Multiple sequence alignment - TraesCS3D01G291400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G291400 chr3D 100.000 5772 0 0 1 5772 401311546 401305775 0.000000e+00 10659.0
1 TraesCS3D01G291400 chr3D 91.228 114 10 0 5352 5465 602554773 602554660 7.740000e-34 156.0
2 TraesCS3D01G291400 chr3B 91.149 2316 107 41 1922 4154 527173835 527171535 0.000000e+00 3051.0
3 TraesCS3D01G291400 chr3B 95.302 1341 34 8 601 1919 527175205 527173872 0.000000e+00 2100.0
4 TraesCS3D01G291400 chr3B 93.901 705 33 5 4393 5087 527169898 527169194 0.000000e+00 1055.0
5 TraesCS3D01G291400 chr3B 95.424 590 20 3 1 585 527175778 527175191 0.000000e+00 933.0
6 TraesCS3D01G291400 chr3B 85.668 307 15 8 5477 5757 527168813 527168510 4.370000e-76 296.0
7 TraesCS3D01G291400 chr3A 93.393 1998 89 18 1922 3881 521725888 521723896 0.000000e+00 2918.0
8 TraesCS3D01G291400 chr3A 94.225 710 28 3 706 1402 521727213 521726504 0.000000e+00 1072.0
9 TraesCS3D01G291400 chr3A 92.000 550 18 7 1396 1919 521726474 521725925 0.000000e+00 749.0
10 TraesCS3D01G291400 chr3A 87.595 661 50 18 4393 5037 521721246 521720602 0.000000e+00 737.0
11 TraesCS3D01G291400 chr3A 92.916 367 20 3 1 361 521728284 521727918 3.960000e-146 529.0
12 TraesCS3D01G291400 chr3A 94.828 232 10 2 355 585 521727811 521727581 1.530000e-95 361.0
13 TraesCS3D01G291400 chr3A 86.280 328 21 5 5461 5765 521720165 521719839 9.270000e-88 335.0
14 TraesCS3D01G291400 chr3A 86.780 295 12 10 3887 4154 521723101 521722807 2.610000e-78 303.0
15 TraesCS3D01G291400 chr3A 79.290 338 56 13 3 331 193946304 193946636 2.090000e-54 224.0
16 TraesCS3D01G291400 chr3A 95.413 109 4 1 600 708 521727596 521727489 7.690000e-39 172.0
17 TraesCS3D01G291400 chr1A 96.407 167 6 0 4228 4394 11628170 11628336 5.700000e-70 276.0
18 TraesCS3D01G291400 chr7B 93.855 179 10 1 4217 4394 281384491 281384669 9.530000e-68 268.0
19 TraesCS3D01G291400 chr5D 95.783 166 7 0 4229 4394 362997595 362997430 9.530000e-68 268.0
20 TraesCS3D01G291400 chr5D 77.941 340 60 11 6 336 501056113 501055780 1.270000e-46 198.0
21 TraesCS3D01G291400 chr5D 91.270 126 11 0 5354 5479 280775778 280775653 7.690000e-39 172.0
22 TraesCS3D01G291400 chr5D 88.393 112 13 0 5352 5463 278357772 278357883 1.010000e-27 135.0
23 TraesCS3D01G291400 chr4B 95.783 166 7 0 4230 4395 429242084 429241919 9.530000e-68 268.0
24 TraesCS3D01G291400 chr4B 91.398 186 13 2 4225 4410 567001877 567001695 9.600000e-63 252.0
25 TraesCS3D01G291400 chr6D 94.737 171 9 0 4224 4394 153869233 153869403 3.430000e-67 267.0
26 TraesCS3D01G291400 chr6D 80.272 294 51 7 3 292 461389960 461390250 1.260000e-51 215.0
27 TraesCS3D01G291400 chr4A 95.758 165 7 0 4230 4394 665604286 665604122 3.430000e-67 267.0
28 TraesCS3D01G291400 chr7D 95.152 165 8 0 4230 4394 363148997 363148833 1.600000e-65 261.0
29 TraesCS3D01G291400 chr7D 80.247 243 45 3 52 292 373053095 373053336 4.600000e-41 180.0
30 TraesCS3D01G291400 chr1D 93.220 177 12 0 4219 4395 9218383 9218207 1.600000e-65 261.0
31 TraesCS3D01G291400 chr1D 92.727 110 8 0 5352 5461 469531495 469531604 5.990000e-35 159.0
32 TraesCS3D01G291400 chr2D 78.193 321 59 7 3 313 34977518 34977837 1.640000e-45 195.0
33 TraesCS3D01G291400 chr2D 88.596 114 13 0 5352 5465 544345296 544345409 7.800000e-29 139.0
34 TraesCS3D01G291400 chr2D 94.595 37 1 1 4566 4602 262695036 262695071 8.080000e-04 56.5
35 TraesCS3D01G291400 chr1B 79.661 295 40 16 2 292 17366717 17366995 1.640000e-45 195.0
36 TraesCS3D01G291400 chr4D 91.791 134 11 0 5331 5464 477632033 477631900 2.750000e-43 187.0
37 TraesCS3D01G291400 chr6B 78.799 283 54 6 14 292 703151643 703151923 9.880000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G291400 chr3D 401305775 401311546 5771 True 10659.000000 10659 100.000000 1 5772 1 chr3D.!!$R1 5771
1 TraesCS3D01G291400 chr3B 527168510 527175778 7268 True 1487.000000 3051 92.288800 1 5757 5 chr3B.!!$R1 5756
2 TraesCS3D01G291400 chr3A 521719839 521728284 8445 True 797.333333 2918 91.492222 1 5765 9 chr3A.!!$R1 5764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 1293 0.162294 GTAAAAAGGCGGTCGTGACG 59.838 55.000 0.00 0.00 0.00 4.35 F
1189 1604 0.173255 TGCTTGATCTGATGTCGCGA 59.827 50.000 3.71 3.71 0.00 5.87 F
1305 1723 2.354821 GGAGGCACGGCTTAACATAAAG 59.645 50.000 0.00 0.00 0.00 1.85 F
2494 3012 1.134946 GCGTTGCCCAGCTATTTTCAT 59.865 47.619 0.00 0.00 0.00 2.57 F
2649 3167 1.135344 GGCGTGAGAGGTACTTGTCTC 60.135 57.143 3.76 8.21 41.55 3.36 F
4139 5510 0.178929 AGACCACCGAAGAGGGAGTT 60.179 55.000 0.00 0.00 46.96 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2460 2.163412 TGGAATCGGCTGTAACAATTGC 59.837 45.455 5.05 0.00 0.00 3.56 R
2424 2942 2.436542 TGGAGGAAAAGACGAGGAAACA 59.563 45.455 0.00 0.00 0.00 2.83 R
3291 3831 0.924823 AGCCATGGCCAAGAGAAGAT 59.075 50.000 33.14 7.61 43.17 2.40 R
3804 4357 0.038343 CCAAATTGCAGACCCCGTTG 60.038 55.000 0.00 0.00 0.00 4.10 R
4180 5551 0.174845 TTGGCAGGATAGTCGTTCGG 59.825 55.000 0.00 0.00 0.00 4.30 R
5272 8632 0.028902 GTTTGAAGTGGTGGCACGAC 59.971 55.000 23.14 23.14 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.302059 ACCTACTCATGCTCGTGTATATTGT 59.698 40.000 0.00 0.00 0.00 2.71
91 92 2.184830 TGTCTATCGACGAGCCCGG 61.185 63.158 3.01 0.00 43.21 5.73
168 169 0.702902 TCGGTGGAGGTAGAGTCCTT 59.297 55.000 0.00 0.00 38.02 3.36
185 186 3.315749 GTCCTTCACGACCTCGATATCTT 59.684 47.826 0.78 0.00 43.02 2.40
276 279 0.264955 ACCGACCTATGGGACCTCAT 59.735 55.000 0.25 0.00 36.25 2.90
277 280 1.502039 ACCGACCTATGGGACCTCATA 59.498 52.381 0.25 0.00 36.25 2.15
478 599 3.305398 AGTGTCGAACAAGGATCAGAC 57.695 47.619 0.00 0.00 0.00 3.51
499 620 2.355010 AAATGTCATAGCCAGGCTCC 57.645 50.000 20.38 5.26 40.44 4.70
545 667 6.625960 GCAAAGACCAAAACAAGAGAAAGACT 60.626 38.462 0.00 0.00 0.00 3.24
546 668 7.315890 CAAAGACCAAAACAAGAGAAAGACTT 58.684 34.615 0.00 0.00 0.00 3.01
588 711 7.618137 TCTTCTGGGAAATTACTGTACTAACC 58.382 38.462 0.00 0.00 0.00 2.85
589 712 6.303903 TCTGGGAAATTACTGTACTAACCC 57.696 41.667 0.00 0.00 35.82 4.11
590 713 5.190330 TCTGGGAAATTACTGTACTAACCCC 59.810 44.000 13.07 0.00 34.54 4.95
591 714 4.080975 TGGGAAATTACTGTACTAACCCCG 60.081 45.833 13.07 0.00 34.54 5.73
592 715 3.873361 GGAAATTACTGTACTAACCCCGC 59.127 47.826 0.00 0.00 0.00 6.13
593 716 4.506758 GAAATTACTGTACTAACCCCGCA 58.493 43.478 0.00 0.00 0.00 5.69
594 717 4.556592 AATTACTGTACTAACCCCGCAA 57.443 40.909 0.00 0.00 0.00 4.85
595 718 4.556592 ATTACTGTACTAACCCCGCAAA 57.443 40.909 0.00 0.00 0.00 3.68
596 719 2.934886 ACTGTACTAACCCCGCAAAA 57.065 45.000 0.00 0.00 0.00 2.44
597 720 3.211718 ACTGTACTAACCCCGCAAAAA 57.788 42.857 0.00 0.00 0.00 1.94
660 783 6.635755 TCACGTCAATATAAACTGTCATGGA 58.364 36.000 0.00 0.00 0.00 3.41
698 821 2.136298 TGCCTAAAAATCCGCCATCA 57.864 45.000 0.00 0.00 0.00 3.07
714 1115 5.106157 CCGCCATCAGACTTTTAACATTTCT 60.106 40.000 0.00 0.00 0.00 2.52
750 1157 9.744468 AGTATTATTATTTCATTTCGCAAACCC 57.256 29.630 0.00 0.00 0.00 4.11
884 1293 0.162294 GTAAAAAGGCGGTCGTGACG 59.838 55.000 0.00 0.00 0.00 4.35
1106 1521 0.679002 TCCTCCTCGATTCCGTTCGT 60.679 55.000 0.00 0.00 40.03 3.85
1162 1577 3.741830 TTGTCTGCCGCCGTTGTCA 62.742 57.895 0.00 0.00 0.00 3.58
1185 1600 1.592081 GCGACTGCTTGATCTGATGTC 59.408 52.381 0.00 0.00 38.39 3.06
1189 1604 0.173255 TGCTTGATCTGATGTCGCGA 59.827 50.000 3.71 3.71 0.00 5.87
1201 1616 3.371063 TCGCGACGAGGAGGCTTT 61.371 61.111 3.71 0.00 0.00 3.51
1202 1617 2.432628 CGCGACGAGGAGGCTTTT 60.433 61.111 0.00 0.00 0.00 2.27
1203 1618 2.445438 CGCGACGAGGAGGCTTTTC 61.445 63.158 0.00 0.00 0.00 2.29
1305 1723 2.354821 GGAGGCACGGCTTAACATAAAG 59.645 50.000 0.00 0.00 0.00 1.85
1435 1891 3.258228 CACATTTTGCGTATTTTCCCCC 58.742 45.455 0.00 0.00 0.00 5.40
1471 1927 3.616956 TTCTCCATCACATGACTGGAC 57.383 47.619 0.00 0.00 35.29 4.02
1778 2260 4.921515 TCGTGTGTAGCTTTGACTTACATC 59.078 41.667 0.00 0.00 0.00 3.06
1892 2374 9.733556 CAACATAATATTAGGTTACCTATGCCA 57.266 33.333 21.43 0.00 35.71 4.92
1963 2481 3.485947 TGCAATTGTTACAGCCGATTC 57.514 42.857 7.40 0.00 0.00 2.52
1969 2487 5.751243 ATTGTTACAGCCGATTCCATAAC 57.249 39.130 0.00 0.00 0.00 1.89
1987 2505 6.962902 TCCATAACCATTTGGGAAAAATACCT 59.037 34.615 0.96 0.00 41.15 3.08
2034 2552 9.983431 GATTTAGTGTTTACGTTTAATGCAAAC 57.017 29.630 0.00 6.16 42.68 2.93
2065 2583 9.317827 TCATGATATACTCCTTTCTGATCATCA 57.682 33.333 0.00 0.00 31.79 3.07
2118 2636 3.099141 AGCAGAAGAGGAAGAGGAAGAG 58.901 50.000 0.00 0.00 0.00 2.85
2186 2704 6.058183 AGAAGGTTGTATGCACTTATCCATC 58.942 40.000 0.00 0.00 0.00 3.51
2220 2738 5.404096 TGTTCATGTGCATGATTCATTGTC 58.596 37.500 14.65 0.00 46.12 3.18
2235 2753 6.908870 TTCATTGTCTACCAATCTGATTCG 57.091 37.500 0.00 0.00 41.93 3.34
2350 2868 5.928839 AGAAGCTGATGTAAGTGTGTTACAG 59.071 40.000 4.14 0.00 38.17 2.74
2351 2869 5.215252 AGCTGATGTAAGTGTGTTACAGT 57.785 39.130 4.14 0.00 38.17 3.55
2459 2977 7.339466 GTCTTTTCCTCCATTGCCTTTTCTATA 59.661 37.037 0.00 0.00 0.00 1.31
2464 2982 7.125391 TCCTCCATTGCCTTTTCTATATTGTT 58.875 34.615 0.00 0.00 0.00 2.83
2465 2983 7.068593 TCCTCCATTGCCTTTTCTATATTGTTG 59.931 37.037 0.00 0.00 0.00 3.33
2494 3012 1.134946 GCGTTGCCCAGCTATTTTCAT 59.865 47.619 0.00 0.00 0.00 2.57
2513 3031 6.957920 TTCATTCATGAAAAGTGAAGTGGA 57.042 33.333 13.09 0.00 43.26 4.02
2649 3167 1.135344 GGCGTGAGAGGTACTTGTCTC 60.135 57.143 3.76 8.21 41.55 3.36
2688 3206 8.313931 GCTATTTTCTTATTTGTGAAATGCGAC 58.686 33.333 0.00 0.00 33.04 5.19
2713 3231 7.610305 ACGGTTATTCCATGTTTTCTGTCTTAT 59.390 33.333 0.00 0.00 35.57 1.73
2739 3257 7.989826 ACTCTGTTTTTGTATCATATCTTGCC 58.010 34.615 0.00 0.00 0.00 4.52
2820 3339 4.954970 CTGGGCAAGTGGGCGTGT 62.955 66.667 0.00 0.00 44.56 4.49
2863 3383 7.658167 TGACGAATCAGTAGATAAACAAAACCA 59.342 33.333 0.00 0.00 33.08 3.67
2905 3425 6.763355 AGTGGTCAGCATATTACCTTCTATG 58.237 40.000 0.00 0.00 34.23 2.23
2932 3452 1.187567 ATTCCCACTGGTTTGCAGGC 61.188 55.000 0.00 0.00 0.00 4.85
2963 3483 3.067461 GTCTGTAGGTAGCACATCTCAGG 59.933 52.174 0.00 0.00 0.00 3.86
2997 3524 3.569701 CACTATGTTGGCACTCACCTTTT 59.430 43.478 0.00 0.00 0.00 2.27
2998 3525 4.037923 CACTATGTTGGCACTCACCTTTTT 59.962 41.667 0.00 0.00 0.00 1.94
3049 3576 5.779529 TCCGTGTAAAACTGTAAGAGAGT 57.220 39.130 0.00 0.00 37.43 3.24
3051 3578 5.068198 TCCGTGTAAAACTGTAAGAGAGTGT 59.932 40.000 0.00 0.00 37.43 3.55
3052 3579 6.262944 TCCGTGTAAAACTGTAAGAGAGTGTA 59.737 38.462 0.00 0.00 37.43 2.90
3078 3609 3.689649 GTGAGTGGAAAGAACACAACACT 59.310 43.478 13.92 0.00 40.99 3.55
3096 3627 5.697848 ACACTTATTATGTCGAAGTTCGC 57.302 39.130 20.42 15.19 40.21 4.70
3291 3831 4.901197 TTCCATGTTGTGCTTACCTCTA 57.099 40.909 0.00 0.00 0.00 2.43
3292 3832 5.435686 TTCCATGTTGTGCTTACCTCTAT 57.564 39.130 0.00 0.00 0.00 1.98
3293 3833 5.023533 TCCATGTTGTGCTTACCTCTATC 57.976 43.478 0.00 0.00 0.00 2.08
3294 3834 4.716784 TCCATGTTGTGCTTACCTCTATCT 59.283 41.667 0.00 0.00 0.00 1.98
3309 3860 2.105477 TCTATCTTCTCTTGGCCATGGC 59.895 50.000 29.47 29.47 41.06 4.40
3345 3896 4.128925 TCACATGGACTGCTACAAGATC 57.871 45.455 0.00 0.00 0.00 2.75
3360 3911 5.255710 ACAAGATCGGACTCACATAGAAG 57.744 43.478 0.00 0.00 0.00 2.85
3391 3942 5.411669 CCACAATAAGGAGAGTAGCGTTTTT 59.588 40.000 0.00 0.00 0.00 1.94
3431 3982 8.370182 TGAATAGAGTATTGATATCAGCAGCAA 58.630 33.333 5.39 0.00 0.00 3.91
3445 3996 2.613730 CAGCAATGAACTCACAGCTG 57.386 50.000 13.48 13.48 44.66 4.24
3446 3997 1.878088 CAGCAATGAACTCACAGCTGT 59.122 47.619 15.25 15.25 44.82 4.40
3460 4011 3.131577 CACAGCTGTTGCCCAATCATATT 59.868 43.478 18.94 0.00 40.80 1.28
3525 4078 2.254546 TCGTGGAAGTTGCAGATTGT 57.745 45.000 0.00 0.00 0.00 2.71
3600 4153 2.693797 CAGATGCTGCAAAGAAACGT 57.306 45.000 6.36 0.00 0.00 3.99
3634 4187 3.084786 GCTGGTATGCCCCTTGATATTC 58.915 50.000 0.00 0.00 0.00 1.75
3646 4199 6.525629 CCCCTTGATATTCGTCTATTGTTCT 58.474 40.000 0.00 0.00 0.00 3.01
3680 4233 2.502213 TCGTTGCCCTACATATCGTG 57.498 50.000 0.00 0.00 0.00 4.35
3715 4268 5.652891 GTCTTTGACCTCTACCTGTCTCATA 59.347 44.000 0.00 0.00 32.67 2.15
3717 4270 6.897966 TCTTTGACCTCTACCTGTCTCATAAT 59.102 38.462 0.00 0.00 32.67 1.28
3755 4308 9.717892 GGAGTATTTGTTCCTTCGATATTTTTC 57.282 33.333 0.00 0.00 0.00 2.29
3848 4401 5.471556 TTTGTGACGGAATAGGAGTTGTA 57.528 39.130 0.00 0.00 0.00 2.41
3957 5301 5.278266 CGTCTGGTCACCATGTAATTTTTGT 60.278 40.000 0.00 0.00 30.82 2.83
4018 5385 1.977854 TCTTCCTCAAGGTAGCAGCAA 59.022 47.619 0.00 0.00 33.22 3.91
4043 5410 2.602257 TATGGCTCAATCGAGTGTGG 57.398 50.000 13.18 8.30 41.71 4.17
4086 5453 3.361786 ACAAATAACCCCCGAATCAAGG 58.638 45.455 0.00 0.00 0.00 3.61
4087 5454 2.067365 AATAACCCCCGAATCAAGGC 57.933 50.000 0.00 0.00 0.00 4.35
4107 5477 4.119862 GGCGATACTAAGAAATCTGCACA 58.880 43.478 0.00 0.00 0.00 4.57
4108 5478 4.210120 GGCGATACTAAGAAATCTGCACAG 59.790 45.833 0.00 0.00 0.00 3.66
4139 5510 0.178929 AGACCACCGAAGAGGGAGTT 60.179 55.000 0.00 0.00 46.96 3.01
4142 5513 1.674057 CACCGAAGAGGGAGTTGCT 59.326 57.895 0.00 0.00 46.96 3.91
4154 5525 3.153919 GGGAGTTGCTTATGAACAACCA 58.846 45.455 0.53 0.00 45.79 3.67
4155 5526 3.057526 GGGAGTTGCTTATGAACAACCAC 60.058 47.826 0.53 0.00 45.79 4.16
4159 5530 4.048504 GTTGCTTATGAACAACCACCAAC 58.951 43.478 0.00 0.00 40.19 3.77
4162 5533 3.305335 GCTTATGAACAACCACCAACCAG 60.305 47.826 0.00 0.00 0.00 4.00
4165 5536 1.283613 TGAACAACCACCAACCAGACT 59.716 47.619 0.00 0.00 0.00 3.24
4166 5537 2.506231 TGAACAACCACCAACCAGACTA 59.494 45.455 0.00 0.00 0.00 2.59
4168 5539 3.655615 ACAACCACCAACCAGACTAAA 57.344 42.857 0.00 0.00 0.00 1.85
4171 5542 4.164604 ACAACCACCAACCAGACTAAACTA 59.835 41.667 0.00 0.00 0.00 2.24
4172 5543 4.618920 ACCACCAACCAGACTAAACTAG 57.381 45.455 0.00 0.00 0.00 2.57
4173 5544 3.971971 ACCACCAACCAGACTAAACTAGT 59.028 43.478 0.00 0.00 42.86 2.57
4174 5545 4.411212 ACCACCAACCAGACTAAACTAGTT 59.589 41.667 1.12 1.12 39.59 2.24
4175 5546 4.755123 CCACCAACCAGACTAAACTAGTTG 59.245 45.833 9.34 0.00 39.59 3.16
4176 5547 4.213482 CACCAACCAGACTAAACTAGTTGC 59.787 45.833 9.34 0.00 39.59 4.17
4177 5548 3.432252 CCAACCAGACTAAACTAGTTGCG 59.568 47.826 9.34 5.90 39.59 4.85
4178 5549 4.056050 CAACCAGACTAAACTAGTTGCGT 58.944 43.478 9.34 9.23 39.59 5.24
4179 5550 3.910648 ACCAGACTAAACTAGTTGCGTC 58.089 45.455 21.24 21.24 39.59 5.19
4180 5551 3.251571 CCAGACTAAACTAGTTGCGTCC 58.748 50.000 23.44 12.56 39.59 4.79
4181 5552 3.251571 CAGACTAAACTAGTTGCGTCCC 58.748 50.000 23.44 9.54 39.59 4.46
4182 5553 2.094854 AGACTAAACTAGTTGCGTCCCG 60.095 50.000 23.44 7.35 39.59 5.14
4183 5554 1.888512 ACTAAACTAGTTGCGTCCCGA 59.111 47.619 9.34 0.00 34.86 5.14
4184 5555 2.297033 ACTAAACTAGTTGCGTCCCGAA 59.703 45.455 9.34 0.00 34.86 4.30
4229 7249 2.806434 TGTGGCCTTTGCATAACATCT 58.194 42.857 3.32 0.00 40.13 2.90
4230 7250 3.961849 TGTGGCCTTTGCATAACATCTA 58.038 40.909 3.32 0.00 40.13 1.98
4231 7251 3.694072 TGTGGCCTTTGCATAACATCTAC 59.306 43.478 3.32 0.00 40.13 2.59
4232 7252 3.947834 GTGGCCTTTGCATAACATCTACT 59.052 43.478 3.32 0.00 40.13 2.57
4233 7253 4.035675 GTGGCCTTTGCATAACATCTACTC 59.964 45.833 3.32 0.00 40.13 2.59
4234 7254 3.565902 GGCCTTTGCATAACATCTACTCC 59.434 47.826 0.00 0.00 40.13 3.85
4235 7255 3.565902 GCCTTTGCATAACATCTACTCCC 59.434 47.826 0.00 0.00 37.47 4.30
4236 7256 4.687219 GCCTTTGCATAACATCTACTCCCT 60.687 45.833 0.00 0.00 37.47 4.20
4237 7257 5.059833 CCTTTGCATAACATCTACTCCCTC 58.940 45.833 0.00 0.00 0.00 4.30
4238 7258 4.689612 TTGCATAACATCTACTCCCTCC 57.310 45.455 0.00 0.00 0.00 4.30
4239 7259 2.628178 TGCATAACATCTACTCCCTCCG 59.372 50.000 0.00 0.00 0.00 4.63
4240 7260 2.628657 GCATAACATCTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
4241 7261 3.069729 GCATAACATCTACTCCCTCCGTT 59.930 47.826 0.00 0.00 0.00 4.44
4242 7262 4.796618 GCATAACATCTACTCCCTCCGTTC 60.797 50.000 0.00 0.00 0.00 3.95
4243 7263 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
4244 7264 1.041437 CATCTACTCCCTCCGTTCCC 58.959 60.000 0.00 0.00 0.00 3.97
4245 7265 0.635009 ATCTACTCCCTCCGTTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4246 7266 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
4247 7267 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
4248 7268 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
4249 7269 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4250 7270 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4251 7271 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4252 7272 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4253 7273 4.663592 ACTCCCTCCGTTCCCAAATATAAT 59.336 41.667 0.00 0.00 0.00 1.28
4254 7274 5.133830 ACTCCCTCCGTTCCCAAATATAATT 59.866 40.000 0.00 0.00 0.00 1.40
4255 7275 5.627135 TCCCTCCGTTCCCAAATATAATTC 58.373 41.667 0.00 0.00 0.00 2.17
4256 7276 4.765339 CCCTCCGTTCCCAAATATAATTCC 59.235 45.833 0.00 0.00 0.00 3.01
4257 7277 5.457633 CCCTCCGTTCCCAAATATAATTCCT 60.458 44.000 0.00 0.00 0.00 3.36
4258 7278 6.068670 CCTCCGTTCCCAAATATAATTCCTT 58.931 40.000 0.00 0.00 0.00 3.36
4259 7279 6.549736 CCTCCGTTCCCAAATATAATTCCTTT 59.450 38.462 0.00 0.00 0.00 3.11
4260 7280 7.069455 CCTCCGTTCCCAAATATAATTCCTTTT 59.931 37.037 0.00 0.00 0.00 2.27
4261 7281 9.127277 CTCCGTTCCCAAATATAATTCCTTTTA 57.873 33.333 0.00 0.00 0.00 1.52
4262 7282 9.127277 TCCGTTCCCAAATATAATTCCTTTTAG 57.873 33.333 0.00 0.00 0.00 1.85
4263 7283 9.127277 CCGTTCCCAAATATAATTCCTTTTAGA 57.873 33.333 0.00 0.00 0.00 2.10
4276 7296 6.554334 TTCCTTTTAGAGATTCCAACAACG 57.446 37.500 0.00 0.00 0.00 4.10
4277 7297 5.001232 TCCTTTTAGAGATTCCAACAACGG 58.999 41.667 0.00 0.00 0.00 4.44
4278 7298 5.001232 CCTTTTAGAGATTCCAACAACGGA 58.999 41.667 0.00 0.00 0.00 4.69
4279 7299 5.106673 CCTTTTAGAGATTCCAACAACGGAC 60.107 44.000 0.00 0.00 33.75 4.79
4280 7300 4.884668 TTAGAGATTCCAACAACGGACT 57.115 40.909 0.00 0.00 33.75 3.85
4281 7301 5.988310 TTAGAGATTCCAACAACGGACTA 57.012 39.130 0.00 0.00 33.75 2.59
4282 7302 4.189639 AGAGATTCCAACAACGGACTAC 57.810 45.455 0.00 0.00 33.75 2.73
4283 7303 3.576982 AGAGATTCCAACAACGGACTACA 59.423 43.478 0.00 0.00 33.75 2.74
4284 7304 4.223032 AGAGATTCCAACAACGGACTACAT 59.777 41.667 0.00 0.00 33.75 2.29
4285 7305 5.421056 AGAGATTCCAACAACGGACTACATA 59.579 40.000 0.00 0.00 33.75 2.29
4286 7306 5.416947 AGATTCCAACAACGGACTACATAC 58.583 41.667 0.00 0.00 33.75 2.39
4287 7307 3.220507 TCCAACAACGGACTACATACG 57.779 47.619 0.00 0.00 0.00 3.06
4288 7308 2.094597 TCCAACAACGGACTACATACGG 60.095 50.000 0.00 0.00 0.00 4.02
4289 7309 2.094597 CCAACAACGGACTACATACGGA 60.095 50.000 0.00 0.00 0.00 4.69
4290 7310 3.176708 CAACAACGGACTACATACGGAG 58.823 50.000 0.00 0.00 0.00 4.63
4291 7311 1.133790 ACAACGGACTACATACGGAGC 59.866 52.381 0.00 0.00 0.00 4.70
4292 7312 1.133598 CAACGGACTACATACGGAGCA 59.866 52.381 0.00 0.00 0.00 4.26
4293 7313 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
4294 7314 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
4295 7315 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
4296 7316 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
4297 7317 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
4298 7318 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
4299 7319 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4300 7320 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4301 7321 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4302 7322 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4303 7323 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4304 7324 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4305 7325 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4306 7326 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4307 7327 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4308 7328 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4309 7329 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4310 7330 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4346 7366 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
4347 7367 9.985318 GTCTATATACATCCGTATGTTGTAGTC 57.015 37.037 0.00 0.00 44.07 2.59
4348 7368 9.170734 TCTATATACATCCGTATGTTGTAGTCC 57.829 37.037 0.00 0.00 44.07 3.85
4349 7369 7.770366 ATATACATCCGTATGTTGTAGTCCA 57.230 36.000 0.00 0.00 44.07 4.02
4350 7370 6.665992 ATACATCCGTATGTTGTAGTCCAT 57.334 37.500 0.00 0.00 44.07 3.41
4351 7371 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
4352 7372 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
4353 7373 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
4354 7374 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
4355 7375 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
4356 7376 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
4357 7377 6.148150 TCCGTATGTTGTAGTCCATTTGAAAC 59.852 38.462 0.00 0.00 0.00 2.78
4358 7378 6.311723 CGTATGTTGTAGTCCATTTGAAACC 58.688 40.000 0.00 0.00 0.00 3.27
4359 7379 6.148811 CGTATGTTGTAGTCCATTTGAAACCT 59.851 38.462 0.00 0.00 0.00 3.50
4360 7380 6.575162 ATGTTGTAGTCCATTTGAAACCTC 57.425 37.500 0.00 0.00 0.00 3.85
4361 7381 5.690865 TGTTGTAGTCCATTTGAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
4362 7382 6.833041 TGTTGTAGTCCATTTGAAACCTCTA 58.167 36.000 0.00 0.00 0.00 2.43
4363 7383 7.284074 TGTTGTAGTCCATTTGAAACCTCTAA 58.716 34.615 0.00 0.00 0.00 2.10
4364 7384 7.776030 TGTTGTAGTCCATTTGAAACCTCTAAA 59.224 33.333 0.00 0.00 0.00 1.85
4365 7385 8.626526 GTTGTAGTCCATTTGAAACCTCTAAAA 58.373 33.333 0.00 0.00 0.00 1.52
4366 7386 8.754991 TGTAGTCCATTTGAAACCTCTAAAAA 57.245 30.769 0.00 0.00 0.00 1.94
4367 7387 8.846211 TGTAGTCCATTTGAAACCTCTAAAAAG 58.154 33.333 0.00 0.00 0.00 2.27
4368 7388 9.063615 GTAGTCCATTTGAAACCTCTAAAAAGA 57.936 33.333 0.00 0.00 0.00 2.52
4369 7389 7.941919 AGTCCATTTGAAACCTCTAAAAAGAC 58.058 34.615 0.00 0.00 0.00 3.01
4370 7390 7.780271 AGTCCATTTGAAACCTCTAAAAAGACT 59.220 33.333 0.00 0.00 0.00 3.24
4371 7391 8.414003 GTCCATTTGAAACCTCTAAAAAGACTT 58.586 33.333 0.00 0.00 0.00 3.01
4372 7392 9.635404 TCCATTTGAAACCTCTAAAAAGACTTA 57.365 29.630 0.00 0.00 0.00 2.24
4388 7408 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4389 7409 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4390 7410 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4391 7411 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4464 7489 7.770897 AGAATATTTTAGAGTCGTTTGGAGCAT 59.229 33.333 0.00 0.00 0.00 3.79
4496 7521 4.749048 AGAAAGGGAATCTTTTGGGAGT 57.251 40.909 0.00 0.00 45.00 3.85
4515 7540 5.285798 GAGTCTCTCCATATGTACTACGC 57.714 47.826 1.24 0.00 0.00 4.42
4609 7648 2.159226 CGGAGGGAGTACTTTGCACTAG 60.159 54.545 0.00 0.00 0.00 2.57
4660 7699 7.432148 AAGTGTTGGTATTTTCTTTTCCCTT 57.568 32.000 0.00 0.00 0.00 3.95
4756 7798 4.562552 GCAGCTAAAGAACAGAGGAAGACT 60.563 45.833 0.00 0.00 0.00 3.24
4806 7848 1.138661 GAGGCATGAGCTAAGCTGAGT 59.861 52.381 0.00 0.00 39.88 3.41
4814 7856 3.134458 GAGCTAAGCTGAGTTGTGTTGT 58.866 45.455 0.00 0.00 39.88 3.32
4838 7880 9.453572 TGTCTGGATATTTATTTCTATGCATCC 57.546 33.333 0.19 0.00 32.94 3.51
4862 7905 7.232127 TCCTAGTATATTTAAACCGGGTCTCTG 59.768 40.741 6.32 0.00 0.00 3.35
4890 7933 9.473007 TCCATCATCTACATTTCCATAAAAACA 57.527 29.630 0.00 0.00 0.00 2.83
5012 8055 7.048629 TGCTTTCACTCAAAAATTGGTATGA 57.951 32.000 0.00 0.00 0.00 2.15
5057 8101 0.764369 TTGGAGGCCCGAGCTGATAT 60.764 55.000 0.00 0.00 39.73 1.63
5062 8106 1.302033 GCCCGAGCTGATATGTGGG 60.302 63.158 0.00 0.00 39.72 4.61
5074 8118 2.620251 TATGTGGGTGTATGAGCAGC 57.380 50.000 0.00 0.00 36.26 5.25
5076 8120 0.399833 TGTGGGTGTATGAGCAGCAA 59.600 50.000 0.00 0.00 38.49 3.91
5087 8141 5.824097 TGTATGAGCAGCAACATATGTGATT 59.176 36.000 9.63 0.00 32.77 2.57
5093 8147 2.466846 GCAACATATGTGATTGCAGGC 58.533 47.619 20.90 7.76 46.37 4.85
5096 8150 1.942657 ACATATGTGATTGCAGGCGTC 59.057 47.619 7.78 0.00 0.00 5.19
5125 8179 0.959867 TGCGTTGTGTGGATGATGGG 60.960 55.000 0.00 0.00 0.00 4.00
5168 8303 8.514594 CAGTCAATCAAATACACAATACCTTGT 58.485 33.333 0.00 0.00 46.54 3.16
5181 8316 7.630242 ACAATACCTTGTTGTGATGGAATAG 57.370 36.000 0.00 0.00 43.05 1.73
5183 8318 3.356290 ACCTTGTTGTGATGGAATAGCC 58.644 45.455 0.00 0.00 37.10 3.93
5187 8322 3.680490 TGTTGTGATGGAATAGCCGAAA 58.320 40.909 0.00 0.00 40.66 3.46
5215 8350 2.402640 CGATTAGCACCTCGTAGGAC 57.597 55.000 7.76 0.79 37.67 3.85
5216 8351 1.674441 CGATTAGCACCTCGTAGGACA 59.326 52.381 7.76 0.00 37.67 4.02
5217 8352 2.098607 CGATTAGCACCTCGTAGGACAA 59.901 50.000 7.76 0.00 37.67 3.18
5218 8353 3.243434 CGATTAGCACCTCGTAGGACAAT 60.243 47.826 7.76 2.48 37.67 2.71
5219 8354 4.694339 GATTAGCACCTCGTAGGACAATT 58.306 43.478 7.76 0.00 37.67 2.32
5220 8355 5.506815 CGATTAGCACCTCGTAGGACAATTA 60.507 44.000 7.76 0.00 37.67 1.40
5222 8357 3.858247 AGCACCTCGTAGGACAATTAAC 58.142 45.455 7.76 0.00 37.67 2.01
5223 8358 3.259876 AGCACCTCGTAGGACAATTAACA 59.740 43.478 7.76 0.00 37.67 2.41
5225 8360 4.270325 GCACCTCGTAGGACAATTAACATC 59.730 45.833 7.76 0.00 37.67 3.06
5226 8361 4.809426 CACCTCGTAGGACAATTAACATCC 59.191 45.833 7.76 0.00 37.67 3.51
5228 8363 4.377897 CTCGTAGGACAATTAACATCCCC 58.622 47.826 0.00 0.00 32.47 4.81
5232 8367 5.163385 CGTAGGACAATTAACATCCCCAGTA 60.163 44.000 0.00 0.00 32.47 2.74
5233 8368 5.789574 AGGACAATTAACATCCCCAGTAA 57.210 39.130 0.00 0.00 32.47 2.24
5234 8369 6.147437 AGGACAATTAACATCCCCAGTAAA 57.853 37.500 0.00 0.00 32.47 2.01
5236 8371 7.013834 AGGACAATTAACATCCCCAGTAAAAA 58.986 34.615 0.00 0.00 32.47 1.94
5268 8628 4.752879 TGACGCAGCTAACGGGCC 62.753 66.667 12.38 0.00 34.00 5.80
5272 8632 3.799755 GCAGCTAACGGGCCAACG 61.800 66.667 4.39 1.48 40.31 4.10
5290 8650 1.433053 CGTCGTGCCACCACTTCAAA 61.433 55.000 0.00 0.00 39.86 2.69
5291 8651 0.028902 GTCGTGCCACCACTTCAAAC 59.971 55.000 0.00 0.00 39.86 2.93
5295 8655 1.748493 GTGCCACCACTTCAAACAAGA 59.252 47.619 0.00 0.00 38.93 3.02
5298 8658 2.799562 GCCACCACTTCAAACAAGAAGC 60.800 50.000 3.78 0.00 46.97 3.86
5299 8659 2.541588 CCACCACTTCAAACAAGAAGCG 60.542 50.000 3.78 0.00 46.97 4.68
5300 8660 1.065551 ACCACTTCAAACAAGAAGCGC 59.934 47.619 0.00 0.00 46.97 5.92
5301 8661 1.065401 CCACTTCAAACAAGAAGCGCA 59.935 47.619 11.47 0.00 46.97 6.09
5303 8663 1.268032 ACTTCAAACAAGAAGCGCACG 60.268 47.619 11.47 0.00 46.97 5.34
5304 8664 1.003972 CTTCAAACAAGAAGCGCACGA 60.004 47.619 11.47 0.00 38.64 4.35
5305 8665 1.010580 TCAAACAAGAAGCGCACGAA 58.989 45.000 11.47 0.00 0.00 3.85
5307 8667 6.763599 CTTCAAACAAGAAGCGCACGAAGT 62.764 45.833 11.47 0.00 39.26 3.01
5320 8680 0.680061 ACGAAGTGGAGTGGGAAGTC 59.320 55.000 0.00 0.00 42.51 3.01
5336 8696 4.442753 GGGAAGTCTCAGCTCTGATTTAGG 60.443 50.000 0.00 0.00 39.13 2.69
5337 8697 4.442753 GGAAGTCTCAGCTCTGATTTAGGG 60.443 50.000 0.00 0.00 39.13 3.53
5338 8698 3.037549 AGTCTCAGCTCTGATTTAGGGG 58.962 50.000 0.00 0.00 39.13 4.79
5339 8699 1.765314 TCTCAGCTCTGATTTAGGGGC 59.235 52.381 0.00 0.00 39.13 5.80
5340 8700 0.839946 TCAGCTCTGATTTAGGGGCC 59.160 55.000 0.00 0.00 34.14 5.80
5341 8701 0.533755 CAGCTCTGATTTAGGGGCCG 60.534 60.000 0.00 0.00 0.00 6.13
5342 8702 0.983378 AGCTCTGATTTAGGGGCCGT 60.983 55.000 3.37 3.37 0.00 5.68
5343 8703 0.107165 GCTCTGATTTAGGGGCCGTT 60.107 55.000 3.09 0.00 0.00 4.44
5344 8704 1.682087 GCTCTGATTTAGGGGCCGTTT 60.682 52.381 3.09 0.00 0.00 3.60
5345 8705 2.017049 CTCTGATTTAGGGGCCGTTTG 58.983 52.381 3.09 0.00 0.00 2.93
5346 8706 1.102978 CTGATTTAGGGGCCGTTTGG 58.897 55.000 3.09 0.00 38.77 3.28
5347 8707 0.699399 TGATTTAGGGGCCGTTTGGA 59.301 50.000 3.09 0.00 37.49 3.53
5348 8708 1.340600 TGATTTAGGGGCCGTTTGGAG 60.341 52.381 3.09 0.00 37.49 3.86
5349 8709 0.033503 ATTTAGGGGCCGTTTGGAGG 60.034 55.000 3.09 0.00 37.49 4.30
5366 8726 3.934962 GCCCTCCGCTCCCAGATC 61.935 72.222 0.00 0.00 0.00 2.75
5367 8727 3.610669 CCCTCCGCTCCCAGATCG 61.611 72.222 0.00 0.00 0.00 3.69
5368 8728 3.610669 CCTCCGCTCCCAGATCGG 61.611 72.222 0.54 0.54 41.88 4.18
5369 8729 2.519541 CTCCGCTCCCAGATCGGA 60.520 66.667 9.03 9.03 45.95 4.55
5370 8730 2.833582 TCCGCTCCCAGATCGGAC 60.834 66.667 5.53 0.00 43.82 4.79
5371 8731 4.271816 CCGCTCCCAGATCGGACG 62.272 72.222 0.68 5.34 42.97 4.79
5372 8732 4.271816 CGCTCCCAGATCGGACGG 62.272 72.222 5.32 0.00 36.56 4.79
5373 8733 2.833582 GCTCCCAGATCGGACGGA 60.834 66.667 5.32 0.00 36.56 4.69
5374 8734 3.121019 CTCCCAGATCGGACGGAC 58.879 66.667 5.32 0.00 36.56 4.79
5375 8735 2.441532 TCCCAGATCGGACGGACC 60.442 66.667 5.32 0.00 36.56 4.46
5376 8736 2.442272 CCCAGATCGGACGGACCT 60.442 66.667 5.32 0.00 36.56 3.85
5377 8737 2.786495 CCCAGATCGGACGGACCTG 61.786 68.421 0.00 0.00 36.56 4.00
5378 8738 2.105128 CAGATCGGACGGACCTGC 59.895 66.667 0.00 0.00 36.31 4.85
5379 8739 3.518998 AGATCGGACGGACCTGCG 61.519 66.667 0.00 0.00 36.31 5.18
5380 8740 4.570663 GATCGGACGGACCTGCGG 62.571 72.222 5.34 0.00 36.31 5.69
5392 8752 2.871096 ACCTGCGGGTAGAAAATTCA 57.129 45.000 18.00 0.00 45.32 2.57
5393 8753 2.711542 ACCTGCGGGTAGAAAATTCAG 58.288 47.619 18.00 0.00 45.32 3.02
5394 8754 2.304761 ACCTGCGGGTAGAAAATTCAGA 59.695 45.455 18.00 0.00 45.32 3.27
5395 8755 2.939103 CCTGCGGGTAGAAAATTCAGAG 59.061 50.000 2.29 0.00 0.00 3.35
5396 8756 2.352960 CTGCGGGTAGAAAATTCAGAGC 59.647 50.000 0.00 0.00 0.00 4.09
5397 8757 1.327764 GCGGGTAGAAAATTCAGAGCG 59.672 52.381 0.00 0.00 0.00 5.03
5398 8758 1.933853 CGGGTAGAAAATTCAGAGCGG 59.066 52.381 0.00 0.00 0.00 5.52
5399 8759 1.671328 GGGTAGAAAATTCAGAGCGGC 59.329 52.381 0.00 0.00 0.00 6.53
5400 8760 1.671328 GGTAGAAAATTCAGAGCGGCC 59.329 52.381 0.00 0.00 0.00 6.13
5401 8761 1.327764 GTAGAAAATTCAGAGCGGCCG 59.672 52.381 24.05 24.05 0.00 6.13
5402 8762 0.036388 AGAAAATTCAGAGCGGCCGA 60.036 50.000 33.48 6.95 0.00 5.54
5403 8763 0.802494 GAAAATTCAGAGCGGCCGAA 59.198 50.000 33.48 14.93 0.00 4.30
5404 8764 1.199097 GAAAATTCAGAGCGGCCGAAA 59.801 47.619 33.48 14.37 0.00 3.46
5405 8765 0.521735 AAATTCAGAGCGGCCGAAAC 59.478 50.000 33.48 18.74 0.00 2.78
5406 8766 1.635663 AATTCAGAGCGGCCGAAACG 61.636 55.000 33.48 14.37 0.00 3.60
5416 8776 4.323477 CCGAAACGGTGCTCCCCA 62.323 66.667 0.00 0.00 42.73 4.96
5417 8777 2.742372 CGAAACGGTGCTCCCCAG 60.742 66.667 0.00 0.00 0.00 4.45
5418 8778 2.747686 GAAACGGTGCTCCCCAGA 59.252 61.111 0.00 0.00 0.00 3.86
5419 8779 1.299976 GAAACGGTGCTCCCCAGAT 59.700 57.895 0.00 0.00 0.00 2.90
5420 8780 0.744771 GAAACGGTGCTCCCCAGATC 60.745 60.000 0.00 0.00 0.00 2.75
5421 8781 2.198304 AAACGGTGCTCCCCAGATCC 62.198 60.000 0.00 0.00 0.00 3.36
5422 8782 4.227134 CGGTGCTCCCCAGATCCG 62.227 72.222 0.00 0.00 33.38 4.18
5423 8783 4.554036 GGTGCTCCCCAGATCCGC 62.554 72.222 0.00 0.00 0.00 5.54
5424 8784 4.899239 GTGCTCCCCAGATCCGCG 62.899 72.222 0.00 0.00 0.00 6.46
5426 8786 3.224324 GCTCCCCAGATCCGCGTA 61.224 66.667 4.92 0.00 0.00 4.42
5427 8787 2.574955 GCTCCCCAGATCCGCGTAT 61.575 63.158 4.92 0.00 0.00 3.06
5428 8788 2.050269 CTCCCCAGATCCGCGTATT 58.950 57.895 4.92 0.00 0.00 1.89
5429 8789 0.393077 CTCCCCAGATCCGCGTATTT 59.607 55.000 4.92 0.00 0.00 1.40
5430 8790 0.834612 TCCCCAGATCCGCGTATTTT 59.165 50.000 4.92 0.00 0.00 1.82
5431 8791 0.944386 CCCCAGATCCGCGTATTTTG 59.056 55.000 4.92 0.00 0.00 2.44
5432 8792 1.474320 CCCCAGATCCGCGTATTTTGA 60.474 52.381 4.92 0.00 0.00 2.69
5433 8793 1.867233 CCCAGATCCGCGTATTTTGAG 59.133 52.381 4.92 0.00 0.00 3.02
5434 8794 1.867233 CCAGATCCGCGTATTTTGAGG 59.133 52.381 4.92 0.00 0.00 3.86
5435 8795 2.483013 CCAGATCCGCGTATTTTGAGGA 60.483 50.000 4.92 0.00 39.69 3.71
5436 8796 2.797156 CAGATCCGCGTATTTTGAGGAG 59.203 50.000 4.92 0.00 38.74 3.69
5437 8797 1.527311 GATCCGCGTATTTTGAGGAGC 59.473 52.381 4.92 0.00 38.74 4.70
5438 8798 0.535335 TCCGCGTATTTTGAGGAGCT 59.465 50.000 4.92 0.00 31.32 4.09
5439 8799 0.652592 CCGCGTATTTTGAGGAGCTG 59.347 55.000 4.92 0.00 0.00 4.24
5440 8800 1.640428 CGCGTATTTTGAGGAGCTGA 58.360 50.000 0.00 0.00 0.00 4.26
5441 8801 2.205074 CGCGTATTTTGAGGAGCTGAT 58.795 47.619 0.00 0.00 0.00 2.90
5442 8802 2.033407 CGCGTATTTTGAGGAGCTGATG 60.033 50.000 0.00 0.00 0.00 3.07
5443 8803 2.289002 GCGTATTTTGAGGAGCTGATGG 59.711 50.000 0.00 0.00 0.00 3.51
5444 8804 3.797039 CGTATTTTGAGGAGCTGATGGA 58.203 45.455 0.00 0.00 0.00 3.41
5445 8805 4.384056 CGTATTTTGAGGAGCTGATGGAT 58.616 43.478 0.00 0.00 0.00 3.41
5446 8806 4.450419 CGTATTTTGAGGAGCTGATGGATC 59.550 45.833 0.00 0.00 0.00 3.36
5450 8810 3.165456 GGAGCTGATGGATCCCCC 58.835 66.667 9.90 1.00 44.19 5.40
5458 8818 3.346734 TGGATCCCCCAACAGGCC 61.347 66.667 9.90 0.00 43.29 5.19
5459 8819 4.143301 GGATCCCCCAACAGGCCC 62.143 72.222 0.00 0.00 34.14 5.80
5460 8820 3.023735 GATCCCCCAACAGGCCCT 61.024 66.667 0.00 0.00 0.00 5.19
5461 8821 2.537959 ATCCCCCAACAGGCCCTT 60.538 61.111 0.00 0.00 0.00 3.95
5462 8822 1.230482 ATCCCCCAACAGGCCCTTA 60.230 57.895 0.00 0.00 0.00 2.69
5463 8823 1.289244 ATCCCCCAACAGGCCCTTAG 61.289 60.000 0.00 0.00 0.00 2.18
5538 8904 6.433093 ACGCAAATATAACAAAAAGGAGACCT 59.567 34.615 0.00 0.00 33.87 3.85
5576 8942 7.601130 TGTATTTATATGTTCTGATACGCCACC 59.399 37.037 0.00 0.00 0.00 4.61
5626 8997 3.829948 AGCACATACTACACGTGTGTAC 58.170 45.455 30.83 14.15 44.82 2.90
5667 9056 8.786826 TTGGAGGTATACAAAATAGTGTTCAG 57.213 34.615 5.01 0.00 32.75 3.02
5740 9129 3.026694 AGTATGGCATTTTGAAGCTCCC 58.973 45.455 4.78 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.756642 CCCAATCACAATATACACGAGCAT 59.243 41.667 0.00 0.00 0.00 3.79
25 26 3.586470 ACTTTGTACACACCCCAATCA 57.414 42.857 0.00 0.00 0.00 2.57
91 92 4.200092 GCTATGCTATATAAGTTGGGGGC 58.800 47.826 0.00 0.00 0.00 5.80
168 169 2.223735 GCCAAAGATATCGAGGTCGTGA 60.224 50.000 11.20 0.00 40.80 4.35
185 186 6.070251 TCCAGAAGAGTTGATGTATAAGCCAA 60.070 38.462 0.00 0.00 0.00 4.52
478 599 2.360165 GGAGCCTGGCTATGACATTTTG 59.640 50.000 23.44 0.00 39.88 2.44
492 613 1.298014 GGTGACCAGAAGGAGCCTG 59.702 63.158 0.00 0.00 38.69 4.85
545 667 9.255304 CCCAGAAGATAAATTTCGAAAAACAAA 57.745 29.630 15.66 0.00 0.00 2.83
546 668 8.634444 TCCCAGAAGATAAATTTCGAAAAACAA 58.366 29.630 15.66 1.45 0.00 2.83
595 718 9.093970 GTTTGCAAGTACAGTAATTTCCTTTTT 57.906 29.630 0.00 0.00 0.00 1.94
596 719 8.474831 AGTTTGCAAGTACAGTAATTTCCTTTT 58.525 29.630 0.00 0.00 0.00 2.27
597 720 8.007405 AGTTTGCAAGTACAGTAATTTCCTTT 57.993 30.769 0.00 0.00 0.00 3.11
598 721 7.582667 AGTTTGCAAGTACAGTAATTTCCTT 57.417 32.000 0.00 0.00 0.00 3.36
599 722 8.685838 TTAGTTTGCAAGTACAGTAATTTCCT 57.314 30.769 0.00 0.00 0.00 3.36
600 723 9.908152 ATTTAGTTTGCAAGTACAGTAATTTCC 57.092 29.630 0.00 0.00 0.00 3.13
603 726 9.691362 CCAATTTAGTTTGCAAGTACAGTAATT 57.309 29.630 0.00 1.73 0.00 1.40
604 727 8.856103 ACCAATTTAGTTTGCAAGTACAGTAAT 58.144 29.630 0.00 0.00 0.00 1.89
605 728 8.228035 ACCAATTTAGTTTGCAAGTACAGTAA 57.772 30.769 0.00 0.00 0.00 2.24
606 729 7.499563 TGACCAATTTAGTTTGCAAGTACAGTA 59.500 33.333 0.00 0.00 0.00 2.74
607 730 6.320164 TGACCAATTTAGTTTGCAAGTACAGT 59.680 34.615 0.00 0.00 0.00 3.55
608 731 6.636850 GTGACCAATTTAGTTTGCAAGTACAG 59.363 38.462 0.00 0.00 0.00 2.74
609 732 6.460399 GGTGACCAATTTAGTTTGCAAGTACA 60.460 38.462 0.00 0.00 0.00 2.90
610 733 5.918576 GGTGACCAATTTAGTTTGCAAGTAC 59.081 40.000 0.00 0.00 0.00 2.73
611 734 6.079424 GGTGACCAATTTAGTTTGCAAGTA 57.921 37.500 0.00 0.00 0.00 2.24
612 735 4.944048 GGTGACCAATTTAGTTTGCAAGT 58.056 39.130 0.00 0.00 0.00 3.16
660 783 2.671596 CATGCCGGATTGAACGTTTTT 58.328 42.857 5.05 0.00 0.00 1.94
1106 1521 3.006110 ACTGAATTTGACTACGACGGGAA 59.994 43.478 0.00 0.00 0.00 3.97
1162 1577 0.610174 TCAGATCAAGCAGTCGCCTT 59.390 50.000 0.00 0.00 39.83 4.35
1185 1600 2.432628 AAAAGCCTCCTCGTCGCG 60.433 61.111 0.00 0.00 0.00 5.87
1189 1604 2.635427 AGAAGAAGAAAAGCCTCCTCGT 59.365 45.455 0.00 0.00 0.00 4.18
1201 1616 4.451900 ACCAAGCGAAAGAAGAAGAAGAA 58.548 39.130 0.00 0.00 0.00 2.52
1202 1617 4.073293 ACCAAGCGAAAGAAGAAGAAGA 57.927 40.909 0.00 0.00 0.00 2.87
1203 1618 4.531332 CAACCAAGCGAAAGAAGAAGAAG 58.469 43.478 0.00 0.00 0.00 2.85
1305 1723 6.025896 CCATAGCATCATGTAATCAAATCGC 58.974 40.000 0.00 0.00 0.00 4.58
1435 1891 7.011857 GTGATGGAGAAAGCATCTAAACCTTAG 59.988 40.741 0.00 0.00 38.96 2.18
1471 1927 7.925483 TGGAAACTCCATTAACAAATGAAGTTG 59.075 33.333 3.89 0.00 42.67 3.16
1778 2260 7.709947 TCCAGAAGCTGCATTTAAAATATCAG 58.290 34.615 1.02 0.00 0.00 2.90
1944 2460 2.163412 TGGAATCGGCTGTAACAATTGC 59.837 45.455 5.05 0.00 0.00 3.56
1963 2481 7.194112 AGGTATTTTTCCCAAATGGTTATGG 57.806 36.000 0.00 0.00 36.42 2.74
1969 2487 7.718334 AACTCTAGGTATTTTTCCCAAATGG 57.282 36.000 0.00 0.00 0.00 3.16
2034 2552 7.597386 TCAGAAAGGAGTATATCATGATCACG 58.403 38.462 12.53 0.00 0.00 4.35
2118 2636 6.783708 TCTTCCTCTTCAGATTCTTCTACC 57.216 41.667 0.00 0.00 0.00 3.18
2186 2704 6.484308 TCATGCACATGAACATATACTTCCAG 59.516 38.462 10.82 0.00 44.14 3.86
2266 2784 8.647226 GGATTTTCAATTTGAATAACACCTTCG 58.353 33.333 12.39 0.00 36.11 3.79
2350 2868 8.410141 AGTAGTAAAGTCATAGATGCTTCTGAC 58.590 37.037 12.19 11.95 33.17 3.51
2351 2869 8.409371 CAGTAGTAAAGTCATAGATGCTTCTGA 58.591 37.037 12.19 0.23 33.17 3.27
2423 2941 2.806818 GGAGGAAAAGACGAGGAAACAC 59.193 50.000 0.00 0.00 0.00 3.32
2424 2942 2.436542 TGGAGGAAAAGACGAGGAAACA 59.563 45.455 0.00 0.00 0.00 2.83
2459 2977 3.056304 GCAACGCCATTTGTACAACAAT 58.944 40.909 8.07 0.00 38.00 2.71
2494 3012 6.122277 AGTTCTCCACTTCACTTTTCATGAA 58.878 36.000 3.38 3.38 34.89 2.57
2573 3091 4.152580 GTGCAAGCTTAGTTAGTTGGAGAC 59.847 45.833 0.00 0.00 0.00 3.36
2671 3189 4.491234 AACCGTCGCATTTCACAAATAA 57.509 36.364 0.00 0.00 0.00 1.40
2688 3206 5.880054 AGACAGAAAACATGGAATAACCG 57.120 39.130 0.00 0.00 42.61 4.44
2713 3231 9.109393 GGCAAGATATGATACAAAAACAGAGTA 57.891 33.333 0.00 0.00 0.00 2.59
2840 3360 9.277565 CATTGGTTTTGTTTATCTACTGATTCG 57.722 33.333 0.00 0.00 34.32 3.34
2863 3383 6.069905 TGACCACTAATATGTACCACCACATT 60.070 38.462 0.00 0.00 39.77 2.71
2905 3425 4.618227 GCAAACCAGTGGGAATGATGTAAC 60.618 45.833 15.21 0.00 38.05 2.50
2963 3483 4.326548 GCCAACATAGTGACTAGAACGAAC 59.673 45.833 0.00 0.00 0.00 3.95
2997 3524 8.999431 GTTTAACATGAAGACCATCTCTACAAA 58.001 33.333 0.00 0.00 31.94 2.83
2998 3525 8.154203 TGTTTAACATGAAGACCATCTCTACAA 58.846 33.333 0.00 0.00 31.94 2.41
3049 3576 4.814234 GTGTTCTTTCCACTCACACATACA 59.186 41.667 0.00 0.00 38.11 2.29
3051 3578 5.029807 TGTGTTCTTTCCACTCACACATA 57.970 39.130 0.00 0.00 42.12 2.29
3052 3579 3.884895 TGTGTTCTTTCCACTCACACAT 58.115 40.909 0.00 0.00 42.12 3.21
3078 3609 5.051039 GCAGATGCGAACTTCGACATAATAA 60.051 40.000 15.43 0.00 43.74 1.40
3291 3831 0.924823 AGCCATGGCCAAGAGAAGAT 59.075 50.000 33.14 7.61 43.17 2.40
3292 3832 1.583556 TAGCCATGGCCAAGAGAAGA 58.416 50.000 33.14 4.54 43.17 2.87
3293 3833 2.653234 ATAGCCATGGCCAAGAGAAG 57.347 50.000 33.14 0.00 43.17 2.85
3294 3834 5.251468 ACATATATAGCCATGGCCAAGAGAA 59.749 40.000 33.14 13.27 43.17 2.87
3345 3896 4.045104 GTGTATGCTTCTATGTGAGTCCG 58.955 47.826 0.00 0.00 0.00 4.79
3360 3911 4.770795 ACTCTCCTTATTGTGGTGTATGC 58.229 43.478 0.00 0.00 0.00 3.14
3431 3982 1.242076 GGCAACAGCTGTGAGTTCAT 58.758 50.000 22.49 0.00 0.00 2.57
3445 3996 8.981647 GTTGATGATTAAATATGATTGGGCAAC 58.018 33.333 0.00 0.00 0.00 4.17
3446 3997 8.926374 AGTTGATGATTAAATATGATTGGGCAA 58.074 29.630 0.00 0.00 0.00 4.52
3460 4011 6.210385 TGCAGGGCTTTAAAGTTGATGATTAA 59.790 34.615 16.38 0.00 0.00 1.40
3600 4153 3.369892 GCATACCAGCTTTCTCCTCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
3634 4187 6.670927 GCTGAGCTTAACAAGAACAATAGACG 60.671 42.308 0.00 0.00 0.00 4.18
3646 4199 3.811722 CAACGATGCTGAGCTTAACAA 57.188 42.857 5.83 0.00 0.00 2.83
3680 4233 7.921745 GGTAGAGGTCAAAGACTATATGTGAAC 59.078 40.741 0.00 0.00 32.47 3.18
3755 4308 4.805219 AGGTGTTAAAATGCCTTTTAGCG 58.195 39.130 13.47 0.00 39.52 4.26
3785 4338 6.164176 CCGTTGTAGATAAAGAAGTTGGAGT 58.836 40.000 0.00 0.00 0.00 3.85
3804 4357 0.038343 CCAAATTGCAGACCCCGTTG 60.038 55.000 0.00 0.00 0.00 4.10
3848 4401 6.886178 ACCATACAGAACTAGTACCCATTT 57.114 37.500 0.00 0.00 0.00 2.32
3901 5244 1.230635 CCCGTGTGCTTTCTGTCCAG 61.231 60.000 0.00 0.00 0.00 3.86
4018 5385 4.774726 ACACTCGATTGAGCCATATAGGAT 59.225 41.667 10.04 0.00 46.69 3.24
4043 5410 7.696992 TGTTGGGTTCTAATGGTCTAATTTC 57.303 36.000 0.00 0.00 0.00 2.17
4086 5453 4.806247 ACTGTGCAGATTTCTTAGTATCGC 59.194 41.667 6.17 0.00 0.00 4.58
4087 5454 7.418408 TCTACTGTGCAGATTTCTTAGTATCG 58.582 38.462 6.17 0.00 0.00 2.92
4107 5477 2.952978 CGGTGGTCTATGAAGCTCTACT 59.047 50.000 0.00 0.00 0.00 2.57
4108 5478 2.950309 TCGGTGGTCTATGAAGCTCTAC 59.050 50.000 0.00 0.00 0.00 2.59
4139 5510 2.625790 GGTTGGTGGTTGTTCATAAGCA 59.374 45.455 0.00 0.00 35.87 3.91
4142 5513 3.886505 GTCTGGTTGGTGGTTGTTCATAA 59.113 43.478 0.00 0.00 0.00 1.90
4159 5530 3.251571 GGACGCAACTAGTTTAGTCTGG 58.748 50.000 26.39 10.10 38.26 3.86
4177 5548 0.248949 GCAGGATAGTCGTTCGGGAC 60.249 60.000 0.00 0.00 37.19 4.46
4178 5549 1.389609 GGCAGGATAGTCGTTCGGGA 61.390 60.000 0.00 0.00 0.00 5.14
4179 5550 1.067582 GGCAGGATAGTCGTTCGGG 59.932 63.158 0.00 0.00 0.00 5.14
4180 5551 0.174845 TTGGCAGGATAGTCGTTCGG 59.825 55.000 0.00 0.00 0.00 4.30
4181 5552 2.004583 TTTGGCAGGATAGTCGTTCG 57.995 50.000 0.00 0.00 0.00 3.95
4182 5553 4.694339 ACTATTTGGCAGGATAGTCGTTC 58.306 43.478 15.67 0.00 34.81 3.95
4183 5554 4.755266 ACTATTTGGCAGGATAGTCGTT 57.245 40.909 15.67 0.00 34.81 3.85
4184 5555 4.894114 AGTACTATTTGGCAGGATAGTCGT 59.106 41.667 21.47 12.03 39.24 4.34
4187 5558 7.256332 CCACATAGTACTATTTGGCAGGATAGT 60.256 40.741 27.20 21.53 36.81 2.12
4191 5562 5.290493 CCACATAGTACTATTTGGCAGGA 57.710 43.478 27.20 0.00 36.81 3.86
4218 7238 2.628178 CGGAGGGAGTAGATGTTATGCA 59.372 50.000 0.00 0.00 0.00 3.96
4229 7249 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4230 7250 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4231 7251 4.699925 TTATATTTGGGAACGGAGGGAG 57.300 45.455 0.00 0.00 0.00 4.30
4232 7252 5.457052 GGAATTATATTTGGGAACGGAGGGA 60.457 44.000 0.00 0.00 0.00 4.20
4233 7253 4.765339 GGAATTATATTTGGGAACGGAGGG 59.235 45.833 0.00 0.00 0.00 4.30
4234 7254 5.631119 AGGAATTATATTTGGGAACGGAGG 58.369 41.667 0.00 0.00 0.00 4.30
4235 7255 7.582667 AAAGGAATTATATTTGGGAACGGAG 57.417 36.000 0.00 0.00 0.00 4.63
4236 7256 7.964666 AAAAGGAATTATATTTGGGAACGGA 57.035 32.000 0.00 0.00 0.00 4.69
4237 7257 9.127277 TCTAAAAGGAATTATATTTGGGAACGG 57.873 33.333 0.00 0.00 0.00 4.44
4250 7270 8.726988 CGTTGTTGGAATCTCTAAAAGGAATTA 58.273 33.333 0.00 0.00 0.00 1.40
4251 7271 7.309194 CCGTTGTTGGAATCTCTAAAAGGAATT 60.309 37.037 0.00 0.00 0.00 2.17
4252 7272 6.151144 CCGTTGTTGGAATCTCTAAAAGGAAT 59.849 38.462 0.00 0.00 0.00 3.01
4253 7273 5.472137 CCGTTGTTGGAATCTCTAAAAGGAA 59.528 40.000 0.00 0.00 0.00 3.36
4254 7274 5.001232 CCGTTGTTGGAATCTCTAAAAGGA 58.999 41.667 0.00 0.00 0.00 3.36
4255 7275 5.001232 TCCGTTGTTGGAATCTCTAAAAGG 58.999 41.667 0.00 0.00 34.30 3.11
4256 7276 5.701290 AGTCCGTTGTTGGAATCTCTAAAAG 59.299 40.000 0.00 0.00 40.44 2.27
4257 7277 5.617252 AGTCCGTTGTTGGAATCTCTAAAA 58.383 37.500 0.00 0.00 40.44 1.52
4258 7278 5.223449 AGTCCGTTGTTGGAATCTCTAAA 57.777 39.130 0.00 0.00 40.44 1.85
4259 7279 4.884668 AGTCCGTTGTTGGAATCTCTAA 57.115 40.909 0.00 0.00 40.44 2.10
4260 7280 4.768448 TGTAGTCCGTTGTTGGAATCTCTA 59.232 41.667 0.00 0.00 40.44 2.43
4261 7281 3.576982 TGTAGTCCGTTGTTGGAATCTCT 59.423 43.478 0.00 0.00 40.44 3.10
4262 7282 3.921677 TGTAGTCCGTTGTTGGAATCTC 58.078 45.455 0.00 0.00 40.44 2.75
4263 7283 4.553330 ATGTAGTCCGTTGTTGGAATCT 57.447 40.909 0.00 0.00 40.44 2.40
4264 7284 4.266976 CGTATGTAGTCCGTTGTTGGAATC 59.733 45.833 0.00 0.00 40.44 2.52
4265 7285 4.178540 CGTATGTAGTCCGTTGTTGGAAT 58.821 43.478 0.00 0.00 40.44 3.01
4266 7286 3.577667 CGTATGTAGTCCGTTGTTGGAA 58.422 45.455 0.00 0.00 40.44 3.53
4267 7287 2.094597 CCGTATGTAGTCCGTTGTTGGA 60.095 50.000 0.00 0.00 35.04 3.53
4268 7288 2.094597 TCCGTATGTAGTCCGTTGTTGG 60.095 50.000 0.00 0.00 0.00 3.77
4269 7289 3.176708 CTCCGTATGTAGTCCGTTGTTG 58.823 50.000 0.00 0.00 0.00 3.33
4270 7290 2.416431 GCTCCGTATGTAGTCCGTTGTT 60.416 50.000 0.00 0.00 0.00 2.83
4271 7291 1.133790 GCTCCGTATGTAGTCCGTTGT 59.866 52.381 0.00 0.00 0.00 3.32
4272 7292 1.133598 TGCTCCGTATGTAGTCCGTTG 59.866 52.381 0.00 0.00 0.00 4.10
4273 7293 1.466856 TGCTCCGTATGTAGTCCGTT 58.533 50.000 0.00 0.00 0.00 4.44
4274 7294 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
4275 7295 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
4276 7296 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4277 7297 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4278 7298 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4279 7299 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4280 7300 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4281 7301 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4282 7302 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4283 7303 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4284 7304 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4285 7305 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4286 7306 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4287 7307 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4288 7308 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4320 7340 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
4321 7341 9.985318 GACTACAACATACGGATGTATATAGAC 57.015 37.037 23.06 16.72 45.93 2.59
4322 7342 9.170734 GGACTACAACATACGGATGTATATAGA 57.829 37.037 23.06 5.58 45.93 1.98
4323 7343 8.953313 TGGACTACAACATACGGATGTATATAG 58.047 37.037 15.10 16.95 45.93 1.31
4324 7344 8.866970 TGGACTACAACATACGGATGTATATA 57.133 34.615 15.10 6.07 45.93 0.86
4325 7345 7.770366 TGGACTACAACATACGGATGTATAT 57.230 36.000 15.10 5.13 45.93 0.86
4326 7346 7.770366 ATGGACTACAACATACGGATGTATA 57.230 36.000 15.10 8.98 45.93 1.47
4327 7347 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
4328 7348 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
4330 7350 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
4331 7351 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
4332 7352 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
4333 7353 6.311723 GTTTCAAATGGACTACAACATACGG 58.688 40.000 0.00 0.00 0.00 4.02
4334 7354 6.148811 AGGTTTCAAATGGACTACAACATACG 59.851 38.462 0.00 0.00 0.00 3.06
4335 7355 7.390718 AGAGGTTTCAAATGGACTACAACATAC 59.609 37.037 0.00 0.00 0.00 2.39
4336 7356 7.458397 AGAGGTTTCAAATGGACTACAACATA 58.542 34.615 0.00 0.00 0.00 2.29
4337 7357 6.306987 AGAGGTTTCAAATGGACTACAACAT 58.693 36.000 0.00 0.00 0.00 2.71
4338 7358 5.690865 AGAGGTTTCAAATGGACTACAACA 58.309 37.500 0.00 0.00 0.00 3.33
4339 7359 7.739498 TTAGAGGTTTCAAATGGACTACAAC 57.261 36.000 0.00 0.00 0.00 3.32
4340 7360 8.754991 TTTTAGAGGTTTCAAATGGACTACAA 57.245 30.769 0.00 0.00 0.00 2.41
4341 7361 8.754991 TTTTTAGAGGTTTCAAATGGACTACA 57.245 30.769 0.00 0.00 0.00 2.74
4342 7362 9.063615 TCTTTTTAGAGGTTTCAAATGGACTAC 57.936 33.333 0.00 0.00 0.00 2.73
4343 7363 9.063615 GTCTTTTTAGAGGTTTCAAATGGACTA 57.936 33.333 0.00 0.00 0.00 2.59
4344 7364 7.780271 AGTCTTTTTAGAGGTTTCAAATGGACT 59.220 33.333 0.00 0.00 0.00 3.85
4345 7365 7.941919 AGTCTTTTTAGAGGTTTCAAATGGAC 58.058 34.615 0.00 0.00 0.00 4.02
4346 7366 8.533569 AAGTCTTTTTAGAGGTTTCAAATGGA 57.466 30.769 0.00 0.00 0.00 3.41
4362 7382 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4363 7383 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4364 7384 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4365 7385 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4366 7386 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4367 7387 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4368 7388 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4369 7389 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4370 7390 8.591072 CAATACTCCCTCCGTTCCTAAATATAA 58.409 37.037 0.00 0.00 0.00 0.98
4371 7391 7.951806 TCAATACTCCCTCCGTTCCTAAATATA 59.048 37.037 0.00 0.00 0.00 0.86
4372 7392 6.785963 TCAATACTCCCTCCGTTCCTAAATAT 59.214 38.462 0.00 0.00 0.00 1.28
4373 7393 6.138263 TCAATACTCCCTCCGTTCCTAAATA 58.862 40.000 0.00 0.00 0.00 1.40
4374 7394 4.966805 TCAATACTCCCTCCGTTCCTAAAT 59.033 41.667 0.00 0.00 0.00 1.40
4375 7395 4.355549 TCAATACTCCCTCCGTTCCTAAA 58.644 43.478 0.00 0.00 0.00 1.85
4376 7396 3.985127 TCAATACTCCCTCCGTTCCTAA 58.015 45.455 0.00 0.00 0.00 2.69
4377 7397 3.675348 TCAATACTCCCTCCGTTCCTA 57.325 47.619 0.00 0.00 0.00 2.94
4378 7398 2.544844 TCAATACTCCCTCCGTTCCT 57.455 50.000 0.00 0.00 0.00 3.36
4379 7399 3.622166 TTTCAATACTCCCTCCGTTCC 57.378 47.619 0.00 0.00 0.00 3.62
4380 7400 4.576879 ACTTTTCAATACTCCCTCCGTTC 58.423 43.478 0.00 0.00 0.00 3.95
4381 7401 4.635699 ACTTTTCAATACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
4382 7402 4.776308 ACTACTTTTCAATACTCCCTCCGT 59.224 41.667 0.00 0.00 0.00 4.69
4383 7403 5.340439 ACTACTTTTCAATACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
4384 7404 8.075761 TCTAACTACTTTTCAATACTCCCTCC 57.924 38.462 0.00 0.00 0.00 4.30
4385 7405 9.939802 TTTCTAACTACTTTTCAATACTCCCTC 57.060 33.333 0.00 0.00 0.00 4.30
4464 7489 6.206180 AGATTCCCTTTCTTTTTCTCTCCA 57.794 37.500 0.00 0.00 0.00 3.86
4496 7521 3.074094 AGGGCGTAGTACATATGGAGAGA 59.926 47.826 7.80 0.00 0.00 3.10
4515 7540 2.906354 CAACTAATTCCAGACGGAGGG 58.094 52.381 0.00 0.00 44.10 4.30
4524 7549 2.192664 TTGAGCGGCAACTAATTCCA 57.807 45.000 1.45 0.00 0.00 3.53
4549 7588 4.970611 CACTCAAACGGATGTATCTAGACG 59.029 45.833 0.00 0.00 0.00 4.18
4609 7648 3.727723 GCGCATAAGAGACAAAATGATGC 59.272 43.478 0.30 0.00 35.88 3.91
4756 7798 0.454285 GCAGTTATTTGCGCGCTTCA 60.454 50.000 33.29 16.32 33.90 3.02
4838 7880 7.949434 ACAGAGACCCGGTTTAAATATACTAG 58.051 38.462 0.00 0.00 0.00 2.57
4890 7933 6.055588 ACTACTTTACACTTGTCAATGCACT 58.944 36.000 0.00 0.00 0.00 4.40
5022 8065 6.172630 GGCCTCCAACACATTAAATTTCAAT 58.827 36.000 0.00 0.00 0.00 2.57
5032 8075 1.002134 CTCGGGCCTCCAACACATT 60.002 57.895 0.84 0.00 0.00 2.71
5057 8101 0.399833 TTGCTGCTCATACACCCACA 59.600 50.000 0.00 0.00 0.00 4.17
5062 8106 4.571984 TCACATATGTTGCTGCTCATACAC 59.428 41.667 5.37 0.10 30.84 2.90
5074 8118 2.097954 ACGCCTGCAATCACATATGTTG 59.902 45.455 5.37 3.52 0.00 3.33
5076 8120 1.942657 GACGCCTGCAATCACATATGT 59.057 47.619 1.41 1.41 0.00 2.29
5096 8150 4.075910 ACAACGCATGCGCTGACG 62.076 61.111 40.68 25.96 44.19 4.35
5107 8161 1.656818 CCCCATCATCCACACAACGC 61.657 60.000 0.00 0.00 0.00 4.84
5117 8171 0.250640 ATGCGCTCTTCCCCATCATC 60.251 55.000 9.73 0.00 0.00 2.92
5168 8303 4.584874 TCTTTTCGGCTATTCCATCACAA 58.415 39.130 0.00 0.00 34.01 3.33
5181 8316 0.451783 AATCGCCACATCTTTTCGGC 59.548 50.000 0.00 0.00 41.30 5.54
5183 8318 2.351418 TGCTAATCGCCACATCTTTTCG 59.649 45.455 0.00 0.00 38.05 3.46
5187 8322 1.668419 GGTGCTAATCGCCACATCTT 58.332 50.000 0.00 0.00 44.77 2.40
5196 8331 1.674441 TGTCCTACGAGGTGCTAATCG 59.326 52.381 0.00 3.95 44.36 3.34
5203 8338 4.809426 GGATGTTAATTGTCCTACGAGGTG 59.191 45.833 0.00 0.00 36.53 4.00
5204 8339 4.141779 GGGATGTTAATTGTCCTACGAGGT 60.142 45.833 0.00 0.00 36.53 3.85
5206 8341 4.141801 TGGGGATGTTAATTGTCCTACGAG 60.142 45.833 0.00 0.00 32.55 4.18
5208 8343 4.127171 CTGGGGATGTTAATTGTCCTACG 58.873 47.826 0.00 0.00 32.55 3.51
5209 8344 5.112129 ACTGGGGATGTTAATTGTCCTAC 57.888 43.478 0.00 0.00 32.55 3.18
5210 8345 6.894735 TTACTGGGGATGTTAATTGTCCTA 57.105 37.500 0.00 0.00 32.55 2.94
5211 8346 5.789574 TTACTGGGGATGTTAATTGTCCT 57.210 39.130 0.00 0.00 32.55 3.85
5212 8347 6.844097 TTTTACTGGGGATGTTAATTGTCC 57.156 37.500 0.00 0.00 0.00 4.02
5247 8607 1.080772 CCGTTAGCTGCGTCACTGA 60.081 57.895 0.00 0.00 0.00 3.41
5253 8613 4.323477 TTGGCCCGTTAGCTGCGT 62.323 61.111 0.00 0.00 0.00 5.24
5260 8620 2.356075 CACGACGTTGGCCCGTTA 60.356 61.111 8.50 0.00 41.98 3.18
5268 8628 2.101209 GAAGTGGTGGCACGACGTTG 62.101 60.000 23.99 0.00 31.79 4.10
5272 8632 0.028902 GTTTGAAGTGGTGGCACGAC 59.971 55.000 23.14 23.14 0.00 4.34
5283 8643 1.268032 CGTGCGCTTCTTGTTTGAAGT 60.268 47.619 9.73 0.00 43.74 3.01
5290 8650 1.498865 CCACTTCGTGCGCTTCTTGT 61.499 55.000 9.73 0.00 31.34 3.16
5291 8651 1.205064 CCACTTCGTGCGCTTCTTG 59.795 57.895 9.73 0.00 31.34 3.02
5295 8655 1.956170 CACTCCACTTCGTGCGCTT 60.956 57.895 9.73 0.00 31.34 4.68
5297 8657 3.414700 CCACTCCACTTCGTGCGC 61.415 66.667 0.00 0.00 31.34 6.09
5298 8658 2.709125 TTCCCACTCCACTTCGTGCG 62.709 60.000 0.00 0.00 31.34 5.34
5299 8659 0.951040 CTTCCCACTCCACTTCGTGC 60.951 60.000 0.00 0.00 31.34 5.34
5300 8660 0.393077 ACTTCCCACTCCACTTCGTG 59.607 55.000 0.00 0.00 0.00 4.35
5301 8661 0.680061 GACTTCCCACTCCACTTCGT 59.320 55.000 0.00 0.00 0.00 3.85
5303 8663 1.971357 TGAGACTTCCCACTCCACTTC 59.029 52.381 0.00 0.00 32.84 3.01
5304 8664 1.974236 CTGAGACTTCCCACTCCACTT 59.026 52.381 0.00 0.00 32.84 3.16
5305 8665 1.638529 CTGAGACTTCCCACTCCACT 58.361 55.000 0.00 0.00 32.84 4.00
5307 8667 0.178921 AGCTGAGACTTCCCACTCCA 60.179 55.000 0.00 0.00 32.84 3.86
5308 8668 0.534873 GAGCTGAGACTTCCCACTCC 59.465 60.000 0.00 0.00 32.84 3.85
5309 8669 1.204467 CAGAGCTGAGACTTCCCACTC 59.796 57.143 0.00 0.00 0.00 3.51
5310 8670 1.203112 TCAGAGCTGAGACTTCCCACT 60.203 52.381 0.00 0.00 34.14 4.00
5311 8671 1.261480 TCAGAGCTGAGACTTCCCAC 58.739 55.000 0.00 0.00 34.14 4.61
5314 8674 4.442753 CCCTAAATCAGAGCTGAGACTTCC 60.443 50.000 6.34 0.00 43.61 3.46
5320 8680 1.202746 GGCCCCTAAATCAGAGCTGAG 60.203 57.143 6.34 0.00 43.61 3.35
5349 8709 3.934962 GATCTGGGAGCGGAGGGC 61.935 72.222 0.00 0.00 44.05 5.19
5350 8710 3.610669 CGATCTGGGAGCGGAGGG 61.611 72.222 0.00 0.00 37.82 4.30
5355 8715 4.271816 CCGTCCGATCTGGGAGCG 62.272 72.222 0.00 0.00 41.31 5.03
5356 8716 2.833582 TCCGTCCGATCTGGGAGC 60.834 66.667 4.16 0.00 36.58 4.70
5357 8717 2.491022 GGTCCGTCCGATCTGGGAG 61.491 68.421 4.16 0.05 36.58 4.30
5358 8718 2.441532 GGTCCGTCCGATCTGGGA 60.442 66.667 4.16 0.00 38.76 4.37
5359 8719 2.442272 AGGTCCGTCCGATCTGGG 60.442 66.667 4.16 0.00 41.99 4.45
5360 8720 2.808315 CAGGTCCGTCCGATCTGG 59.192 66.667 0.00 0.00 44.83 3.86
5362 8722 3.518998 CGCAGGTCCGTCCGATCT 61.519 66.667 0.00 0.00 41.99 2.75
5375 8735 2.352960 GCTCTGAATTTTCTACCCGCAG 59.647 50.000 0.00 0.00 0.00 5.18
5376 8736 2.356135 GCTCTGAATTTTCTACCCGCA 58.644 47.619 0.00 0.00 0.00 5.69
5377 8737 1.327764 CGCTCTGAATTTTCTACCCGC 59.672 52.381 0.00 0.00 0.00 6.13
5378 8738 1.933853 CCGCTCTGAATTTTCTACCCG 59.066 52.381 0.00 0.00 0.00 5.28
5379 8739 1.671328 GCCGCTCTGAATTTTCTACCC 59.329 52.381 0.00 0.00 0.00 3.69
5380 8740 1.671328 GGCCGCTCTGAATTTTCTACC 59.329 52.381 0.00 0.00 0.00 3.18
5381 8741 1.327764 CGGCCGCTCTGAATTTTCTAC 59.672 52.381 14.67 0.00 0.00 2.59
5382 8742 1.206132 TCGGCCGCTCTGAATTTTCTA 59.794 47.619 23.51 0.00 0.00 2.10
5383 8743 0.036388 TCGGCCGCTCTGAATTTTCT 60.036 50.000 23.51 0.00 0.00 2.52
5384 8744 0.802494 TTCGGCCGCTCTGAATTTTC 59.198 50.000 23.51 0.00 35.24 2.29
5385 8745 1.068541 GTTTCGGCCGCTCTGAATTTT 60.069 47.619 23.51 0.00 39.64 1.82
5386 8746 0.521735 GTTTCGGCCGCTCTGAATTT 59.478 50.000 23.51 0.00 39.64 1.82
5387 8747 1.635663 CGTTTCGGCCGCTCTGAATT 61.636 55.000 23.51 0.00 39.64 2.17
5388 8748 2.100631 CGTTTCGGCCGCTCTGAAT 61.101 57.895 23.51 0.00 39.64 2.57
5389 8749 2.736995 CGTTTCGGCCGCTCTGAA 60.737 61.111 23.51 6.11 38.26 3.02
5390 8750 4.735132 CCGTTTCGGCCGCTCTGA 62.735 66.667 23.51 0.00 41.17 3.27
5400 8760 2.521958 ATCTGGGGAGCACCGTTTCG 62.522 60.000 0.00 0.00 41.60 3.46
5401 8761 0.744771 GATCTGGGGAGCACCGTTTC 60.745 60.000 0.00 0.00 41.60 2.78
5402 8762 1.299976 GATCTGGGGAGCACCGTTT 59.700 57.895 0.00 0.00 41.60 3.60
5403 8763 2.670148 GGATCTGGGGAGCACCGTT 61.670 63.158 0.00 0.00 41.60 4.44
5404 8764 3.083997 GGATCTGGGGAGCACCGT 61.084 66.667 0.00 0.00 41.60 4.83
5405 8765 4.227134 CGGATCTGGGGAGCACCG 62.227 72.222 0.00 0.00 41.60 4.94
5406 8766 4.554036 GCGGATCTGGGGAGCACC 62.554 72.222 3.14 0.00 39.11 5.01
5407 8767 4.899239 CGCGGATCTGGGGAGCAC 62.899 72.222 10.72 0.00 0.00 4.40
5409 8769 2.100879 AATACGCGGATCTGGGGAGC 62.101 60.000 21.45 4.12 0.00 4.70
5410 8770 0.393077 AAATACGCGGATCTGGGGAG 59.607 55.000 21.45 0.45 0.00 4.30
5411 8771 0.834612 AAAATACGCGGATCTGGGGA 59.165 50.000 21.45 14.67 0.00 4.81
5412 8772 0.944386 CAAAATACGCGGATCTGGGG 59.056 55.000 21.45 10.92 0.00 4.96
5413 8773 1.867233 CTCAAAATACGCGGATCTGGG 59.133 52.381 16.59 16.59 0.00 4.45
5414 8774 1.867233 CCTCAAAATACGCGGATCTGG 59.133 52.381 12.47 2.26 0.00 3.86
5415 8775 2.797156 CTCCTCAAAATACGCGGATCTG 59.203 50.000 12.47 9.15 0.00 2.90
5416 8776 2.803492 GCTCCTCAAAATACGCGGATCT 60.803 50.000 12.47 0.00 0.00 2.75
5417 8777 1.527311 GCTCCTCAAAATACGCGGATC 59.473 52.381 12.47 0.00 0.00 3.36
5418 8778 1.139058 AGCTCCTCAAAATACGCGGAT 59.861 47.619 12.47 3.58 0.00 4.18
5419 8779 0.535335 AGCTCCTCAAAATACGCGGA 59.465 50.000 12.47 0.00 0.00 5.54
5420 8780 0.652592 CAGCTCCTCAAAATACGCGG 59.347 55.000 12.47 0.00 0.00 6.46
5421 8781 1.640428 TCAGCTCCTCAAAATACGCG 58.360 50.000 3.53 3.53 0.00 6.01
5422 8782 2.289002 CCATCAGCTCCTCAAAATACGC 59.711 50.000 0.00 0.00 0.00 4.42
5423 8783 3.797039 TCCATCAGCTCCTCAAAATACG 58.203 45.455 0.00 0.00 0.00 3.06
5424 8784 4.759183 GGATCCATCAGCTCCTCAAAATAC 59.241 45.833 6.95 0.00 0.00 1.89
5425 8785 4.202503 GGGATCCATCAGCTCCTCAAAATA 60.203 45.833 15.23 0.00 0.00 1.40
5426 8786 3.436180 GGGATCCATCAGCTCCTCAAAAT 60.436 47.826 15.23 0.00 0.00 1.82
5427 8787 2.092212 GGGATCCATCAGCTCCTCAAAA 60.092 50.000 15.23 0.00 0.00 2.44
5428 8788 1.492176 GGGATCCATCAGCTCCTCAAA 59.508 52.381 15.23 0.00 0.00 2.69
5429 8789 1.135094 GGGATCCATCAGCTCCTCAA 58.865 55.000 15.23 0.00 0.00 3.02
5430 8790 0.765903 GGGGATCCATCAGCTCCTCA 60.766 60.000 15.23 0.00 29.39 3.86
5431 8791 1.487850 GGGGGATCCATCAGCTCCTC 61.488 65.000 15.23 0.00 35.00 3.71
5432 8792 1.463018 GGGGGATCCATCAGCTCCT 60.463 63.158 15.23 0.00 35.00 3.69
5433 8793 1.355718 TTGGGGGATCCATCAGCTCC 61.356 60.000 15.23 3.02 46.52 4.70
5434 8794 0.179006 GTTGGGGGATCCATCAGCTC 60.179 60.000 15.23 0.00 46.52 4.09
5435 8795 0.920763 TGTTGGGGGATCCATCAGCT 60.921 55.000 15.23 0.00 46.52 4.24
5436 8796 1.614711 TGTTGGGGGATCCATCAGC 59.385 57.895 15.23 13.01 46.52 4.26
5438 8798 1.936767 GCCTGTTGGGGGATCCATCA 61.937 60.000 15.23 8.15 46.52 3.07
5439 8799 1.152673 GCCTGTTGGGGGATCCATC 60.153 63.158 15.23 5.31 46.52 3.51
5440 8800 2.704424 GGCCTGTTGGGGGATCCAT 61.704 63.158 15.23 0.00 46.52 3.41
5441 8801 3.346734 GGCCTGTTGGGGGATCCA 61.347 66.667 15.23 0.00 45.43 3.41
5442 8802 4.143301 GGGCCTGTTGGGGGATCC 62.143 72.222 1.92 1.92 35.12 3.36
5443 8803 1.286305 TAAGGGCCTGTTGGGGGATC 61.286 60.000 6.92 0.00 35.12 3.36
5444 8804 1.230482 TAAGGGCCTGTTGGGGGAT 60.230 57.895 6.92 0.00 35.12 3.85
5445 8805 1.928567 CTAAGGGCCTGTTGGGGGA 60.929 63.158 6.92 0.00 35.12 4.81
5446 8806 2.211468 GACTAAGGGCCTGTTGGGGG 62.211 65.000 6.92 0.00 35.12 5.40
5447 8807 1.208165 AGACTAAGGGCCTGTTGGGG 61.208 60.000 6.92 0.00 35.12 4.96
5448 8808 0.253327 GAGACTAAGGGCCTGTTGGG 59.747 60.000 6.92 0.00 38.36 4.12
5449 8809 0.253327 GGAGACTAAGGGCCTGTTGG 59.747 60.000 6.92 0.00 0.00 3.77
5450 8810 0.253327 GGGAGACTAAGGGCCTGTTG 59.747 60.000 6.92 2.56 0.00 3.33
5451 8811 0.178873 TGGGAGACTAAGGGCCTGTT 60.179 55.000 6.92 0.00 0.00 3.16
5452 8812 0.178873 TTGGGAGACTAAGGGCCTGT 60.179 55.000 6.92 0.00 0.00 4.00
5453 8813 0.253327 GTTGGGAGACTAAGGGCCTG 59.747 60.000 6.92 0.00 0.00 4.85
5454 8814 0.178873 TGTTGGGAGACTAAGGGCCT 60.179 55.000 0.00 0.00 0.00 5.19
5455 8815 0.253327 CTGTTGGGAGACTAAGGGCC 59.747 60.000 0.00 0.00 0.00 5.80
5456 8816 1.066071 GTCTGTTGGGAGACTAAGGGC 60.066 57.143 0.00 0.00 39.52 5.19
5508 8873 8.514136 TCCTTTTTGTTATATTTGCGTCAAAG 57.486 30.769 10.06 0.00 36.76 2.77
5564 8930 8.948631 ATATATATTTTCAGGTGGCGTATCAG 57.051 34.615 0.00 0.00 0.00 2.90
5683 9072 4.227864 AGATTTGGAGGACAGATTCACC 57.772 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.