Multiple sequence alignment - TraesCS3D01G291900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G291900 chr3D 100.000 3652 0 0 1 3652 401885384 401881733 0.000000e+00 6745.0
1 TraesCS3D01G291900 chr3D 88.312 154 16 2 3491 3643 595107624 595107776 2.240000e-42 183.0
2 TraesCS3D01G291900 chr3D 85.821 134 13 3 216 349 425976237 425976110 1.770000e-28 137.0
3 TraesCS3D01G291900 chr3D 83.333 132 21 1 1046 1177 170178807 170178677 1.780000e-23 121.0
4 TraesCS3D01G291900 chr3A 96.517 1780 57 3 970 2745 522189029 522187251 0.000000e+00 2939.0
5 TraesCS3D01G291900 chr3A 91.506 518 24 8 3152 3652 522187257 522186743 0.000000e+00 695.0
6 TraesCS3D01G291900 chr3A 88.049 410 41 7 2747 3152 474840979 474840574 2.550000e-131 479.0
7 TraesCS3D01G291900 chr3A 81.818 319 46 5 2739 3053 731021513 731021203 1.300000e-64 257.0
8 TraesCS3D01G291900 chr3B 94.385 1781 66 11 995 2744 527303081 527301304 0.000000e+00 2704.0
9 TraesCS3D01G291900 chr3B 85.735 680 60 16 356 1007 527303906 527303236 0.000000e+00 684.0
10 TraesCS3D01G291900 chr3B 88.862 413 38 6 2746 3155 540916868 540917275 5.440000e-138 501.0
11 TraesCS3D01G291900 chr3B 86.996 223 29 0 81 303 527371228 527371006 6.050000e-63 252.0
12 TraesCS3D01G291900 chr6D 90.338 414 27 8 2746 3154 425868219 425867814 6.940000e-147 531.0
13 TraesCS3D01G291900 chr6D 86.131 411 48 8 2749 3154 14973730 14973324 5.600000e-118 435.0
14 TraesCS3D01G291900 chr6D 88.889 162 17 1 3491 3652 144066046 144066206 8.000000e-47 198.0
15 TraesCS3D01G291900 chr6D 78.808 302 44 16 66 349 3225175 3225474 6.230000e-43 185.0
16 TraesCS3D01G291900 chr6D 91.111 90 7 1 3400 3488 385637271 385637182 1.780000e-23 121.0
17 TraesCS3D01G291900 chr2D 88.509 409 39 7 2746 3154 334080333 334080733 4.240000e-134 488.0
18 TraesCS3D01G291900 chr1D 85.539 408 50 5 2745 3149 41866219 41866620 5.640000e-113 418.0
19 TraesCS3D01G291900 chr1D 88.043 92 9 2 3399 3489 175763510 175763600 1.390000e-19 108.0
20 TraesCS3D01G291900 chr1D 84.211 95 15 0 217 311 395856334 395856240 3.880000e-15 93.5
21 TraesCS3D01G291900 chr2A 85.294 408 48 11 2749 3154 762453733 762453336 9.440000e-111 411.0
22 TraesCS3D01G291900 chr2A 89.506 162 16 1 3491 3652 419462573 419462413 1.720000e-48 204.0
23 TraesCS3D01G291900 chr2A 90.000 80 7 1 3411 3489 419462441 419462520 6.450000e-18 102.0
24 TraesCS3D01G291900 chr4B 85.024 414 48 13 2744 3153 642548064 642547661 3.390000e-110 409.0
25 TraesCS3D01G291900 chr4B 81.667 420 69 8 2738 3153 15424989 15425404 3.490000e-90 342.0
26 TraesCS3D01G291900 chr4B 89.011 91 8 2 3401 3489 322691191 322691281 1.070000e-20 111.0
27 TraesCS3D01G291900 chr4B 89.011 91 9 1 3400 3489 322769699 322769789 1.070000e-20 111.0
28 TraesCS3D01G291900 chr7B 84.746 413 55 6 2746 3154 63008356 63008764 1.220000e-109 407.0
29 TraesCS3D01G291900 chr7B 92.683 41 2 1 3449 3489 592513549 592513510 1.420000e-04 58.4
30 TraesCS3D01G291900 chr4D 85.678 391 47 8 2757 3142 359422690 359422304 1.580000e-108 403.0
31 TraesCS3D01G291900 chr4D 83.412 422 56 12 2739 3153 4931948 4932362 2.660000e-101 379.0
32 TraesCS3D01G291900 chr4D 89.130 92 9 1 3399 3489 363594966 363595057 2.980000e-21 113.0
33 TraesCS3D01G291900 chr4D 84.946 93 12 2 3399 3489 179848362 179848270 3.880000e-15 93.5
34 TraesCS3D01G291900 chr4A 79.108 426 62 21 2739 3149 712637674 712638087 6.010000e-68 268.0
35 TraesCS3D01G291900 chr4A 78.723 423 68 20 2739 3149 712826169 712826581 2.800000e-66 263.0
36 TraesCS3D01G291900 chr4A 78.638 426 64 21 2739 3149 712656567 712656980 1.300000e-64 257.0
37 TraesCS3D01G291900 chr5B 90.062 161 14 2 3493 3652 641024176 641024017 1.330000e-49 207.0
38 TraesCS3D01G291900 chr5D 89.571 163 15 2 3491 3652 195652943 195652782 4.780000e-49 206.0
39 TraesCS3D01G291900 chr2B 89.506 162 16 1 3491 3652 383373977 383374137 1.720000e-48 204.0
40 TraesCS3D01G291900 chr2B 76.531 294 48 11 75 349 732502389 732502098 1.370000e-29 141.0
41 TraesCS3D01G291900 chr2B 76.703 279 47 8 79 339 258780769 258780491 4.920000e-29 139.0
42 TraesCS3D01G291900 chr2B 87.879 99 12 0 1079 1177 371878269 371878367 2.300000e-22 117.0
43 TraesCS3D01G291900 chr2B 80.142 141 27 1 219 358 785878129 785878269 1.790000e-18 104.0
44 TraesCS3D01G291900 chr6B 88.957 163 16 2 3491 3652 88890797 88890958 2.220000e-47 200.0
45 TraesCS3D01G291900 chr5A 88.344 163 16 3 3491 3652 232836594 232836434 3.720000e-45 193.0
46 TraesCS3D01G291900 chr1A 87.826 115 11 2 1838 1952 22786255 22786144 8.230000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G291900 chr3D 401881733 401885384 3651 True 6745 6745 100.0000 1 3652 1 chr3D.!!$R2 3651
1 TraesCS3D01G291900 chr3A 522186743 522189029 2286 True 1817 2939 94.0115 970 3652 2 chr3A.!!$R3 2682
2 TraesCS3D01G291900 chr3B 527301304 527303906 2602 True 1694 2704 90.0600 356 2744 2 chr3B.!!$R2 2388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.033699 AGAAGCTGGGGAGAAATGCC 60.034 55.0 0.00 0.00 0.00 4.40 F
124 125 0.036010 AAATGCCGGACTGGACTCTG 60.036 55.0 5.05 0.00 42.00 3.35 F
158 159 0.036010 CTCCACCACCTCATCCACAC 60.036 60.0 0.00 0.00 0.00 3.82 F
258 259 0.107508 CCAGAACCGTCCTGCATGAT 60.108 55.0 0.00 0.00 0.00 2.45 F
260 261 0.179000 AGAACCGTCCTGCATGATCC 59.821 55.0 0.00 0.00 0.00 3.36 F
2053 2251 0.471191 AATCAGGGATGATCTGCGCA 59.529 50.0 10.98 10.98 32.63 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2241 0.250166 CATGGAGGATGCGCAGATCA 60.250 55.000 18.32 10.08 0.00 2.92 R
2208 2406 1.610038 CAGCTTTGCAAGACCACATCA 59.390 47.619 0.00 0.00 0.00 3.07 R
2393 2591 3.688185 GCAGATATACCATGTGCCATCTG 59.312 47.826 15.19 15.19 41.37 2.90 R
2501 2708 5.250543 CCAGTCATATATAACCCCACATGGA 59.749 44.000 0.00 0.00 37.39 3.41 R
2610 2831 3.795623 ATTCACAGCAAGGATCAATGC 57.204 42.857 12.61 12.61 42.87 3.56 R
3020 3247 0.035152 TGCATGAGGTTCGCTCCAAT 60.035 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.662961 CGCACAGCCTCCACGACA 62.663 66.667 0.00 0.00 0.00 4.35
23 24 3.044305 GCACAGCCTCCACGACAC 61.044 66.667 0.00 0.00 0.00 3.67
24 25 2.357517 CACAGCCTCCACGACACC 60.358 66.667 0.00 0.00 0.00 4.16
25 26 3.991051 ACAGCCTCCACGACACCG 61.991 66.667 0.00 0.00 42.50 4.94
26 27 3.680786 CAGCCTCCACGACACCGA 61.681 66.667 0.00 0.00 39.50 4.69
27 28 3.681835 AGCCTCCACGACACCGAC 61.682 66.667 0.00 0.00 39.50 4.79
29 30 3.359523 CCTCCACGACACCGACGA 61.360 66.667 0.00 0.00 39.50 4.20
30 31 2.176055 CTCCACGACACCGACGAG 59.824 66.667 0.00 0.00 39.50 4.18
31 32 3.948086 CTCCACGACACCGACGAGC 62.948 68.421 0.00 0.00 39.50 5.03
93 94 2.815211 CGGCACACCATCGTCCAG 60.815 66.667 0.00 0.00 34.57 3.86
94 95 2.662596 GGCACACCATCGTCCAGA 59.337 61.111 0.00 0.00 35.26 3.86
95 96 1.003839 GGCACACCATCGTCCAGAA 60.004 57.895 0.00 0.00 35.26 3.02
96 97 1.021390 GGCACACCATCGTCCAGAAG 61.021 60.000 0.00 0.00 35.26 2.85
97 98 1.639298 GCACACCATCGTCCAGAAGC 61.639 60.000 0.00 0.00 0.00 3.86
98 99 0.036952 CACACCATCGTCCAGAAGCT 60.037 55.000 0.00 0.00 0.00 3.74
99 100 0.036952 ACACCATCGTCCAGAAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
110 111 1.101331 CAGAAGCTGGGGAGAAATGC 58.899 55.000 0.00 0.00 0.00 3.56
111 112 0.033699 AGAAGCTGGGGAGAAATGCC 60.034 55.000 0.00 0.00 0.00 4.40
112 113 1.379044 AAGCTGGGGAGAAATGCCG 60.379 57.895 0.00 0.00 0.00 5.69
113 114 2.830370 GCTGGGGAGAAATGCCGG 60.830 66.667 0.00 0.00 0.00 6.13
114 115 2.998097 CTGGGGAGAAATGCCGGA 59.002 61.111 5.05 0.00 0.00 5.14
115 116 1.452108 CTGGGGAGAAATGCCGGAC 60.452 63.158 5.05 0.00 0.00 4.79
116 117 1.915078 CTGGGGAGAAATGCCGGACT 61.915 60.000 5.05 0.00 0.00 3.85
117 118 1.452108 GGGGAGAAATGCCGGACTG 60.452 63.158 5.05 0.00 0.00 3.51
118 119 1.452108 GGGAGAAATGCCGGACTGG 60.452 63.158 5.05 0.00 42.50 4.00
119 120 1.602237 GGAGAAATGCCGGACTGGA 59.398 57.895 5.05 0.00 42.00 3.86
120 121 0.744771 GGAGAAATGCCGGACTGGAC 60.745 60.000 5.05 0.00 42.00 4.02
121 122 0.250513 GAGAAATGCCGGACTGGACT 59.749 55.000 5.05 0.00 42.00 3.85
122 123 0.250513 AGAAATGCCGGACTGGACTC 59.749 55.000 5.05 0.00 42.00 3.36
123 124 0.250513 GAAATGCCGGACTGGACTCT 59.749 55.000 5.05 0.00 42.00 3.24
124 125 0.036010 AAATGCCGGACTGGACTCTG 60.036 55.000 5.05 0.00 42.00 3.35
125 126 1.903877 AATGCCGGACTGGACTCTGG 61.904 60.000 5.05 0.00 42.00 3.86
126 127 3.775654 GCCGGACTGGACTCTGGG 61.776 72.222 5.05 0.00 42.00 4.45
127 128 2.037367 CCGGACTGGACTCTGGGA 59.963 66.667 0.00 0.00 42.00 4.37
128 129 2.352032 CCGGACTGGACTCTGGGAC 61.352 68.421 0.00 0.00 42.00 4.46
129 130 2.701780 CGGACTGGACTCTGGGACG 61.702 68.421 0.00 0.00 0.00 4.79
130 131 2.574399 GACTGGACTCTGGGACGC 59.426 66.667 0.00 0.00 0.00 5.19
131 132 3.343788 GACTGGACTCTGGGACGCG 62.344 68.421 3.53 3.53 0.00 6.01
132 133 4.803426 CTGGACTCTGGGACGCGC 62.803 72.222 5.73 0.00 0.00 6.86
149 150 3.941188 CACGCACCTCCACCACCT 61.941 66.667 0.00 0.00 0.00 4.00
150 151 3.626924 ACGCACCTCCACCACCTC 61.627 66.667 0.00 0.00 0.00 3.85
151 152 3.625897 CGCACCTCCACCACCTCA 61.626 66.667 0.00 0.00 0.00 3.86
152 153 2.959484 CGCACCTCCACCACCTCAT 61.959 63.158 0.00 0.00 0.00 2.90
153 154 1.078143 GCACCTCCACCACCTCATC 60.078 63.158 0.00 0.00 0.00 2.92
154 155 1.604378 CACCTCCACCACCTCATCC 59.396 63.158 0.00 0.00 0.00 3.51
155 156 1.160870 ACCTCCACCACCTCATCCA 59.839 57.895 0.00 0.00 0.00 3.41
156 157 1.201429 ACCTCCACCACCTCATCCAC 61.201 60.000 0.00 0.00 0.00 4.02
157 158 1.200760 CCTCCACCACCTCATCCACA 61.201 60.000 0.00 0.00 0.00 4.17
158 159 0.036010 CTCCACCACCTCATCCACAC 60.036 60.000 0.00 0.00 0.00 3.82
159 160 1.002134 CCACCACCTCATCCACACC 60.002 63.158 0.00 0.00 0.00 4.16
160 161 1.760527 CACCACCTCATCCACACCA 59.239 57.895 0.00 0.00 0.00 4.17
161 162 0.606401 CACCACCTCATCCACACCAC 60.606 60.000 0.00 0.00 0.00 4.16
162 163 1.002134 CCACCTCATCCACACCACC 60.002 63.158 0.00 0.00 0.00 4.61
163 164 1.760527 CACCTCATCCACACCACCA 59.239 57.895 0.00 0.00 0.00 4.17
164 165 0.321919 CACCTCATCCACACCACCAG 60.322 60.000 0.00 0.00 0.00 4.00
165 166 1.377725 CCTCATCCACACCACCAGC 60.378 63.158 0.00 0.00 0.00 4.85
166 167 1.376086 CTCATCCACACCACCAGCA 59.624 57.895 0.00 0.00 0.00 4.41
167 168 0.957395 CTCATCCACACCACCAGCAC 60.957 60.000 0.00 0.00 0.00 4.40
168 169 1.073722 CATCCACACCACCAGCACT 59.926 57.895 0.00 0.00 0.00 4.40
169 170 1.073722 ATCCACACCACCAGCACTG 59.926 57.895 0.00 0.00 0.00 3.66
170 171 3.289834 CCACACCACCAGCACTGC 61.290 66.667 0.00 0.00 0.00 4.40
171 172 3.289834 CACACCACCAGCACTGCC 61.290 66.667 0.00 0.00 0.00 4.85
172 173 4.586235 ACACCACCAGCACTGCCC 62.586 66.667 0.00 0.00 0.00 5.36
173 174 4.584518 CACCACCAGCACTGCCCA 62.585 66.667 0.00 0.00 0.00 5.36
174 175 3.583380 ACCACCAGCACTGCCCAT 61.583 61.111 0.00 0.00 0.00 4.00
175 176 2.283388 CCACCAGCACTGCCCATT 60.283 61.111 0.00 0.00 0.00 3.16
176 177 2.642254 CCACCAGCACTGCCCATTG 61.642 63.158 0.00 0.00 0.00 2.82
177 178 1.604308 CACCAGCACTGCCCATTGA 60.604 57.895 0.00 0.00 0.00 2.57
178 179 0.968901 CACCAGCACTGCCCATTGAT 60.969 55.000 0.00 0.00 0.00 2.57
179 180 0.682209 ACCAGCACTGCCCATTGATC 60.682 55.000 0.00 0.00 0.00 2.92
180 181 1.389609 CCAGCACTGCCCATTGATCC 61.390 60.000 0.00 0.00 0.00 3.36
181 182 0.681887 CAGCACTGCCCATTGATCCA 60.682 55.000 0.00 0.00 0.00 3.41
182 183 0.682209 AGCACTGCCCATTGATCCAC 60.682 55.000 0.00 0.00 0.00 4.02
183 184 1.996786 GCACTGCCCATTGATCCACG 61.997 60.000 0.00 0.00 0.00 4.94
184 185 1.077501 ACTGCCCATTGATCCACGG 60.078 57.895 0.00 0.00 0.00 4.94
185 186 2.440065 TGCCCATTGATCCACGGC 60.440 61.111 3.85 3.85 40.16 5.68
186 187 2.440065 GCCCATTGATCCACGGCA 60.440 61.111 5.57 0.00 39.50 5.69
187 188 2.484062 GCCCATTGATCCACGGCAG 61.484 63.158 5.57 0.00 39.50 4.85
188 189 2.484062 CCCATTGATCCACGGCAGC 61.484 63.158 0.00 0.00 0.00 5.25
189 190 1.750018 CCATTGATCCACGGCAGCA 60.750 57.895 0.00 0.00 0.00 4.41
190 191 1.314534 CCATTGATCCACGGCAGCAA 61.315 55.000 0.00 0.00 0.00 3.91
191 192 0.179156 CATTGATCCACGGCAGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
192 193 1.647545 ATTGATCCACGGCAGCAACG 61.648 55.000 0.00 0.00 37.36 4.10
193 194 3.499737 GATCCACGGCAGCAACGG 61.500 66.667 0.00 0.00 35.23 4.44
247 248 2.104331 CGGATCGGACCAGAACCG 59.896 66.667 16.21 16.21 46.93 4.44
248 249 2.707849 CGGATCGGACCAGAACCGT 61.708 63.158 19.50 0.00 46.88 4.83
249 250 2.609183 CGGATCGGACCAGAACCGTC 62.609 65.000 19.50 0.00 46.88 4.79
251 252 1.305046 ATCGGACCAGAACCGTCCT 60.305 57.895 0.00 0.00 46.48 3.85
252 253 1.605058 ATCGGACCAGAACCGTCCTG 61.605 60.000 0.00 0.00 46.48 3.86
253 254 2.047179 GGACCAGAACCGTCCTGC 60.047 66.667 0.00 0.00 45.41 4.85
254 255 2.741092 GACCAGAACCGTCCTGCA 59.259 61.111 0.00 0.00 0.00 4.41
255 256 1.296715 GACCAGAACCGTCCTGCAT 59.703 57.895 0.00 0.00 0.00 3.96
256 257 1.003355 ACCAGAACCGTCCTGCATG 60.003 57.895 0.00 0.00 0.00 4.06
257 258 1.296392 CCAGAACCGTCCTGCATGA 59.704 57.895 0.00 0.00 0.00 3.07
258 259 0.107508 CCAGAACCGTCCTGCATGAT 60.108 55.000 0.00 0.00 0.00 2.45
259 260 1.293924 CAGAACCGTCCTGCATGATC 58.706 55.000 0.00 0.00 0.00 2.92
260 261 0.179000 AGAACCGTCCTGCATGATCC 59.821 55.000 0.00 0.00 0.00 3.36
261 262 1.153369 AACCGTCCTGCATGATCCG 60.153 57.895 0.00 0.00 0.00 4.18
262 263 2.969238 CCGTCCTGCATGATCCGC 60.969 66.667 0.00 0.00 0.00 5.54
263 264 2.969238 CGTCCTGCATGATCCGCC 60.969 66.667 0.00 0.00 0.00 6.13
264 265 2.592861 GTCCTGCATGATCCGCCC 60.593 66.667 0.00 0.00 0.00 6.13
265 266 4.240103 TCCTGCATGATCCGCCCG 62.240 66.667 0.00 0.00 0.00 6.13
266 267 4.240103 CCTGCATGATCCGCCCGA 62.240 66.667 0.00 0.00 0.00 5.14
267 268 2.203056 CTGCATGATCCGCCCGAA 60.203 61.111 0.00 0.00 0.00 4.30
268 269 2.203056 TGCATGATCCGCCCGAAG 60.203 61.111 0.00 0.00 0.00 3.79
294 295 4.704833 CCCGCCTCCACCACACAG 62.705 72.222 0.00 0.00 0.00 3.66
319 320 4.451150 GACACCGATGAGCGCCCA 62.451 66.667 2.29 0.00 39.11 5.36
320 321 4.760047 ACACCGATGAGCGCCCAC 62.760 66.667 2.29 0.00 39.11 4.61
393 394 1.896465 AGACAGACGGGGAGAAGAAAG 59.104 52.381 0.00 0.00 0.00 2.62
500 501 3.803162 GCTGGGGAGGAAGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
501 502 2.041928 CTGGGGAGGAAGAGGCCT 59.958 66.667 3.86 3.86 42.17 5.19
502 503 2.285668 TGGGGAGGAAGAGGCCTG 60.286 66.667 12.00 0.00 38.73 4.85
505 506 3.803162 GGAGGAAGAGGCCTGCCC 61.803 72.222 12.00 8.47 39.09 5.36
506 507 3.803162 GAGGAAGAGGCCTGCCCC 61.803 72.222 12.00 8.04 39.09 5.80
564 574 2.033602 CCCTCCCCTCGCGTTTTT 59.966 61.111 5.77 0.00 0.00 1.94
589 599 4.946160 ACCTCCCAAATGATTTGTCCTA 57.054 40.909 15.93 0.00 38.98 2.94
594 604 4.770010 TCCCAAATGATTTGTCCTACCAAC 59.230 41.667 15.93 0.00 38.98 3.77
632 642 1.594293 CGCGTGTGTGTTCTTCCCT 60.594 57.895 0.00 0.00 0.00 4.20
648 658 2.307768 TCCCTGAGAACCTAGCATACG 58.692 52.381 0.00 0.00 0.00 3.06
650 660 2.034812 CCCTGAGAACCTAGCATACGAC 59.965 54.545 0.00 0.00 0.00 4.34
667 677 1.338769 CGACGGAGGAGGGTTTTGATT 60.339 52.381 0.00 0.00 0.00 2.57
673 683 1.186200 GGAGGGTTTTGATTGGAGGC 58.814 55.000 0.00 0.00 0.00 4.70
674 684 1.549950 GGAGGGTTTTGATTGGAGGCA 60.550 52.381 0.00 0.00 0.00 4.75
680 690 2.833943 GTTTTGATTGGAGGCAGGGATT 59.166 45.455 0.00 0.00 0.00 3.01
690 700 2.046023 CAGGGATTGCAGCCGTGA 60.046 61.111 19.68 0.00 42.36 4.35
715 725 4.574271 TCGGAGCGGGCGGATCTA 62.574 66.667 10.18 0.00 0.00 1.98
717 727 3.686045 GGAGCGGGCGGATCTAGG 61.686 72.222 10.18 0.00 0.00 3.02
754 764 2.052690 GGTGTCTAGCCGGCTCTCA 61.053 63.158 36.73 26.07 0.00 3.27
762 772 4.749310 CCGGCTCTCAGCGCTTGT 62.749 66.667 7.50 0.00 43.62 3.16
764 774 2.320587 CGGCTCTCAGCGCTTGTTT 61.321 57.895 7.50 0.00 43.62 2.83
786 796 4.818534 TGGCGGTAATAGTAGTAGTTCG 57.181 45.455 0.00 0.00 0.00 3.95
787 797 3.565482 TGGCGGTAATAGTAGTAGTTCGG 59.435 47.826 0.00 0.00 0.00 4.30
793 803 7.074502 CGGTAATAGTAGTAGTTCGGTTGATC 58.925 42.308 0.00 0.00 0.00 2.92
794 804 7.254898 CGGTAATAGTAGTAGTTCGGTTGATCA 60.255 40.741 0.00 0.00 0.00 2.92
799 809 9.886132 ATAGTAGTAGTTCGGTTGATCAAAATT 57.114 29.630 10.35 0.74 0.00 1.82
805 815 7.372451 AGTTCGGTTGATCAAAATTTCGATA 57.628 32.000 10.35 4.26 0.00 2.92
897 913 5.068234 AGAAATCATCACACCTGCAAATG 57.932 39.130 0.00 0.00 0.00 2.32
905 921 4.180057 TCACACCTGCAAATGTTGTTTTC 58.820 39.130 0.00 0.00 0.00 2.29
906 922 3.931468 CACACCTGCAAATGTTGTTTTCA 59.069 39.130 0.00 0.00 0.00 2.69
907 923 3.932089 ACACCTGCAAATGTTGTTTTCAC 59.068 39.130 0.00 0.00 0.00 3.18
908 924 3.931468 CACCTGCAAATGTTGTTTTCACA 59.069 39.130 0.00 0.00 0.00 3.58
910 926 5.752472 CACCTGCAAATGTTGTTTTCACATA 59.248 36.000 0.00 0.00 31.06 2.29
912 928 6.424509 ACCTGCAAATGTTGTTTTCACATATG 59.575 34.615 0.00 0.00 31.06 1.78
924 953 2.279741 TCACATATGCTTCGCTGGAAC 58.720 47.619 1.58 0.00 0.00 3.62
934 963 1.657181 CGCTGGAACGTGCAAAACC 60.657 57.895 0.00 0.00 0.00 3.27
940 969 2.033550 TGGAACGTGCAAAACCACATAC 59.966 45.455 0.00 0.00 35.47 2.39
946 975 1.959985 TGCAAAACCACATACCCACAG 59.040 47.619 0.00 0.00 0.00 3.66
961 990 3.543680 CCACAGGGACGACTTCATAAT 57.456 47.619 0.00 0.00 35.59 1.28
962 991 4.665833 CCACAGGGACGACTTCATAATA 57.334 45.455 0.00 0.00 35.59 0.98
963 992 4.369182 CCACAGGGACGACTTCATAATAC 58.631 47.826 0.00 0.00 35.59 1.89
964 993 4.099573 CCACAGGGACGACTTCATAATACT 59.900 45.833 0.00 0.00 35.59 2.12
965 994 5.282510 CACAGGGACGACTTCATAATACTC 58.717 45.833 0.00 0.00 0.00 2.59
966 995 4.341520 ACAGGGACGACTTCATAATACTCC 59.658 45.833 0.00 0.00 0.00 3.85
1033 1229 5.297547 AGAGTCAAAGATAAACACGAGCAA 58.702 37.500 0.00 0.00 0.00 3.91
1314 1510 0.954452 GGTTCTTGCTCCAACCACTG 59.046 55.000 6.44 0.00 41.65 3.66
1397 1595 0.823356 TTTCAGCAGTTCTGGGGCAC 60.823 55.000 1.97 0.00 43.06 5.01
1477 1675 0.526096 CCAATATGCGCTTGTGTGGC 60.526 55.000 9.73 0.00 0.00 5.01
1624 1822 2.871182 TGCTAATGTGTCTAGCTCCG 57.129 50.000 0.00 0.00 41.96 4.63
1637 1835 0.905357 AGCTCCGCTTGTGAACCTAT 59.095 50.000 0.00 0.00 33.89 2.57
1691 1889 8.625651 TCTGATGCTACAGAGTATTTCTAAGAC 58.374 37.037 8.80 0.00 41.21 3.01
1781 1979 3.695830 TGAATCTAGCCGAAAGTGGTT 57.304 42.857 0.00 0.00 0.00 3.67
1836 2034 5.186996 AGTAGAAACAAAACCATGTGCTG 57.813 39.130 0.00 0.00 32.81 4.41
1845 2043 5.156355 CAAAACCATGTGCTGTTCTCATAC 58.844 41.667 0.00 0.00 0.00 2.39
1890 2088 2.297033 TCAAATTGCAGCCTCCAACTTC 59.703 45.455 0.00 0.00 0.00 3.01
2043 2241 1.188863 GTGCTGCCAAAATCAGGGAT 58.811 50.000 0.00 0.00 32.41 3.85
2053 2251 0.471191 AATCAGGGATGATCTGCGCA 59.529 50.000 10.98 10.98 32.63 6.09
2501 2708 3.187058 GCCGTTGGCGATGTCATT 58.813 55.556 0.00 0.00 39.62 2.57
2610 2831 6.828785 AGCTACTTAAACATAACCCTGATTGG 59.171 38.462 0.00 0.00 0.00 3.16
2623 2844 2.223971 CCTGATTGGCATTGATCCTTGC 60.224 50.000 8.14 8.14 38.14 4.01
2665 2886 0.318869 TCATGCTTTGCTTGTTGCGG 60.319 50.000 5.57 0.00 46.63 5.69
2717 2944 4.097012 GGCAATTTGGCATTAATTTTGCG 58.903 39.130 17.26 0.00 43.14 4.85
2736 2963 6.745159 TTGCGTGCTAACTTTATATTGGAA 57.255 33.333 0.00 0.00 0.00 3.53
2744 2971 8.902806 TGCTAACTTTATATTGGAAATCAGGTG 58.097 33.333 0.00 0.00 0.00 4.00
2745 2972 7.862873 GCTAACTTTATATTGGAAATCAGGTGC 59.137 37.037 0.00 0.00 0.00 5.01
2746 2973 6.377327 ACTTTATATTGGAAATCAGGTGCG 57.623 37.500 0.00 0.00 0.00 5.34
2747 2974 6.119536 ACTTTATATTGGAAATCAGGTGCGA 58.880 36.000 0.00 0.00 0.00 5.10
2748 2975 6.772716 ACTTTATATTGGAAATCAGGTGCGAT 59.227 34.615 0.00 0.00 0.00 4.58
2749 2976 7.936847 ACTTTATATTGGAAATCAGGTGCGATA 59.063 33.333 0.00 0.00 0.00 2.92
2750 2977 8.684386 TTTATATTGGAAATCAGGTGCGATAA 57.316 30.769 0.00 0.00 0.00 1.75
2751 2978 8.862325 TTATATTGGAAATCAGGTGCGATAAT 57.138 30.769 0.00 0.00 0.00 1.28
2752 2979 7.765695 ATATTGGAAATCAGGTGCGATAATT 57.234 32.000 0.00 0.00 0.00 1.40
2753 2980 5.499139 TTGGAAATCAGGTGCGATAATTC 57.501 39.130 0.00 0.00 0.00 2.17
2754 2981 4.522114 TGGAAATCAGGTGCGATAATTCA 58.478 39.130 0.00 0.00 0.00 2.57
2755 2982 5.132502 TGGAAATCAGGTGCGATAATTCAT 58.867 37.500 0.00 0.00 0.00 2.57
2756 2983 5.593909 TGGAAATCAGGTGCGATAATTCATT 59.406 36.000 0.00 0.00 0.00 2.57
2757 2984 6.096705 TGGAAATCAGGTGCGATAATTCATTT 59.903 34.615 0.00 0.00 0.00 2.32
2758 2985 6.980397 GGAAATCAGGTGCGATAATTCATTTT 59.020 34.615 0.00 0.00 0.00 1.82
2759 2986 7.492344 GGAAATCAGGTGCGATAATTCATTTTT 59.508 33.333 0.00 0.00 0.00 1.94
2760 2987 7.760131 AATCAGGTGCGATAATTCATTTTTG 57.240 32.000 0.00 0.00 0.00 2.44
2761 2988 6.507958 TCAGGTGCGATAATTCATTTTTGA 57.492 33.333 0.00 0.00 0.00 2.69
2762 2989 6.554419 TCAGGTGCGATAATTCATTTTTGAG 58.446 36.000 0.00 0.00 0.00 3.02
2763 2990 5.230726 CAGGTGCGATAATTCATTTTTGAGC 59.769 40.000 0.00 0.00 0.00 4.26
2764 2991 4.504097 GGTGCGATAATTCATTTTTGAGCC 59.496 41.667 0.00 0.00 0.00 4.70
2765 2992 4.504097 GTGCGATAATTCATTTTTGAGCCC 59.496 41.667 0.00 0.00 0.00 5.19
2766 2993 4.159321 TGCGATAATTCATTTTTGAGCCCA 59.841 37.500 0.00 0.00 0.00 5.36
2767 2994 4.741676 GCGATAATTCATTTTTGAGCCCAG 59.258 41.667 0.00 0.00 0.00 4.45
2768 2995 5.284079 CGATAATTCATTTTTGAGCCCAGG 58.716 41.667 0.00 0.00 0.00 4.45
2769 2996 3.339253 AATTCATTTTTGAGCCCAGGC 57.661 42.857 0.00 0.00 42.33 4.85
2779 3006 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
2780 3007 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
2781 3008 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
2782 3009 2.672908 CAGGCTCATCTGCACCCA 59.327 61.111 0.00 0.00 34.04 4.51
2783 3010 1.748122 CAGGCTCATCTGCACCCAC 60.748 63.158 0.00 0.00 34.04 4.61
2784 3011 2.821366 GGCTCATCTGCACCCACG 60.821 66.667 0.00 0.00 34.04 4.94
2785 3012 3.503363 GCTCATCTGCACCCACGC 61.503 66.667 0.00 0.00 0.00 5.34
2786 3013 2.267006 CTCATCTGCACCCACGCT 59.733 61.111 0.00 0.00 0.00 5.07
2787 3014 2.046988 TCATCTGCACCCACGCTG 60.047 61.111 0.00 0.00 0.00 5.18
2788 3015 2.046988 CATCTGCACCCACGCTGA 60.047 61.111 0.00 0.00 42.94 4.26
2789 3016 2.046892 ATCTGCACCCACGCTGAC 60.047 61.111 0.00 0.00 41.80 3.51
2790 3017 3.939837 ATCTGCACCCACGCTGACG 62.940 63.158 0.00 0.00 41.80 4.35
2791 3018 4.662961 CTGCACCCACGCTGACGA 62.663 66.667 0.00 0.00 43.93 4.20
2792 3019 4.228567 TGCACCCACGCTGACGAA 62.229 61.111 0.00 0.00 43.93 3.85
2793 3020 2.970324 GCACCCACGCTGACGAAA 60.970 61.111 0.00 0.00 43.93 3.46
2794 3021 2.539338 GCACCCACGCTGACGAAAA 61.539 57.895 0.00 0.00 43.93 2.29
2795 3022 2.018544 CACCCACGCTGACGAAAAA 58.981 52.632 0.00 0.00 43.93 1.94
2861 3088 9.729023 TTTTTATGTGGTAGATAATTTGATGCG 57.271 29.630 0.00 0.00 0.00 4.73
2862 3089 8.445275 TTTATGTGGTAGATAATTTGATGCGT 57.555 30.769 0.00 0.00 0.00 5.24
2863 3090 5.733226 TGTGGTAGATAATTTGATGCGTG 57.267 39.130 0.00 0.00 0.00 5.34
2864 3091 5.423886 TGTGGTAGATAATTTGATGCGTGA 58.576 37.500 0.00 0.00 0.00 4.35
2865 3092 5.523552 TGTGGTAGATAATTTGATGCGTGAG 59.476 40.000 0.00 0.00 0.00 3.51
2866 3093 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
2867 3094 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
2868 3095 5.527582 GGTAGATAATTTGATGCGTGAGGTT 59.472 40.000 0.00 0.00 0.00 3.50
2869 3096 5.741388 AGATAATTTGATGCGTGAGGTTC 57.259 39.130 0.00 0.00 0.00 3.62
2870 3097 2.900122 AATTTGATGCGTGAGGTTCG 57.100 45.000 0.00 0.00 0.00 3.95
2877 3104 4.598257 CGTGAGGTTCGCTCCAAT 57.402 55.556 0.00 0.00 0.00 3.16
2878 3105 2.840974 CGTGAGGTTCGCTCCAATT 58.159 52.632 0.00 0.00 0.00 2.32
2879 3106 1.156736 CGTGAGGTTCGCTCCAATTT 58.843 50.000 0.00 0.00 0.00 1.82
2880 3107 1.535462 CGTGAGGTTCGCTCCAATTTT 59.465 47.619 0.00 0.00 0.00 1.82
2881 3108 2.412847 CGTGAGGTTCGCTCCAATTTTC 60.413 50.000 0.00 0.00 0.00 2.29
2882 3109 2.552315 GTGAGGTTCGCTCCAATTTTCA 59.448 45.455 0.00 0.00 0.00 2.69
2883 3110 3.004315 GTGAGGTTCGCTCCAATTTTCAA 59.996 43.478 0.00 0.00 0.00 2.69
2884 3111 3.253188 TGAGGTTCGCTCCAATTTTCAAG 59.747 43.478 0.00 0.00 0.00 3.02
2885 3112 3.222603 AGGTTCGCTCCAATTTTCAAGT 58.777 40.909 0.00 0.00 0.00 3.16
2886 3113 3.253432 AGGTTCGCTCCAATTTTCAAGTC 59.747 43.478 0.00 0.00 0.00 3.01
2887 3114 3.004315 GGTTCGCTCCAATTTTCAAGTCA 59.996 43.478 0.00 0.00 0.00 3.41
2888 3115 4.321230 GGTTCGCTCCAATTTTCAAGTCAT 60.321 41.667 0.00 0.00 0.00 3.06
2889 3116 5.222631 GTTCGCTCCAATTTTCAAGTCATT 58.777 37.500 0.00 0.00 0.00 2.57
2890 3117 5.452078 TCGCTCCAATTTTCAAGTCATTT 57.548 34.783 0.00 0.00 0.00 2.32
2891 3118 5.221880 TCGCTCCAATTTTCAAGTCATTTG 58.778 37.500 0.00 0.00 38.17 2.32
2892 3119 4.386652 CGCTCCAATTTTCAAGTCATTTGG 59.613 41.667 0.00 0.00 37.39 3.28
2893 3120 5.540911 GCTCCAATTTTCAAGTCATTTGGA 58.459 37.500 0.00 0.00 40.08 3.53
2894 3121 6.168389 GCTCCAATTTTCAAGTCATTTGGAT 58.832 36.000 2.93 0.00 41.13 3.41
2895 3122 7.322664 GCTCCAATTTTCAAGTCATTTGGATA 58.677 34.615 2.93 0.00 41.13 2.59
2896 3123 7.983484 GCTCCAATTTTCAAGTCATTTGGATAT 59.017 33.333 2.93 0.00 41.13 1.63
2897 3124 9.525409 CTCCAATTTTCAAGTCATTTGGATATC 57.475 33.333 2.93 0.00 41.13 1.63
2898 3125 9.258629 TCCAATTTTCAAGTCATTTGGATATCT 57.741 29.630 2.05 0.00 38.10 1.98
2899 3126 9.309516 CCAATTTTCAAGTCATTTGGATATCTG 57.690 33.333 2.05 0.00 36.55 2.90
2902 3129 6.932356 TTCAAGTCATTTGGATATCTGAGC 57.068 37.500 2.05 0.00 37.39 4.26
2903 3130 5.993055 TCAAGTCATTTGGATATCTGAGCA 58.007 37.500 2.05 0.00 37.39 4.26
2904 3131 6.053650 TCAAGTCATTTGGATATCTGAGCAG 58.946 40.000 2.05 0.00 37.39 4.24
2905 3132 4.387598 AGTCATTTGGATATCTGAGCAGC 58.612 43.478 2.05 0.00 0.00 5.25
2906 3133 4.102838 AGTCATTTGGATATCTGAGCAGCT 59.897 41.667 0.00 0.00 0.00 4.24
2907 3134 4.451774 GTCATTTGGATATCTGAGCAGCTC 59.548 45.833 16.21 16.21 0.00 4.09
2908 3135 4.347292 TCATTTGGATATCTGAGCAGCTCT 59.653 41.667 23.15 5.93 0.00 4.09
2909 3136 4.333913 TTTGGATATCTGAGCAGCTCTC 57.666 45.455 23.15 11.57 42.23 3.20
2910 3137 1.885233 TGGATATCTGAGCAGCTCTCG 59.115 52.381 23.15 13.93 44.86 4.04
2912 3139 0.602562 ATATCTGAGCAGCTCTCGGC 59.397 55.000 23.15 0.00 45.76 5.54
2913 3140 0.753111 TATCTGAGCAGCTCTCGGCA 60.753 55.000 23.15 2.15 45.76 5.69
2914 3141 1.611474 ATCTGAGCAGCTCTCGGCAA 61.611 55.000 23.15 0.68 45.76 4.52
2915 3142 1.375140 CTGAGCAGCTCTCGGCAAA 60.375 57.895 23.15 0.00 44.86 3.68
2916 3143 0.952497 CTGAGCAGCTCTCGGCAAAA 60.952 55.000 23.15 0.00 44.86 2.44
2917 3144 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
2938 3165 7.654022 AAAAAGACAAATTCAGGGTCTGTAA 57.346 32.000 0.00 0.00 40.80 2.41
2939 3166 7.654022 AAAAGACAAATTCAGGGTCTGTAAA 57.346 32.000 0.00 0.00 40.80 2.01
2940 3167 7.654022 AAAGACAAATTCAGGGTCTGTAAAA 57.346 32.000 0.00 0.00 40.80 1.52
2941 3168 7.654022 AAGACAAATTCAGGGTCTGTAAAAA 57.346 32.000 0.00 0.00 40.80 1.94
2961 3188 5.978934 AAAAGGTTACTGTTCACGTACTG 57.021 39.130 0.00 0.00 0.00 2.74
2962 3189 4.660789 AAGGTTACTGTTCACGTACTGT 57.339 40.909 6.30 6.30 34.96 3.55
2963 3190 4.660789 AGGTTACTGTTCACGTACTGTT 57.339 40.909 6.35 0.00 33.15 3.16
2964 3191 4.614946 AGGTTACTGTTCACGTACTGTTC 58.385 43.478 6.35 2.16 33.15 3.18
2965 3192 4.340381 AGGTTACTGTTCACGTACTGTTCT 59.660 41.667 6.35 1.46 33.15 3.01
2966 3193 4.443394 GGTTACTGTTCACGTACTGTTCTG 59.557 45.833 6.35 0.00 33.15 3.02
2967 3194 5.276270 GTTACTGTTCACGTACTGTTCTGA 58.724 41.667 6.35 0.00 33.15 3.27
2968 3195 3.703420 ACTGTTCACGTACTGTTCTGAC 58.297 45.455 0.00 0.00 0.00 3.51
2969 3196 3.050619 CTGTTCACGTACTGTTCTGACC 58.949 50.000 0.00 0.00 0.00 4.02
2970 3197 2.691526 TGTTCACGTACTGTTCTGACCT 59.308 45.455 0.00 0.00 0.00 3.85
2971 3198 3.050619 GTTCACGTACTGTTCTGACCTG 58.949 50.000 0.00 0.00 0.00 4.00
2972 3199 2.578786 TCACGTACTGTTCTGACCTGA 58.421 47.619 0.00 0.00 0.00 3.86
2973 3200 3.154710 TCACGTACTGTTCTGACCTGAT 58.845 45.455 0.00 0.00 0.00 2.90
2974 3201 3.572682 TCACGTACTGTTCTGACCTGATT 59.427 43.478 0.00 0.00 0.00 2.57
2975 3202 4.038763 TCACGTACTGTTCTGACCTGATTT 59.961 41.667 0.00 0.00 0.00 2.17
2976 3203 4.150627 CACGTACTGTTCTGACCTGATTTG 59.849 45.833 0.00 0.00 0.00 2.32
2977 3204 4.202223 ACGTACTGTTCTGACCTGATTTGT 60.202 41.667 0.00 0.00 0.00 2.83
2978 3205 4.386049 CGTACTGTTCTGACCTGATTTGTC 59.614 45.833 0.00 0.00 0.00 3.18
2979 3206 4.696479 ACTGTTCTGACCTGATTTGTCT 57.304 40.909 0.00 0.00 33.83 3.41
2980 3207 5.041191 ACTGTTCTGACCTGATTTGTCTT 57.959 39.130 0.00 0.00 33.83 3.01
2981 3208 5.440610 ACTGTTCTGACCTGATTTGTCTTT 58.559 37.500 0.00 0.00 33.83 2.52
2982 3209 5.888161 ACTGTTCTGACCTGATTTGTCTTTT 59.112 36.000 0.00 0.00 33.83 2.27
2983 3210 6.378280 ACTGTTCTGACCTGATTTGTCTTTTT 59.622 34.615 0.00 0.00 33.83 1.94
3004 3231 7.510549 TTTTTGCTGAGAGCTACTTAAATGT 57.489 32.000 0.00 0.00 42.97 2.71
3005 3232 7.510549 TTTTGCTGAGAGCTACTTAAATGTT 57.489 32.000 0.00 0.00 42.97 2.71
3006 3233 6.727824 TTGCTGAGAGCTACTTAAATGTTC 57.272 37.500 0.00 0.00 42.97 3.18
3007 3234 5.793817 TGCTGAGAGCTACTTAAATGTTCA 58.206 37.500 0.00 0.00 42.97 3.18
3008 3235 6.230472 TGCTGAGAGCTACTTAAATGTTCAA 58.770 36.000 0.00 0.00 42.97 2.69
3009 3236 6.710295 TGCTGAGAGCTACTTAAATGTTCAAA 59.290 34.615 0.00 0.00 42.97 2.69
3010 3237 7.391554 TGCTGAGAGCTACTTAAATGTTCAAAT 59.608 33.333 0.00 0.00 42.97 2.32
3011 3238 7.695618 GCTGAGAGCTACTTAAATGTTCAAATG 59.304 37.037 0.00 0.00 38.45 2.32
3012 3239 8.846943 TGAGAGCTACTTAAATGTTCAAATGA 57.153 30.769 0.00 0.00 0.00 2.57
3013 3240 9.453572 TGAGAGCTACTTAAATGTTCAAATGAT 57.546 29.630 0.00 0.00 0.00 2.45
3014 3241 9.928236 GAGAGCTACTTAAATGTTCAAATGATC 57.072 33.333 0.00 0.00 0.00 2.92
3015 3242 9.678260 AGAGCTACTTAAATGTTCAAATGATCT 57.322 29.630 0.00 0.00 0.00 2.75
3016 3243 9.713740 GAGCTACTTAAATGTTCAAATGATCTG 57.286 33.333 0.00 0.00 0.00 2.90
3017 3244 9.453572 AGCTACTTAAATGTTCAAATGATCTGA 57.546 29.630 0.00 0.00 0.00 3.27
3025 3252 9.781633 AAATGTTCAAATGATCTGAAAATTGGA 57.218 25.926 10.70 0.00 38.99 3.53
3026 3253 8.997621 ATGTTCAAATGATCTGAAAATTGGAG 57.002 30.769 0.00 0.00 34.68 3.86
3027 3254 6.869913 TGTTCAAATGATCTGAAAATTGGAGC 59.130 34.615 0.00 0.00 34.68 4.70
3028 3255 5.643664 TCAAATGATCTGAAAATTGGAGCG 58.356 37.500 0.00 0.00 0.00 5.03
3029 3256 5.415389 TCAAATGATCTGAAAATTGGAGCGA 59.585 36.000 0.00 0.00 0.00 4.93
3030 3257 5.902613 AATGATCTGAAAATTGGAGCGAA 57.097 34.783 0.00 0.00 0.00 4.70
3031 3258 4.685169 TGATCTGAAAATTGGAGCGAAC 57.315 40.909 0.00 0.00 0.00 3.95
3032 3259 3.440173 TGATCTGAAAATTGGAGCGAACC 59.560 43.478 0.00 0.00 0.00 3.62
3033 3260 3.140325 TCTGAAAATTGGAGCGAACCT 57.860 42.857 0.00 0.00 0.00 3.50
3034 3261 3.074412 TCTGAAAATTGGAGCGAACCTC 58.926 45.455 0.00 0.00 39.98 3.85
3035 3262 2.813754 CTGAAAATTGGAGCGAACCTCA 59.186 45.455 0.00 0.00 42.62 3.86
3036 3263 3.420893 TGAAAATTGGAGCGAACCTCAT 58.579 40.909 0.00 0.00 42.62 2.90
3037 3264 3.191162 TGAAAATTGGAGCGAACCTCATG 59.809 43.478 0.00 0.00 42.62 3.07
3038 3265 1.098050 AATTGGAGCGAACCTCATGC 58.902 50.000 0.00 0.00 42.62 4.06
3039 3266 0.035152 ATTGGAGCGAACCTCATGCA 60.035 50.000 0.00 0.00 42.62 3.96
3040 3267 0.035152 TTGGAGCGAACCTCATGCAT 60.035 50.000 0.00 0.00 42.62 3.96
3041 3268 0.462581 TGGAGCGAACCTCATGCATC 60.463 55.000 0.00 0.00 42.62 3.91
3042 3269 0.462581 GGAGCGAACCTCATGCATCA 60.463 55.000 0.00 0.00 42.62 3.07
3043 3270 1.372582 GAGCGAACCTCATGCATCAA 58.627 50.000 0.00 0.00 40.45 2.57
3044 3271 1.739466 GAGCGAACCTCATGCATCAAA 59.261 47.619 0.00 0.00 40.45 2.69
3045 3272 2.357009 GAGCGAACCTCATGCATCAAAT 59.643 45.455 0.00 0.00 40.45 2.32
3046 3273 2.756760 AGCGAACCTCATGCATCAAATT 59.243 40.909 0.00 0.00 0.00 1.82
3047 3274 3.947196 AGCGAACCTCATGCATCAAATTA 59.053 39.130 0.00 0.00 0.00 1.40
3048 3275 4.581824 AGCGAACCTCATGCATCAAATTAT 59.418 37.500 0.00 0.00 0.00 1.28
3049 3276 4.913924 GCGAACCTCATGCATCAAATTATC 59.086 41.667 0.00 0.00 0.00 1.75
3050 3277 5.278169 GCGAACCTCATGCATCAAATTATCT 60.278 40.000 0.00 0.00 0.00 1.98
3051 3278 6.073058 GCGAACCTCATGCATCAAATTATCTA 60.073 38.462 0.00 0.00 0.00 1.98
3052 3279 7.293745 CGAACCTCATGCATCAAATTATCTAC 58.706 38.462 0.00 0.00 0.00 2.59
3053 3280 7.172190 CGAACCTCATGCATCAAATTATCTACT 59.828 37.037 0.00 0.00 0.00 2.57
3054 3281 9.494271 GAACCTCATGCATCAAATTATCTACTA 57.506 33.333 0.00 0.00 0.00 1.82
3055 3282 8.839310 ACCTCATGCATCAAATTATCTACTAC 57.161 34.615 0.00 0.00 0.00 2.73
3056 3283 8.432013 ACCTCATGCATCAAATTATCTACTACA 58.568 33.333 0.00 0.00 0.00 2.74
3057 3284 8.715998 CCTCATGCATCAAATTATCTACTACAC 58.284 37.037 0.00 0.00 0.00 2.90
3058 3285 9.264719 CTCATGCATCAAATTATCTACTACACA 57.735 33.333 0.00 0.00 0.00 3.72
3059 3286 9.612066 TCATGCATCAAATTATCTACTACACAA 57.388 29.630 0.00 0.00 0.00 3.33
3124 3351 4.988744 TTTTTGTCCGGGTGCAGA 57.011 50.000 0.00 0.00 0.00 4.26
3125 3352 3.430473 TTTTTGTCCGGGTGCAGAT 57.570 47.368 0.00 0.00 0.00 2.90
3126 3353 0.958091 TTTTTGTCCGGGTGCAGATG 59.042 50.000 0.00 0.00 0.00 2.90
3127 3354 0.109532 TTTTGTCCGGGTGCAGATGA 59.890 50.000 0.00 0.00 0.00 2.92
3128 3355 0.321564 TTTGTCCGGGTGCAGATGAG 60.322 55.000 0.00 0.00 0.00 2.90
3129 3356 2.512515 GTCCGGGTGCAGATGAGC 60.513 66.667 0.00 0.00 0.00 4.26
3130 3357 3.785859 TCCGGGTGCAGATGAGCC 61.786 66.667 0.00 0.00 0.00 4.70
3131 3358 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
3132 3359 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
3133 3360 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
3134 3361 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
3135 3362 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
3136 3363 3.332385 TGCAGATGAGCCTGGGCA 61.332 61.111 14.39 0.00 44.88 5.36
3137 3364 2.827642 GCAGATGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
3152 3379 4.072088 CACCGAAACGCCGCACTC 62.072 66.667 0.00 0.00 0.00 3.51
3153 3380 4.595538 ACCGAAACGCCGCACTCA 62.596 61.111 0.00 0.00 0.00 3.41
3154 3381 3.777925 CCGAAACGCCGCACTCAG 61.778 66.667 0.00 0.00 0.00 3.35
3155 3382 3.777925 CGAAACGCCGCACTCAGG 61.778 66.667 0.00 0.00 0.00 3.86
3156 3383 2.665185 GAAACGCCGCACTCAGGT 60.665 61.111 0.00 0.00 0.00 4.00
3224 3451 6.836007 AGGCCTTTATTTGGAATTCCTTCTAG 59.164 38.462 24.73 13.53 36.82 2.43
3261 3488 3.626930 TGCTTTTTGTGTGGAGGTTAGT 58.373 40.909 0.00 0.00 0.00 2.24
3269 3496 6.488769 TTGTGTGGAGGTTAGTTTCTTCTA 57.511 37.500 0.00 0.00 0.00 2.10
3290 3517 8.445275 TTCTATACTTTTTGTTCTGCTTGTCA 57.555 30.769 0.00 0.00 0.00 3.58
3334 3561 6.660949 CCATTCTGGTGGACTTTTCTTAATCT 59.339 38.462 0.00 0.00 42.02 2.40
3337 3564 9.981460 ATTCTGGTGGACTTTTCTTAATCTAAT 57.019 29.630 0.00 0.00 0.00 1.73
3406 3649 2.900273 TGCTATCACCGGGCACTC 59.100 61.111 6.32 0.00 0.00 3.51
3464 3708 4.530161 CACCCAGGTTTGATATCCCAAAAA 59.470 41.667 0.00 0.00 37.72 1.94
3467 3711 6.274436 ACCCAGGTTTGATATCCCAAAAATTT 59.726 34.615 0.00 0.00 37.72 1.82
3586 3830 7.839907 TCTGAAATTTTGGGATATCAAACCTG 58.160 34.615 4.83 0.00 36.49 4.00
3629 3873 3.824001 TCAGTTTCATGGGGAAATGGA 57.176 42.857 0.00 0.00 46.55 3.41
3631 3875 4.280819 TCAGTTTCATGGGGAAATGGATC 58.719 43.478 0.00 0.00 46.55 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.662961 TGTCGTGGAGGCTGTGCG 62.663 66.667 0.00 0.00 0.00 5.34
6 7 3.044305 GTGTCGTGGAGGCTGTGC 61.044 66.667 0.00 0.00 0.00 4.57
7 8 2.357517 GGTGTCGTGGAGGCTGTG 60.358 66.667 0.00 0.00 0.00 3.66
8 9 3.991051 CGGTGTCGTGGAGGCTGT 61.991 66.667 0.00 0.00 0.00 4.40
9 10 3.680786 TCGGTGTCGTGGAGGCTG 61.681 66.667 0.00 0.00 37.69 4.85
10 11 3.681835 GTCGGTGTCGTGGAGGCT 61.682 66.667 0.00 0.00 37.69 4.58
12 13 3.324099 CTCGTCGGTGTCGTGGAGG 62.324 68.421 0.00 0.00 35.16 4.30
13 14 2.176055 CTCGTCGGTGTCGTGGAG 59.824 66.667 0.00 0.00 37.69 3.86
14 15 4.034258 GCTCGTCGGTGTCGTGGA 62.034 66.667 0.00 0.00 37.69 4.02
76 77 2.779951 TTCTGGACGATGGTGTGCCG 62.780 60.000 0.00 0.00 37.67 5.69
77 78 1.003839 TTCTGGACGATGGTGTGCC 60.004 57.895 0.00 0.00 0.00 5.01
78 79 1.639298 GCTTCTGGACGATGGTGTGC 61.639 60.000 0.00 0.00 0.00 4.57
79 80 0.036952 AGCTTCTGGACGATGGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
80 81 0.036952 CAGCTTCTGGACGATGGTGT 60.037 55.000 0.00 0.00 39.25 4.16
81 82 2.759783 CAGCTTCTGGACGATGGTG 58.240 57.895 0.00 0.00 38.42 4.17
91 92 1.101331 GCATTTCTCCCCAGCTTCTG 58.899 55.000 0.00 0.00 0.00 3.02
92 93 0.033699 GGCATTTCTCCCCAGCTTCT 60.034 55.000 0.00 0.00 0.00 2.85
93 94 1.379642 CGGCATTTCTCCCCAGCTTC 61.380 60.000 0.00 0.00 0.00 3.86
94 95 1.379044 CGGCATTTCTCCCCAGCTT 60.379 57.895 0.00 0.00 0.00 3.74
95 96 2.273449 CGGCATTTCTCCCCAGCT 59.727 61.111 0.00 0.00 0.00 4.24
96 97 2.830370 CCGGCATTTCTCCCCAGC 60.830 66.667 0.00 0.00 0.00 4.85
97 98 1.452108 GTCCGGCATTTCTCCCCAG 60.452 63.158 0.00 0.00 0.00 4.45
98 99 1.923395 AGTCCGGCATTTCTCCCCA 60.923 57.895 0.00 0.00 0.00 4.96
99 100 1.452108 CAGTCCGGCATTTCTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
100 101 1.452108 CCAGTCCGGCATTTCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
101 102 0.744771 GTCCAGTCCGGCATTTCTCC 60.745 60.000 0.00 0.00 33.14 3.71
102 103 0.250513 AGTCCAGTCCGGCATTTCTC 59.749 55.000 0.00 0.00 33.14 2.87
103 104 0.250513 GAGTCCAGTCCGGCATTTCT 59.749 55.000 0.00 0.00 33.14 2.52
104 105 0.250513 AGAGTCCAGTCCGGCATTTC 59.749 55.000 0.00 0.00 33.14 2.17
105 106 0.036010 CAGAGTCCAGTCCGGCATTT 60.036 55.000 0.00 0.00 33.14 2.32
106 107 1.599047 CAGAGTCCAGTCCGGCATT 59.401 57.895 0.00 0.00 33.14 3.56
107 108 2.362369 CCAGAGTCCAGTCCGGCAT 61.362 63.158 0.00 0.00 33.14 4.40
108 109 2.997315 CCAGAGTCCAGTCCGGCA 60.997 66.667 0.00 0.00 33.14 5.69
109 110 3.775654 CCCAGAGTCCAGTCCGGC 61.776 72.222 0.00 0.00 33.14 6.13
110 111 2.037367 TCCCAGAGTCCAGTCCGG 59.963 66.667 0.00 0.00 0.00 5.14
111 112 2.701780 CGTCCCAGAGTCCAGTCCG 61.702 68.421 0.00 0.00 0.00 4.79
112 113 3.007973 GCGTCCCAGAGTCCAGTCC 62.008 68.421 0.00 0.00 0.00 3.85
113 114 2.574399 GCGTCCCAGAGTCCAGTC 59.426 66.667 0.00 0.00 0.00 3.51
114 115 3.374402 CGCGTCCCAGAGTCCAGT 61.374 66.667 0.00 0.00 0.00 4.00
115 116 4.803426 GCGCGTCCCAGAGTCCAG 62.803 72.222 8.43 0.00 0.00 3.86
132 133 3.883744 GAGGTGGTGGAGGTGCGTG 62.884 68.421 0.00 0.00 0.00 5.34
133 134 3.626924 GAGGTGGTGGAGGTGCGT 61.627 66.667 0.00 0.00 0.00 5.24
134 135 2.859273 GATGAGGTGGTGGAGGTGCG 62.859 65.000 0.00 0.00 0.00 5.34
135 136 1.078143 GATGAGGTGGTGGAGGTGC 60.078 63.158 0.00 0.00 0.00 5.01
136 137 1.200760 TGGATGAGGTGGTGGAGGTG 61.201 60.000 0.00 0.00 0.00 4.00
137 138 1.160870 TGGATGAGGTGGTGGAGGT 59.839 57.895 0.00 0.00 0.00 3.85
138 139 1.200760 TGTGGATGAGGTGGTGGAGG 61.201 60.000 0.00 0.00 0.00 4.30
139 140 0.036010 GTGTGGATGAGGTGGTGGAG 60.036 60.000 0.00 0.00 0.00 3.86
140 141 1.488705 GGTGTGGATGAGGTGGTGGA 61.489 60.000 0.00 0.00 0.00 4.02
141 142 1.002134 GGTGTGGATGAGGTGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
142 143 0.606401 GTGGTGTGGATGAGGTGGTG 60.606 60.000 0.00 0.00 0.00 4.17
143 144 1.761174 GTGGTGTGGATGAGGTGGT 59.239 57.895 0.00 0.00 0.00 4.16
144 145 1.002134 GGTGGTGTGGATGAGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
145 146 0.321919 CTGGTGGTGTGGATGAGGTG 60.322 60.000 0.00 0.00 0.00 4.00
146 147 2.069776 CTGGTGGTGTGGATGAGGT 58.930 57.895 0.00 0.00 0.00 3.85
147 148 1.377725 GCTGGTGGTGTGGATGAGG 60.378 63.158 0.00 0.00 0.00 3.86
148 149 0.957395 GTGCTGGTGGTGTGGATGAG 60.957 60.000 0.00 0.00 0.00 2.90
149 150 1.073025 GTGCTGGTGGTGTGGATGA 59.927 57.895 0.00 0.00 0.00 2.92
150 151 1.073722 AGTGCTGGTGGTGTGGATG 59.926 57.895 0.00 0.00 0.00 3.51
151 152 1.073722 CAGTGCTGGTGGTGTGGAT 59.926 57.895 0.00 0.00 0.00 3.41
152 153 2.510411 CAGTGCTGGTGGTGTGGA 59.490 61.111 0.00 0.00 0.00 4.02
153 154 3.289834 GCAGTGCTGGTGGTGTGG 61.290 66.667 8.18 0.00 0.00 4.17
154 155 3.289834 GGCAGTGCTGGTGGTGTG 61.290 66.667 16.11 0.00 0.00 3.82
155 156 4.586235 GGGCAGTGCTGGTGGTGT 62.586 66.667 16.11 0.00 0.00 4.16
156 157 3.873679 ATGGGCAGTGCTGGTGGTG 62.874 63.158 16.11 0.00 0.00 4.17
157 158 3.150903 AATGGGCAGTGCTGGTGGT 62.151 57.895 16.11 0.00 0.00 4.16
158 159 2.283388 AATGGGCAGTGCTGGTGG 60.283 61.111 16.11 0.00 0.00 4.61
159 160 0.968901 ATCAATGGGCAGTGCTGGTG 60.969 55.000 16.11 8.50 0.00 4.17
160 161 0.682209 GATCAATGGGCAGTGCTGGT 60.682 55.000 16.11 0.51 0.00 4.00
161 162 1.389609 GGATCAATGGGCAGTGCTGG 61.390 60.000 16.11 0.53 0.00 4.85
162 163 0.681887 TGGATCAATGGGCAGTGCTG 60.682 55.000 16.11 5.34 0.00 4.41
163 164 0.682209 GTGGATCAATGGGCAGTGCT 60.682 55.000 16.11 0.00 0.00 4.40
164 165 1.811860 GTGGATCAATGGGCAGTGC 59.188 57.895 6.55 6.55 0.00 4.40
165 166 1.378882 CCGTGGATCAATGGGCAGTG 61.379 60.000 0.00 0.00 0.00 3.66
166 167 1.077501 CCGTGGATCAATGGGCAGT 60.078 57.895 0.00 0.00 0.00 4.40
167 168 2.484062 GCCGTGGATCAATGGGCAG 61.484 63.158 10.53 0.00 43.23 4.85
168 169 2.440065 GCCGTGGATCAATGGGCA 60.440 61.111 10.53 0.00 43.23 5.36
169 170 2.440065 TGCCGTGGATCAATGGGC 60.440 61.111 10.53 9.12 44.00 5.36
170 171 2.484062 GCTGCCGTGGATCAATGGG 61.484 63.158 10.53 0.00 0.00 4.00
171 172 1.314534 TTGCTGCCGTGGATCAATGG 61.315 55.000 3.66 3.66 0.00 3.16
172 173 0.179156 GTTGCTGCCGTGGATCAATG 60.179 55.000 0.00 0.00 0.00 2.82
173 174 1.647545 CGTTGCTGCCGTGGATCAAT 61.648 55.000 0.00 0.00 0.00 2.57
174 175 2.324330 CGTTGCTGCCGTGGATCAA 61.324 57.895 0.00 0.00 0.00 2.57
175 176 2.741985 CGTTGCTGCCGTGGATCA 60.742 61.111 0.00 0.00 0.00 2.92
176 177 3.499737 CCGTTGCTGCCGTGGATC 61.500 66.667 0.00 0.00 0.00 3.36
237 238 1.021390 CATGCAGGACGGTTCTGGTC 61.021 60.000 17.86 3.04 33.16 4.02
238 239 1.003355 CATGCAGGACGGTTCTGGT 60.003 57.895 17.86 0.00 33.16 4.00
239 240 0.107508 ATCATGCAGGACGGTTCTGG 60.108 55.000 17.86 1.92 33.16 3.86
240 241 1.293924 GATCATGCAGGACGGTTCTG 58.706 55.000 12.25 12.25 35.49 3.02
241 242 0.179000 GGATCATGCAGGACGGTTCT 59.821 55.000 1.71 0.00 0.00 3.01
242 243 1.154205 CGGATCATGCAGGACGGTTC 61.154 60.000 1.71 0.00 0.00 3.62
243 244 1.153369 CGGATCATGCAGGACGGTT 60.153 57.895 1.71 0.00 0.00 4.44
244 245 2.501128 CGGATCATGCAGGACGGT 59.499 61.111 1.71 0.00 0.00 4.83
245 246 2.969238 GCGGATCATGCAGGACGG 60.969 66.667 1.71 3.82 0.00 4.79
246 247 2.969238 GGCGGATCATGCAGGACG 60.969 66.667 1.71 4.94 0.00 4.79
247 248 2.592861 GGGCGGATCATGCAGGAC 60.593 66.667 1.71 0.00 0.00 3.85
248 249 4.240103 CGGGCGGATCATGCAGGA 62.240 66.667 2.36 2.36 0.00 3.86
249 250 3.755526 TTCGGGCGGATCATGCAGG 62.756 63.158 10.82 0.00 0.00 4.85
250 251 2.203056 TTCGGGCGGATCATGCAG 60.203 61.111 10.82 4.95 0.00 4.41
251 252 2.203056 CTTCGGGCGGATCATGCA 60.203 61.111 10.82 0.00 0.00 3.96
252 253 2.974698 CCTTCGGGCGGATCATGC 60.975 66.667 0.00 0.00 0.00 4.06
253 254 1.595382 GTCCTTCGGGCGGATCATG 60.595 63.158 0.00 0.00 32.25 3.07
254 255 2.822399 GTCCTTCGGGCGGATCAT 59.178 61.111 0.00 0.00 32.25 2.45
255 256 3.833645 CGTCCTTCGGGCGGATCA 61.834 66.667 0.00 0.00 35.71 2.92
256 257 2.955751 CTTCGTCCTTCGGGCGGATC 62.956 65.000 7.08 0.00 40.32 3.36
257 258 3.072468 TTCGTCCTTCGGGCGGAT 61.072 61.111 7.08 0.00 40.32 4.18
258 259 3.755628 CTTCGTCCTTCGGGCGGA 61.756 66.667 7.08 0.00 40.32 5.54
262 263 4.468689 GGGGCTTCGTCCTTCGGG 62.469 72.222 0.00 0.00 40.32 5.14
263 264 4.814294 CGGGGCTTCGTCCTTCGG 62.814 72.222 0.00 0.00 40.32 4.30
277 278 4.704833 CTGTGTGGTGGAGGCGGG 62.705 72.222 0.00 0.00 0.00 6.13
302 303 4.451150 TGGGCGCTCATCGGTGTC 62.451 66.667 5.44 0.00 38.94 3.67
303 304 4.760047 GTGGGCGCTCATCGGTGT 62.760 66.667 15.93 0.00 38.94 4.16
372 373 2.011122 TTCTTCTCCCCGTCTGTCTT 57.989 50.000 0.00 0.00 0.00 3.01
459 460 4.082523 CGCCTCCGCCCTTCTTCA 62.083 66.667 0.00 0.00 0.00 3.02
485 486 2.285668 CAGGCCTCTTCCTCCCCA 60.286 66.667 0.00 0.00 33.25 4.96
522 532 4.610714 GAATCCGCCCTCCCGCTC 62.611 72.222 0.00 0.00 0.00 5.03
564 574 5.015178 AGGACAAATCATTTGGGAGGTAGAA 59.985 40.000 14.70 0.00 44.81 2.10
565 575 4.540099 AGGACAAATCATTTGGGAGGTAGA 59.460 41.667 14.70 0.00 44.81 2.59
567 577 4.946160 AGGACAAATCATTTGGGAGGTA 57.054 40.909 14.70 0.00 44.81 3.08
589 599 4.408596 ACAAATGTCATTTCTTGGGTTGGT 59.591 37.500 7.87 0.00 0.00 3.67
594 604 3.674753 GCGAACAAATGTCATTTCTTGGG 59.325 43.478 7.87 0.00 0.00 4.12
632 642 1.674441 CCGTCGTATGCTAGGTTCTCA 59.326 52.381 0.00 0.00 0.00 3.27
648 658 2.084546 CAATCAAAACCCTCCTCCGTC 58.915 52.381 0.00 0.00 0.00 4.79
650 660 1.004277 TCCAATCAAAACCCTCCTCCG 59.996 52.381 0.00 0.00 0.00 4.63
673 683 2.046023 TCACGGCTGCAATCCCTG 60.046 61.111 0.50 0.00 0.00 4.45
674 684 2.270205 CTCACGGCTGCAATCCCT 59.730 61.111 0.50 0.00 0.00 4.20
680 690 4.007644 CTGTCCCTCACGGCTGCA 62.008 66.667 0.50 0.00 0.00 4.41
684 694 4.436998 CCGACTGTCCCTCACGGC 62.437 72.222 1.55 0.00 37.32 5.68
686 696 2.878429 CTCCGACTGTCCCTCACG 59.122 66.667 1.55 0.00 0.00 4.35
715 725 2.762043 GCCTTCGCCTCCTCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
717 727 0.813210 CAATGCCTTCGCCTCCTCTC 60.813 60.000 0.00 0.00 0.00 3.20
733 743 0.978146 AGAGCCGGCTAGACACCAAT 60.978 55.000 32.97 2.04 0.00 3.16
735 745 2.037367 AGAGCCGGCTAGACACCA 59.963 61.111 32.97 0.00 0.00 4.17
737 747 1.435515 CTGAGAGCCGGCTAGACAC 59.564 63.158 32.97 17.34 0.00 3.67
760 770 6.284891 ACTACTACTATTACCGCCAAAACA 57.715 37.500 0.00 0.00 0.00 2.83
762 772 6.035843 CGAACTACTACTATTACCGCCAAAA 58.964 40.000 0.00 0.00 0.00 2.44
764 774 4.036734 CCGAACTACTACTATTACCGCCAA 59.963 45.833 0.00 0.00 0.00 4.52
860 876 9.189723 GTGATGATTTCTTTTTCAGAGAAAAGG 57.810 33.333 7.71 7.71 43.87 3.11
861 877 9.740239 TGTGATGATTTCTTTTTCAGAGAAAAG 57.260 29.630 5.24 4.22 43.87 2.27
865 881 7.000472 AGGTGTGATGATTTCTTTTTCAGAGA 59.000 34.615 0.00 0.00 31.12 3.10
866 882 7.082602 CAGGTGTGATGATTTCTTTTTCAGAG 58.917 38.462 0.00 0.00 31.12 3.35
924 953 0.955178 TGGGTATGTGGTTTTGCACG 59.045 50.000 0.00 0.00 0.00 5.34
934 963 0.108329 GTCGTCCCTGTGGGTATGTG 60.108 60.000 2.25 0.00 44.74 3.21
940 969 1.191535 TATGAAGTCGTCCCTGTGGG 58.808 55.000 0.00 0.00 46.11 4.61
946 975 6.837471 ATAGGAGTATTATGAAGTCGTCCC 57.163 41.667 0.00 0.00 0.00 4.46
1033 1229 2.844839 GGCAGGCTATCCTCCGGT 60.845 66.667 0.00 0.00 41.93 5.28
1477 1675 3.097877 TGAGACAGTGCTAATATGCCG 57.902 47.619 0.00 0.00 0.00 5.69
1624 1822 5.277857 TCTAGCCTTATAGGTTCACAAGC 57.722 43.478 0.00 0.00 37.80 4.01
1637 1835 4.455533 CACAAGTTGCACATTCTAGCCTTA 59.544 41.667 1.81 0.00 0.00 2.69
1836 2034 2.080286 ACGTGTGGCAGTATGAGAAC 57.920 50.000 0.00 0.00 39.69 3.01
1845 2043 2.109538 CTGCACTGAACGTGTGGCAG 62.110 60.000 11.69 11.69 45.57 4.85
1890 2088 4.081862 ACATGGCAAATTCTGGATCTGTTG 60.082 41.667 0.00 0.00 0.00 3.33
1923 2121 0.394192 TTGGATAGCCATCAGCCTCG 59.606 55.000 0.00 0.00 45.46 4.63
1985 2183 4.263068 CCCGGATAGCTCTGTCCAAATTAT 60.263 45.833 0.73 0.00 40.43 1.28
2043 2241 0.250166 CATGGAGGATGCGCAGATCA 60.250 55.000 18.32 10.08 0.00 2.92
2208 2406 1.610038 CAGCTTTGCAAGACCACATCA 59.390 47.619 0.00 0.00 0.00 3.07
2393 2591 3.688185 GCAGATATACCATGTGCCATCTG 59.312 47.826 15.19 15.19 41.37 2.90
2501 2708 5.250543 CCAGTCATATATAACCCCACATGGA 59.749 44.000 0.00 0.00 37.39 3.41
2610 2831 3.795623 ATTCACAGCAAGGATCAATGC 57.204 42.857 12.61 12.61 42.87 3.56
2623 2844 7.085746 TGAAACATTTGACTGCATATTCACAG 58.914 34.615 0.00 0.00 39.86 3.66
2665 2886 1.304381 TCCCTGGCAGAACATTGGC 60.304 57.895 17.94 0.00 43.38 4.52
2717 2944 8.903820 ACCTGATTTCCAATATAAAGTTAGCAC 58.096 33.333 0.00 0.00 0.00 4.40
2736 2963 7.546358 TCAAAAATGAATTATCGCACCTGATT 58.454 30.769 0.00 0.00 0.00 2.57
2744 2971 4.681744 TGGGCTCAAAAATGAATTATCGC 58.318 39.130 0.00 0.00 0.00 4.58
2745 2972 5.284079 CCTGGGCTCAAAAATGAATTATCG 58.716 41.667 0.00 0.00 0.00 2.92
2746 2973 5.052481 GCCTGGGCTCAAAAATGAATTATC 58.948 41.667 4.12 0.00 38.26 1.75
2747 2974 5.027293 GCCTGGGCTCAAAAATGAATTAT 57.973 39.130 4.12 0.00 38.26 1.28
2748 2975 4.470334 GCCTGGGCTCAAAAATGAATTA 57.530 40.909 4.12 0.00 38.26 1.40
2749 2976 3.339253 GCCTGGGCTCAAAAATGAATT 57.661 42.857 4.12 0.00 38.26 2.17
2762 2989 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
2763 2990 2.124403 GGTGCAGATGAGCCTGGG 60.124 66.667 0.00 0.00 34.82 4.45
2764 2991 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
2765 2992 1.748122 GTGGGTGCAGATGAGCCTG 60.748 63.158 0.00 0.00 37.23 4.85
2766 2993 2.673523 GTGGGTGCAGATGAGCCT 59.326 61.111 0.00 0.00 31.85 4.58
2767 2994 2.821366 CGTGGGTGCAGATGAGCC 60.821 66.667 0.00 0.00 0.00 4.70
2768 2995 3.503363 GCGTGGGTGCAGATGAGC 61.503 66.667 0.00 0.00 34.15 4.26
2769 2996 2.104859 CAGCGTGGGTGCAGATGAG 61.105 63.158 0.00 0.00 37.31 2.90
2770 2997 2.046988 CAGCGTGGGTGCAGATGA 60.047 61.111 0.00 0.00 37.31 2.92
2771 2998 2.046988 TCAGCGTGGGTGCAGATG 60.047 61.111 0.00 0.00 37.31 2.90
2772 2999 2.046892 GTCAGCGTGGGTGCAGAT 60.047 61.111 0.00 0.00 37.31 2.90
2773 3000 4.662961 CGTCAGCGTGGGTGCAGA 62.663 66.667 0.00 0.00 37.31 4.26
2774 3001 4.662961 TCGTCAGCGTGGGTGCAG 62.663 66.667 0.00 0.00 39.49 4.41
2775 3002 3.741830 TTTCGTCAGCGTGGGTGCA 62.742 57.895 0.00 0.00 39.49 4.57
2776 3003 2.054140 TTTTTCGTCAGCGTGGGTGC 62.054 55.000 0.00 0.00 39.49 5.01
2777 3004 2.018544 TTTTTCGTCAGCGTGGGTG 58.981 52.632 0.00 0.00 39.49 4.61
2778 3005 4.544001 TTTTTCGTCAGCGTGGGT 57.456 50.000 0.00 0.00 39.49 4.51
2835 3062 9.729023 CGCATCAAATTATCTACCACATAAAAA 57.271 29.630 0.00 0.00 0.00 1.94
2836 3063 8.898761 ACGCATCAAATTATCTACCACATAAAA 58.101 29.630 0.00 0.00 0.00 1.52
2837 3064 8.341903 CACGCATCAAATTATCTACCACATAAA 58.658 33.333 0.00 0.00 0.00 1.40
2838 3065 7.713073 TCACGCATCAAATTATCTACCACATAA 59.287 33.333 0.00 0.00 0.00 1.90
2839 3066 7.213678 TCACGCATCAAATTATCTACCACATA 58.786 34.615 0.00 0.00 0.00 2.29
2840 3067 6.054941 TCACGCATCAAATTATCTACCACAT 58.945 36.000 0.00 0.00 0.00 3.21
2841 3068 5.423886 TCACGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
2842 3069 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
2843 3070 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
2844 3071 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
2845 3072 6.562270 CGAACCTCACGCATCAAATTATCTAC 60.562 42.308 0.00 0.00 0.00 2.59
2846 3073 5.462068 CGAACCTCACGCATCAAATTATCTA 59.538 40.000 0.00 0.00 0.00 1.98
2847 3074 4.271049 CGAACCTCACGCATCAAATTATCT 59.729 41.667 0.00 0.00 0.00 1.98
2848 3075 4.518217 CGAACCTCACGCATCAAATTATC 58.482 43.478 0.00 0.00 0.00 1.75
2849 3076 4.536364 CGAACCTCACGCATCAAATTAT 57.464 40.909 0.00 0.00 0.00 1.28
2851 3078 2.900122 CGAACCTCACGCATCAAATT 57.100 45.000 0.00 0.00 0.00 1.82
2860 3087 1.156736 AAATTGGAGCGAACCTCACG 58.843 50.000 0.00 0.00 42.62 4.35
2861 3088 2.552315 TGAAAATTGGAGCGAACCTCAC 59.448 45.455 0.00 0.00 42.62 3.51
2862 3089 2.857483 TGAAAATTGGAGCGAACCTCA 58.143 42.857 0.00 0.00 42.62 3.86
2863 3090 3.253432 ACTTGAAAATTGGAGCGAACCTC 59.747 43.478 0.00 0.00 39.98 3.85
2864 3091 3.222603 ACTTGAAAATTGGAGCGAACCT 58.777 40.909 0.00 0.00 0.00 3.50
2865 3092 3.004315 TGACTTGAAAATTGGAGCGAACC 59.996 43.478 0.00 0.00 0.00 3.62
2866 3093 4.223320 TGACTTGAAAATTGGAGCGAAC 57.777 40.909 0.00 0.00 0.00 3.95
2867 3094 5.452078 AATGACTTGAAAATTGGAGCGAA 57.548 34.783 0.00 0.00 0.00 4.70
2868 3095 5.221880 CAAATGACTTGAAAATTGGAGCGA 58.778 37.500 0.00 0.00 37.17 4.93
2869 3096 4.386652 CCAAATGACTTGAAAATTGGAGCG 59.613 41.667 0.00 0.00 39.69 5.03
2870 3097 5.540911 TCCAAATGACTTGAAAATTGGAGC 58.459 37.500 1.12 0.00 40.87 4.70
2871 3098 9.525409 GATATCCAAATGACTTGAAAATTGGAG 57.475 33.333 10.41 0.00 46.62 3.86
2873 3100 9.309516 CAGATATCCAAATGACTTGAAAATTGG 57.690 33.333 0.00 0.00 37.17 3.16
2876 3103 8.411683 GCTCAGATATCCAAATGACTTGAAAAT 58.588 33.333 0.00 0.00 37.17 1.82
2877 3104 7.394077 TGCTCAGATATCCAAATGACTTGAAAA 59.606 33.333 0.00 0.00 37.17 2.29
2878 3105 6.885918 TGCTCAGATATCCAAATGACTTGAAA 59.114 34.615 0.00 0.00 37.17 2.69
2879 3106 6.417258 TGCTCAGATATCCAAATGACTTGAA 58.583 36.000 0.00 0.00 37.17 2.69
2880 3107 5.993055 TGCTCAGATATCCAAATGACTTGA 58.007 37.500 0.00 0.00 37.17 3.02
2881 3108 5.277876 GCTGCTCAGATATCCAAATGACTTG 60.278 44.000 0.00 0.00 34.52 3.16
2882 3109 4.820716 GCTGCTCAGATATCCAAATGACTT 59.179 41.667 0.00 0.00 0.00 3.01
2883 3110 4.102838 AGCTGCTCAGATATCCAAATGACT 59.897 41.667 0.00 0.00 0.00 3.41
2884 3111 4.387598 AGCTGCTCAGATATCCAAATGAC 58.612 43.478 0.00 0.00 0.00 3.06
2885 3112 4.347292 AGAGCTGCTCAGATATCCAAATGA 59.653 41.667 29.49 0.00 32.06 2.57
2886 3113 4.643463 AGAGCTGCTCAGATATCCAAATG 58.357 43.478 29.49 0.00 32.06 2.32
2887 3114 4.561123 CGAGAGCTGCTCAGATATCCAAAT 60.561 45.833 29.49 5.90 44.15 2.32
2888 3115 3.243670 CGAGAGCTGCTCAGATATCCAAA 60.244 47.826 29.49 0.00 44.15 3.28
2889 3116 2.295629 CGAGAGCTGCTCAGATATCCAA 59.704 50.000 29.49 0.00 44.15 3.53
2890 3117 1.885233 CGAGAGCTGCTCAGATATCCA 59.115 52.381 29.49 0.00 44.15 3.41
2891 3118 1.202114 CCGAGAGCTGCTCAGATATCC 59.798 57.143 29.49 9.58 44.15 2.59
2892 3119 1.402720 GCCGAGAGCTGCTCAGATATC 60.403 57.143 29.49 17.18 44.15 1.63
2893 3120 0.602562 GCCGAGAGCTGCTCAGATAT 59.397 55.000 29.49 10.20 44.15 1.63
2894 3121 0.753111 TGCCGAGAGCTGCTCAGATA 60.753 55.000 29.49 12.91 44.15 1.98
2895 3122 1.611474 TTGCCGAGAGCTGCTCAGAT 61.611 55.000 29.49 10.97 44.15 2.90
2896 3123 1.820010 TTTGCCGAGAGCTGCTCAGA 61.820 55.000 29.49 7.15 44.15 3.27
2897 3124 0.952497 TTTTGCCGAGAGCTGCTCAG 60.952 55.000 29.49 21.79 44.15 3.35
2898 3125 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
2899 3126 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
2900 3127 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
2914 3141 7.654022 TTACAGACCCTGAATTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
2915 3142 7.654022 TTTACAGACCCTGAATTTGTCTTTT 57.346 32.000 0.45 0.00 37.25 2.27
2916 3143 7.654022 TTTTACAGACCCTGAATTTGTCTTT 57.346 32.000 0.45 0.00 37.25 2.52
2917 3144 7.654022 TTTTTACAGACCCTGAATTTGTCTT 57.346 32.000 0.45 0.00 37.25 3.01
2938 3165 5.876460 ACAGTACGTGAACAGTAACCTTTTT 59.124 36.000 0.00 0.00 0.00 1.94
2939 3166 5.422145 ACAGTACGTGAACAGTAACCTTTT 58.578 37.500 0.00 0.00 0.00 2.27
2940 3167 5.014808 ACAGTACGTGAACAGTAACCTTT 57.985 39.130 0.00 0.00 0.00 3.11
2941 3168 4.660789 ACAGTACGTGAACAGTAACCTT 57.339 40.909 0.00 0.00 0.00 3.50
2942 3169 4.340381 AGAACAGTACGTGAACAGTAACCT 59.660 41.667 0.00 0.00 0.00 3.50
2943 3170 4.443394 CAGAACAGTACGTGAACAGTAACC 59.557 45.833 0.00 0.00 0.00 2.85
2944 3171 5.172771 GTCAGAACAGTACGTGAACAGTAAC 59.827 44.000 0.00 0.00 0.00 2.50
2945 3172 5.276270 GTCAGAACAGTACGTGAACAGTAA 58.724 41.667 0.00 0.00 0.00 2.24
2946 3173 4.261322 GGTCAGAACAGTACGTGAACAGTA 60.261 45.833 0.00 0.00 0.00 2.74
2947 3174 3.490419 GGTCAGAACAGTACGTGAACAGT 60.490 47.826 0.00 0.00 0.00 3.55
2948 3175 3.050619 GGTCAGAACAGTACGTGAACAG 58.949 50.000 0.00 0.00 0.00 3.16
2949 3176 2.691526 AGGTCAGAACAGTACGTGAACA 59.308 45.455 0.00 0.00 0.00 3.18
2950 3177 3.050619 CAGGTCAGAACAGTACGTGAAC 58.949 50.000 0.00 0.00 32.24 3.18
2951 3178 2.953648 TCAGGTCAGAACAGTACGTGAA 59.046 45.455 0.00 0.00 35.70 3.18
2952 3179 2.578786 TCAGGTCAGAACAGTACGTGA 58.421 47.619 0.00 0.00 36.12 4.35
2953 3180 3.577649 ATCAGGTCAGAACAGTACGTG 57.422 47.619 0.00 0.00 0.00 4.49
2954 3181 4.202223 ACAAATCAGGTCAGAACAGTACGT 60.202 41.667 0.00 0.00 0.00 3.57
2955 3182 4.307432 ACAAATCAGGTCAGAACAGTACG 58.693 43.478 0.00 0.00 0.00 3.67
2956 3183 5.542779 AGACAAATCAGGTCAGAACAGTAC 58.457 41.667 0.00 0.00 37.74 2.73
2957 3184 5.808366 AGACAAATCAGGTCAGAACAGTA 57.192 39.130 0.00 0.00 37.74 2.74
2958 3185 4.696479 AGACAAATCAGGTCAGAACAGT 57.304 40.909 0.00 0.00 37.74 3.55
2959 3186 6.382869 AAAAGACAAATCAGGTCAGAACAG 57.617 37.500 0.00 0.00 37.74 3.16
2960 3187 6.773976 AAAAAGACAAATCAGGTCAGAACA 57.226 33.333 0.00 0.00 37.74 3.18
2980 3207 7.510549 ACATTTAAGTAGCTCTCAGCAAAAA 57.489 32.000 0.00 0.00 45.56 1.94
2981 3208 7.228507 TGAACATTTAAGTAGCTCTCAGCAAAA 59.771 33.333 0.00 0.00 45.56 2.44
2982 3209 6.710295 TGAACATTTAAGTAGCTCTCAGCAAA 59.290 34.615 0.00 0.00 45.56 3.68
2983 3210 6.230472 TGAACATTTAAGTAGCTCTCAGCAA 58.770 36.000 0.00 0.00 45.56 3.91
2984 3211 5.793817 TGAACATTTAAGTAGCTCTCAGCA 58.206 37.500 0.00 0.00 45.56 4.41
2985 3212 6.727824 TTGAACATTTAAGTAGCTCTCAGC 57.272 37.500 0.00 0.00 42.84 4.26
2986 3213 8.939929 TCATTTGAACATTTAAGTAGCTCTCAG 58.060 33.333 0.00 0.00 0.00 3.35
2987 3214 8.846943 TCATTTGAACATTTAAGTAGCTCTCA 57.153 30.769 0.00 0.00 0.00 3.27
2988 3215 9.928236 GATCATTTGAACATTTAAGTAGCTCTC 57.072 33.333 0.00 0.00 0.00 3.20
2989 3216 9.678260 AGATCATTTGAACATTTAAGTAGCTCT 57.322 29.630 0.00 0.00 0.00 4.09
2990 3217 9.713740 CAGATCATTTGAACATTTAAGTAGCTC 57.286 33.333 0.00 0.00 0.00 4.09
2991 3218 9.453572 TCAGATCATTTGAACATTTAAGTAGCT 57.546 29.630 0.00 0.00 0.00 3.32
2999 3226 9.781633 TCCAATTTTCAGATCATTTGAACATTT 57.218 25.926 0.59 0.00 34.46 2.32
3000 3227 9.431887 CTCCAATTTTCAGATCATTTGAACATT 57.568 29.630 0.00 0.00 36.11 2.71
3001 3228 7.548075 GCTCCAATTTTCAGATCATTTGAACAT 59.452 33.333 0.00 0.00 34.50 2.71
3002 3229 6.869913 GCTCCAATTTTCAGATCATTTGAACA 59.130 34.615 0.00 0.00 34.50 3.18
3003 3230 6.034256 CGCTCCAATTTTCAGATCATTTGAAC 59.966 38.462 0.00 0.00 34.50 3.18
3004 3231 6.072008 TCGCTCCAATTTTCAGATCATTTGAA 60.072 34.615 0.00 0.00 33.00 2.69
3005 3232 5.415389 TCGCTCCAATTTTCAGATCATTTGA 59.585 36.000 0.00 0.00 0.00 2.69
3006 3233 5.643664 TCGCTCCAATTTTCAGATCATTTG 58.356 37.500 0.00 0.00 0.00 2.32
3007 3234 5.902613 TCGCTCCAATTTTCAGATCATTT 57.097 34.783 0.00 0.00 0.00 2.32
3008 3235 5.393461 GGTTCGCTCCAATTTTCAGATCATT 60.393 40.000 0.00 0.00 0.00 2.57
3009 3236 4.096984 GGTTCGCTCCAATTTTCAGATCAT 59.903 41.667 0.00 0.00 0.00 2.45
3010 3237 3.440173 GGTTCGCTCCAATTTTCAGATCA 59.560 43.478 0.00 0.00 0.00 2.92
3011 3238 3.691609 AGGTTCGCTCCAATTTTCAGATC 59.308 43.478 0.00 0.00 0.00 2.75
3012 3239 3.690460 AGGTTCGCTCCAATTTTCAGAT 58.310 40.909 0.00 0.00 0.00 2.90
3013 3240 3.074412 GAGGTTCGCTCCAATTTTCAGA 58.926 45.455 0.00 0.00 0.00 3.27
3014 3241 2.813754 TGAGGTTCGCTCCAATTTTCAG 59.186 45.455 0.00 0.00 0.00 3.02
3015 3242 2.857483 TGAGGTTCGCTCCAATTTTCA 58.143 42.857 0.00 0.00 0.00 2.69
3016 3243 3.762779 CATGAGGTTCGCTCCAATTTTC 58.237 45.455 0.00 0.00 0.00 2.29
3017 3244 2.094545 GCATGAGGTTCGCTCCAATTTT 60.095 45.455 0.00 0.00 0.00 1.82
3018 3245 1.474077 GCATGAGGTTCGCTCCAATTT 59.526 47.619 0.00 0.00 0.00 1.82
3019 3246 1.098050 GCATGAGGTTCGCTCCAATT 58.902 50.000 0.00 0.00 0.00 2.32
3020 3247 0.035152 TGCATGAGGTTCGCTCCAAT 60.035 50.000 0.00 0.00 0.00 3.16
3021 3248 0.035152 ATGCATGAGGTTCGCTCCAA 60.035 50.000 0.00 0.00 0.00 3.53
3022 3249 0.462581 GATGCATGAGGTTCGCTCCA 60.463 55.000 2.46 0.00 0.00 3.86
3023 3250 0.462581 TGATGCATGAGGTTCGCTCC 60.463 55.000 2.46 0.00 0.00 4.70
3024 3251 1.372582 TTGATGCATGAGGTTCGCTC 58.627 50.000 2.46 0.00 0.00 5.03
3025 3252 1.825090 TTTGATGCATGAGGTTCGCT 58.175 45.000 2.46 0.00 0.00 4.93
3026 3253 2.857592 ATTTGATGCATGAGGTTCGC 57.142 45.000 2.46 0.00 0.00 4.70
3027 3254 6.309712 AGATAATTTGATGCATGAGGTTCG 57.690 37.500 2.46 0.00 0.00 3.95
3028 3255 8.388484 AGTAGATAATTTGATGCATGAGGTTC 57.612 34.615 2.46 0.00 0.00 3.62
3029 3256 9.277783 GTAGTAGATAATTTGATGCATGAGGTT 57.722 33.333 2.46 0.00 0.00 3.50
3030 3257 8.432013 TGTAGTAGATAATTTGATGCATGAGGT 58.568 33.333 2.46 0.00 0.00 3.85
3031 3258 8.715998 GTGTAGTAGATAATTTGATGCATGAGG 58.284 37.037 2.46 0.00 0.00 3.86
3032 3259 9.264719 TGTGTAGTAGATAATTTGATGCATGAG 57.735 33.333 2.46 0.00 0.00 2.90
3033 3260 9.612066 TTGTGTAGTAGATAATTTGATGCATGA 57.388 29.630 2.46 0.00 0.00 3.07
3107 3334 0.958091 CATCTGCACCCGGACAAAAA 59.042 50.000 0.73 0.00 0.00 1.94
3108 3335 0.109532 TCATCTGCACCCGGACAAAA 59.890 50.000 0.73 0.00 0.00 2.44
3109 3336 0.321564 CTCATCTGCACCCGGACAAA 60.322 55.000 0.73 0.00 0.00 2.83
3110 3337 1.296392 CTCATCTGCACCCGGACAA 59.704 57.895 0.73 0.00 0.00 3.18
3111 3338 2.981302 CTCATCTGCACCCGGACA 59.019 61.111 0.73 0.00 0.00 4.02
3112 3339 2.512515 GCTCATCTGCACCCGGAC 60.513 66.667 0.73 0.00 0.00 4.79
3113 3340 3.785859 GGCTCATCTGCACCCGGA 61.786 66.667 0.73 0.00 34.04 5.14
3114 3341 3.790437 AGGCTCATCTGCACCCGG 61.790 66.667 0.00 0.00 34.04 5.73
3115 3342 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
3116 3343 2.124403 CCAGGCTCATCTGCACCC 60.124 66.667 0.00 0.00 33.64 4.61
3117 3344 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
3118 3345 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
3119 3346 3.332385 TGCCCAGGCTCATCTGCA 61.332 61.111 10.58 0.00 42.51 4.41
3120 3347 2.827642 GTGCCCAGGCTCATCTGC 60.828 66.667 10.58 0.00 42.51 4.26
3121 3348 2.124403 GGTGCCCAGGCTCATCTG 60.124 66.667 10.58 0.00 42.51 2.90
3122 3349 3.790437 CGGTGCCCAGGCTCATCT 61.790 66.667 10.58 0.00 42.51 2.90
3123 3350 2.819984 TTTCGGTGCCCAGGCTCATC 62.820 60.000 10.58 0.00 42.51 2.92
3124 3351 2.905996 TTTCGGTGCCCAGGCTCAT 61.906 57.895 10.58 0.00 42.51 2.90
3125 3352 3.565214 TTTCGGTGCCCAGGCTCA 61.565 61.111 10.58 0.00 42.51 4.26
3126 3353 3.056328 GTTTCGGTGCCCAGGCTC 61.056 66.667 10.58 6.18 42.51 4.70
3135 3362 4.072088 GAGTGCGGCGTTTCGGTG 62.072 66.667 9.37 0.00 0.00 4.94
3136 3363 4.595538 TGAGTGCGGCGTTTCGGT 62.596 61.111 9.37 0.00 0.00 4.69
3137 3364 3.777925 CTGAGTGCGGCGTTTCGG 61.778 66.667 9.37 5.33 0.00 4.30
3138 3365 3.777925 CCTGAGTGCGGCGTTTCG 61.778 66.667 9.37 1.34 0.00 3.46
3139 3366 2.665185 ACCTGAGTGCGGCGTTTC 60.665 61.111 9.37 4.59 0.00 2.78
3140 3367 2.972505 CACCTGAGTGCGGCGTTT 60.973 61.111 9.37 0.00 37.14 3.60
3141 3368 4.988598 CCACCTGAGTGCGGCGTT 62.989 66.667 9.37 0.00 43.09 4.84
3143 3370 4.063967 TACCACCTGAGTGCGGCG 62.064 66.667 0.51 0.51 43.09 6.46
3144 3371 1.601419 TAGTACCACCTGAGTGCGGC 61.601 60.000 0.00 0.00 43.09 6.53
3145 3372 1.112113 ATAGTACCACCTGAGTGCGG 58.888 55.000 0.00 0.00 43.09 5.69
3146 3373 2.094182 ACAATAGTACCACCTGAGTGCG 60.094 50.000 0.00 0.00 43.09 5.34
3147 3374 3.611766 ACAATAGTACCACCTGAGTGC 57.388 47.619 0.00 0.00 43.09 4.40
3148 3375 5.120208 CGAAAACAATAGTACCACCTGAGTG 59.880 44.000 0.00 0.00 44.12 3.51
3149 3376 5.221581 ACGAAAACAATAGTACCACCTGAGT 60.222 40.000 0.00 0.00 0.00 3.41
3150 3377 5.235516 ACGAAAACAATAGTACCACCTGAG 58.764 41.667 0.00 0.00 0.00 3.35
3151 3378 5.217978 ACGAAAACAATAGTACCACCTGA 57.782 39.130 0.00 0.00 0.00 3.86
3152 3379 5.934935 AACGAAAACAATAGTACCACCTG 57.065 39.130 0.00 0.00 0.00 4.00
3153 3380 7.879160 TGATAAACGAAAACAATAGTACCACCT 59.121 33.333 0.00 0.00 0.00 4.00
3154 3381 8.031848 TGATAAACGAAAACAATAGTACCACC 57.968 34.615 0.00 0.00 0.00 4.61
3235 3462 3.131046 ACCTCCACACAAAAAGCAGAAAG 59.869 43.478 0.00 0.00 0.00 2.62
3236 3463 3.096092 ACCTCCACACAAAAAGCAGAAA 58.904 40.909 0.00 0.00 0.00 2.52
3237 3464 2.733956 ACCTCCACACAAAAAGCAGAA 58.266 42.857 0.00 0.00 0.00 3.02
3239 3466 3.632145 ACTAACCTCCACACAAAAAGCAG 59.368 43.478 0.00 0.00 0.00 4.24
3240 3467 3.626930 ACTAACCTCCACACAAAAAGCA 58.373 40.909 0.00 0.00 0.00 3.91
3241 3468 4.649088 AACTAACCTCCACACAAAAAGC 57.351 40.909 0.00 0.00 0.00 3.51
3242 3469 6.451064 AGAAACTAACCTCCACACAAAAAG 57.549 37.500 0.00 0.00 0.00 2.27
3244 3471 6.184789 AGAAGAAACTAACCTCCACACAAAA 58.815 36.000 0.00 0.00 0.00 2.44
3246 3473 5.367945 AGAAGAAACTAACCTCCACACAA 57.632 39.130 0.00 0.00 0.00 3.33
3247 3474 6.681729 ATAGAAGAAACTAACCTCCACACA 57.318 37.500 0.00 0.00 0.00 3.72
3248 3475 7.838884 AGTATAGAAGAAACTAACCTCCACAC 58.161 38.462 0.00 0.00 0.00 3.82
3261 3488 9.950680 CAAGCAGAACAAAAAGTATAGAAGAAA 57.049 29.630 0.00 0.00 0.00 2.52
3290 3517 1.893786 CAGAGAGTGGCGCTTACCT 59.106 57.895 7.64 6.69 0.00 3.08
3406 3649 2.226330 TGTTCTGTTTCGTGGGGAATG 58.774 47.619 0.00 0.00 33.85 2.67
3477 3721 3.758554 GAGAGCCACAGCAGGAAATTTTA 59.241 43.478 0.00 0.00 43.56 1.52
3586 3830 1.599797 GTGTGTACACTGGGCACCC 60.600 63.158 25.60 0.00 42.62 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.