.500000 741 82.470500 2739 4491 2 chr2A.!!$R1 1752
4 TraesCS3D01G292100 chr6A 3600761 3602246 1485 True 492.333333 739 85.147000 2795 5477 3 chr6A.!!$R1 2682
5 TraesCS3D01G292100 chr1D 458304528 458305687 1159 True 580.500000 725 85.691000 3699 5477 2 chr1D.!!$R3 1778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.527817 ACTGCGTGCTTATCGGCTAC 60.528 55.000 0.00 0.00 0.00 3.58 F
1418 1823 0.673022 CTCTTCCTGTGCTGGCTGTC 60.673 60.000 0.00 0.00 0.00 3.51 F
1435 1840 0.737715 GTCGTGCTGATCTGGTGACC 60.738 60.000 0.00 0.00 0.00 4.02 F
2067 3163 0.995024 AGAAGAACATGGGAGGTGGG 59.005 55.000 0.00 0.00 0.00 4.61 F
2648 3758 1.133231 ACCTAATACTCCCTCCGTCCC 60.133 57.143 0.00 0.00 0.00 4.46 F
4442 5624 0.407528 TGCCAATCCACCTTGCCTTA 59.592 50.000 0.00 0.00 0.00 2.69 F
6011 8097 0.034767 TTTCATCTGCAGCTCAGGGG 60.035 55.000 9.47 6.19 43.06 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1932 0.180642 ACTGGATGGAGCAGCATCTG 59.819 55.0 0.00 0.00 34.12 2.90 R
2281 3377 0.179129 GGCGCAATCCAAACCATGAG 60.179 55.0 10.83 0.00 0.00 2.90 R
3164 4292 0.555769 ACCTGGAAGCAAAAGGACCA 59.444 50.0 0.00 0.00 34.97 4.02 R
3165 4293 1.248486 GACCTGGAAGCAAAAGGACC 58.752 55.0 0.00 0.00 34.97 4.46 R
4504 5688 1.093972 TATCCCGTTGCAATGCACAG 58.906 50.0 7.72 4.64 38.71 3.66 R
6212 8319 0.598065 ACCCGAAAAGCATGCAACTC 59.402 50.0 21.98 11.37 0.00 3.01 R
7033 12470 0.110599 TTGCCAAATAACACGACGCG 60.111 50.0 3.53 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.811266 CACTGCGTGCTTATCGGCT 60.811 57.895 0.00 0.00 0.00 5.52
26 27 0.527817 ACTGCGTGCTTATCGGCTAC 60.528 55.000 0.00 0.00 0.00 3.58
71 78 1.520342 GCCACTCAGTCAGATCGGC 60.520 63.158 0.00 0.00 36.61 5.54
266 273 2.577593 GTCCTCCTACGCCACCAC 59.422 66.667 0.00 0.00 0.00 4.16
325 336 3.723772 TGTGTCCATCCACAACCAG 57.276 52.632 0.00 0.00 42.13 4.00
328 339 1.072331 GTGTCCATCCACAACCAGACT 59.928 52.381 0.00 0.00 35.38 3.24
329 340 1.774254 TGTCCATCCACAACCAGACTT 59.226 47.619 0.00 0.00 0.00 3.01
403 416 1.409790 TCAGAACGAAGGTTGAACGGA 59.590 47.619 0.00 0.00 36.24 4.69
503 542 4.778143 GGGTACGGTGGCAGGCAG 62.778 72.222 0.00 0.00 0.00 4.85
504 543 4.778143 GGTACGGTGGCAGGCAGG 62.778 72.222 0.00 0.00 0.00 4.85
670 1037 2.388232 CGCCGTGCCACTAAAGTCC 61.388 63.158 0.00 0.00 0.00 3.85
918 1303 2.014033 GAGGAGGAGATCGAGGGGGT 62.014 65.000 0.00 0.00 0.00 4.95
922 1307 2.801631 GGAGATCGAGGGGGTGCAG 61.802 68.421 0.00 0.00 0.00 4.41
1012 1397 1.543690 GCATTAATGGGGCCCTCCT 59.456 57.895 25.93 10.53 35.33 3.69
1418 1823 0.673022 CTCTTCCTGTGCTGGCTGTC 60.673 60.000 0.00 0.00 0.00 3.51
1435 1840 0.737715 GTCGTGCTGATCTGGTGACC 60.738 60.000 0.00 0.00 0.00 4.02
1436 1841 1.807165 CGTGCTGATCTGGTGACCG 60.807 63.158 0.00 0.00 0.00 4.79
1437 1842 1.448540 GTGCTGATCTGGTGACCGG 60.449 63.158 3.42 3.42 0.00 5.28
1438 1843 2.187946 GCTGATCTGGTGACCGGG 59.812 66.667 11.16 0.00 0.00 5.73
1439 1844 2.903357 CTGATCTGGTGACCGGGG 59.097 66.667 11.16 0.00 0.00 5.73
1440 1845 1.990060 CTGATCTGGTGACCGGGGT 60.990 63.158 11.16 0.00 0.00 4.95
1441 1846 1.961180 CTGATCTGGTGACCGGGGTC 61.961 65.000 11.16 10.95 44.77 4.46
1527 1932 1.141234 CGGAGGGCGAGGTAAGAAC 59.859 63.158 0.00 0.00 0.00 3.01
1568 1973 3.253921 TCACTTTGCTGGATTCATGTGTG 59.746 43.478 0.00 0.00 0.00 3.82
1569 1974 3.005050 CACTTTGCTGGATTCATGTGTGT 59.995 43.478 0.00 0.00 0.00 3.72
1570 1975 3.005050 ACTTTGCTGGATTCATGTGTGTG 59.995 43.478 0.00 0.00 0.00 3.82
1571 1976 2.275134 TGCTGGATTCATGTGTGTGT 57.725 45.000 0.00 0.00 0.00 3.72
1639 2045 2.193536 GTGGCTGCTTCGGTTGGTT 61.194 57.895 0.00 0.00 0.00 3.67
1650 2056 2.724454 TCGGTTGGTTTTCAGGTTTCA 58.276 42.857 0.00 0.00 0.00 2.69
1653 2059 2.459934 GTTGGTTTTCAGGTTTCAGCG 58.540 47.619 0.00 0.00 0.00 5.18
1706 2112 7.753309 TGCCTACATTTTGTTTACTACATGT 57.247 32.000 2.69 2.69 36.44 3.21
1707 2113 7.589395 TGCCTACATTTTGTTTACTACATGTG 58.411 34.615 9.11 0.93 36.44 3.21
1709 2115 7.749126 GCCTACATTTTGTTTACTACATGTGTC 59.251 37.037 9.11 0.00 36.44 3.67
1723 2148 7.422399 ACTACATGTGTCGTTTTTAGCAATTT 58.578 30.769 9.11 0.00 0.00 1.82
1726 2151 6.636850 ACATGTGTCGTTTTTAGCAATTTCTC 59.363 34.615 0.00 0.00 0.00 2.87
1765 2453 4.260375 GGAGTACTTCATTTACTGCATGCG 60.260 45.833 14.09 10.50 37.71 4.73
1773 2461 5.115480 TCATTTACTGCATGCGTCTGAATA 58.885 37.500 14.09 0.00 0.00 1.75
1774 2462 5.584251 TCATTTACTGCATGCGTCTGAATAA 59.416 36.000 14.09 1.74 0.00 1.40
1782 2470 2.343101 TGCGTCTGAATAAACGGAAGG 58.657 47.619 0.00 0.00 36.27 3.46
1787 2475 3.374367 GTCTGAATAAACGGAAGGCCTTC 59.626 47.826 33.67 33.67 38.80 3.46
1802 2490 1.664151 GCCTTCCGTAGTACAATGTGC 59.336 52.381 0.00 0.00 0.00 4.57
1845 2533 8.136563 AGGCCTATTAAGCTAACTAGGAATAC 57.863 38.462 1.29 5.98 33.93 1.89
1914 2628 6.385649 GTCAAATGACAAACTTCTGGGTAA 57.614 37.500 8.63 0.00 44.18 2.85
1915 2629 6.981722 GTCAAATGACAAACTTCTGGGTAAT 58.018 36.000 8.63 0.00 44.18 1.89
1916 2630 7.084486 GTCAAATGACAAACTTCTGGGTAATC 58.916 38.462 8.63 0.00 44.18 1.75
1917 2631 7.004086 TCAAATGACAAACTTCTGGGTAATCT 58.996 34.615 0.00 0.00 0.00 2.40
1918 2632 6.824305 AATGACAAACTTCTGGGTAATCTG 57.176 37.500 0.00 0.00 0.00 2.90
1919 2633 4.651778 TGACAAACTTCTGGGTAATCTGG 58.348 43.478 0.00 0.00 0.00 3.86
1920 2634 4.010349 GACAAACTTCTGGGTAATCTGGG 58.990 47.826 0.00 0.00 0.00 4.45
1922 2636 4.141018 ACAAACTTCTGGGTAATCTGGGTT 60.141 41.667 0.00 0.00 0.00 4.11
1924 2638 4.741928 ACTTCTGGGTAATCTGGGTTTT 57.258 40.909 0.00 0.00 0.00 2.43
1925 2639 4.407365 ACTTCTGGGTAATCTGGGTTTTG 58.593 43.478 0.00 0.00 0.00 2.44
1926 2640 2.802719 TCTGGGTAATCTGGGTTTTGC 58.197 47.619 0.00 0.00 0.00 3.68
1927 2641 2.378547 TCTGGGTAATCTGGGTTTTGCT 59.621 45.455 0.00 0.00 0.00 3.91
1928 2642 2.755103 CTGGGTAATCTGGGTTTTGCTC 59.245 50.000 0.00 0.00 0.00 4.26
1929 2643 1.743394 GGGTAATCTGGGTTTTGCTCG 59.257 52.381 0.00 0.00 0.00 5.03
1930 2644 2.433436 GGTAATCTGGGTTTTGCTCGT 58.567 47.619 0.00 0.00 0.00 4.18
1931 2645 2.817844 GGTAATCTGGGTTTTGCTCGTT 59.182 45.455 0.00 0.00 0.00 3.85
1932 2646 3.119955 GGTAATCTGGGTTTTGCTCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
1933 2647 2.568623 ATCTGGGTTTTGCTCGTTCT 57.431 45.000 0.00 0.00 0.00 3.01
1934 2648 1.878953 TCTGGGTTTTGCTCGTTCTC 58.121 50.000 0.00 0.00 0.00 2.87
1935 2649 1.416401 TCTGGGTTTTGCTCGTTCTCT 59.584 47.619 0.00 0.00 0.00 3.10
1936 2650 2.158813 TCTGGGTTTTGCTCGTTCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
1937 2651 2.218603 TGGGTTTTGCTCGTTCTCTTC 58.781 47.619 0.00 0.00 0.00 2.87
1959 2673 9.494055 TCTTCTAGAAAGGAGAGAAATGGAATA 57.506 33.333 6.63 0.00 31.92 1.75
1965 3061 7.501892 AGAAAGGAGAGAAATGGAATATTCTGC 59.498 37.037 14.95 0.38 36.08 4.26
1968 3064 6.771749 AGGAGAGAAATGGAATATTCTGCTTG 59.228 38.462 14.95 0.00 36.08 4.01
1973 3069 8.302515 AGAAATGGAATATTCTGCTTGTGAAT 57.697 30.769 14.95 0.00 34.70 2.57
1976 3072 9.729281 AAATGGAATATTCTGCTTGTGAATTTT 57.271 25.926 14.95 0.00 35.90 1.82
1983 3079 9.846248 ATATTCTGCTTGTGAATTTTAACTGTC 57.154 29.630 0.00 0.00 35.90 3.51
2015 3111 1.065564 TGGACATGTCGGATGCATCAA 60.066 47.619 27.25 12.60 0.00 2.57
2025 3121 1.135024 GGATGCATCAAAACCGCACAT 60.135 47.619 27.25 0.00 38.73 3.21
2067 3163 0.995024 AGAAGAACATGGGAGGTGGG 59.005 55.000 0.00 0.00 0.00 4.61
2228 3324 1.142870 CTGTTTCCCTCCACTGGTGAA 59.857 52.381 1.93 0.00 0.00 3.18
2281 3377 5.047802 TGGCTCTTGAAATGATTCCTTGTTC 60.048 40.000 0.00 0.00 34.49 3.18
2292 3388 4.523943 TGATTCCTTGTTCTCATGGTTTGG 59.476 41.667 0.00 0.00 39.16 3.28
2438 3536 1.669779 GGTGAGATCAGTGCTGAATGC 59.330 52.381 5.95 0.00 43.58 3.56
2593 3700 4.680440 GCAAAGAAAGCCCACTGAAGAAAA 60.680 41.667 0.00 0.00 0.00 2.29
2600 3710 2.810852 GCCCACTGAAGAAAACTCTCTG 59.189 50.000 0.00 0.00 0.00 3.35
2606 3716 4.141846 ACTGAAGAAAACTCTCTGACTGCA 60.142 41.667 0.00 0.00 0.00 4.41
2636 3746 8.773404 AGTCTTCAAACACACATACCTAATAC 57.227 34.615 0.00 0.00 0.00 1.89
2637 3747 8.594550 AGTCTTCAAACACACATACCTAATACT 58.405 33.333 0.00 0.00 0.00 2.12
2638 3748 8.870879 GTCTTCAAACACACATACCTAATACTC 58.129 37.037 0.00 0.00 0.00 2.59
2639 3749 8.038944 TCTTCAAACACACATACCTAATACTCC 58.961 37.037 0.00 0.00 0.00 3.85
2640 3750 6.646267 TCAAACACACATACCTAATACTCCC 58.354 40.000 0.00 0.00 0.00 4.30
2641 3751 6.442564 TCAAACACACATACCTAATACTCCCT 59.557 38.462 0.00 0.00 0.00 4.20
2642 3752 6.481434 AACACACATACCTAATACTCCCTC 57.519 41.667 0.00 0.00 0.00 4.30
2643 3753 4.900054 ACACACATACCTAATACTCCCTCC 59.100 45.833 0.00 0.00 0.00 4.30
2644 3754 4.022242 CACACATACCTAATACTCCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
2645 3755 4.150359 CACATACCTAATACTCCCTCCGT 58.850 47.826 0.00 0.00 0.00 4.69
2646 3756 4.217983 CACATACCTAATACTCCCTCCGTC 59.782 50.000 0.00 0.00 0.00 4.79
2647 3757 2.378378 ACCTAATACTCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
2648 3758 1.133231 ACCTAATACTCCCTCCGTCCC 60.133 57.143 0.00 0.00 0.00 4.46
2649 3759 1.133262 CCTAATACTCCCTCCGTCCCA 60.133 57.143 0.00 0.00 0.00 4.37
2650 3760 2.674420 CTAATACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
2651 3761 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2652 3762 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2653 3763 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2654 3764 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2655 3765 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2656 3766 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2657 3767 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2658 3768 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2659 3769 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2660 3770 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2661 3771 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2662 3772 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2663 3773 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2664 3774 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2665 3775 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2666 3776 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2667 3777 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2668 3778 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2669 3779 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2670 3780 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2671 3781 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2672 3782 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2673 3783 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2674 3784 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
2675 3785 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2676 3786 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2677 3787 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2678 3788 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2679 3789 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2680 3790 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2681 3791 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2682 3792 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
2695 3805 6.969828 ACAAATTTGTACTAGAGCTAGTGC 57.030 37.500 22.10 16.91 45.25 4.40
2703 3813 4.873746 ACTAGAGCTAGTGCAAAGTTGA 57.126 40.909 9.26 0.00 44.11 3.18
2704 3814 4.815269 ACTAGAGCTAGTGCAAAGTTGAG 58.185 43.478 9.26 0.00 44.11 3.02
2705 3815 4.524714 ACTAGAGCTAGTGCAAAGTTGAGA 59.475 41.667 9.26 0.00 44.11 3.27
2706 3816 3.658709 AGAGCTAGTGCAAAGTTGAGAC 58.341 45.455 0.00 0.00 42.74 3.36
2707 3817 3.070159 AGAGCTAGTGCAAAGTTGAGACA 59.930 43.478 0.00 0.00 42.74 3.41
2708 3818 3.134458 AGCTAGTGCAAAGTTGAGACAC 58.866 45.455 0.00 0.00 42.74 3.67
2709 3819 3.134458 GCTAGTGCAAAGTTGAGACACT 58.866 45.455 0.00 0.00 43.60 3.55
2710 3820 3.561725 GCTAGTGCAAAGTTGAGACACTT 59.438 43.478 7.72 0.00 41.56 3.16
2711 3821 4.750098 GCTAGTGCAAAGTTGAGACACTTA 59.250 41.667 7.72 0.00 41.56 2.24
2712 3822 5.409826 GCTAGTGCAAAGTTGAGACACTTAT 59.590 40.000 7.72 0.00 41.56 1.73
2713 3823 6.073003 GCTAGTGCAAAGTTGAGACACTTATT 60.073 38.462 7.72 0.00 41.56 1.40
2714 3824 6.699575 AGTGCAAAGTTGAGACACTTATTT 57.300 33.333 0.00 0.00 38.38 1.40
2715 3825 7.100458 AGTGCAAAGTTGAGACACTTATTTT 57.900 32.000 0.00 0.00 38.38 1.82
2716 3826 6.974622 AGTGCAAAGTTGAGACACTTATTTTG 59.025 34.615 0.00 0.00 38.38 2.44
2717 3827 6.198966 GTGCAAAGTTGAGACACTTATTTTGG 59.801 38.462 0.00 0.00 35.87 3.28
2718 3828 5.691754 GCAAAGTTGAGACACTTATTTTGGG 59.308 40.000 0.00 0.00 35.87 4.12
2719 3829 6.460953 GCAAAGTTGAGACACTTATTTTGGGA 60.461 38.462 0.00 0.00 35.87 4.37
2720 3830 7.661040 CAAAGTTGAGACACTTATTTTGGGAT 58.339 34.615 0.00 0.00 35.87 3.85
2721 3831 6.824305 AGTTGAGACACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
2722 3832 5.711976 AGTTGAGACACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
2723 3833 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
2724 3834 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
2725 3835 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
2726 3836 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
2727 3837 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
2728 3838 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
2729 3839 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
2730 3840 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
2737 3847 5.582950 TGGGATGGAGGGAGTATAATTTG 57.417 43.478 0.00 0.00 0.00 2.32
2962 4081 7.443879 CAGGTTTATTTACACTGCCCAAAATTT 59.556 33.333 0.00 0.00 0.00 1.82
2963 4082 8.652290 AGGTTTATTTACACTGCCCAAAATTTA 58.348 29.630 0.00 0.00 0.00 1.40
2964 4083 8.714179 GGTTTATTTACACTGCCCAAAATTTAC 58.286 33.333 0.00 0.00 0.00 2.01
3121 4248 9.740239 TTCTGATTTTGAAGCAAATATATCAGC 57.260 29.630 18.86 2.07 41.27 4.26
3150 4277 4.617253 TGTTCTAGCAAGGTACATGTGT 57.383 40.909 9.11 0.00 0.00 3.72
3163 4291 7.994425 AGGTACATGTGTGATGTTATGAAAA 57.006 32.000 9.11 0.00 33.76 2.29
3164 4292 8.579850 AGGTACATGTGTGATGTTATGAAAAT 57.420 30.769 9.11 0.00 33.76 1.82
3165 4293 8.461222 AGGTACATGTGTGATGTTATGAAAATG 58.539 33.333 9.11 0.00 33.76 2.32
3166 4294 7.701924 GGTACATGTGTGATGTTATGAAAATGG 59.298 37.037 9.11 0.00 33.76 3.16
3167 4295 7.230849 ACATGTGTGATGTTATGAAAATGGT 57.769 32.000 0.00 0.00 0.00 3.55
3169 4297 6.266168 TGTGTGATGTTATGAAAATGGTCC 57.734 37.500 0.00 0.00 0.00 4.46
3170 4298 6.009589 TGTGTGATGTTATGAAAATGGTCCT 58.990 36.000 0.00 0.00 0.00 3.85
3808 4979 6.861065 ATGTGTAACTACAAAAGGACAGTG 57.139 37.500 0.00 0.00 38.04 3.66
3935 5108 4.136796 AGCTGCTGCATCCGAATTTATTA 58.863 39.130 18.42 0.00 42.74 0.98
4042 5215 5.783360 TGTTAATGAGAGGTCTGTCCCTTTA 59.217 40.000 0.00 0.00 34.03 1.85
4244 5425 3.186909 TCAGAACGCCATTATCTTCGTG 58.813 45.455 0.00 0.00 35.19 4.35
4271 5452 8.518430 TGCCTTGCAGTATTTTAGATAATTGA 57.482 30.769 0.00 0.00 33.32 2.57
4342 5524 6.594788 AAATGCTCTAATGAGGCTTGAAAA 57.405 33.333 0.00 0.00 40.53 2.29
4344 5526 5.633830 TGCTCTAATGAGGCTTGAAAAAG 57.366 39.130 0.00 0.00 40.53 2.27
4367 5549 2.033675 TGAAAGTGCTCACAATGTGCTG 59.966 45.455 8.78 5.25 37.71 4.41
4373 5555 3.438087 GTGCTCACAATGTGCTGTAAGAT 59.562 43.478 8.78 0.00 37.71 2.40
4439 5621 1.187567 ACTTGCCAATCCACCTTGCC 61.188 55.000 0.00 0.00 0.00 4.52
4441 5623 0.471591 TTGCCAATCCACCTTGCCTT 60.472 50.000 0.00 0.00 0.00 4.35
4442 5624 0.407528 TGCCAATCCACCTTGCCTTA 59.592 50.000 0.00 0.00 0.00 2.69
4443 5625 0.817654 GCCAATCCACCTTGCCTTAC 59.182 55.000 0.00 0.00 0.00 2.34
4444 5626 1.474330 CCAATCCACCTTGCCTTACC 58.526 55.000 0.00 0.00 0.00 2.85
4509 5693 8.833231 TTTAGATACTAGATAATTGCCTGTGC 57.167 34.615 0.00 0.00 38.26 4.57
4518 5702 2.335729 TGCCTGTGCATTGCAACG 59.664 55.556 13.94 7.16 44.23 4.10
4519 5703 2.431260 GCCTGTGCATTGCAACGG 60.431 61.111 13.94 16.68 41.47 4.44
4520 5704 2.259204 CCTGTGCATTGCAACGGG 59.741 61.111 13.94 16.81 41.47 5.28
4521 5705 2.267351 CCTGTGCATTGCAACGGGA 61.267 57.895 23.63 0.00 41.47 5.14
4522 5706 1.597797 CCTGTGCATTGCAACGGGAT 61.598 55.000 23.63 0.00 41.47 3.85
4523 5707 1.093972 CTGTGCATTGCAACGGGATA 58.906 50.000 13.94 0.00 41.47 2.59
4524 5708 1.677576 CTGTGCATTGCAACGGGATAT 59.322 47.619 13.94 0.00 41.47 1.63
4525 5709 2.877786 CTGTGCATTGCAACGGGATATA 59.122 45.455 13.94 0.00 41.47 0.86
4622 6179 9.974980 AATTTGAACTAAAACCACGACAATTAT 57.025 25.926 0.00 0.00 0.00 1.28
4624 6181 9.804758 TTTGAACTAAAACCACGACAATTATTT 57.195 25.926 0.00 0.00 0.00 1.40
4626 6183 9.239002 TGAACTAAAACCACGACAATTATTTTG 57.761 29.630 0.00 0.00 0.00 2.44
4627 6184 8.582433 AACTAAAACCACGACAATTATTTTGG 57.418 30.769 0.00 0.00 0.00 3.28
4628 6185 7.942990 ACTAAAACCACGACAATTATTTTGGA 58.057 30.769 0.00 0.00 0.00 3.53
4629 6186 8.414778 ACTAAAACCACGACAATTATTTTGGAA 58.585 29.630 0.00 0.00 0.00 3.53
4630 6187 9.418045 CTAAAACCACGACAATTATTTTGGAAT 57.582 29.630 0.00 0.00 0.00 3.01
4631 6188 7.650834 AAACCACGACAATTATTTTGGAATG 57.349 32.000 0.00 0.00 0.00 2.67
4632 6189 5.719173 ACCACGACAATTATTTTGGAATGG 58.281 37.500 0.00 0.00 0.00 3.16
4633 6190 5.478679 ACCACGACAATTATTTTGGAATGGA 59.521 36.000 0.00 0.00 0.00 3.41
4634 6191 6.035843 CCACGACAATTATTTTGGAATGGAG 58.964 40.000 0.00 0.00 0.00 3.86
4635 6192 6.035843 CACGACAATTATTTTGGAATGGAGG 58.964 40.000 0.00 0.00 0.00 4.30
4636 6193 5.127031 ACGACAATTATTTTGGAATGGAGGG 59.873 40.000 0.00 0.00 0.00 4.30
4637 6194 5.359576 CGACAATTATTTTGGAATGGAGGGA 59.640 40.000 0.00 0.00 0.00 4.20
4638 6195 6.460123 CGACAATTATTTTGGAATGGAGGGAG 60.460 42.308 0.00 0.00 0.00 4.30
4639 6196 6.263754 ACAATTATTTTGGAATGGAGGGAGT 58.736 36.000 0.00 0.00 0.00 3.85
4640 6197 7.418378 ACAATTATTTTGGAATGGAGGGAGTA 58.582 34.615 0.00 0.00 0.00 2.59
4641 6198 7.898636 ACAATTATTTTGGAATGGAGGGAGTAA 59.101 33.333 0.00 0.00 0.00 2.24
4642 6199 8.416329 CAATTATTTTGGAATGGAGGGAGTAAG 58.584 37.037 0.00 0.00 0.00 2.34
4643 6200 5.796502 ATTTTGGAATGGAGGGAGTAAGA 57.203 39.130 0.00 0.00 0.00 2.10
4644 6201 5.592587 TTTTGGAATGGAGGGAGTAAGAA 57.407 39.130 0.00 0.00 0.00 2.52
4645 6202 5.796502 TTTGGAATGGAGGGAGTAAGAAT 57.203 39.130 0.00 0.00 0.00 2.40
4646 6203 5.796502 TTGGAATGGAGGGAGTAAGAATT 57.203 39.130 0.00 0.00 0.00 2.17
4647 6204 5.796502 TGGAATGGAGGGAGTAAGAATTT 57.203 39.130 0.00 0.00 0.00 1.82
4648 6205 6.901615 TGGAATGGAGGGAGTAAGAATTTA 57.098 37.500 0.00 0.00 0.00 1.40
4657 6214 9.190317 GGAGGGAGTAAGAATTTATGTTTTGAT 57.810 33.333 0.00 0.00 0.00 2.57
4726 6283 3.569701 TCCATTGCTTTCTCAAGTTCCAC 59.430 43.478 0.00 0.00 31.86 4.02
4822 6379 7.187480 TCTATCGACGATGTGAAAAACTCTAG 58.813 38.462 20.42 4.98 0.00 2.43
4863 6429 4.084537 AGCTGTCGTATATTTTACGCATGC 60.085 41.667 7.91 7.91 40.40 4.06
4921 6487 6.126863 TGAATCTTCATTGGTACCAAGAGT 57.873 37.500 30.00 21.24 39.47 3.24
5033 6954 8.778059 AGTCAATATAAGGTGGGACAATTAAGA 58.222 33.333 0.00 0.00 44.16 2.10
5240 7231 8.043113 TGTAGAATCACTGAAGATGCATTAAGT 58.957 33.333 0.00 0.00 0.00 2.24
5241 7232 9.534565 GTAGAATCACTGAAGATGCATTAAGTA 57.465 33.333 0.00 0.00 0.00 2.24
5242 7233 8.659925 AGAATCACTGAAGATGCATTAAGTAG 57.340 34.615 0.00 0.00 0.00 2.57
5286 7372 7.418337 TTTATAGCTGTCTGGTTCACTGATA 57.582 36.000 0.00 0.00 0.00 2.15
5370 7456 8.304596 TGTAATAGCCAAAATAGACTATCTCCG 58.695 37.037 0.00 0.00 0.00 4.63
5552 7638 4.498513 CCACGTATGCTTGGTATTCTACGA 60.499 45.833 6.89 0.00 36.41 3.43
5754 7840 0.544833 TGGTACGGGGTTCCTTGCTA 60.545 55.000 0.00 0.00 0.00 3.49
5793 7879 2.113986 GTGGTCCAGCAAGCAGGT 59.886 61.111 3.34 0.00 0.00 4.00
5884 7970 4.900635 TCTTGCAAGGTCAAGAAGTTTC 57.099 40.909 25.73 0.00 46.56 2.78
5933 8019 2.028567 TGTGTCTGATACATGTTCCGCA 60.029 45.455 2.30 0.00 41.10 5.69
6011 8097 0.034767 TTTCATCTGCAGCTCAGGGG 60.035 55.000 9.47 6.19 43.06 4.79
6139 8225 0.251742 AATGGCAGCCAGCTTAACCA 60.252 50.000 21.51 7.94 44.79 3.67
6151 8237 5.178061 CCAGCTTAACCAATTTGGAATTCC 58.822 41.667 22.19 18.17 40.96 3.01
6170 8277 1.457346 CAAAGTCTCCTGGTGATGGC 58.543 55.000 1.28 0.00 0.00 4.40
6212 8319 0.875059 GAAGGAAGGTTGCCAGAACG 59.125 55.000 0.00 0.00 0.00 3.95
6286 8393 0.322008 GACTGTGCCAAGGAAGGGAG 60.322 60.000 0.00 0.00 0.00 4.30
6295 8402 0.033699 AAGGAAGGGAGCCATGAAGC 60.034 55.000 0.00 0.00 0.00 3.86
6347 8454 4.023173 GGATACAACCGCGCTACC 57.977 61.111 5.56 0.00 0.00 3.18
6403 8510 2.513317 TGGGAATATGATGCCACTCCAA 59.487 45.455 0.00 0.00 35.69 3.53
6428 8535 5.428253 TCCAGTATGATCCAAGTACTTTGC 58.572 41.667 5.07 0.00 39.69 3.68
6523 8632 1.676635 GCTGCCACTCCTTGCATCA 60.677 57.895 0.00 0.00 36.79 3.07
6531 8640 2.043652 CCTTGCATCACCCCAGGG 60.044 66.667 0.00 0.00 42.03 4.45
6535 8644 2.141011 TTGCATCACCCCAGGGACAG 62.141 60.000 7.25 0.00 38.96 3.51
6559 8668 1.944430 GCATTTTCCCTCGGTCGTTCT 60.944 52.381 0.00 0.00 0.00 3.01
6615 8724 4.583489 GTCGTTCTAGTCCATCCAATCCTA 59.417 45.833 0.00 0.00 0.00 2.94
6638 8747 9.036980 CCTACAGCCCTATATGTATTTTAGACT 57.963 37.037 0.00 0.00 31.79 3.24
6677 8786 5.688176 GCTTCTGTATCTGTATCGAACCTTC 59.312 44.000 0.00 0.00 0.00 3.46
6700 12130 2.627515 TGCTATCTCCTTGGACATGC 57.372 50.000 0.00 0.00 0.00 4.06
6867 12302 5.163258 ACCAAACCATCAATTTTGCCAAGTA 60.163 36.000 0.00 0.00 32.34 2.24
6868 12303 5.939296 CCAAACCATCAATTTTGCCAAGTAT 59.061 36.000 0.00 0.00 32.34 2.12
6869 12304 7.102346 CCAAACCATCAATTTTGCCAAGTATA 58.898 34.615 0.00 0.00 32.34 1.47
6912 12349 6.543430 AGCTCTCTGTTAACATTGAGATCT 57.457 37.500 27.69 23.18 35.39 2.75
6971 12408 3.614616 GTGCGTCCAAATTTTCACAAACA 59.385 39.130 0.00 0.00 0.00 2.83
6999 12436 1.990160 TTGTGGGAGGTTTGCGGAGT 61.990 55.000 0.00 0.00 0.00 3.85
7012 12449 2.126031 GGAGTCTGGACGTTCGCC 60.126 66.667 0.00 0.00 36.20 5.54
7013 12450 2.637383 GGAGTCTGGACGTTCGCCT 61.637 63.158 0.00 0.00 36.20 5.52
7014 12451 1.444553 GAGTCTGGACGTTCGCCTG 60.445 63.158 0.00 0.00 36.20 4.85
7015 12452 2.432628 GTCTGGACGTTCGCCTGG 60.433 66.667 0.00 0.00 0.00 4.45
7016 12453 4.373116 TCTGGACGTTCGCCTGGC 62.373 66.667 9.11 9.11 0.00 4.85
7020 12457 3.723348 GACGTTCGCCTGGCCAAC 61.723 66.667 17.78 17.78 0.00 3.77
7032 12469 2.056985 GGCCAACCAAAAGCCATCA 58.943 52.632 0.00 0.00 46.34 3.07
7033 12470 0.320683 GGCCAACCAAAAGCCATCAC 60.321 55.000 0.00 0.00 46.34 3.06
7034 12471 0.667184 GCCAACCAAAAGCCATCACG 60.667 55.000 0.00 0.00 0.00 4.35
7035 12472 0.667184 CCAACCAAAAGCCATCACGC 60.667 55.000 0.00 0.00 0.00 5.34
7036 12473 1.003262 CAACCAAAAGCCATCACGCG 61.003 55.000 3.53 3.53 0.00 6.01
7037 12474 1.452145 AACCAAAAGCCATCACGCGT 61.452 50.000 5.58 5.58 0.00 6.01
7038 12475 1.154225 CCAAAAGCCATCACGCGTC 60.154 57.895 9.86 0.00 0.00 5.19
7039 12476 1.509787 CAAAAGCCATCACGCGTCG 60.510 57.895 9.86 5.44 0.00 5.12
7040 12477 1.959226 AAAAGCCATCACGCGTCGT 60.959 52.632 9.86 0.00 42.36 4.34
7050 12487 1.494189 ACGCGTCGTGTTATTTGGC 59.506 52.632 5.58 0.00 39.18 4.52
7051 12488 1.222766 ACGCGTCGTGTTATTTGGCA 61.223 50.000 5.58 0.00 39.18 4.92
7052 12489 0.110599 CGCGTCGTGTTATTTGGCAA 60.111 50.000 0.00 0.00 0.00 4.52
7053 12490 1.660614 CGCGTCGTGTTATTTGGCAAA 60.661 47.619 16.01 16.01 0.00 3.68
7054 12491 2.386249 GCGTCGTGTTATTTGGCAAAA 58.614 42.857 17.70 3.83 0.00 2.44
7055 12492 2.789893 GCGTCGTGTTATTTGGCAAAAA 59.210 40.909 17.70 9.72 0.00 1.94
7056 12493 3.121496 GCGTCGTGTTATTTGGCAAAAAG 60.121 43.478 17.70 2.90 0.00 2.27
7057 12494 3.121496 CGTCGTGTTATTTGGCAAAAAGC 60.121 43.478 17.70 9.97 44.65 3.51
7087 12524 1.154225 CCAAAAGCCATCACGCGTC 60.154 57.895 9.86 0.00 0.00 5.19
7103 12540 1.664588 GCGTCGTGCTATTTGGCAAAA 60.665 47.619 17.70 5.78 44.18 2.44
7104 12541 2.656085 CGTCGTGCTATTTGGCAAAAA 58.344 42.857 17.70 0.00 44.18 1.94
7105 12542 2.656422 CGTCGTGCTATTTGGCAAAAAG 59.344 45.455 17.70 2.90 44.18 2.27
7157 15594 9.712305 TTTATTTGGCGGATAAATTTTTGAAGA 57.288 25.926 0.00 0.00 0.00 2.87
7190 15627 1.488812 ACATTTGAGGTATAGGCCGCA 59.511 47.619 0.00 0.00 36.56 5.69
7201 15638 3.543680 ATAGGCCGCATATATGTGTCC 57.456 47.619 21.67 19.34 36.63 4.02
7223 15660 3.338126 GACGCGTCCGGACATGTCT 62.338 63.158 32.99 15.25 39.22 3.41
7226 15663 1.509463 GCGTCCGGACATGTCTGTA 59.491 57.895 32.80 14.51 35.14 2.74
7229 15666 1.676529 CGTCCGGACATGTCTGTAGAT 59.323 52.381 32.80 0.00 35.14 1.98
7230 15667 2.876550 CGTCCGGACATGTCTGTAGATA 59.123 50.000 32.80 9.63 35.14 1.98
7238 15675 7.872993 CCGGACATGTCTGTAGATAAATATTGT 59.127 37.037 28.57 0.00 35.14 2.71
7277 15714 3.810743 GCCGTTGGAGATGCCCTTAATAT 60.811 47.826 0.00 0.00 34.97 1.28
7311 15748 7.885922 TCAAATAGTGCTTTGGATTACTTACCA 59.114 33.333 0.00 0.00 36.87 3.25
7318 15755 4.584638 TTGGATTACTTACCACATGCCT 57.415 40.909 0.00 0.00 35.81 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.551883 TCTGCTCTGCTGCAATCAGTA 59.448 47.619 18.46 8.61 42.83 2.74
26 27 1.010580 CTCTGCTCTGCTGCAATCAG 58.989 55.000 3.02 10.91 42.83 2.90
71 78 4.206958 TGCTAAGCATGCAGTCGG 57.793 55.556 21.98 6.15 35.31 4.79
201 208 2.833121 GCGTTTATGGCCCTGGGG 60.833 66.667 16.03 4.75 38.57 4.96
266 273 2.334181 TGCGTGCATGTGGTGATGG 61.334 57.895 7.93 0.00 0.00 3.51
329 340 9.710900 TCGAATTTATCTACTACTATGTCCGTA 57.289 33.333 0.00 0.00 0.00 4.02
403 416 1.085501 ACGGTGCTGAACGAAAACGT 61.086 50.000 0.00 0.00 0.00 3.99
652 1017 2.388232 GGACTTTAGTGGCACGGCG 61.388 63.158 12.71 4.80 0.00 6.46
656 1021 2.563179 TCTCTCAGGACTTTAGTGGCAC 59.437 50.000 10.29 10.29 0.00 5.01
657 1022 2.828520 CTCTCTCAGGACTTTAGTGGCA 59.171 50.000 0.00 0.00 0.00 4.92
658 1023 2.418060 GCTCTCTCAGGACTTTAGTGGC 60.418 54.545 0.00 0.00 0.00 5.01
659 1024 2.159310 CGCTCTCTCAGGACTTTAGTGG 60.159 54.545 0.00 0.00 0.00 4.00
660 1025 2.159310 CCGCTCTCTCAGGACTTTAGTG 60.159 54.545 0.00 0.00 0.00 2.74
670 1037 2.186384 CCTTGGCCGCTCTCTCAG 59.814 66.667 0.00 0.00 0.00 3.35
888 1273 4.179599 CCTCCTCCCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
889 1274 3.036959 TCCTCCTCCCCTCCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
890 1275 2.929738 ATCTCCTCCTCCCCTCCCCT 62.930 65.000 0.00 0.00 0.00 4.79
891 1276 2.395180 GATCTCCTCCTCCCCTCCCC 62.395 70.000 0.00 0.00 0.00 4.81
892 1277 1.157513 GATCTCCTCCTCCCCTCCC 59.842 68.421 0.00 0.00 0.00 4.30
893 1278 1.228737 CGATCTCCTCCTCCCCTCC 60.229 68.421 0.00 0.00 0.00 4.30
894 1279 0.251165 CTCGATCTCCTCCTCCCCTC 60.251 65.000 0.00 0.00 0.00 4.30
895 1280 1.725169 CCTCGATCTCCTCCTCCCCT 61.725 65.000 0.00 0.00 0.00 4.79
956 1341 1.251251 GCAGCCATCTCCTTGTTGTT 58.749 50.000 0.00 0.00 0.00 2.83
957 1342 0.111061 TGCAGCCATCTCCTTGTTGT 59.889 50.000 0.00 0.00 0.00 3.32
958 1343 0.809385 CTGCAGCCATCTCCTTGTTG 59.191 55.000 0.00 0.00 0.00 3.33
985 1370 1.715019 CCCATTAATGCCCCCGAGGA 61.715 60.000 10.11 0.00 38.24 3.71
1012 1397 1.690633 GGGAGGATGTGGAGCAGGA 60.691 63.158 0.00 0.00 0.00 3.86
1369 1771 1.134075 GCAATGACACGAGCAGCAG 59.866 57.895 0.00 0.00 0.00 4.24
1418 1823 1.807165 CGGTCACCAGATCAGCACG 60.807 63.158 0.00 0.00 0.00 5.34
1439 1844 4.046998 CACAGACACACGCGCGAC 62.047 66.667 39.36 20.22 0.00 5.19
1442 1847 4.360027 CAGCACAGACACACGCGC 62.360 66.667 5.73 0.00 0.00 6.86
1443 1848 4.360027 GCAGCACAGACACACGCG 62.360 66.667 3.53 3.53 0.00 6.01
1444 1849 3.271586 TGCAGCACAGACACACGC 61.272 61.111 0.00 0.00 0.00 5.34
1507 1912 3.458163 CTTACCTCGCCCTCCGCA 61.458 66.667 0.00 0.00 37.30 5.69
1527 1932 0.180642 ACTGGATGGAGCAGCATCTG 59.819 55.000 0.00 0.00 34.12 2.90
1568 1973 0.975887 AAAATCATGGGGGCACACAC 59.024 50.000 0.00 0.00 0.00 3.82
1569 1974 1.622811 GAAAAATCATGGGGGCACACA 59.377 47.619 0.00 0.00 0.00 3.72
1570 1975 1.066215 GGAAAAATCATGGGGGCACAC 60.066 52.381 0.00 0.00 0.00 3.82
1571 1976 1.274712 GGAAAAATCATGGGGGCACA 58.725 50.000 0.00 0.00 0.00 4.57
1639 2045 0.662619 CAGCACGCTGAAACCTGAAA 59.337 50.000 13.87 0.00 46.30 2.69
1702 2108 6.636447 TGAGAAATTGCTAAAAACGACACATG 59.364 34.615 0.00 0.00 0.00 3.21
1703 2109 6.636850 GTGAGAAATTGCTAAAAACGACACAT 59.363 34.615 0.00 0.00 0.00 3.21
1705 2111 5.968848 TGTGAGAAATTGCTAAAAACGACAC 59.031 36.000 0.00 0.00 0.00 3.67
1706 2112 6.125327 TGTGAGAAATTGCTAAAAACGACA 57.875 33.333 0.00 0.00 0.00 4.35
1707 2113 6.855914 TGATGTGAGAAATTGCTAAAAACGAC 59.144 34.615 0.00 0.00 0.00 4.34
1709 2115 7.801547 ATGATGTGAGAAATTGCTAAAAACG 57.198 32.000 0.00 0.00 0.00 3.60
1723 2148 4.645136 ACTCCGTAGCTAAATGATGTGAGA 59.355 41.667 0.00 0.00 0.00 3.27
1726 2151 5.833082 AGTACTCCGTAGCTAAATGATGTG 58.167 41.667 0.00 0.00 0.00 3.21
1765 2453 2.987232 AGGCCTTCCGTTTATTCAGAC 58.013 47.619 0.00 0.00 37.47 3.51
1782 2470 1.664151 GCACATTGTACTACGGAAGGC 59.336 52.381 0.00 0.00 0.00 4.35
1787 2475 2.967362 TCAAGGCACATTGTACTACGG 58.033 47.619 0.00 0.00 0.00 4.02
1791 2479 5.009631 TGCTAAATCAAGGCACATTGTACT 58.990 37.500 0.00 0.00 0.00 2.73
1794 2482 4.751060 CATGCTAAATCAAGGCACATTGT 58.249 39.130 0.00 0.00 38.83 2.71
1802 2490 2.555757 GCCTAGGCATGCTAAATCAAGG 59.444 50.000 29.33 13.79 41.49 3.61
1892 2606 7.004086 AGATTACCCAGAAGTTTGTCATTTGA 58.996 34.615 0.00 0.00 0.00 2.69
1893 2607 7.086376 CAGATTACCCAGAAGTTTGTCATTTG 58.914 38.462 0.00 0.00 0.00 2.32
1911 2625 3.751698 AGAACGAGCAAAACCCAGATTAC 59.248 43.478 0.00 0.00 0.00 1.89
1913 2627 2.814336 GAGAACGAGCAAAACCCAGATT 59.186 45.455 0.00 0.00 0.00 2.40
1914 2628 2.039084 AGAGAACGAGCAAAACCCAGAT 59.961 45.455 0.00 0.00 0.00 2.90
1915 2629 1.416401 AGAGAACGAGCAAAACCCAGA 59.584 47.619 0.00 0.00 0.00 3.86
1916 2630 1.884235 AGAGAACGAGCAAAACCCAG 58.116 50.000 0.00 0.00 0.00 4.45
1917 2631 2.158813 AGAAGAGAACGAGCAAAACCCA 60.159 45.455 0.00 0.00 0.00 4.51
1918 2632 2.495084 AGAAGAGAACGAGCAAAACCC 58.505 47.619 0.00 0.00 0.00 4.11
1919 2633 4.557205 TCTAGAAGAGAACGAGCAAAACC 58.443 43.478 0.00 0.00 0.00 3.27
1920 2634 6.346999 CCTTTCTAGAAGAGAACGAGCAAAAC 60.347 42.308 5.12 0.00 44.12 2.43
1922 2636 5.010719 TCCTTTCTAGAAGAGAACGAGCAAA 59.989 40.000 5.12 0.00 44.12 3.68
1924 2638 4.079970 TCCTTTCTAGAAGAGAACGAGCA 58.920 43.478 5.12 0.00 44.12 4.26
1925 2639 4.396790 TCTCCTTTCTAGAAGAGAACGAGC 59.603 45.833 17.66 0.00 44.12 5.03
1926 2640 5.878116 TCTCTCCTTTCTAGAAGAGAACGAG 59.122 44.000 19.47 15.64 44.12 4.18
1927 2641 5.806818 TCTCTCCTTTCTAGAAGAGAACGA 58.193 41.667 19.47 13.79 44.12 3.85
1928 2642 6.503589 TTCTCTCCTTTCTAGAAGAGAACG 57.496 41.667 22.40 13.76 44.12 3.95
1929 2643 7.763985 CCATTTCTCTCCTTTCTAGAAGAGAAC 59.236 40.741 24.61 0.00 44.12 3.01
1930 2644 7.676043 TCCATTTCTCTCCTTTCTAGAAGAGAA 59.324 37.037 22.40 22.40 42.69 2.87
1931 2645 7.185565 TCCATTTCTCTCCTTTCTAGAAGAGA 58.814 38.462 18.45 18.45 34.34 3.10
1932 2646 7.416964 TCCATTTCTCTCCTTTCTAGAAGAG 57.583 40.000 13.18 13.18 31.30 2.85
1933 2647 7.798710 TTCCATTTCTCTCCTTTCTAGAAGA 57.201 36.000 5.12 0.00 31.30 2.87
1959 2673 6.857964 CGACAGTTAAAATTCACAAGCAGAAT 59.142 34.615 0.00 0.00 37.30 2.40
1965 3061 8.560576 AACAATCGACAGTTAAAATTCACAAG 57.439 30.769 2.74 0.00 0.00 3.16
1968 3064 7.360361 AGGAACAATCGACAGTTAAAATTCAC 58.640 34.615 4.48 0.00 0.00 3.18
1973 3069 7.118680 GTCCATAGGAACAATCGACAGTTAAAA 59.881 37.037 4.48 0.00 31.38 1.52
1976 3072 5.186215 TGTCCATAGGAACAATCGACAGTTA 59.814 40.000 4.48 0.00 31.38 2.24
1983 3079 3.490896 CGACATGTCCATAGGAACAATCG 59.509 47.826 20.03 0.00 31.38 3.34
2015 3111 1.468520 CCAATCGAGAATGTGCGGTTT 59.531 47.619 0.00 0.00 0.00 3.27
2025 3121 4.065088 CAAAGACCTGAACCAATCGAGAA 58.935 43.478 0.00 0.00 0.00 2.87
2067 3163 3.244911 TGTCATCTTCCCCTTCAAACCTC 60.245 47.826 0.00 0.00 0.00 3.85
2202 3298 1.132689 AGTGGAGGGAAACAGTCCTCT 60.133 52.381 8.95 0.00 46.92 3.69
2228 3324 6.658816 GGCCCAAATAAAATTTCCAAACTCAT 59.341 34.615 0.00 0.00 0.00 2.90
2281 3377 0.179129 GGCGCAATCCAAACCATGAG 60.179 55.000 10.83 0.00 0.00 2.90
2292 3388 1.739067 AAGTGGTTAGAGGCGCAATC 58.261 50.000 10.83 6.76 0.00 2.67
2438 3536 2.625737 CATACTCCTGGTCAAGCACTG 58.374 52.381 0.00 0.00 0.00 3.66
2489 3589 5.407387 AGTGTAACGTTTACCAGCAACATAG 59.593 40.000 5.91 0.00 45.86 2.23
2593 3700 5.736951 AGACTAAAATGCAGTCAGAGAGT 57.263 39.130 5.90 0.00 44.03 3.24
2600 3710 6.414987 GTGTGTTTGAAGACTAAAATGCAGTC 59.585 38.462 0.00 0.00 42.30 3.51
2606 3716 8.691661 AGGTATGTGTGTTTGAAGACTAAAAT 57.308 30.769 0.00 0.00 0.00 1.82
2636 3746 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2637 3747 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2638 3748 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2639 3749 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2640 3750 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2641 3751 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2642 3752 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2643 3753 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2644 3754 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2645 3755 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2646 3756 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
2647 3757 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
2648 3758 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
2649 3759 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
2650 3760 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
2651 3761 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
2652 3762 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
2653 3763 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
2654 3764 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
2655 3765 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
2656 3766 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
2657 3767 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2671 3781 7.608153 TGCACTAGCTCTAGTACAAATTTGTA 58.392 34.615 23.91 23.91 43.98 2.41
2672 3782 6.464222 TGCACTAGCTCTAGTACAAATTTGT 58.536 36.000 25.99 25.99 43.98 2.83
2673 3783 6.968131 TGCACTAGCTCTAGTACAAATTTG 57.032 37.500 16.67 16.67 43.98 2.32
2674 3784 7.979444 TTTGCACTAGCTCTAGTACAAATTT 57.021 32.000 22.18 0.00 46.35 1.82
2678 3788 5.723672 ACTTTGCACTAGCTCTAGTACAA 57.276 39.130 15.21 15.21 43.71 2.41
2679 3789 5.243060 TCAACTTTGCACTAGCTCTAGTACA 59.757 40.000 9.04 7.44 43.98 2.90
2680 3790 5.710984 TCAACTTTGCACTAGCTCTAGTAC 58.289 41.667 9.04 5.00 43.98 2.73
2681 3791 5.710567 TCTCAACTTTGCACTAGCTCTAGTA 59.289 40.000 9.04 0.00 43.98 1.82
2682 3792 4.524714 TCTCAACTTTGCACTAGCTCTAGT 59.475 41.667 3.84 3.84 46.52 2.57
2683 3793 4.862018 GTCTCAACTTTGCACTAGCTCTAG 59.138 45.833 0.00 2.55 42.74 2.43
2684 3794 4.280929 TGTCTCAACTTTGCACTAGCTCTA 59.719 41.667 0.00 0.00 42.74 2.43
2685 3795 3.070159 TGTCTCAACTTTGCACTAGCTCT 59.930 43.478 0.00 0.00 42.74 4.09
2686 3796 3.185391 GTGTCTCAACTTTGCACTAGCTC 59.815 47.826 0.00 0.00 42.74 4.09
2687 3797 3.134458 GTGTCTCAACTTTGCACTAGCT 58.866 45.455 0.00 0.00 42.74 3.32
2688 3798 3.134458 AGTGTCTCAACTTTGCACTAGC 58.866 45.455 0.00 0.00 38.46 3.42
2689 3799 7.426929 AATAAGTGTCTCAACTTTGCACTAG 57.573 36.000 0.00 0.00 40.77 2.57
2690 3800 7.801716 AAATAAGTGTCTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
2691 3801 6.699575 AAATAAGTGTCTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
2692 3802 6.198966 CCAAAATAAGTGTCTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
2693 3803 6.272318 CCAAAATAAGTGTCTCAACTTTGCA 58.728 36.000 0.00 0.00 40.77 4.08
2694 3804 5.691754 CCCAAAATAAGTGTCTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
2695 3805 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
2696 3806 7.255942 CCATCCCAAAATAAGTGTCTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
2697 3807 6.209391 CCATCCCAAAATAAGTGTCTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
2698 3808 5.711976 CCATCCCAAAATAAGTGTCTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
2699 3809 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
2700 3810 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
2701 3811 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
2702 3812 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
2703 3813 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
2704 3814 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
2705 3815 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
2706 3816 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
2707 3817 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
2708 3818 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
2709 3819 7.715267 TTATACTCCCTCCATCCCAAAATAA 57.285 36.000 0.00 0.00 0.00 1.40
2710 3820 7.905144 ATTATACTCCCTCCATCCCAAAATA 57.095 36.000 0.00 0.00 0.00 1.40
2711 3821 6.803587 ATTATACTCCCTCCATCCCAAAAT 57.196 37.500 0.00 0.00 0.00 1.82
2712 3822 6.606241 AATTATACTCCCTCCATCCCAAAA 57.394 37.500 0.00 0.00 0.00 2.44
2713 3823 6.372931 CAAATTATACTCCCTCCATCCCAAA 58.627 40.000 0.00 0.00 0.00 3.28
2714 3824 5.162991 CCAAATTATACTCCCTCCATCCCAA 60.163 44.000 0.00 0.00 0.00 4.12
2715 3825 4.353788 CCAAATTATACTCCCTCCATCCCA 59.646 45.833 0.00 0.00 0.00 4.37
2716 3826 4.263949 CCCAAATTATACTCCCTCCATCCC 60.264 50.000 0.00 0.00 0.00 3.85
2717 3827 4.601857 TCCCAAATTATACTCCCTCCATCC 59.398 45.833 0.00 0.00 0.00 3.51
2718 3828 5.280727 CCTCCCAAATTATACTCCCTCCATC 60.281 48.000 0.00 0.00 0.00 3.51
2719 3829 4.603610 CCTCCCAAATTATACTCCCTCCAT 59.396 45.833 0.00 0.00 0.00 3.41
2720 3830 3.980698 CCTCCCAAATTATACTCCCTCCA 59.019 47.826 0.00 0.00 0.00 3.86
2721 3831 4.041815 GTCCTCCCAAATTATACTCCCTCC 59.958 50.000 0.00 0.00 0.00 4.30
2722 3832 4.908481 AGTCCTCCCAAATTATACTCCCTC 59.092 45.833 0.00 0.00 0.00 4.30
2723 3833 4.908481 GAGTCCTCCCAAATTATACTCCCT 59.092 45.833 0.00 0.00 0.00 4.20
2724 3834 4.908481 AGAGTCCTCCCAAATTATACTCCC 59.092 45.833 0.00 0.00 33.91 4.30
2725 3835 6.502074 AAGAGTCCTCCCAAATTATACTCC 57.498 41.667 0.00 0.00 33.91 3.85
2726 3836 9.549078 CTAAAAGAGTCCTCCCAAATTATACTC 57.451 37.037 0.00 0.00 33.67 2.59
2727 3837 9.059023 ACTAAAAGAGTCCTCCCAAATTATACT 57.941 33.333 0.00 0.00 29.95 2.12
2728 3838 9.110502 CACTAAAAGAGTCCTCCCAAATTATAC 57.889 37.037 0.00 0.00 35.64 1.47
2729 3839 9.053472 TCACTAAAAGAGTCCTCCCAAATTATA 57.947 33.333 0.00 0.00 35.64 0.98
2730 3840 7.928873 TCACTAAAAGAGTCCTCCCAAATTAT 58.071 34.615 0.00 0.00 35.64 1.28
2737 3847 2.567615 TGCTCACTAAAAGAGTCCTCCC 59.432 50.000 0.00 0.00 35.64 4.30
3121 4248 5.700832 TGTACCTTGCTAGAACAACAAGATG 59.299 40.000 8.20 0.00 42.71 2.90
3150 4277 6.873076 GCAAAAGGACCATTTTCATAACATCA 59.127 34.615 0.00 0.00 30.01 3.07
3163 4291 1.147817 ACCTGGAAGCAAAAGGACCAT 59.852 47.619 0.00 0.00 34.97 3.55
3164 4292 0.555769 ACCTGGAAGCAAAAGGACCA 59.444 50.000 0.00 0.00 34.97 4.02
3165 4293 1.248486 GACCTGGAAGCAAAAGGACC 58.752 55.000 0.00 0.00 34.97 4.46
3166 4294 1.981256 TGACCTGGAAGCAAAAGGAC 58.019 50.000 0.00 0.00 34.97 3.85
3167 4295 2.306847 GTTGACCTGGAAGCAAAAGGA 58.693 47.619 0.00 0.00 34.97 3.36
3169 4297 2.031120 TGGTTGACCTGGAAGCAAAAG 58.969 47.619 0.00 0.00 36.82 2.27
3170 4298 1.754226 GTGGTTGACCTGGAAGCAAAA 59.246 47.619 0.00 0.00 32.89 2.44
3624 4755 5.968676 ACTACTTAATGTATGGGAAGGCA 57.031 39.130 0.00 0.00 0.00 4.75
3787 4958 6.913873 TTCACTGTCCTTTTGTAGTTACAC 57.086 37.500 0.00 0.00 35.64 2.90
3808 4979 4.918810 ATGGTTTCAGTGAACAGGTTTC 57.081 40.909 4.68 0.00 0.00 2.78
3913 5086 2.042686 TAAATTCGGATGCAGCAGCT 57.957 45.000 11.16 0.00 42.74 4.24
4290 5472 6.883217 GTCAGATTCATGGTCAGGCAATATAT 59.117 38.462 0.00 0.00 0.00 0.86
4342 5524 4.675510 CACATTGTGAGCACTTTCAACTT 58.324 39.130 11.45 0.00 35.23 2.66
4344 5526 2.791004 GCACATTGTGAGCACTTTCAAC 59.209 45.455 20.77 0.00 35.23 3.18
4367 5549 6.821388 ACCTGAATGTGAGGATGTATCTTAC 58.179 40.000 0.00 0.00 34.37 2.34
4373 5555 6.212589 TGAGTAAACCTGAATGTGAGGATGTA 59.787 38.462 0.00 0.00 34.37 2.29
4504 5688 1.093972 TATCCCGTTGCAATGCACAG 58.906 50.000 7.72 4.64 38.71 3.66
4505 5689 1.761449 ATATCCCGTTGCAATGCACA 58.239 45.000 7.72 0.00 38.71 4.57
4506 5690 3.980646 TTATATCCCGTTGCAATGCAC 57.019 42.857 7.72 2.39 38.71 4.57
4507 5691 6.832520 ATATTTATATCCCGTTGCAATGCA 57.167 33.333 13.42 2.72 36.47 3.96
4508 5692 7.538575 AGAATATTTATATCCCGTTGCAATGC 58.461 34.615 13.42 0.00 0.00 3.56
4510 5694 9.959721 ACTAGAATATTTATATCCCGTTGCAAT 57.040 29.630 0.59 0.00 0.00 3.56
4539 5723 2.361789 GCAGGTAAATCACGGGCTAAA 58.638 47.619 0.00 0.00 0.00 1.85
4549 5733 7.759489 TCACATTAATATGGGCAGGTAAATC 57.241 36.000 0.00 0.00 35.03 2.17
4610 6167 5.960113 TCCATTCCAAAATAATTGTCGTGG 58.040 37.500 0.00 0.00 0.00 4.94
4613 6170 5.359576 TCCCTCCATTCCAAAATAATTGTCG 59.640 40.000 0.00 0.00 0.00 4.35
4622 6179 5.592587 TTCTTACTCCCTCCATTCCAAAA 57.407 39.130 0.00 0.00 0.00 2.44
4624 6181 5.796502 AATTCTTACTCCCTCCATTCCAA 57.203 39.130 0.00 0.00 0.00 3.53
4626 6183 7.290813 ACATAAATTCTTACTCCCTCCATTCC 58.709 38.462 0.00 0.00 0.00 3.01
4627 6184 8.753497 AACATAAATTCTTACTCCCTCCATTC 57.247 34.615 0.00 0.00 0.00 2.67
4628 6185 9.547279 AAAACATAAATTCTTACTCCCTCCATT 57.453 29.630 0.00 0.00 0.00 3.16
4629 6186 8.971073 CAAAACATAAATTCTTACTCCCTCCAT 58.029 33.333 0.00 0.00 0.00 3.41
4630 6187 8.167392 TCAAAACATAAATTCTTACTCCCTCCA 58.833 33.333 0.00 0.00 0.00 3.86
4631 6188 8.575649 TCAAAACATAAATTCTTACTCCCTCC 57.424 34.615 0.00 0.00 0.00 4.30
4696 6253 5.787953 TGAGAAAGCAATGGAAAATGACA 57.212 34.783 0.00 0.00 0.00 3.58
4803 6360 5.348724 TCATGCTAGAGTTTTTCACATCGTC 59.651 40.000 0.00 0.00 0.00 4.20
4822 6379 2.421424 AGCTCGTCTCCAAAAATCATGC 59.579 45.455 0.00 0.00 0.00 4.06
4863 6429 4.497006 GGCTGATTGGATCGAGTTGAAATG 60.497 45.833 0.00 0.00 0.00 2.32
4911 6477 3.344904 TCGCGCTATTACTCTTGGTAC 57.655 47.619 5.56 0.00 0.00 3.34
4921 6487 9.750125 ATGATAATCTAATTGATCGCGCTATTA 57.250 29.630 5.56 0.84 33.57 0.98
5033 6954 3.093814 ACCACTTTTCCTTGAAAACCGT 58.906 40.909 0.00 0.00 36.73 4.83
5200 7191 7.065563 CAGTGATTCTACAGCTAGAGCAAATTT 59.934 37.037 4.01 0.00 45.16 1.82
5272 7358 6.358974 TTCACAGATTATCAGTGAACCAGA 57.641 37.500 23.08 6.94 44.35 3.86
5286 7372 6.725364 AGGGTATCATTTCAGTTCACAGATT 58.275 36.000 0.00 0.00 0.00 2.40
5370 7456 2.959707 ACCAACTATCTCGATCTCCCAC 59.040 50.000 0.00 0.00 0.00 4.61
5793 7879 1.451449 TAGGGGCTTTGAGGTGGAAA 58.549 50.000 0.00 0.00 0.00 3.13
5884 7970 1.067495 GGAACAGAGGAACCGTCTGAG 60.067 57.143 19.47 0.00 43.65 3.35
5912 7998 2.028567 TGCGGAACATGTATCAGACACA 60.029 45.455 0.00 0.00 42.17 3.72
5933 8019 1.318934 ACAGCCCATATCCCCCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
6011 8097 4.506095 GGAGTAGACAGGGAGAGAGGATAC 60.506 54.167 0.00 0.00 0.00 2.24
6151 8237 1.457346 GCCATCACCAGGAGACTTTG 58.543 55.000 0.00 0.00 40.21 2.77
6156 8242 2.685017 AGCGCCATCACCAGGAGA 60.685 61.111 2.29 0.00 0.00 3.71
6212 8319 0.598065 ACCCGAAAAGCATGCAACTC 59.402 50.000 21.98 11.37 0.00 3.01
6286 8393 1.364626 CTGACAGTCGGCTTCATGGC 61.365 60.000 0.00 0.00 37.94 4.40
6295 8402 1.874019 CGCGGATTCTGACAGTCGG 60.874 63.158 2.51 2.51 0.00 4.79
6403 8510 6.543831 GCAAAGTACTTGGATCATACTGGAAT 59.456 38.462 14.52 0.00 35.38 3.01
6457 8564 1.078918 TCCCTGAATGCGCAGACTG 60.079 57.895 18.32 15.28 38.14 3.51
6523 8632 2.930562 GCTGACTGTCCCTGGGGT 60.931 66.667 14.00 2.33 36.47 4.95
6531 8640 1.734465 CGAGGGAAAATGCTGACTGTC 59.266 52.381 0.00 0.00 0.00 3.51
6535 8644 1.087501 GACCGAGGGAAAATGCTGAC 58.912 55.000 0.00 0.00 0.00 3.51
6559 8668 1.063492 TCAGGAATACGGCTGGGACTA 60.063 52.381 0.00 0.00 0.00 2.59
6638 8747 7.979537 AGATACAGAAGCGACACACATAAAATA 59.020 33.333 0.00 0.00 0.00 1.40
6677 8786 4.261489 GCATGTCCAAGGAGATAGCAAATG 60.261 45.833 12.41 0.00 0.00 2.32
6700 12130 5.762825 TTAAGTACTAGCGGTGATACAGG 57.237 43.478 0.00 0.00 0.00 4.00
6838 12270 5.335035 GGCAAAATTGATGGTTTGGTCAATG 60.335 40.000 0.00 0.00 42.52 2.82
6868 12303 9.319060 AGAGCTAGGAAATTCTCATATGACATA 57.681 33.333 0.00 0.00 0.00 2.29
6869 12304 8.204903 AGAGCTAGGAAATTCTCATATGACAT 57.795 34.615 0.00 0.00 0.00 3.06
6933 12370 3.925379 ACGCACATATTGTCTGTTCTCA 58.075 40.909 0.00 0.00 0.00 3.27
6941 12378 5.861251 TGAAAATTTGGACGCACATATTGTC 59.139 36.000 0.00 6.43 31.00 3.18
6945 12382 5.384063 TGTGAAAATTTGGACGCACATAT 57.616 34.783 0.00 0.00 32.01 1.78
6971 12408 4.398319 CAAACCTCCCACAACTACATCTT 58.602 43.478 0.00 0.00 0.00 2.40
6999 12436 4.373116 GCCAGGCGAACGTCCAGA 62.373 66.667 0.00 0.00 0.00 3.86
7014 12451 0.320683 GTGATGGCTTTTGGTTGGCC 60.321 55.000 0.00 0.00 45.45 5.36
7015 12452 0.667184 CGTGATGGCTTTTGGTTGGC 60.667 55.000 0.00 0.00 0.00 4.52
7016 12453 0.667184 GCGTGATGGCTTTTGGTTGG 60.667 55.000 0.00 0.00 0.00 3.77
7017 12454 1.003262 CGCGTGATGGCTTTTGGTTG 61.003 55.000 0.00 0.00 0.00 3.77
7018 12455 1.285641 CGCGTGATGGCTTTTGGTT 59.714 52.632 0.00 0.00 0.00 3.67
7019 12456 1.852067 GACGCGTGATGGCTTTTGGT 61.852 55.000 20.70 0.00 0.00 3.67
7020 12457 1.154225 GACGCGTGATGGCTTTTGG 60.154 57.895 20.70 0.00 0.00 3.28
7021 12458 1.509787 CGACGCGTGATGGCTTTTG 60.510 57.895 20.70 0.00 0.00 2.44
7022 12459 1.959226 ACGACGCGTGATGGCTTTT 60.959 52.632 20.70 0.00 39.18 2.27
7023 12460 2.357034 ACGACGCGTGATGGCTTT 60.357 55.556 20.70 0.00 39.18 3.51
7032 12469 1.222766 TGCCAAATAACACGACGCGT 61.223 50.000 13.85 13.85 42.36 6.01
7033 12470 0.110599 TTGCCAAATAACACGACGCG 60.111 50.000 3.53 3.53 0.00 6.01
7034 12471 2.039327 TTTGCCAAATAACACGACGC 57.961 45.000 0.00 0.00 0.00 5.19
7035 12472 3.121496 GCTTTTTGCCAAATAACACGACG 60.121 43.478 0.00 0.00 35.15 5.12
7036 12473 3.121496 CGCTTTTTGCCAAATAACACGAC 60.121 43.478 0.00 0.00 38.78 4.34
7037 12474 3.046390 CGCTTTTTGCCAAATAACACGA 58.954 40.909 0.00 0.00 38.78 4.35
7038 12475 2.154772 CCGCTTTTTGCCAAATAACACG 59.845 45.455 0.00 0.00 38.78 4.49
7039 12476 2.096466 GCCGCTTTTTGCCAAATAACAC 60.096 45.455 0.00 0.00 38.78 3.32
7040 12477 2.139118 GCCGCTTTTTGCCAAATAACA 58.861 42.857 0.00 0.00 38.78 2.41
7041 12478 2.873170 GCCGCTTTTTGCCAAATAAC 57.127 45.000 0.00 0.00 38.78 1.89
7059 12496 2.031012 GCTTTTGGTTGGCCAGGC 59.969 61.111 5.11 1.26 46.91 4.85
7060 12497 2.743060 GGCTTTTGGTTGGCCAGG 59.257 61.111 5.11 0.00 46.91 4.45
7087 12524 1.386412 CGCTTTTTGCCAAATAGCACG 59.614 47.619 25.27 11.51 43.97 5.34
7103 12540 1.066430 TCCGTCAAATAGAAGCCGCTT 60.066 47.619 4.98 4.98 0.00 4.68
7104 12541 0.535335 TCCGTCAAATAGAAGCCGCT 59.465 50.000 0.00 0.00 0.00 5.52
7105 12542 1.365699 TTCCGTCAAATAGAAGCCGC 58.634 50.000 0.00 0.00 0.00 6.53
7107 12544 2.223044 CGCTTTCCGTCAAATAGAAGCC 60.223 50.000 0.00 0.00 0.00 4.35
7157 15594 6.506538 ACCTCAAATGTCTGCCTCTATTAT 57.493 37.500 0.00 0.00 0.00 1.28
7190 15627 2.065993 GCGTCTGCGGACACATATAT 57.934 50.000 24.91 0.00 42.21 0.86
7209 15646 1.092348 TCTACAGACATGTCCGGACG 58.908 55.000 28.70 18.15 41.01 4.79
7254 15691 1.558167 TAAGGGCATCTCCAACGGCA 61.558 55.000 0.00 0.00 36.21 5.69
7257 15694 7.504924 TTAAATATTAAGGGCATCTCCAACG 57.495 36.000 0.00 0.00 36.21 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.