Multiple sequence alignment - TraesCS3D01G290900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G290900 chr3D 100.000 5620 0 0 950 6569 400998571 400992952 0.000000e+00 10379.0
1 TraesCS3D01G290900 chr3D 100.000 601 0 0 1 601 400999520 400998920 0.000000e+00 1110.0
2 TraesCS3D01G290900 chr3D 88.612 641 35 13 1253 1892 299392325 299391722 0.000000e+00 745.0
3 TraesCS3D01G290900 chr3D 89.078 586 37 7 1267 1852 24869994 24870552 0.000000e+00 702.0
4 TraesCS3D01G290900 chr3A 95.285 2015 57 13 4564 6569 521305754 521303769 0.000000e+00 3160.0
5 TraesCS3D01G290900 chr3A 92.870 2146 100 23 2406 4535 521307860 521305752 0.000000e+00 3066.0
6 TraesCS3D01G290900 chr3A 92.280 1127 61 8 1252 2366 336871083 336869971 0.000000e+00 1576.0
7 TraesCS3D01G290900 chr3A 83.540 322 20 13 284 601 521308775 521308483 3.020000e-68 270.0
8 TraesCS3D01G290900 chr3A 86.131 137 18 1 3130 3266 714331303 714331438 5.310000e-31 147.0
9 TraesCS3D01G290900 chr3B 90.805 1392 71 17 2406 3770 526698175 526696814 0.000000e+00 1808.0
10 TraesCS3D01G290900 chr3B 94.511 1093 46 7 4566 5653 526696086 526695003 0.000000e+00 1674.0
11 TraesCS3D01G290900 chr3B 94.235 902 24 3 5694 6568 526694753 526693853 0.000000e+00 1352.0
12 TraesCS3D01G290900 chr3B 91.841 907 47 5 1463 2360 729169634 729170522 0.000000e+00 1240.0
13 TraesCS3D01G290900 chr3B 93.407 728 31 9 3804 4519 526696812 526696090 0.000000e+00 1062.0
14 TraesCS3D01G290900 chr3B 85.656 244 8 8 358 601 526699045 526698829 1.420000e-56 231.0
15 TraesCS3D01G290900 chr3B 81.481 135 15 6 3159 3286 215607818 215607949 1.170000e-17 102.0
16 TraesCS3D01G290900 chr3B 89.041 73 6 1 63 135 731268802 731268732 9.070000e-14 89.8
17 TraesCS3D01G290900 chr3B 100.000 45 0 0 5651 5695 526694900 526694856 4.220000e-12 84.2
18 TraesCS3D01G290900 chr5D 94.360 1117 46 7 1254 2367 292276992 292275890 0.000000e+00 1698.0
19 TraesCS3D01G290900 chr5D 96.154 208 7 1 1252 1458 370109768 370109975 8.160000e-89 339.0
20 TraesCS3D01G290900 chr5D 91.156 147 13 0 58 204 485001177 485001323 4.020000e-47 200.0
21 TraesCS3D01G290900 chr5D 85.938 128 16 1 3137 3264 222428937 222429062 1.150000e-27 135.0
22 TraesCS3D01G290900 chr5D 84.397 141 19 2 3128 3267 254521510 254521648 1.150000e-27 135.0
23 TraesCS3D01G290900 chr5D 81.301 123 12 8 3148 3267 424163060 424163174 9.070000e-14 89.8
24 TraesCS3D01G290900 chr2A 93.029 1119 65 5 1252 2360 740046366 740045251 0.000000e+00 1622.0
25 TraesCS3D01G290900 chr2A 95.561 428 17 2 1933 2360 58996303 58996728 0.000000e+00 684.0
26 TraesCS3D01G290900 chr2A 89.930 427 29 4 1495 1921 32992697 32992285 7.500000e-149 538.0
27 TraesCS3D01G290900 chr2A 89.930 427 30 3 1495 1921 32996819 32996406 7.500000e-149 538.0
28 TraesCS3D01G290900 chr2A 84.416 154 21 2 3136 3288 79316152 79316001 1.480000e-31 148.0
29 TraesCS3D01G290900 chr6D 89.366 1119 52 26 1253 2360 436886331 436885269 0.000000e+00 1345.0
30 TraesCS3D01G290900 chr6D 82.000 150 24 2 3136 3285 48676043 48675897 2.490000e-24 124.0
31 TraesCS3D01G290900 chr6B 91.266 916 46 6 1463 2360 656181046 656180147 0.000000e+00 1218.0
32 TraesCS3D01G290900 chr6B 95.794 214 8 1 1253 1465 656181299 656181086 1.750000e-90 344.0
33 TraesCS3D01G290900 chr6A 92.575 633 33 6 1742 2362 575287089 575287719 0.000000e+00 896.0
34 TraesCS3D01G290900 chr6A 90.955 199 18 0 1495 1693 575278180 575278378 1.090000e-67 268.0
35 TraesCS3D01G290900 chr6A 94.444 36 1 1 1463 1498 575278103 575278137 3.000000e-03 54.7
36 TraesCS3D01G290900 chr2B 97.297 407 10 1 1954 2360 765218544 765218949 0.000000e+00 689.0
37 TraesCS3D01G290900 chr2B 82.781 151 24 1 3136 3286 566624821 566624969 4.130000e-27 134.0
38 TraesCS3D01G290900 chr2B 91.304 69 6 0 63 131 476575364 476575296 1.950000e-15 95.3
39 TraesCS3D01G290900 chr4B 96.822 409 12 1 1954 2362 650953122 650952715 0.000000e+00 682.0
40 TraesCS3D01G290900 chr4B 79.646 113 19 4 6011 6121 227095269 227095159 1.960000e-10 78.7
41 TraesCS3D01G290900 chr5A 96.806 407 12 1 1954 2360 631741922 631741517 0.000000e+00 678.0
42 TraesCS3D01G290900 chr5A 79.577 142 17 5 63 204 503979639 503979510 2.520000e-14 91.6
43 TraesCS3D01G290900 chrUn 90.398 427 27 4 1495 1921 12868556 12868968 3.460000e-152 549.0
44 TraesCS3D01G290900 chr7B 95.673 208 8 1 1252 1458 711499061 711498854 3.800000e-87 333.0
45 TraesCS3D01G290900 chr4A 89.167 120 9 2 3148 3267 649809675 649809790 5.310000e-31 147.0
46 TraesCS3D01G290900 chr7D 84.722 144 18 3 3136 3278 101394291 101394431 2.470000e-29 141.0
47 TraesCS3D01G290900 chr1A 84.892 139 19 1 3150 3288 382249639 382249503 8.880000e-29 139.0
48 TraesCS3D01G290900 chr1A 80.519 154 10 5 1 135 405778611 405778459 4.190000e-17 100.0
49 TraesCS3D01G290900 chr1A 79.870 154 11 5 1 135 405777794 405777642 1.950000e-15 95.3
50 TraesCS3D01G290900 chr1D 83.007 153 24 1 3136 3288 305226442 305226292 3.190000e-28 137.0
51 TraesCS3D01G290900 chr2D 85.496 131 15 3 3136 3266 555108601 555108727 4.130000e-27 134.0
52 TraesCS3D01G290900 chr2D 85.841 113 12 4 6011 6121 579594895 579595005 4.160000e-22 117.0
53 TraesCS3D01G290900 chr4D 83.673 147 11 5 58 204 64559546 64559413 6.920000e-25 126.0
54 TraesCS3D01G290900 chr4D 83.688 141 10 5 58 198 64560424 64560297 3.220000e-23 121.0
55 TraesCS3D01G290900 chr7A 79.592 147 24 5 3141 3285 104802959 104803101 4.190000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G290900 chr3D 400992952 400999520 6568 True 5744.500000 10379 100.000000 1 6569 2 chr3D.!!$R2 6568
1 TraesCS3D01G290900 chr3D 299391722 299392325 603 True 745.000000 745 88.612000 1253 1892 1 chr3D.!!$R1 639
2 TraesCS3D01G290900 chr3D 24869994 24870552 558 False 702.000000 702 89.078000 1267 1852 1 chr3D.!!$F1 585
3 TraesCS3D01G290900 chr3A 521303769 521308775 5006 True 2165.333333 3160 90.565000 284 6569 3 chr3A.!!$R2 6285
4 TraesCS3D01G290900 chr3A 336869971 336871083 1112 True 1576.000000 1576 92.280000 1252 2366 1 chr3A.!!$R1 1114
5 TraesCS3D01G290900 chr3B 729169634 729170522 888 False 1240.000000 1240 91.841000 1463 2360 1 chr3B.!!$F2 897
6 TraesCS3D01G290900 chr3B 526693853 526699045 5192 True 1035.200000 1808 93.102333 358 6568 6 chr3B.!!$R2 6210
7 TraesCS3D01G290900 chr5D 292275890 292276992 1102 True 1698.000000 1698 94.360000 1254 2367 1 chr5D.!!$R1 1113
8 TraesCS3D01G290900 chr2A 740045251 740046366 1115 True 1622.000000 1622 93.029000 1252 2360 1 chr2A.!!$R2 1108
9 TraesCS3D01G290900 chr2A 32992285 32996819 4534 True 538.000000 538 89.930000 1495 1921 2 chr2A.!!$R3 426
10 TraesCS3D01G290900 chr6D 436885269 436886331 1062 True 1345.000000 1345 89.366000 1253 2360 1 chr6D.!!$R2 1107
11 TraesCS3D01G290900 chr6B 656180147 656181299 1152 True 781.000000 1218 93.530000 1253 2360 2 chr6B.!!$R1 1107
12 TraesCS3D01G290900 chr6A 575287089 575287719 630 False 896.000000 896 92.575000 1742 2362 1 chr6A.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.036483 TACAAGCGATGGCAGAAGCA 60.036 50.000 12.82 0.00 44.61 3.91 F
177 178 0.106819 GATGTGGCTGGCTTCATCCT 60.107 55.000 20.04 1.85 33.01 3.24 F
179 180 0.253044 TGTGGCTGGCTTCATCCTAC 59.747 55.000 2.00 0.00 0.00 3.18 F
475 480 0.402861 AACCCACTCCCCTCCTTCAA 60.403 55.000 0.00 0.00 0.00 2.69 F
476 481 0.402861 ACCCACTCCCCTCCTTCAAA 60.403 55.000 0.00 0.00 0.00 2.69 F
477 482 0.777446 CCCACTCCCCTCCTTCAAAA 59.223 55.000 0.00 0.00 0.00 2.44 F
508 513 1.008571 ACTCCCCTACCCTTCTTCTCC 59.991 57.143 0.00 0.00 0.00 3.71 F
1036 1078 1.064832 AGCTCTTGGAGAAATGGGAGC 60.065 52.381 0.00 0.00 44.21 4.70 F
1056 1098 1.741706 CAAGATGACGATGCCAAGCTT 59.258 47.619 0.00 0.00 0.00 3.74 F
2601 2785 1.078426 AGTCCCCGTGCTGTATTGC 60.078 57.895 0.00 0.00 0.00 3.56 F
3366 3577 0.558712 TGTAGGTTTTTGCCACCCCT 59.441 50.000 0.00 0.00 34.44 4.79 F
4330 4548 0.806868 TCAGTAACTACCAGTCCGCG 59.193 55.000 0.00 0.00 0.00 6.46 F
4934 5162 2.125512 GGAGTGCGGTGTAGGCTG 60.126 66.667 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1056 1.101331 CCCATTTCTCCAAGAGCTGC 58.899 55.000 0.00 0.00 0.00 5.25 R
1036 1078 1.376543 AGCTTGGCATCGTCATCTTG 58.623 50.000 0.00 0.00 0.00 3.02 R
1525 1674 1.946768 GACAGGTAGCAACAACAGCAA 59.053 47.619 0.00 0.00 0.00 3.91 R
2393 2565 0.438830 CGCAGGACACGAGTTTTAGC 59.561 55.000 0.00 0.00 0.00 3.09 R
2394 2566 1.719780 GTCGCAGGACACGAGTTTTAG 59.280 52.381 0.00 0.00 42.91 1.85 R
2395 2567 1.774639 GTCGCAGGACACGAGTTTTA 58.225 50.000 0.00 0.00 42.91 1.52 R
2495 2679 1.059584 TCCTGCTCCCTGTTGACCAA 61.060 55.000 0.00 0.00 0.00 3.67 R
2587 2771 0.464373 ATCAGGCAATACAGCACGGG 60.464 55.000 0.00 0.00 35.83 5.28 R
2852 3036 3.443681 CACCCATGACAAGTCCATTAACC 59.556 47.826 0.00 0.00 0.00 2.85 R
4327 4545 0.179282 GTGTAGAACGAGCAAACGCG 60.179 55.000 3.53 3.53 45.37 6.01 R
4934 5162 0.686789 ATGCAAGCAAAAGAACCCCC 59.313 50.000 0.00 0.00 0.00 5.40 R
5235 5467 1.292941 TGAGAGAGGGGAGGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69 R
6440 9908 0.740868 TGAGCTTGGATTTCTCGCGG 60.741 55.000 6.13 0.00 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.875713 CGGGGCGGAAGGGGATTG 62.876 72.222 0.00 0.00 0.00 2.67
36 37 4.522975 GGGGCGGAAGGGGATTGG 62.523 72.222 0.00 0.00 0.00 3.16
37 38 4.522975 GGGCGGAAGGGGATTGGG 62.523 72.222 0.00 0.00 0.00 4.12
38 39 4.522975 GGCGGAAGGGGATTGGGG 62.523 72.222 0.00 0.00 0.00 4.96
39 40 4.522975 GCGGAAGGGGATTGGGGG 62.523 72.222 0.00 0.00 0.00 5.40
40 41 4.522975 CGGAAGGGGATTGGGGGC 62.523 72.222 0.00 0.00 0.00 5.80
41 42 3.029981 GGAAGGGGATTGGGGGCT 61.030 66.667 0.00 0.00 0.00 5.19
42 43 1.699930 GGAAGGGGATTGGGGGCTA 60.700 63.158 0.00 0.00 0.00 3.93
43 44 1.720077 GGAAGGGGATTGGGGGCTAG 61.720 65.000 0.00 0.00 0.00 3.42
44 45 1.701390 AAGGGGATTGGGGGCTAGG 60.701 63.158 0.00 0.00 0.00 3.02
45 46 2.369706 GGGGATTGGGGGCTAGGT 60.370 66.667 0.00 0.00 0.00 3.08
46 47 2.012794 GGGGATTGGGGGCTAGGTT 61.013 63.158 0.00 0.00 0.00 3.50
47 48 1.590339 GGGGATTGGGGGCTAGGTTT 61.590 60.000 0.00 0.00 0.00 3.27
48 49 0.338467 GGGATTGGGGGCTAGGTTTT 59.662 55.000 0.00 0.00 0.00 2.43
49 50 1.485124 GGATTGGGGGCTAGGTTTTG 58.515 55.000 0.00 0.00 0.00 2.44
50 51 1.006639 GGATTGGGGGCTAGGTTTTGA 59.993 52.381 0.00 0.00 0.00 2.69
51 52 2.100197 GATTGGGGGCTAGGTTTTGAC 58.900 52.381 0.00 0.00 0.00 3.18
52 53 0.113580 TTGGGGGCTAGGTTTTGACC 59.886 55.000 0.00 0.00 0.00 4.02
53 54 1.378119 GGGGGCTAGGTTTTGACCG 60.378 63.158 0.00 0.00 34.28 4.79
54 55 2.044555 GGGGCTAGGTTTTGACCGC 61.045 63.158 0.00 0.00 34.28 5.68
55 56 1.002502 GGGCTAGGTTTTGACCGCT 60.003 57.895 0.00 0.00 34.28 5.52
56 57 0.608308 GGGCTAGGTTTTGACCGCTT 60.608 55.000 0.00 0.00 34.28 4.68
57 58 0.521735 GGCTAGGTTTTGACCGCTTG 59.478 55.000 0.00 0.00 34.28 4.01
58 59 0.109735 GCTAGGTTTTGACCGCTTGC 60.110 55.000 0.00 0.00 34.28 4.01
59 60 1.523758 CTAGGTTTTGACCGCTTGCT 58.476 50.000 0.00 0.00 34.28 3.91
60 61 1.464997 CTAGGTTTTGACCGCTTGCTC 59.535 52.381 0.00 0.00 34.28 4.26
61 62 0.465460 AGGTTTTGACCGCTTGCTCA 60.465 50.000 0.00 0.00 34.28 4.26
62 63 0.383949 GGTTTTGACCGCTTGCTCAA 59.616 50.000 0.00 0.00 0.00 3.02
63 64 1.000274 GGTTTTGACCGCTTGCTCAAT 60.000 47.619 0.00 0.00 0.00 2.57
64 65 2.545742 GGTTTTGACCGCTTGCTCAATT 60.546 45.455 0.00 0.00 0.00 2.32
65 66 3.123050 GTTTTGACCGCTTGCTCAATTT 58.877 40.909 0.00 0.00 0.00 1.82
66 67 4.295051 GTTTTGACCGCTTGCTCAATTTA 58.705 39.130 0.00 0.00 0.00 1.40
67 68 4.782019 TTTGACCGCTTGCTCAATTTAT 57.218 36.364 0.00 0.00 0.00 1.40
68 69 5.888691 TTTGACCGCTTGCTCAATTTATA 57.111 34.783 0.00 0.00 0.00 0.98
69 70 4.875544 TGACCGCTTGCTCAATTTATAC 57.124 40.909 0.00 0.00 0.00 1.47
70 71 3.625764 TGACCGCTTGCTCAATTTATACC 59.374 43.478 0.00 0.00 0.00 2.73
71 72 2.949644 ACCGCTTGCTCAATTTATACCC 59.050 45.455 0.00 0.00 0.00 3.69
72 73 2.293399 CCGCTTGCTCAATTTATACCCC 59.707 50.000 0.00 0.00 0.00 4.95
73 74 3.214328 CGCTTGCTCAATTTATACCCCT 58.786 45.455 0.00 0.00 0.00 4.79
74 75 3.632145 CGCTTGCTCAATTTATACCCCTT 59.368 43.478 0.00 0.00 0.00 3.95
75 76 4.261197 CGCTTGCTCAATTTATACCCCTTC 60.261 45.833 0.00 0.00 0.00 3.46
76 77 4.644685 GCTTGCTCAATTTATACCCCTTCA 59.355 41.667 0.00 0.00 0.00 3.02
77 78 5.450550 GCTTGCTCAATTTATACCCCTTCAC 60.451 44.000 0.00 0.00 0.00 3.18
78 79 4.196193 TGCTCAATTTATACCCCTTCACG 58.804 43.478 0.00 0.00 0.00 4.35
79 80 4.196971 GCTCAATTTATACCCCTTCACGT 58.803 43.478 0.00 0.00 0.00 4.49
80 81 4.035208 GCTCAATTTATACCCCTTCACGTG 59.965 45.833 9.94 9.94 0.00 4.49
81 82 5.423704 TCAATTTATACCCCTTCACGTGA 57.576 39.130 15.76 15.76 0.00 4.35
82 83 5.806818 TCAATTTATACCCCTTCACGTGAA 58.193 37.500 28.07 28.07 0.00 3.18
83 84 6.239396 TCAATTTATACCCCTTCACGTGAAA 58.761 36.000 29.32 16.30 33.07 2.69
84 85 6.715718 TCAATTTATACCCCTTCACGTGAAAA 59.284 34.615 29.32 18.84 33.07 2.29
85 86 6.753107 ATTTATACCCCTTCACGTGAAAAG 57.247 37.500 29.32 22.66 33.07 2.27
86 87 5.486735 TTATACCCCTTCACGTGAAAAGA 57.513 39.130 29.32 14.67 33.07 2.52
87 88 1.963172 ACCCCTTCACGTGAAAAGAC 58.037 50.000 29.32 0.00 33.07 3.01
88 89 1.235724 CCCCTTCACGTGAAAAGACC 58.764 55.000 29.32 0.00 33.07 3.85
89 90 1.476110 CCCCTTCACGTGAAAAGACCA 60.476 52.381 29.32 8.02 33.07 4.02
90 91 2.294074 CCCTTCACGTGAAAAGACCAA 58.706 47.619 29.32 7.27 33.07 3.67
91 92 2.685897 CCCTTCACGTGAAAAGACCAAA 59.314 45.455 29.32 6.53 33.07 3.28
92 93 3.129638 CCCTTCACGTGAAAAGACCAAAA 59.870 43.478 29.32 5.79 33.07 2.44
93 94 4.202111 CCCTTCACGTGAAAAGACCAAAAT 60.202 41.667 29.32 0.00 33.07 1.82
94 95 4.739716 CCTTCACGTGAAAAGACCAAAATG 59.260 41.667 29.32 14.15 33.07 2.32
95 96 3.701241 TCACGTGAAAAGACCAAAATGC 58.299 40.909 17.62 0.00 0.00 3.56
96 97 2.794350 CACGTGAAAAGACCAAAATGCC 59.206 45.455 10.90 0.00 0.00 4.40
97 98 2.223947 ACGTGAAAAGACCAAAATGCCC 60.224 45.455 0.00 0.00 0.00 5.36
98 99 2.035832 CGTGAAAAGACCAAAATGCCCT 59.964 45.455 0.00 0.00 0.00 5.19
99 100 3.653344 GTGAAAAGACCAAAATGCCCTC 58.347 45.455 0.00 0.00 0.00 4.30
100 101 2.295909 TGAAAAGACCAAAATGCCCTCG 59.704 45.455 0.00 0.00 0.00 4.63
101 102 1.256812 AAAGACCAAAATGCCCTCGG 58.743 50.000 0.00 0.00 0.00 4.63
114 115 4.157120 CTCGGCGGGGAACGGAAT 62.157 66.667 7.21 0.00 44.51 3.01
115 116 3.675619 CTCGGCGGGGAACGGAATT 62.676 63.158 7.21 0.00 44.51 2.17
116 117 2.748647 CGGCGGGGAACGGAATTT 60.749 61.111 0.00 0.00 44.51 1.82
117 118 1.449956 CGGCGGGGAACGGAATTTA 60.450 57.895 0.00 0.00 44.51 1.40
118 119 1.708193 CGGCGGGGAACGGAATTTAC 61.708 60.000 0.00 0.00 44.51 2.01
119 120 0.677414 GGCGGGGAACGGAATTTACA 60.677 55.000 0.00 0.00 44.51 2.41
120 121 1.166989 GCGGGGAACGGAATTTACAA 58.833 50.000 0.00 0.00 44.51 2.41
121 122 1.131693 GCGGGGAACGGAATTTACAAG 59.868 52.381 0.00 0.00 44.51 3.16
122 123 1.131693 CGGGGAACGGAATTTACAAGC 59.868 52.381 0.00 0.00 39.42 4.01
123 124 1.131693 GGGGAACGGAATTTACAAGCG 59.868 52.381 0.00 0.00 0.00 4.68
124 125 2.078392 GGGAACGGAATTTACAAGCGA 58.922 47.619 0.00 0.00 0.00 4.93
125 126 2.681344 GGGAACGGAATTTACAAGCGAT 59.319 45.455 0.00 0.00 0.00 4.58
126 127 3.486875 GGGAACGGAATTTACAAGCGATG 60.487 47.826 0.00 0.00 0.00 3.84
127 128 3.486875 GGAACGGAATTTACAAGCGATGG 60.487 47.826 0.00 0.00 0.00 3.51
128 129 1.400494 ACGGAATTTACAAGCGATGGC 59.600 47.619 0.00 0.00 40.37 4.40
129 130 1.400142 CGGAATTTACAAGCGATGGCA 59.600 47.619 1.50 0.00 43.41 4.92
130 131 2.539547 CGGAATTTACAAGCGATGGCAG 60.540 50.000 1.50 0.00 43.41 4.85
131 132 2.682856 GGAATTTACAAGCGATGGCAGA 59.317 45.455 1.50 0.00 43.41 4.26
132 133 3.128589 GGAATTTACAAGCGATGGCAGAA 59.871 43.478 1.50 0.00 43.41 3.02
133 134 4.346129 GAATTTACAAGCGATGGCAGAAG 58.654 43.478 1.50 0.00 43.41 2.85
134 135 1.086696 TTACAAGCGATGGCAGAAGC 58.913 50.000 1.50 0.00 43.41 3.86
135 136 0.036483 TACAAGCGATGGCAGAAGCA 60.036 50.000 12.82 0.00 44.61 3.91
136 137 1.136147 CAAGCGATGGCAGAAGCAC 59.864 57.895 12.82 0.00 44.61 4.40
137 138 1.002868 AAGCGATGGCAGAAGCACT 60.003 52.632 12.82 0.00 44.61 4.40
147 148 2.983402 CAGAAGCACTGTTCATGGTG 57.017 50.000 0.00 0.00 41.30 4.17
148 149 2.497138 CAGAAGCACTGTTCATGGTGA 58.503 47.619 4.25 0.00 41.30 4.02
149 150 2.880268 CAGAAGCACTGTTCATGGTGAA 59.120 45.455 4.25 0.00 41.30 3.18
150 151 3.504906 CAGAAGCACTGTTCATGGTGAAT 59.495 43.478 4.25 0.00 38.79 2.57
151 152 4.022589 CAGAAGCACTGTTCATGGTGAATT 60.023 41.667 4.25 0.00 38.79 2.17
152 153 5.181811 CAGAAGCACTGTTCATGGTGAATTA 59.818 40.000 4.25 0.00 38.79 1.40
153 154 5.413833 AGAAGCACTGTTCATGGTGAATTAG 59.586 40.000 4.25 1.60 38.79 1.73
154 155 4.910195 AGCACTGTTCATGGTGAATTAGA 58.090 39.130 4.25 0.00 38.79 2.10
155 156 4.940046 AGCACTGTTCATGGTGAATTAGAG 59.060 41.667 4.25 6.83 38.79 2.43
156 157 4.095483 GCACTGTTCATGGTGAATTAGAGG 59.905 45.833 4.25 6.52 38.79 3.69
157 158 4.095483 CACTGTTCATGGTGAATTAGAGGC 59.905 45.833 11.37 0.00 38.79 4.70
158 159 3.270027 TGTTCATGGTGAATTAGAGGCG 58.730 45.455 0.00 0.00 38.79 5.52
159 160 3.055458 TGTTCATGGTGAATTAGAGGCGA 60.055 43.478 0.00 0.00 38.79 5.54
160 161 4.130118 GTTCATGGTGAATTAGAGGCGAT 58.870 43.478 0.00 0.00 38.79 4.58
161 162 3.732212 TCATGGTGAATTAGAGGCGATG 58.268 45.455 0.00 0.00 0.00 3.84
162 163 3.134623 TCATGGTGAATTAGAGGCGATGT 59.865 43.478 0.00 0.00 0.00 3.06
163 164 2.905075 TGGTGAATTAGAGGCGATGTG 58.095 47.619 0.00 0.00 0.00 3.21
164 165 2.213499 GGTGAATTAGAGGCGATGTGG 58.787 52.381 0.00 0.00 0.00 4.17
165 166 1.599542 GTGAATTAGAGGCGATGTGGC 59.400 52.381 0.00 0.00 45.27 5.01
172 173 3.512516 GGCGATGTGGCTGGCTTC 61.513 66.667 2.00 0.00 40.72 3.86
173 174 2.747460 GCGATGTGGCTGGCTTCA 60.747 61.111 2.00 2.55 0.00 3.02
174 175 2.117156 GCGATGTGGCTGGCTTCAT 61.117 57.895 2.00 7.41 0.00 2.57
175 176 2.020131 CGATGTGGCTGGCTTCATC 58.980 57.895 20.45 20.45 34.98 2.92
176 177 1.442526 CGATGTGGCTGGCTTCATCC 61.443 60.000 22.52 12.41 34.89 3.51
177 178 0.106819 GATGTGGCTGGCTTCATCCT 60.107 55.000 20.04 1.85 33.01 3.24
178 179 1.141657 GATGTGGCTGGCTTCATCCTA 59.858 52.381 20.04 0.00 33.01 2.94
179 180 0.253044 TGTGGCTGGCTTCATCCTAC 59.747 55.000 2.00 0.00 0.00 3.18
180 181 0.464554 GTGGCTGGCTTCATCCTACC 60.465 60.000 2.00 0.00 0.00 3.18
181 182 0.621571 TGGCTGGCTTCATCCTACCT 60.622 55.000 2.00 0.00 0.00 3.08
182 183 1.343985 TGGCTGGCTTCATCCTACCTA 60.344 52.381 2.00 0.00 0.00 3.08
183 184 1.981495 GGCTGGCTTCATCCTACCTAT 59.019 52.381 0.00 0.00 0.00 2.57
184 185 2.289945 GGCTGGCTTCATCCTACCTATG 60.290 54.545 0.00 0.00 0.00 2.23
185 186 2.634940 GCTGGCTTCATCCTACCTATGA 59.365 50.000 0.00 0.00 0.00 2.15
186 187 3.556004 GCTGGCTTCATCCTACCTATGAC 60.556 52.174 0.00 0.00 33.18 3.06
187 188 3.900601 CTGGCTTCATCCTACCTATGACT 59.099 47.826 0.00 0.00 33.18 3.41
188 189 4.298626 TGGCTTCATCCTACCTATGACTT 58.701 43.478 0.00 0.00 33.18 3.01
189 190 4.345257 TGGCTTCATCCTACCTATGACTTC 59.655 45.833 0.00 0.00 33.18 3.01
190 191 4.591072 GGCTTCATCCTACCTATGACTTCT 59.409 45.833 0.00 0.00 33.18 2.85
191 192 5.071115 GGCTTCATCCTACCTATGACTTCTT 59.929 44.000 0.00 0.00 33.18 2.52
192 193 5.988561 GCTTCATCCTACCTATGACTTCTTG 59.011 44.000 0.00 0.00 33.18 3.02
193 194 6.183360 GCTTCATCCTACCTATGACTTCTTGA 60.183 42.308 0.00 0.00 33.18 3.02
194 195 6.968263 TCATCCTACCTATGACTTCTTGAG 57.032 41.667 0.00 0.00 0.00 3.02
195 196 5.835819 TCATCCTACCTATGACTTCTTGAGG 59.164 44.000 0.00 0.00 0.00 3.86
196 197 4.547671 TCCTACCTATGACTTCTTGAGGG 58.452 47.826 0.00 0.00 0.00 4.30
197 198 4.016479 TCCTACCTATGACTTCTTGAGGGT 60.016 45.833 0.00 0.00 0.00 4.34
198 199 4.717280 CCTACCTATGACTTCTTGAGGGTT 59.283 45.833 0.00 0.00 0.00 4.11
199 200 5.189934 CCTACCTATGACTTCTTGAGGGTTT 59.810 44.000 0.00 0.00 0.00 3.27
200 201 6.383147 CCTACCTATGACTTCTTGAGGGTTTA 59.617 42.308 0.00 0.00 0.00 2.01
201 202 6.893020 ACCTATGACTTCTTGAGGGTTTAT 57.107 37.500 0.00 0.00 0.00 1.40
202 203 7.989947 ACCTATGACTTCTTGAGGGTTTATA 57.010 36.000 0.00 0.00 0.00 0.98
203 204 8.568617 ACCTATGACTTCTTGAGGGTTTATAT 57.431 34.615 0.00 0.00 0.00 0.86
204 205 9.004231 ACCTATGACTTCTTGAGGGTTTATATT 57.996 33.333 0.00 0.00 0.00 1.28
232 233 8.921353 AATCCCATCATGAATAAGAGAAGAAG 57.079 34.615 0.00 0.00 0.00 2.85
233 234 6.835174 TCCCATCATGAATAAGAGAAGAAGG 58.165 40.000 0.00 0.00 0.00 3.46
234 235 6.616959 TCCCATCATGAATAAGAGAAGAAGGA 59.383 38.462 0.00 0.00 0.00 3.36
235 236 7.294245 TCCCATCATGAATAAGAGAAGAAGGAT 59.706 37.037 0.00 0.00 0.00 3.24
236 237 7.943447 CCCATCATGAATAAGAGAAGAAGGATT 59.057 37.037 0.00 0.00 0.00 3.01
255 256 8.753497 AAGGATTCACTTTTACTTTTCTGTCT 57.247 30.769 0.00 0.00 0.00 3.41
256 257 8.753497 AGGATTCACTTTTACTTTTCTGTCTT 57.247 30.769 0.00 0.00 0.00 3.01
257 258 9.190317 AGGATTCACTTTTACTTTTCTGTCTTT 57.810 29.630 0.00 0.00 0.00 2.52
258 259 9.452065 GGATTCACTTTTACTTTTCTGTCTTTC 57.548 33.333 0.00 0.00 0.00 2.62
259 260 9.159470 GATTCACTTTTACTTTTCTGTCTTTCG 57.841 33.333 0.00 0.00 0.00 3.46
260 261 7.605410 TCACTTTTACTTTTCTGTCTTTCGT 57.395 32.000 0.00 0.00 0.00 3.85
261 262 7.681903 TCACTTTTACTTTTCTGTCTTTCGTC 58.318 34.615 0.00 0.00 0.00 4.20
262 263 7.548075 TCACTTTTACTTTTCTGTCTTTCGTCT 59.452 33.333 0.00 0.00 0.00 4.18
263 264 7.846592 CACTTTTACTTTTCTGTCTTTCGTCTC 59.153 37.037 0.00 0.00 0.00 3.36
264 265 7.764901 ACTTTTACTTTTCTGTCTTTCGTCTCT 59.235 33.333 0.00 0.00 0.00 3.10
265 266 7.695869 TTTACTTTTCTGTCTTTCGTCTCTC 57.304 36.000 0.00 0.00 0.00 3.20
266 267 5.523438 ACTTTTCTGTCTTTCGTCTCTCT 57.477 39.130 0.00 0.00 0.00 3.10
267 268 5.525199 ACTTTTCTGTCTTTCGTCTCTCTC 58.475 41.667 0.00 0.00 0.00 3.20
268 269 3.815337 TTCTGTCTTTCGTCTCTCTCG 57.185 47.619 0.00 0.00 0.00 4.04
269 270 2.768698 TCTGTCTTTCGTCTCTCTCGT 58.231 47.619 0.00 0.00 0.00 4.18
270 271 3.139850 TCTGTCTTTCGTCTCTCTCGTT 58.860 45.455 0.00 0.00 0.00 3.85
271 272 3.564644 TCTGTCTTTCGTCTCTCTCGTTT 59.435 43.478 0.00 0.00 0.00 3.60
272 273 4.036498 TCTGTCTTTCGTCTCTCTCGTTTT 59.964 41.667 0.00 0.00 0.00 2.43
273 274 5.237996 TCTGTCTTTCGTCTCTCTCGTTTTA 59.762 40.000 0.00 0.00 0.00 1.52
274 275 5.210715 TGTCTTTCGTCTCTCTCGTTTTAC 58.789 41.667 0.00 0.00 0.00 2.01
275 276 5.210715 GTCTTTCGTCTCTCTCGTTTTACA 58.789 41.667 0.00 0.00 0.00 2.41
276 277 5.857517 GTCTTTCGTCTCTCTCGTTTTACAT 59.142 40.000 0.00 0.00 0.00 2.29
277 278 6.032670 GTCTTTCGTCTCTCTCGTTTTACATC 59.967 42.308 0.00 0.00 0.00 3.06
278 279 5.366829 TTCGTCTCTCTCGTTTTACATCA 57.633 39.130 0.00 0.00 0.00 3.07
279 280 5.366829 TCGTCTCTCTCGTTTTACATCAA 57.633 39.130 0.00 0.00 0.00 2.57
280 281 5.152097 TCGTCTCTCTCGTTTTACATCAAC 58.848 41.667 0.00 0.00 0.00 3.18
281 282 4.915667 CGTCTCTCTCGTTTTACATCAACA 59.084 41.667 0.00 0.00 0.00 3.33
282 283 5.401376 CGTCTCTCTCGTTTTACATCAACAA 59.599 40.000 0.00 0.00 0.00 2.83
283 284 6.582264 GTCTCTCTCGTTTTACATCAACAAC 58.418 40.000 0.00 0.00 0.00 3.32
284 285 6.421202 GTCTCTCTCGTTTTACATCAACAACT 59.579 38.462 0.00 0.00 0.00 3.16
285 286 6.984474 TCTCTCTCGTTTTACATCAACAACTT 59.016 34.615 0.00 0.00 0.00 2.66
286 287 6.943981 TCTCTCGTTTTACATCAACAACTTG 58.056 36.000 0.00 0.00 0.00 3.16
287 288 6.018262 TCTCTCGTTTTACATCAACAACTTGG 60.018 38.462 0.00 0.00 0.00 3.61
288 289 5.587043 TCTCGTTTTACATCAACAACTTGGT 59.413 36.000 0.00 0.00 0.00 3.67
289 290 5.574082 TCGTTTTACATCAACAACTTGGTG 58.426 37.500 0.00 0.00 43.32 4.17
309 310 2.093394 TGTTGAGGAAACAAGTCCGTGA 60.093 45.455 0.00 0.00 45.85 4.35
318 319 5.469084 GGAAACAAGTCCGTGAGAAAATACT 59.531 40.000 0.00 0.00 0.00 2.12
345 348 0.971386 TCACTCCTTGGTAACCCGTC 59.029 55.000 0.00 0.00 0.00 4.79
346 349 0.974383 CACTCCTTGGTAACCCGTCT 59.026 55.000 0.00 0.00 0.00 4.18
363 366 2.602456 CGTCTCCGTGGACATATCTTCG 60.602 54.545 5.98 0.00 36.12 3.79
385 388 3.211045 GTTCAACTACCCAGCTCAACAA 58.789 45.455 0.00 0.00 0.00 2.83
469 474 0.618981 CTTACCAACCCACTCCCCTC 59.381 60.000 0.00 0.00 0.00 4.30
470 475 0.843343 TTACCAACCCACTCCCCTCC 60.843 60.000 0.00 0.00 0.00 4.30
471 476 1.757508 TACCAACCCACTCCCCTCCT 61.758 60.000 0.00 0.00 0.00 3.69
472 477 1.852626 CCAACCCACTCCCCTCCTT 60.853 63.158 0.00 0.00 0.00 3.36
473 478 1.685820 CAACCCACTCCCCTCCTTC 59.314 63.158 0.00 0.00 0.00 3.46
474 479 1.133809 CAACCCACTCCCCTCCTTCA 61.134 60.000 0.00 0.00 0.00 3.02
475 480 0.402861 AACCCACTCCCCTCCTTCAA 60.403 55.000 0.00 0.00 0.00 2.69
476 481 0.402861 ACCCACTCCCCTCCTTCAAA 60.403 55.000 0.00 0.00 0.00 2.69
477 482 0.777446 CCCACTCCCCTCCTTCAAAA 59.223 55.000 0.00 0.00 0.00 2.44
478 483 1.146982 CCCACTCCCCTCCTTCAAAAA 59.853 52.381 0.00 0.00 0.00 1.94
507 512 2.112190 CACTCCCCTACCCTTCTTCTC 58.888 57.143 0.00 0.00 0.00 2.87
508 513 1.008571 ACTCCCCTACCCTTCTTCTCC 59.991 57.143 0.00 0.00 0.00 3.71
974 999 1.953559 TGCTGATAATTGGAGTCGCC 58.046 50.000 0.00 0.00 37.10 5.54
996 1038 4.919754 CCACTGCTTATTTGTCTTTGCTTC 59.080 41.667 0.00 0.00 0.00 3.86
997 1039 5.278660 CCACTGCTTATTTGTCTTTGCTTCT 60.279 40.000 0.00 0.00 0.00 2.85
1036 1078 1.064832 AGCTCTTGGAGAAATGGGAGC 60.065 52.381 0.00 0.00 44.21 4.70
1056 1098 1.741706 CAAGATGACGATGCCAAGCTT 59.258 47.619 0.00 0.00 0.00 3.74
1137 1233 2.271800 GGCTGGTGTTGAAGAGTATCG 58.728 52.381 0.00 0.00 42.67 2.92
1151 1247 6.312918 TGAAGAGTATCGTGTTTTTCCATAGC 59.687 38.462 0.00 0.00 42.67 2.97
1167 1263 3.539604 CATAGCTGGAGAAGTTTCAGGG 58.460 50.000 0.00 0.00 0.00 4.45
1174 1270 4.398319 TGGAGAAGTTTCAGGGAATCAAC 58.602 43.478 0.00 0.00 0.00 3.18
1183 1279 2.293122 TCAGGGAATCAACGCAACAAAG 59.707 45.455 0.00 0.00 0.00 2.77
1186 1282 3.383185 AGGGAATCAACGCAACAAAGAAA 59.617 39.130 0.00 0.00 0.00 2.52
1187 1283 3.489416 GGGAATCAACGCAACAAAGAAAC 59.511 43.478 0.00 0.00 0.00 2.78
1188 1284 4.359706 GGAATCAACGCAACAAAGAAACT 58.640 39.130 0.00 0.00 0.00 2.66
1189 1285 4.207019 GGAATCAACGCAACAAAGAAACTG 59.793 41.667 0.00 0.00 0.00 3.16
1190 1286 4.630894 ATCAACGCAACAAAGAAACTGA 57.369 36.364 0.00 0.00 0.00 3.41
1191 1287 4.630894 TCAACGCAACAAAGAAACTGAT 57.369 36.364 0.00 0.00 0.00 2.90
1192 1288 4.992688 TCAACGCAACAAAGAAACTGATT 58.007 34.783 0.00 0.00 0.00 2.57
1193 1289 4.797868 TCAACGCAACAAAGAAACTGATTG 59.202 37.500 0.00 0.00 0.00 2.67
1194 1290 4.630894 ACGCAACAAAGAAACTGATTGA 57.369 36.364 0.00 0.00 0.00 2.57
1195 1291 4.992688 ACGCAACAAAGAAACTGATTGAA 58.007 34.783 0.00 0.00 0.00 2.69
1196 1292 4.798387 ACGCAACAAAGAAACTGATTGAAC 59.202 37.500 0.00 0.00 0.00 3.18
1197 1293 5.036737 CGCAACAAAGAAACTGATTGAACT 58.963 37.500 0.00 0.00 0.00 3.01
1198 1294 5.516339 CGCAACAAAGAAACTGATTGAACTT 59.484 36.000 0.00 0.00 0.00 2.66
1199 1295 6.034898 CGCAACAAAGAAACTGATTGAACTTT 59.965 34.615 0.00 0.00 0.00 2.66
1200 1296 7.219917 CGCAACAAAGAAACTGATTGAACTTTA 59.780 33.333 0.00 0.00 0.00 1.85
1201 1297 8.321005 GCAACAAAGAAACTGATTGAACTTTAC 58.679 33.333 0.00 0.00 0.00 2.01
1202 1298 8.807581 CAACAAAGAAACTGATTGAACTTTACC 58.192 33.333 0.00 0.00 0.00 2.85
1203 1299 7.489160 ACAAAGAAACTGATTGAACTTTACCC 58.511 34.615 0.00 0.00 0.00 3.69
1204 1300 7.123547 ACAAAGAAACTGATTGAACTTTACCCA 59.876 33.333 0.00 0.00 0.00 4.51
1205 1301 6.884280 AGAAACTGATTGAACTTTACCCAG 57.116 37.500 0.00 0.00 0.00 4.45
1206 1302 6.365520 AGAAACTGATTGAACTTTACCCAGT 58.634 36.000 0.00 0.00 35.22 4.00
1207 1303 6.263168 AGAAACTGATTGAACTTTACCCAGTG 59.737 38.462 0.00 0.00 34.16 3.66
1208 1304 5.048846 ACTGATTGAACTTTACCCAGTGT 57.951 39.130 0.00 0.00 32.85 3.55
1209 1305 6.182507 ACTGATTGAACTTTACCCAGTGTA 57.817 37.500 0.00 0.00 32.85 2.90
1210 1306 5.995897 ACTGATTGAACTTTACCCAGTGTAC 59.004 40.000 0.00 0.00 32.85 2.90
1211 1307 5.931294 TGATTGAACTTTACCCAGTGTACA 58.069 37.500 0.00 0.00 0.00 2.90
1212 1308 5.995282 TGATTGAACTTTACCCAGTGTACAG 59.005 40.000 0.00 0.00 34.13 2.74
1213 1309 5.362105 TTGAACTTTACCCAGTGTACAGT 57.638 39.130 0.00 0.00 41.19 3.55
1214 1310 6.482898 TTGAACTTTACCCAGTGTACAGTA 57.517 37.500 2.08 0.00 39.07 2.74
1215 1311 6.675413 TGAACTTTACCCAGTGTACAGTAT 57.325 37.500 2.08 0.00 39.07 2.12
1216 1312 7.779754 TGAACTTTACCCAGTGTACAGTATA 57.220 36.000 2.08 0.00 39.07 1.47
1217 1313 8.370266 TGAACTTTACCCAGTGTACAGTATAT 57.630 34.615 2.08 0.00 39.07 0.86
1218 1314 9.478238 TGAACTTTACCCAGTGTACAGTATATA 57.522 33.333 2.08 0.00 39.07 0.86
1244 1340 2.426738 CGCTAATCCAAAGGAAATGCCA 59.573 45.455 0.00 0.00 40.02 4.92
1245 1341 3.119173 CGCTAATCCAAAGGAAATGCCAA 60.119 43.478 0.00 0.00 40.02 4.52
1246 1342 4.620332 CGCTAATCCAAAGGAAATGCCAAA 60.620 41.667 0.00 0.00 40.02 3.28
1247 1343 5.430886 GCTAATCCAAAGGAAATGCCAAAT 58.569 37.500 0.00 0.00 40.02 2.32
1248 1344 5.295045 GCTAATCCAAAGGAAATGCCAAATG 59.705 40.000 0.00 0.00 40.02 2.32
1249 1345 4.914177 ATCCAAAGGAAATGCCAAATGT 57.086 36.364 0.00 0.00 40.02 2.71
1250 1346 4.270245 TCCAAAGGAAATGCCAAATGTC 57.730 40.909 0.00 0.00 40.02 3.06
1829 1978 4.787280 CCGCCTCCTCCTCCCAGT 62.787 72.222 0.00 0.00 0.00 4.00
2328 2496 2.963782 GGTAGTTCTGTGGGACGGATAT 59.036 50.000 0.00 0.00 32.78 1.63
2379 2551 4.525487 ACTCCAAATGTCATGTTCAGCAAT 59.475 37.500 0.00 0.00 0.00 3.56
2380 2552 5.711506 ACTCCAAATGTCATGTTCAGCAATA 59.288 36.000 0.00 0.00 0.00 1.90
2381 2553 6.127814 ACTCCAAATGTCATGTTCAGCAATAG 60.128 38.462 0.00 0.00 0.00 1.73
2382 2554 4.802039 CCAAATGTCATGTTCAGCAATAGC 59.198 41.667 0.00 0.00 42.56 2.97
2384 2556 5.847111 AATGTCATGTTCAGCAATAGCAT 57.153 34.783 0.00 0.00 45.49 3.79
2385 2557 5.847111 ATGTCATGTTCAGCAATAGCATT 57.153 34.783 0.00 0.00 45.49 3.56
2386 2558 6.947644 ATGTCATGTTCAGCAATAGCATTA 57.052 33.333 0.00 0.00 45.49 1.90
2387 2559 6.122850 TGTCATGTTCAGCAATAGCATTAC 57.877 37.500 0.00 0.00 45.49 1.89
2390 2562 6.635641 GTCATGTTCAGCAATAGCATTACATG 59.364 38.462 15.94 15.94 45.60 3.21
2391 2563 5.503662 TGTTCAGCAATAGCATTACATGG 57.496 39.130 0.00 0.00 45.49 3.66
2392 2564 4.949238 TGTTCAGCAATAGCATTACATGGT 59.051 37.500 0.00 0.00 45.49 3.55
2393 2565 5.163632 TGTTCAGCAATAGCATTACATGGTG 60.164 40.000 0.00 0.00 45.49 4.17
2394 2566 3.316029 TCAGCAATAGCATTACATGGTGC 59.684 43.478 10.81 10.81 45.49 5.01
2403 2575 4.342772 GCATTACATGGTGCTAAAACTCG 58.657 43.478 11.33 0.00 38.30 4.18
2423 2607 2.325583 TGTCCTGCGACAGAAGTTTT 57.674 45.000 8.20 0.00 44.20 2.43
2424 2608 2.639065 TGTCCTGCGACAGAAGTTTTT 58.361 42.857 8.20 0.00 44.20 1.94
2464 2648 6.614160 TGTTGTGATATTCAGCAATTGTCAG 58.386 36.000 7.40 0.00 0.00 3.51
2465 2649 6.207221 TGTTGTGATATTCAGCAATTGTCAGT 59.793 34.615 7.40 0.00 0.00 3.41
2466 2650 6.822667 TGTGATATTCAGCAATTGTCAGTT 57.177 33.333 7.40 0.00 0.00 3.16
2469 2653 6.744537 GTGATATTCAGCAATTGTCAGTTGTC 59.255 38.462 7.40 2.99 0.00 3.18
2470 2654 6.430616 TGATATTCAGCAATTGTCAGTTGTCA 59.569 34.615 7.40 2.66 0.00 3.58
2471 2655 3.969117 TCAGCAATTGTCAGTTGTCAC 57.031 42.857 7.40 0.00 0.00 3.67
2472 2656 3.277715 TCAGCAATTGTCAGTTGTCACA 58.722 40.909 7.40 0.00 0.00 3.58
2473 2657 3.693578 TCAGCAATTGTCAGTTGTCACAA 59.306 39.130 7.40 0.00 36.94 3.33
2474 2658 4.039703 CAGCAATTGTCAGTTGTCACAAG 58.960 43.478 7.40 0.00 35.99 3.16
2475 2659 3.696051 AGCAATTGTCAGTTGTCACAAGT 59.304 39.130 7.40 0.00 35.99 3.16
2476 2660 3.792956 GCAATTGTCAGTTGTCACAAGTG 59.207 43.478 18.05 18.05 46.41 3.16
2477 2661 4.438608 GCAATTGTCAGTTGTCACAAGTGA 60.439 41.667 21.99 21.99 46.54 3.41
2478 2662 5.734220 GCAATTGTCAGTTGTCACAAGTGAT 60.734 40.000 27.08 11.91 46.54 3.06
2495 2679 6.716628 ACAAGTGATATGAATGTGAGGTTTGT 59.283 34.615 0.00 0.00 0.00 2.83
2498 2682 6.151648 AGTGATATGAATGTGAGGTTTGTTGG 59.848 38.462 0.00 0.00 0.00 3.77
2587 2771 1.484240 CAGGTGGGATTCTCAGAGTCC 59.516 57.143 7.73 7.73 37.66 3.85
2601 2785 1.078426 AGTCCCCGTGCTGTATTGC 60.078 57.895 0.00 0.00 0.00 3.56
2777 2961 3.701040 GGTGATGCCCTTGTGACATATTT 59.299 43.478 0.00 0.00 0.00 1.40
2977 3163 9.997482 TTATGGCTTTTAGTGATAAATTCGTTC 57.003 29.630 0.00 0.00 0.00 3.95
3075 3267 7.391148 TGCCTTTCTATTGATACTTTGTTCC 57.609 36.000 0.00 0.00 0.00 3.62
3198 3409 7.956328 ATAGGTTACATACAGACTGAAGTGA 57.044 36.000 10.08 0.00 0.00 3.41
3199 3410 6.665992 AGGTTACATACAGACTGAAGTGAA 57.334 37.500 10.08 0.00 0.00 3.18
3200 3411 7.246171 AGGTTACATACAGACTGAAGTGAAT 57.754 36.000 10.08 0.00 0.00 2.57
3201 3412 7.099764 AGGTTACATACAGACTGAAGTGAATG 58.900 38.462 10.08 5.51 0.00 2.67
3202 3413 7.039011 AGGTTACATACAGACTGAAGTGAATGA 60.039 37.037 10.08 0.00 0.00 2.57
3203 3414 7.602644 GGTTACATACAGACTGAAGTGAATGAA 59.397 37.037 10.08 0.00 0.00 2.57
3204 3415 8.436200 GTTACATACAGACTGAAGTGAATGAAC 58.564 37.037 10.08 2.41 0.00 3.18
3208 3419 6.124088 ACAGACTGAAGTGAATGAACAAAC 57.876 37.500 10.08 0.00 0.00 2.93
3218 3429 9.301153 GAAGTGAATGAACAAACACACTAAAAT 57.699 29.630 0.00 0.00 37.57 1.82
3285 3496 2.544844 AGTCGGAATGGAGGGAGTAA 57.455 50.000 0.00 0.00 0.00 2.24
3366 3577 0.558712 TGTAGGTTTTTGCCACCCCT 59.441 50.000 0.00 0.00 34.44 4.79
3447 3658 5.256474 CCTGGATATTTAGGTAGGCATTGG 58.744 45.833 0.00 0.00 0.00 3.16
3477 3688 1.779092 CCCATTCTCACATCCCCAGAT 59.221 52.381 0.00 0.00 0.00 2.90
3541 3753 6.068010 TGGGACAAACAGTATGAATGAGTTT 58.932 36.000 0.00 0.00 34.82 2.66
3678 3890 7.758528 GCTAGACTGAATGCAAAAGAAATGATT 59.241 33.333 0.00 0.00 0.00 2.57
3705 3917 3.502211 CCGGTCTTGCTACTCATTTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
3760 3972 8.747666 GCGTTTCTTGATGTATTGTTTTGTTTA 58.252 29.630 0.00 0.00 0.00 2.01
3802 4014 7.276438 GGTTCCAAGCACAAAAATCTGATATTC 59.724 37.037 0.00 0.00 0.00 1.75
3807 4019 9.582431 CAAGCACAAAAATCTGATATTCTCAAT 57.418 29.630 0.00 0.00 32.14 2.57
3819 4031 8.868103 TCTGATATTCTCAATCTGTAGCTTGAT 58.132 33.333 0.00 0.00 30.93 2.57
3868 4080 8.565416 GGTTTGCTTGTAGTTTGACTAGTTTAT 58.435 33.333 0.00 0.00 30.12 1.40
3897 4109 6.189859 TGTATGGCAGAAATTGGAAGATCTT 58.810 36.000 7.95 7.95 0.00 2.40
4070 4282 6.056884 TGTTGTAAGGATTCCGTGTTTACTT 58.943 36.000 11.64 0.00 0.00 2.24
4271 4489 4.883585 TGAATCTTCACACTGTTGCTTCTT 59.116 37.500 0.00 0.00 31.01 2.52
4327 4545 4.952460 TGTTGTTCAGTAACTACCAGTCC 58.048 43.478 0.00 0.00 39.62 3.85
4330 4548 0.806868 TCAGTAACTACCAGTCCGCG 59.193 55.000 0.00 0.00 0.00 6.46
4528 4755 6.239217 AGGCAGAAATGATACACTCATACA 57.761 37.500 0.00 0.00 44.03 2.29
4534 4761 9.809096 CAGAAATGATACACTCATACACTTACT 57.191 33.333 0.00 0.00 44.03 2.24
4539 4766 9.854668 ATGATACACTCATACACTTACTAGTCT 57.145 33.333 0.00 0.00 42.96 3.24
4540 4767 9.682465 TGATACACTCATACACTTACTAGTCTT 57.318 33.333 0.00 0.00 30.26 3.01
4542 4769 7.997773 ACACTCATACACTTACTAGTCTTCA 57.002 36.000 0.00 0.00 30.26 3.02
4543 4770 8.582657 ACACTCATACACTTACTAGTCTTCAT 57.417 34.615 0.00 0.00 30.26 2.57
4544 4771 9.026121 ACACTCATACACTTACTAGTCTTCATT 57.974 33.333 0.00 0.00 30.26 2.57
4545 4772 9.509855 CACTCATACACTTACTAGTCTTCATTC 57.490 37.037 0.00 0.00 30.26 2.67
4546 4773 8.688151 ACTCATACACTTACTAGTCTTCATTCC 58.312 37.037 0.00 0.00 30.26 3.01
4547 4774 8.824756 TCATACACTTACTAGTCTTCATTCCT 57.175 34.615 0.00 0.00 30.26 3.36
4548 4775 9.256228 TCATACACTTACTAGTCTTCATTCCTT 57.744 33.333 0.00 0.00 30.26 3.36
4549 4776 9.522804 CATACACTTACTAGTCTTCATTCCTTC 57.477 37.037 0.00 0.00 30.26 3.46
4550 4777 7.784470 ACACTTACTAGTCTTCATTCCTTCT 57.216 36.000 0.00 0.00 30.26 2.85
4551 4778 8.880991 ACACTTACTAGTCTTCATTCCTTCTA 57.119 34.615 0.00 0.00 30.26 2.10
4552 4779 9.482175 ACACTTACTAGTCTTCATTCCTTCTAT 57.518 33.333 0.00 0.00 30.26 1.98
4553 4780 9.743057 CACTTACTAGTCTTCATTCCTTCTATG 57.257 37.037 0.00 0.00 30.26 2.23
4554 4781 9.702253 ACTTACTAGTCTTCATTCCTTCTATGA 57.298 33.333 0.00 0.00 0.00 2.15
4557 4784 8.367660 ACTAGTCTTCATTCCTTCTATGAACA 57.632 34.615 0.00 0.00 37.15 3.18
4558 4785 8.474025 ACTAGTCTTCATTCCTTCTATGAACAG 58.526 37.037 0.00 0.00 37.15 3.16
4559 4786 6.112058 AGTCTTCATTCCTTCTATGAACAGC 58.888 40.000 0.00 0.00 37.15 4.40
4560 4787 5.877012 GTCTTCATTCCTTCTATGAACAGCA 59.123 40.000 0.00 0.00 37.15 4.41
4561 4788 5.877012 TCTTCATTCCTTCTATGAACAGCAC 59.123 40.000 0.00 0.00 37.15 4.40
4562 4789 5.164620 TCATTCCTTCTATGAACAGCACA 57.835 39.130 0.00 0.00 0.00 4.57
4563 4790 5.559770 TCATTCCTTCTATGAACAGCACAA 58.440 37.500 0.00 0.00 0.00 3.33
4564 4791 5.412594 TCATTCCTTCTATGAACAGCACAAC 59.587 40.000 0.00 0.00 0.00 3.32
4610 4837 8.248945 ACGAACGATTTTCCTCTCTTTTATAGA 58.751 33.333 0.14 0.00 0.00 1.98
4657 4884 5.026121 TGGATGTAGGATTCAGAAGTGAGT 58.974 41.667 0.00 0.00 32.98 3.41
4660 4887 5.139435 TGTAGGATTCAGAAGTGAGTGTG 57.861 43.478 0.00 0.00 32.98 3.82
4663 4890 3.007398 AGGATTCAGAAGTGAGTGTGGAC 59.993 47.826 0.00 0.00 32.98 4.02
4805 5032 7.283625 TGTTGTTGTGTAGGCTTCATATTTT 57.716 32.000 0.00 0.00 0.00 1.82
4934 5162 2.125512 GGAGTGCGGTGTAGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
5117 5346 5.532406 GGTGATGTGTATGAGGTATTGCAAT 59.468 40.000 17.56 17.56 0.00 3.56
5133 5362 7.165812 GGTATTGCAATCGTACAATGAATGAAC 59.834 37.037 16.86 2.25 37.11 3.18
5134 5363 4.980590 TGCAATCGTACAATGAATGAACC 58.019 39.130 0.00 0.00 0.00 3.62
5163 5392 5.635120 AGTCTTTTGGTTGAATCTTAGCCT 58.365 37.500 0.00 0.00 0.00 4.58
5235 5467 2.237392 AGACAATGCACCTAAGGTCTCC 59.763 50.000 0.00 0.00 31.02 3.71
5260 5492 2.317900 TCCCTCCCCTCTCTCAATACAA 59.682 50.000 0.00 0.00 0.00 2.41
5262 5494 3.523564 CCCTCCCCTCTCTCAATACAAAA 59.476 47.826 0.00 0.00 0.00 2.44
5272 5504 7.361201 CCTCTCTCAATACAAAATTTTCTCGCA 60.361 37.037 0.00 0.00 0.00 5.10
5491 7784 4.772624 TCAGACACCTAGCATAGACAGTTT 59.227 41.667 0.00 0.00 42.77 2.66
5492 7785 5.949952 TCAGACACCTAGCATAGACAGTTTA 59.050 40.000 0.00 0.00 42.77 2.01
5636 8863 4.099380 TGCTGTATGACATGCATGTTTG 57.901 40.909 31.82 18.28 41.95 2.93
5647 8874 2.867456 GCATGTTTGAGTGCAAATGC 57.133 45.000 0.00 0.00 45.01 3.56
5733 9169 3.496884 GCAACTGAGGTTTCATTACGACA 59.503 43.478 0.00 0.00 32.73 4.35
5836 9277 6.981559 GTCTCAAACTCTGTTCTAACTTCACT 59.018 38.462 0.00 0.00 0.00 3.41
5984 9431 3.702548 TGGTGTATGCCTATCGTGTAAGT 59.297 43.478 0.00 0.00 0.00 2.24
6266 9713 6.716628 TCTTGTGATCAGCAAAACTAAAGGAT 59.283 34.615 0.00 0.00 0.00 3.24
6440 9908 3.192212 CCAGGAAAACAGCTTCTGATTCC 59.808 47.826 18.93 18.93 43.75 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.875713 CAATCCCCTTCCGCCCCG 62.876 72.222 0.00 0.00 0.00 5.73
19 20 4.522975 CCAATCCCCTTCCGCCCC 62.523 72.222 0.00 0.00 0.00 5.80
20 21 4.522975 CCCAATCCCCTTCCGCCC 62.523 72.222 0.00 0.00 0.00 6.13
21 22 4.522975 CCCCAATCCCCTTCCGCC 62.523 72.222 0.00 0.00 0.00 6.13
22 23 4.522975 CCCCCAATCCCCTTCCGC 62.523 72.222 0.00 0.00 0.00 5.54
23 24 4.522975 GCCCCCAATCCCCTTCCG 62.523 72.222 0.00 0.00 0.00 4.30
24 25 1.699930 TAGCCCCCAATCCCCTTCC 60.700 63.158 0.00 0.00 0.00 3.46
25 26 1.720077 CCTAGCCCCCAATCCCCTTC 61.720 65.000 0.00 0.00 0.00 3.46
26 27 1.701390 CCTAGCCCCCAATCCCCTT 60.701 63.158 0.00 0.00 0.00 3.95
27 28 2.038330 CCTAGCCCCCAATCCCCT 60.038 66.667 0.00 0.00 0.00 4.79
28 29 1.590339 AAACCTAGCCCCCAATCCCC 61.590 60.000 0.00 0.00 0.00 4.81
29 30 0.338467 AAAACCTAGCCCCCAATCCC 59.662 55.000 0.00 0.00 0.00 3.85
30 31 1.006639 TCAAAACCTAGCCCCCAATCC 59.993 52.381 0.00 0.00 0.00 3.01
31 32 2.100197 GTCAAAACCTAGCCCCCAATC 58.900 52.381 0.00 0.00 0.00 2.67
32 33 1.273041 GGTCAAAACCTAGCCCCCAAT 60.273 52.381 0.00 0.00 42.80 3.16
33 34 0.113580 GGTCAAAACCTAGCCCCCAA 59.886 55.000 0.00 0.00 42.80 4.12
34 35 1.771646 GGTCAAAACCTAGCCCCCA 59.228 57.895 0.00 0.00 42.80 4.96
35 36 1.378119 CGGTCAAAACCTAGCCCCC 60.378 63.158 0.00 0.00 44.04 5.40
36 37 2.044555 GCGGTCAAAACCTAGCCCC 61.045 63.158 0.00 0.00 44.04 5.80
37 38 0.608308 AAGCGGTCAAAACCTAGCCC 60.608 55.000 0.00 0.00 44.04 5.19
38 39 0.521735 CAAGCGGTCAAAACCTAGCC 59.478 55.000 0.00 0.00 44.04 3.93
39 40 0.109735 GCAAGCGGTCAAAACCTAGC 60.110 55.000 0.00 0.00 44.04 3.42
40 41 1.464997 GAGCAAGCGGTCAAAACCTAG 59.535 52.381 0.00 0.00 44.04 3.02
41 42 1.202710 TGAGCAAGCGGTCAAAACCTA 60.203 47.619 0.00 0.00 46.32 3.08
42 43 0.465460 TGAGCAAGCGGTCAAAACCT 60.465 50.000 0.00 0.00 46.32 3.50
43 44 2.029743 TGAGCAAGCGGTCAAAACC 58.970 52.632 0.00 0.00 46.32 3.27
49 50 3.003378 GGGTATAAATTGAGCAAGCGGTC 59.997 47.826 0.00 0.00 40.20 4.79
50 51 2.949644 GGGTATAAATTGAGCAAGCGGT 59.050 45.455 0.00 0.00 0.00 5.68
51 52 2.293399 GGGGTATAAATTGAGCAAGCGG 59.707 50.000 0.00 0.00 0.00 5.52
52 53 3.214328 AGGGGTATAAATTGAGCAAGCG 58.786 45.455 0.00 0.00 0.00 4.68
53 54 4.644685 TGAAGGGGTATAAATTGAGCAAGC 59.355 41.667 0.00 0.00 0.00 4.01
54 55 5.220854 CGTGAAGGGGTATAAATTGAGCAAG 60.221 44.000 0.00 0.00 0.00 4.01
55 56 4.638421 CGTGAAGGGGTATAAATTGAGCAA 59.362 41.667 0.00 0.00 0.00 3.91
56 57 4.196193 CGTGAAGGGGTATAAATTGAGCA 58.804 43.478 0.00 0.00 0.00 4.26
57 58 4.035208 CACGTGAAGGGGTATAAATTGAGC 59.965 45.833 10.90 0.00 0.00 4.26
58 59 5.424757 TCACGTGAAGGGGTATAAATTGAG 58.575 41.667 17.62 0.00 0.00 3.02
59 60 5.423704 TCACGTGAAGGGGTATAAATTGA 57.576 39.130 17.62 0.00 0.00 2.57
60 61 6.503589 TTTCACGTGAAGGGGTATAAATTG 57.496 37.500 28.21 0.00 35.21 2.32
61 62 6.943718 TCTTTTCACGTGAAGGGGTATAAATT 59.056 34.615 28.21 0.00 35.21 1.82
62 63 6.373495 GTCTTTTCACGTGAAGGGGTATAAAT 59.627 38.462 28.21 0.00 35.21 1.40
63 64 5.702209 GTCTTTTCACGTGAAGGGGTATAAA 59.298 40.000 28.21 17.01 35.21 1.40
64 65 5.240121 GTCTTTTCACGTGAAGGGGTATAA 58.760 41.667 28.21 17.66 35.21 0.98
65 66 4.322953 GGTCTTTTCACGTGAAGGGGTATA 60.323 45.833 28.21 11.45 35.21 1.47
66 67 3.558533 GGTCTTTTCACGTGAAGGGGTAT 60.559 47.826 28.21 0.00 35.21 2.73
67 68 2.224354 GGTCTTTTCACGTGAAGGGGTA 60.224 50.000 28.21 12.90 35.21 3.69
68 69 1.476291 GGTCTTTTCACGTGAAGGGGT 60.476 52.381 28.21 0.00 35.21 4.95
69 70 1.235724 GGTCTTTTCACGTGAAGGGG 58.764 55.000 28.21 21.20 35.21 4.79
70 71 1.961793 TGGTCTTTTCACGTGAAGGG 58.038 50.000 28.21 23.33 35.21 3.95
71 72 4.364415 TTTTGGTCTTTTCACGTGAAGG 57.636 40.909 28.21 23.64 35.21 3.46
72 73 4.207019 GCATTTTGGTCTTTTCACGTGAAG 59.793 41.667 28.21 19.35 35.21 3.02
73 74 4.109050 GCATTTTGGTCTTTTCACGTGAA 58.891 39.130 26.53 26.53 0.00 3.18
74 75 3.490078 GGCATTTTGGTCTTTTCACGTGA 60.490 43.478 15.76 15.76 0.00 4.35
75 76 2.794350 GGCATTTTGGTCTTTTCACGTG 59.206 45.455 9.94 9.94 0.00 4.49
76 77 2.223947 GGGCATTTTGGTCTTTTCACGT 60.224 45.455 0.00 0.00 0.00 4.49
77 78 2.035832 AGGGCATTTTGGTCTTTTCACG 59.964 45.455 0.00 0.00 0.00 4.35
78 79 3.653344 GAGGGCATTTTGGTCTTTTCAC 58.347 45.455 0.00 0.00 0.00 3.18
79 80 2.295909 CGAGGGCATTTTGGTCTTTTCA 59.704 45.455 0.00 0.00 0.00 2.69
80 81 2.352715 CCGAGGGCATTTTGGTCTTTTC 60.353 50.000 0.00 0.00 0.00 2.29
81 82 1.618343 CCGAGGGCATTTTGGTCTTTT 59.382 47.619 0.00 0.00 0.00 2.27
82 83 1.256812 CCGAGGGCATTTTGGTCTTT 58.743 50.000 0.00 0.00 0.00 2.52
83 84 2.961424 CCGAGGGCATTTTGGTCTT 58.039 52.632 0.00 0.00 0.00 3.01
84 85 4.743018 CCGAGGGCATTTTGGTCT 57.257 55.556 0.00 0.00 0.00 3.85
97 98 3.675619 AATTCCGTTCCCCGCCGAG 62.676 63.158 0.00 0.00 34.38 4.63
98 99 1.897225 TAAATTCCGTTCCCCGCCGA 61.897 55.000 0.00 0.00 34.38 5.54
99 100 1.449956 TAAATTCCGTTCCCCGCCG 60.450 57.895 0.00 0.00 34.38 6.46
100 101 0.677414 TGTAAATTCCGTTCCCCGCC 60.677 55.000 0.00 0.00 34.38 6.13
101 102 1.131693 CTTGTAAATTCCGTTCCCCGC 59.868 52.381 0.00 0.00 34.38 6.13
102 103 1.131693 GCTTGTAAATTCCGTTCCCCG 59.868 52.381 0.00 0.00 0.00 5.73
103 104 1.131693 CGCTTGTAAATTCCGTTCCCC 59.868 52.381 0.00 0.00 0.00 4.81
104 105 2.078392 TCGCTTGTAAATTCCGTTCCC 58.922 47.619 0.00 0.00 0.00 3.97
105 106 3.486875 CCATCGCTTGTAAATTCCGTTCC 60.487 47.826 0.00 0.00 0.00 3.62
106 107 3.680789 CCATCGCTTGTAAATTCCGTTC 58.319 45.455 0.00 0.00 0.00 3.95
107 108 2.159435 GCCATCGCTTGTAAATTCCGTT 60.159 45.455 0.00 0.00 0.00 4.44
108 109 1.400494 GCCATCGCTTGTAAATTCCGT 59.600 47.619 0.00 0.00 0.00 4.69
109 110 1.400142 TGCCATCGCTTGTAAATTCCG 59.600 47.619 0.00 0.00 35.36 4.30
110 111 2.682856 TCTGCCATCGCTTGTAAATTCC 59.317 45.455 0.00 0.00 35.36 3.01
111 112 4.346129 CTTCTGCCATCGCTTGTAAATTC 58.654 43.478 0.00 0.00 35.36 2.17
112 113 3.428045 GCTTCTGCCATCGCTTGTAAATT 60.428 43.478 0.00 0.00 35.36 1.82
113 114 2.098117 GCTTCTGCCATCGCTTGTAAAT 59.902 45.455 0.00 0.00 35.36 1.40
114 115 1.468520 GCTTCTGCCATCGCTTGTAAA 59.531 47.619 0.00 0.00 35.36 2.01
115 116 1.086696 GCTTCTGCCATCGCTTGTAA 58.913 50.000 0.00 0.00 35.36 2.41
116 117 0.036483 TGCTTCTGCCATCGCTTGTA 60.036 50.000 0.00 0.00 38.71 2.41
117 118 1.302752 TGCTTCTGCCATCGCTTGT 60.303 52.632 0.00 0.00 38.71 3.16
118 119 1.136147 GTGCTTCTGCCATCGCTTG 59.864 57.895 0.00 0.00 38.71 4.01
119 120 1.002868 AGTGCTTCTGCCATCGCTT 60.003 52.632 0.00 0.00 38.71 4.68
120 121 1.744368 CAGTGCTTCTGCCATCGCT 60.744 57.895 0.00 0.00 37.36 4.93
121 122 2.789917 CAGTGCTTCTGCCATCGC 59.210 61.111 0.00 0.00 37.36 4.58
129 130 2.936919 TCACCATGAACAGTGCTTCT 57.063 45.000 0.00 0.00 33.90 2.85
130 131 4.510038 AATTCACCATGAACAGTGCTTC 57.490 40.909 0.00 0.00 39.45 3.86
131 132 5.316167 TCTAATTCACCATGAACAGTGCTT 58.684 37.500 0.00 0.00 39.45 3.91
132 133 4.910195 TCTAATTCACCATGAACAGTGCT 58.090 39.130 0.00 0.00 39.45 4.40
133 134 4.095483 CCTCTAATTCACCATGAACAGTGC 59.905 45.833 0.00 0.00 39.45 4.40
134 135 4.095483 GCCTCTAATTCACCATGAACAGTG 59.905 45.833 0.00 0.00 39.45 3.66
135 136 4.265073 GCCTCTAATTCACCATGAACAGT 58.735 43.478 0.00 0.00 39.45 3.55
136 137 3.310774 CGCCTCTAATTCACCATGAACAG 59.689 47.826 0.00 0.00 39.45 3.16
137 138 3.055458 TCGCCTCTAATTCACCATGAACA 60.055 43.478 0.00 0.00 39.45 3.18
138 139 3.531538 TCGCCTCTAATTCACCATGAAC 58.468 45.455 0.00 0.00 39.45 3.18
139 140 3.904800 TCGCCTCTAATTCACCATGAA 57.095 42.857 0.00 0.00 41.09 2.57
140 141 3.134623 ACATCGCCTCTAATTCACCATGA 59.865 43.478 0.00 0.00 0.00 3.07
141 142 3.249320 CACATCGCCTCTAATTCACCATG 59.751 47.826 0.00 0.00 0.00 3.66
142 143 3.470709 CACATCGCCTCTAATTCACCAT 58.529 45.455 0.00 0.00 0.00 3.55
143 144 2.419990 CCACATCGCCTCTAATTCACCA 60.420 50.000 0.00 0.00 0.00 4.17
144 145 2.213499 CCACATCGCCTCTAATTCACC 58.787 52.381 0.00 0.00 0.00 4.02
145 146 1.599542 GCCACATCGCCTCTAATTCAC 59.400 52.381 0.00 0.00 0.00 3.18
146 147 1.486310 AGCCACATCGCCTCTAATTCA 59.514 47.619 0.00 0.00 0.00 2.57
147 148 1.869767 CAGCCACATCGCCTCTAATTC 59.130 52.381 0.00 0.00 0.00 2.17
148 149 1.475751 CCAGCCACATCGCCTCTAATT 60.476 52.381 0.00 0.00 0.00 1.40
149 150 0.107456 CCAGCCACATCGCCTCTAAT 59.893 55.000 0.00 0.00 0.00 1.73
150 151 1.522092 CCAGCCACATCGCCTCTAA 59.478 57.895 0.00 0.00 0.00 2.10
151 152 3.094062 GCCAGCCACATCGCCTCTA 62.094 63.158 0.00 0.00 0.00 2.43
152 153 4.479993 GCCAGCCACATCGCCTCT 62.480 66.667 0.00 0.00 0.00 3.69
153 154 3.984193 AAGCCAGCCACATCGCCTC 62.984 63.158 0.00 0.00 0.00 4.70
154 155 3.984193 GAAGCCAGCCACATCGCCT 62.984 63.158 0.00 0.00 0.00 5.52
155 156 3.512516 GAAGCCAGCCACATCGCC 61.513 66.667 0.00 0.00 0.00 5.54
156 157 2.056481 GATGAAGCCAGCCACATCGC 62.056 60.000 9.66 0.00 31.74 4.58
157 158 2.020131 GATGAAGCCAGCCACATCG 58.980 57.895 9.66 0.00 31.74 3.84
164 165 2.634940 TCATAGGTAGGATGAAGCCAGC 59.365 50.000 0.00 0.00 30.35 4.85
165 166 3.900601 AGTCATAGGTAGGATGAAGCCAG 59.099 47.826 0.00 0.00 35.15 4.85
166 167 3.928754 AGTCATAGGTAGGATGAAGCCA 58.071 45.455 0.00 0.00 35.15 4.75
167 168 4.591072 AGAAGTCATAGGTAGGATGAAGCC 59.409 45.833 0.00 0.00 35.15 4.35
168 169 5.799827 AGAAGTCATAGGTAGGATGAAGC 57.200 43.478 0.00 0.00 35.15 3.86
169 170 7.353414 TCAAGAAGTCATAGGTAGGATGAAG 57.647 40.000 0.00 0.00 35.15 3.02
170 171 6.325028 CCTCAAGAAGTCATAGGTAGGATGAA 59.675 42.308 0.00 0.00 35.15 2.57
171 172 5.835819 CCTCAAGAAGTCATAGGTAGGATGA 59.164 44.000 0.00 0.00 0.00 2.92
172 173 5.011533 CCCTCAAGAAGTCATAGGTAGGATG 59.988 48.000 0.00 0.00 0.00 3.51
173 174 5.151454 CCCTCAAGAAGTCATAGGTAGGAT 58.849 45.833 0.00 0.00 0.00 3.24
174 175 4.016479 ACCCTCAAGAAGTCATAGGTAGGA 60.016 45.833 0.00 0.00 0.00 2.94
175 176 4.290942 ACCCTCAAGAAGTCATAGGTAGG 58.709 47.826 0.00 0.00 0.00 3.18
176 177 5.941555 AACCCTCAAGAAGTCATAGGTAG 57.058 43.478 0.00 0.00 0.00 3.18
177 178 7.989947 ATAAACCCTCAAGAAGTCATAGGTA 57.010 36.000 0.00 0.00 0.00 3.08
178 179 6.893020 ATAAACCCTCAAGAAGTCATAGGT 57.107 37.500 0.00 0.00 0.00 3.08
207 208 7.943447 CCTTCTTCTCTTATTCATGATGGGATT 59.057 37.037 0.00 0.00 0.00 3.01
208 209 7.294245 TCCTTCTTCTCTTATTCATGATGGGAT 59.706 37.037 0.00 0.00 0.00 3.85
209 210 6.616959 TCCTTCTTCTCTTATTCATGATGGGA 59.383 38.462 0.00 0.00 0.00 4.37
210 211 6.835174 TCCTTCTTCTCTTATTCATGATGGG 58.165 40.000 0.00 0.00 0.00 4.00
211 212 8.921353 AATCCTTCTTCTCTTATTCATGATGG 57.079 34.615 0.00 0.00 0.00 3.51
212 213 9.557061 TGAATCCTTCTTCTCTTATTCATGATG 57.443 33.333 0.00 0.00 30.59 3.07
213 214 9.558396 GTGAATCCTTCTTCTCTTATTCATGAT 57.442 33.333 0.00 0.00 36.19 2.45
214 215 8.766476 AGTGAATCCTTCTTCTCTTATTCATGA 58.234 33.333 0.00 0.00 36.19 3.07
215 216 8.961294 AGTGAATCCTTCTTCTCTTATTCATG 57.039 34.615 0.00 0.00 36.19 3.07
216 217 9.972106 AAAGTGAATCCTTCTTCTCTTATTCAT 57.028 29.630 0.00 0.00 37.76 2.57
217 218 9.799106 AAAAGTGAATCCTTCTTCTCTTATTCA 57.201 29.630 0.00 0.00 37.76 2.57
222 223 9.634021 AAAGTAAAAGTGAATCCTTCTTCTCTT 57.366 29.630 0.00 0.00 39.42 2.85
223 224 9.634021 AAAAGTAAAAGTGAATCCTTCTTCTCT 57.366 29.630 0.00 0.00 32.01 3.10
224 225 9.885934 GAAAAGTAAAAGTGAATCCTTCTTCTC 57.114 33.333 0.00 0.00 0.00 2.87
225 226 9.634021 AGAAAAGTAAAAGTGAATCCTTCTTCT 57.366 29.630 0.00 0.00 0.00 2.85
226 227 9.670719 CAGAAAAGTAAAAGTGAATCCTTCTTC 57.329 33.333 0.00 0.00 0.00 2.87
227 228 9.190317 ACAGAAAAGTAAAAGTGAATCCTTCTT 57.810 29.630 0.00 0.00 0.00 2.52
228 229 8.753497 ACAGAAAAGTAAAAGTGAATCCTTCT 57.247 30.769 0.00 0.00 0.00 2.85
229 230 8.841300 AGACAGAAAAGTAAAAGTGAATCCTTC 58.159 33.333 0.00 0.00 0.00 3.46
230 231 8.753497 AGACAGAAAAGTAAAAGTGAATCCTT 57.247 30.769 0.00 0.00 0.00 3.36
231 232 8.753497 AAGACAGAAAAGTAAAAGTGAATCCT 57.247 30.769 0.00 0.00 0.00 3.24
232 233 9.452065 GAAAGACAGAAAAGTAAAAGTGAATCC 57.548 33.333 0.00 0.00 0.00 3.01
233 234 9.159470 CGAAAGACAGAAAAGTAAAAGTGAATC 57.841 33.333 0.00 0.00 0.00 2.52
234 235 8.674607 ACGAAAGACAGAAAAGTAAAAGTGAAT 58.325 29.630 0.00 0.00 0.00 2.57
235 236 8.036273 ACGAAAGACAGAAAAGTAAAAGTGAA 57.964 30.769 0.00 0.00 0.00 3.18
236 237 7.548075 AGACGAAAGACAGAAAAGTAAAAGTGA 59.452 33.333 0.00 0.00 0.00 3.41
237 238 7.685594 AGACGAAAGACAGAAAAGTAAAAGTG 58.314 34.615 0.00 0.00 0.00 3.16
238 239 7.764901 AGAGACGAAAGACAGAAAAGTAAAAGT 59.235 33.333 0.00 0.00 0.00 2.66
239 240 8.132604 AGAGACGAAAGACAGAAAAGTAAAAG 57.867 34.615 0.00 0.00 0.00 2.27
240 241 7.980099 AGAGAGACGAAAGACAGAAAAGTAAAA 59.020 33.333 0.00 0.00 0.00 1.52
241 242 7.490000 AGAGAGACGAAAGACAGAAAAGTAAA 58.510 34.615 0.00 0.00 0.00 2.01
242 243 7.040473 AGAGAGACGAAAGACAGAAAAGTAA 57.960 36.000 0.00 0.00 0.00 2.24
243 244 6.566187 CGAGAGAGACGAAAGACAGAAAAGTA 60.566 42.308 0.00 0.00 0.00 2.24
244 245 5.523438 AGAGAGACGAAAGACAGAAAAGT 57.477 39.130 0.00 0.00 0.00 2.66
245 246 4.615121 CGAGAGAGACGAAAGACAGAAAAG 59.385 45.833 0.00 0.00 0.00 2.27
246 247 4.036498 ACGAGAGAGACGAAAGACAGAAAA 59.964 41.667 0.00 0.00 34.70 2.29
247 248 3.564644 ACGAGAGAGACGAAAGACAGAAA 59.435 43.478 0.00 0.00 34.70 2.52
248 249 3.139850 ACGAGAGAGACGAAAGACAGAA 58.860 45.455 0.00 0.00 34.70 3.02
249 250 2.768698 ACGAGAGAGACGAAAGACAGA 58.231 47.619 0.00 0.00 34.70 3.41
250 251 3.546002 AACGAGAGAGACGAAAGACAG 57.454 47.619 0.00 0.00 34.70 3.51
251 252 3.984508 AAACGAGAGAGACGAAAGACA 57.015 42.857 0.00 0.00 34.70 3.41
252 253 5.210715 TGTAAAACGAGAGAGACGAAAGAC 58.789 41.667 0.00 0.00 34.70 3.01
253 254 5.428496 TGTAAAACGAGAGAGACGAAAGA 57.572 39.130 0.00 0.00 34.70 2.52
254 255 5.856986 TGATGTAAAACGAGAGAGACGAAAG 59.143 40.000 0.00 0.00 34.70 2.62
255 256 5.765176 TGATGTAAAACGAGAGAGACGAAA 58.235 37.500 0.00 0.00 34.70 3.46
256 257 5.366829 TGATGTAAAACGAGAGAGACGAA 57.633 39.130 0.00 0.00 34.70 3.85
257 258 5.152097 GTTGATGTAAAACGAGAGAGACGA 58.848 41.667 0.00 0.00 34.70 4.20
258 259 4.915667 TGTTGATGTAAAACGAGAGAGACG 59.084 41.667 0.00 0.00 0.00 4.18
259 260 6.421202 AGTTGTTGATGTAAAACGAGAGAGAC 59.579 38.462 0.00 0.00 0.00 3.36
260 261 6.513180 AGTTGTTGATGTAAAACGAGAGAGA 58.487 36.000 0.00 0.00 0.00 3.10
261 262 6.771188 AGTTGTTGATGTAAAACGAGAGAG 57.229 37.500 0.00 0.00 0.00 3.20
262 263 6.018262 CCAAGTTGTTGATGTAAAACGAGAGA 60.018 38.462 1.45 0.00 35.46 3.10
263 264 6.136071 CCAAGTTGTTGATGTAAAACGAGAG 58.864 40.000 1.45 0.00 35.46 3.20
264 265 5.587043 ACCAAGTTGTTGATGTAAAACGAGA 59.413 36.000 1.45 0.00 35.46 4.04
265 266 5.681105 CACCAAGTTGTTGATGTAAAACGAG 59.319 40.000 1.45 0.00 35.46 4.18
266 267 5.124138 ACACCAAGTTGTTGATGTAAAACGA 59.876 36.000 7.48 0.00 38.79 3.85
267 268 5.336744 ACACCAAGTTGTTGATGTAAAACG 58.663 37.500 7.48 0.00 38.79 3.60
281 282 4.086457 ACTTGTTTCCTCAACACCAAGTT 58.914 39.130 0.00 0.00 45.54 2.66
282 283 3.694566 GACTTGTTTCCTCAACACCAAGT 59.305 43.478 0.00 0.00 45.54 3.16
283 284 3.066760 GGACTTGTTTCCTCAACACCAAG 59.933 47.826 0.00 0.00 45.54 3.61
284 285 3.020984 GGACTTGTTTCCTCAACACCAA 58.979 45.455 0.00 0.00 45.54 3.67
285 286 2.650322 GGACTTGTTTCCTCAACACCA 58.350 47.619 0.00 0.00 45.54 4.17
286 287 1.602377 CGGACTTGTTTCCTCAACACC 59.398 52.381 0.00 0.00 45.54 4.16
287 288 2.031683 CACGGACTTGTTTCCTCAACAC 59.968 50.000 0.00 0.00 45.54 3.32
288 289 2.093394 TCACGGACTTGTTTCCTCAACA 60.093 45.455 0.00 0.00 44.11 3.33
289 290 2.544267 CTCACGGACTTGTTTCCTCAAC 59.456 50.000 0.00 0.00 32.88 3.18
290 291 2.432874 TCTCACGGACTTGTTTCCTCAA 59.567 45.455 0.00 0.00 32.88 3.02
294 295 4.830826 ATTTTCTCACGGACTTGTTTCC 57.169 40.909 0.00 0.00 0.00 3.13
318 319 6.184789 GGGTTACCAAGGAGTGAATATGAAA 58.815 40.000 2.98 0.00 36.50 2.69
345 348 1.681793 ACCGAAGATATGTCCACGGAG 59.318 52.381 23.67 6.37 42.27 4.63
346 349 1.771565 ACCGAAGATATGTCCACGGA 58.228 50.000 23.67 0.00 42.27 4.69
363 366 2.152016 GTTGAGCTGGGTAGTTGAACC 58.848 52.381 0.00 0.00 38.94 3.62
385 388 2.070650 GGGACCGGGGCTTGACTAT 61.071 63.158 6.32 0.00 0.00 2.12
430 435 2.526046 CGGGAGTGAGGTTGGGGTT 61.526 63.158 0.00 0.00 0.00 4.11
480 485 0.781920 GGGTAGGGGAGTGGGTTTTT 59.218 55.000 0.00 0.00 0.00 1.94
481 486 0.103554 AGGGTAGGGGAGTGGGTTTT 60.104 55.000 0.00 0.00 0.00 2.43
482 487 0.103554 AAGGGTAGGGGAGTGGGTTT 60.104 55.000 0.00 0.00 0.00 3.27
483 488 0.549413 GAAGGGTAGGGGAGTGGGTT 60.549 60.000 0.00 0.00 0.00 4.11
484 489 1.082392 GAAGGGTAGGGGAGTGGGT 59.918 63.158 0.00 0.00 0.00 4.51
485 490 0.253207 AAGAAGGGTAGGGGAGTGGG 60.253 60.000 0.00 0.00 0.00 4.61
486 491 1.205055 GAAGAAGGGTAGGGGAGTGG 58.795 60.000 0.00 0.00 0.00 4.00
487 492 2.112190 GAGAAGAAGGGTAGGGGAGTG 58.888 57.143 0.00 0.00 0.00 3.51
488 493 1.008571 GGAGAAGAAGGGTAGGGGAGT 59.991 57.143 0.00 0.00 0.00 3.85
489 494 1.693083 GGGAGAAGAAGGGTAGGGGAG 60.693 61.905 0.00 0.00 0.00 4.30
490 495 0.342313 GGGAGAAGAAGGGTAGGGGA 59.658 60.000 0.00 0.00 0.00 4.81
491 496 0.694783 GGGGAGAAGAAGGGTAGGGG 60.695 65.000 0.00 0.00 0.00 4.79
492 497 0.694783 GGGGGAGAAGAAGGGTAGGG 60.695 65.000 0.00 0.00 0.00 3.53
493 498 0.343726 AGGGGGAGAAGAAGGGTAGG 59.656 60.000 0.00 0.00 0.00 3.18
494 499 1.693083 GGAGGGGGAGAAGAAGGGTAG 60.693 61.905 0.00 0.00 0.00 3.18
495 500 0.342313 GGAGGGGGAGAAGAAGGGTA 59.658 60.000 0.00 0.00 0.00 3.69
507 512 2.360191 CATTGGTGTGGGAGGGGG 59.640 66.667 0.00 0.00 0.00 5.40
508 513 2.092904 AACCATTGGTGTGGGAGGGG 62.093 60.000 9.62 0.00 43.77 4.79
949 955 4.024556 CGACTCCAATTATCAGCATTCCAC 60.025 45.833 0.00 0.00 0.00 4.02
974 999 5.766222 AGAAGCAAAGACAAATAAGCAGTG 58.234 37.500 0.00 0.00 0.00 3.66
997 1039 2.876485 GCTGCGCTAGGAGATAGACCTA 60.876 54.545 9.73 0.00 38.15 3.08
1014 1056 1.101331 CCCATTTCTCCAAGAGCTGC 58.899 55.000 0.00 0.00 0.00 5.25
1036 1078 1.376543 AGCTTGGCATCGTCATCTTG 58.623 50.000 0.00 0.00 0.00 3.02
1056 1098 3.610040 ATACGCACCTTGAAGATGACA 57.390 42.857 0.00 0.00 0.00 3.58
1098 1140 3.117512 AGCCCTGGTTACCATCCTAAATG 60.118 47.826 3.88 0.00 30.82 2.32
1127 1223 6.535508 AGCTATGGAAAAACACGATACTCTTC 59.464 38.462 0.00 0.00 0.00 2.87
1151 1247 4.292186 TGATTCCCTGAAACTTCTCCAG 57.708 45.455 0.00 0.00 0.00 3.86
1167 1263 5.034152 TCAGTTTCTTTGTTGCGTTGATTC 58.966 37.500 0.00 0.00 0.00 2.52
1174 1270 5.036737 AGTTCAATCAGTTTCTTTGTTGCG 58.963 37.500 0.00 0.00 0.00 4.85
1183 1279 6.039382 ACACTGGGTAAAGTTCAATCAGTTTC 59.961 38.462 0.00 0.00 32.51 2.78
1186 1282 5.048846 ACACTGGGTAAAGTTCAATCAGT 57.951 39.130 0.00 0.00 34.78 3.41
1187 1283 5.995282 TGTACACTGGGTAAAGTTCAATCAG 59.005 40.000 0.00 0.00 32.72 2.90
1188 1284 5.931294 TGTACACTGGGTAAAGTTCAATCA 58.069 37.500 0.00 0.00 32.72 2.57
1189 1285 5.995897 ACTGTACACTGGGTAAAGTTCAATC 59.004 40.000 7.09 0.00 46.33 2.67
1190 1286 5.937111 ACTGTACACTGGGTAAAGTTCAAT 58.063 37.500 7.09 0.00 46.33 2.57
1191 1287 5.362105 ACTGTACACTGGGTAAAGTTCAA 57.638 39.130 7.09 0.00 46.33 2.69
1192 1288 6.675413 ATACTGTACACTGGGTAAAGTTCA 57.325 37.500 17.58 1.93 46.33 3.18
1199 1295 8.896744 GCGAATATATATACTGTACACTGGGTA 58.103 37.037 0.00 0.00 0.00 3.69
1200 1296 7.614583 AGCGAATATATATACTGTACACTGGGT 59.385 37.037 0.00 0.00 0.00 4.51
1201 1297 7.997482 AGCGAATATATATACTGTACACTGGG 58.003 38.462 0.00 0.00 0.00 4.45
1216 1312 8.462016 GCATTTCCTTTGGATTAGCGAATATAT 58.538 33.333 0.00 0.00 0.00 0.86
1217 1313 7.094377 GGCATTTCCTTTGGATTAGCGAATATA 60.094 37.037 0.00 0.00 0.00 0.86
1218 1314 6.294731 GGCATTTCCTTTGGATTAGCGAATAT 60.295 38.462 0.00 0.00 0.00 1.28
1219 1315 5.009610 GGCATTTCCTTTGGATTAGCGAATA 59.990 40.000 0.00 0.00 0.00 1.75
1220 1316 4.202151 GGCATTTCCTTTGGATTAGCGAAT 60.202 41.667 0.00 0.00 0.00 3.34
1224 1320 4.470334 TTGGCATTTCCTTTGGATTAGC 57.530 40.909 0.00 0.00 35.26 3.09
1244 1340 7.712797 AGTTTTTGTCAATTACTCCGACATTT 58.287 30.769 0.00 0.00 39.29 2.32
1245 1341 7.272037 AGTTTTTGTCAATTACTCCGACATT 57.728 32.000 0.00 0.00 39.29 2.71
1246 1342 6.877611 AGTTTTTGTCAATTACTCCGACAT 57.122 33.333 0.00 0.00 39.29 3.06
1247 1343 6.203338 GGTAGTTTTTGTCAATTACTCCGACA 59.797 38.462 4.00 0.00 37.87 4.35
1248 1344 6.203338 TGGTAGTTTTTGTCAATTACTCCGAC 59.797 38.462 4.00 0.00 0.00 4.79
1249 1345 6.203338 GTGGTAGTTTTTGTCAATTACTCCGA 59.797 38.462 4.00 0.00 0.00 4.55
1250 1346 6.017770 TGTGGTAGTTTTTGTCAATTACTCCG 60.018 38.462 4.00 0.00 0.00 4.63
1368 1466 5.607477 ACAGTTAAATCGGTCTTCAACTCA 58.393 37.500 0.00 0.00 0.00 3.41
1525 1674 1.946768 GACAGGTAGCAACAACAGCAA 59.053 47.619 0.00 0.00 0.00 3.91
2381 2553 4.142687 ACGAGTTTTAGCACCATGTAATGC 60.143 41.667 5.86 5.86 44.97 3.56
2382 2554 5.106712 ACACGAGTTTTAGCACCATGTAATG 60.107 40.000 0.00 0.00 46.21 1.90
2384 2556 4.382291 ACACGAGTTTTAGCACCATGTAA 58.618 39.130 0.00 0.00 0.00 2.41
2385 2557 3.991773 GACACGAGTTTTAGCACCATGTA 59.008 43.478 0.00 0.00 0.00 2.29
2386 2558 2.806244 GACACGAGTTTTAGCACCATGT 59.194 45.455 0.00 0.00 0.00 3.21
2387 2559 2.159627 GGACACGAGTTTTAGCACCATG 59.840 50.000 0.00 0.00 0.00 3.66
2390 2562 1.798813 CAGGACACGAGTTTTAGCACC 59.201 52.381 0.00 0.00 0.00 5.01
2391 2563 1.194772 GCAGGACACGAGTTTTAGCAC 59.805 52.381 0.00 0.00 0.00 4.40
2392 2564 1.508632 GCAGGACACGAGTTTTAGCA 58.491 50.000 0.00 0.00 0.00 3.49
2393 2565 0.438830 CGCAGGACACGAGTTTTAGC 59.561 55.000 0.00 0.00 0.00 3.09
2394 2566 1.719780 GTCGCAGGACACGAGTTTTAG 59.280 52.381 0.00 0.00 42.91 1.85
2395 2567 1.774639 GTCGCAGGACACGAGTTTTA 58.225 50.000 0.00 0.00 42.91 1.52
2396 2568 2.601562 GTCGCAGGACACGAGTTTT 58.398 52.632 0.00 0.00 42.91 2.43
2430 2614 7.648908 TGCTGAATATCACAACAGTTTCAAAAG 59.351 33.333 0.00 0.00 33.57 2.27
2433 2617 6.631971 TGCTGAATATCACAACAGTTTCAA 57.368 33.333 0.00 0.00 33.57 2.69
2436 2620 7.436118 ACAATTGCTGAATATCACAACAGTTT 58.564 30.769 5.05 0.00 33.57 2.66
2446 2630 6.744537 GTGACAACTGACAATTGCTGAATATC 59.255 38.462 5.05 0.00 0.00 1.63
2464 2648 7.132694 TCACATTCATATCACTTGTGACAAC 57.867 36.000 5.53 0.00 41.11 3.32
2465 2649 6.372381 CCTCACATTCATATCACTTGTGACAA 59.628 38.462 5.53 0.00 41.11 3.18
2466 2650 5.876460 CCTCACATTCATATCACTTGTGACA 59.124 40.000 5.53 0.00 41.11 3.58
2469 2653 6.748333 AACCTCACATTCATATCACTTGTG 57.252 37.500 0.00 0.00 39.16 3.33
2470 2654 6.716628 ACAAACCTCACATTCATATCACTTGT 59.283 34.615 0.00 0.00 0.00 3.16
2471 2655 7.149569 ACAAACCTCACATTCATATCACTTG 57.850 36.000 0.00 0.00 0.00 3.16
2472 2656 7.309377 CCAACAAACCTCACATTCATATCACTT 60.309 37.037 0.00 0.00 0.00 3.16
2473 2657 6.151648 CCAACAAACCTCACATTCATATCACT 59.848 38.462 0.00 0.00 0.00 3.41
2474 2658 6.071952 ACCAACAAACCTCACATTCATATCAC 60.072 38.462 0.00 0.00 0.00 3.06
2475 2659 6.009589 ACCAACAAACCTCACATTCATATCA 58.990 36.000 0.00 0.00 0.00 2.15
2476 2660 6.150976 TGACCAACAAACCTCACATTCATATC 59.849 38.462 0.00 0.00 0.00 1.63
2477 2661 6.009589 TGACCAACAAACCTCACATTCATAT 58.990 36.000 0.00 0.00 0.00 1.78
2478 2662 5.380900 TGACCAACAAACCTCACATTCATA 58.619 37.500 0.00 0.00 0.00 2.15
2495 2679 1.059584 TCCTGCTCCCTGTTGACCAA 61.060 55.000 0.00 0.00 0.00 3.67
2498 2682 1.374758 CGTCCTGCTCCCTGTTGAC 60.375 63.158 0.00 0.00 0.00 3.18
2587 2771 0.464373 ATCAGGCAATACAGCACGGG 60.464 55.000 0.00 0.00 35.83 5.28
2777 2961 7.704727 TCCAGTAAAATAGGGAATTTTCCTCA 58.295 34.615 0.00 0.00 42.88 3.86
2852 3036 3.443681 CACCCATGACAAGTCCATTAACC 59.556 47.826 0.00 0.00 0.00 2.85
2997 3183 8.978874 AGATTATTAAGGTGATGCATGTACAA 57.021 30.769 2.46 0.00 0.00 2.41
3178 3389 8.436200 GTTCATTCACTTCAGTCTGTATGTAAC 58.564 37.037 0.00 0.00 0.00 2.50
3179 3390 8.147704 TGTTCATTCACTTCAGTCTGTATGTAA 58.852 33.333 0.00 0.00 0.00 2.41
3180 3391 7.666623 TGTTCATTCACTTCAGTCTGTATGTA 58.333 34.615 0.00 0.00 0.00 2.29
3181 3392 6.524734 TGTTCATTCACTTCAGTCTGTATGT 58.475 36.000 0.00 0.00 0.00 2.29
3183 3394 7.498900 TGTTTGTTCATTCACTTCAGTCTGTAT 59.501 33.333 0.00 0.00 0.00 2.29
3184 3395 6.821160 TGTTTGTTCATTCACTTCAGTCTGTA 59.179 34.615 0.00 0.00 0.00 2.74
3185 3396 5.647658 TGTTTGTTCATTCACTTCAGTCTGT 59.352 36.000 0.00 0.00 0.00 3.41
3186 3397 5.967674 GTGTTTGTTCATTCACTTCAGTCTG 59.032 40.000 0.00 0.00 0.00 3.51
3187 3398 5.647658 TGTGTTTGTTCATTCACTTCAGTCT 59.352 36.000 0.00 0.00 0.00 3.24
3188 3399 5.739161 GTGTGTTTGTTCATTCACTTCAGTC 59.261 40.000 0.00 0.00 0.00 3.51
3189 3400 5.415701 AGTGTGTTTGTTCATTCACTTCAGT 59.584 36.000 0.00 0.00 33.26 3.41
3190 3401 5.883661 AGTGTGTTTGTTCATTCACTTCAG 58.116 37.500 0.00 0.00 33.26 3.02
3191 3402 5.895636 AGTGTGTTTGTTCATTCACTTCA 57.104 34.783 0.00 0.00 33.26 3.02
3192 3403 8.682128 TTTTAGTGTGTTTGTTCATTCACTTC 57.318 30.769 0.00 0.00 37.35 3.01
3194 3405 9.730420 GTATTTTAGTGTGTTTGTTCATTCACT 57.270 29.630 0.00 0.00 39.11 3.41
3195 3406 8.678510 CGTATTTTAGTGTGTTTGTTCATTCAC 58.321 33.333 0.00 0.00 0.00 3.18
3196 3407 8.399425 ACGTATTTTAGTGTGTTTGTTCATTCA 58.601 29.630 0.00 0.00 0.00 2.57
3197 3408 8.776680 ACGTATTTTAGTGTGTTTGTTCATTC 57.223 30.769 0.00 0.00 0.00 2.67
3198 3409 8.617809 AGACGTATTTTAGTGTGTTTGTTCATT 58.382 29.630 0.00 0.00 0.00 2.57
3199 3410 8.067784 CAGACGTATTTTAGTGTGTTTGTTCAT 58.932 33.333 0.00 0.00 0.00 2.57
3200 3411 7.064847 ACAGACGTATTTTAGTGTGTTTGTTCA 59.935 33.333 0.00 0.00 41.18 3.18
3201 3412 7.404203 ACAGACGTATTTTAGTGTGTTTGTTC 58.596 34.615 0.00 0.00 41.18 3.18
3202 3413 7.311364 ACAGACGTATTTTAGTGTGTTTGTT 57.689 32.000 0.00 0.00 41.18 2.83
3203 3414 6.913873 ACAGACGTATTTTAGTGTGTTTGT 57.086 33.333 0.00 0.00 41.18 2.83
3218 3429 9.292195 TCTGAATTGGATGTATATACAGACGTA 57.708 33.333 19.80 8.54 39.92 3.57
3247 3458 9.798994 TTCCGACTTATAAGATGTTCTAACTTC 57.201 33.333 19.38 0.94 34.37 3.01
3366 3577 1.765904 TGTAGTCCAACACTTGCCTCA 59.234 47.619 0.00 0.00 36.43 3.86
3447 3658 6.406961 GGGATGTGAGAATGGGAAATTAAACC 60.407 42.308 0.00 0.00 0.00 3.27
3486 3697 6.126361 ACAATATCCCTCTGAGTAAGCCATTT 60.126 38.462 3.66 0.00 0.00 2.32
3541 3753 3.196039 CCATGACCAATTTTCTCATGCCA 59.804 43.478 0.00 0.00 39.93 4.92
3630 3842 2.906389 ACCAGTCAAAGCCAGATACTCA 59.094 45.455 0.00 0.00 0.00 3.41
3678 3890 2.047274 GTAGCAAGACCGGCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
3868 4080 9.812347 ATCTTCCAATTTCTGCCATACATATTA 57.188 29.630 0.00 0.00 0.00 0.98
4051 4263 9.504708 TTCAAATAAGTAAACACGGAATCCTTA 57.495 29.630 0.00 0.00 0.00 2.69
4086 4298 9.933723 TTACTAGTACATTACTCAAAGAAACCC 57.066 33.333 0.91 0.00 40.14 4.11
4327 4545 0.179282 GTGTAGAACGAGCAAACGCG 60.179 55.000 3.53 3.53 45.37 6.01
4330 4548 3.381949 ACTGAGTGTAGAACGAGCAAAC 58.618 45.455 0.00 0.00 0.00 2.93
4409 4633 6.368779 AGGGCGATATAATTTTAGGTGCTA 57.631 37.500 0.00 0.00 0.00 3.49
4528 4755 9.702253 TCATAGAAGGAATGAAGACTAGTAAGT 57.298 33.333 0.00 0.00 32.60 2.24
4534 4761 7.093333 TGCTGTTCATAGAAGGAATGAAGACTA 60.093 37.037 0.00 0.00 42.43 2.59
4535 4762 6.112058 GCTGTTCATAGAAGGAATGAAGACT 58.888 40.000 0.00 0.00 42.43 3.24
4536 4763 5.877012 TGCTGTTCATAGAAGGAATGAAGAC 59.123 40.000 0.00 0.00 42.43 3.01
4537 4764 5.877012 GTGCTGTTCATAGAAGGAATGAAGA 59.123 40.000 0.00 0.00 42.43 2.87
4538 4765 5.645067 TGTGCTGTTCATAGAAGGAATGAAG 59.355 40.000 0.00 0.00 42.43 3.02
4539 4766 5.559770 TGTGCTGTTCATAGAAGGAATGAA 58.440 37.500 0.00 0.00 40.21 2.57
4540 4767 5.164620 TGTGCTGTTCATAGAAGGAATGA 57.835 39.130 0.00 0.00 0.00 2.57
4541 4768 5.413833 AGTTGTGCTGTTCATAGAAGGAATG 59.586 40.000 0.00 0.00 0.00 2.67
4542 4769 5.413833 CAGTTGTGCTGTTCATAGAAGGAAT 59.586 40.000 0.00 0.00 40.27 3.01
4543 4770 4.756642 CAGTTGTGCTGTTCATAGAAGGAA 59.243 41.667 0.00 0.00 40.27 3.36
4544 4771 4.318332 CAGTTGTGCTGTTCATAGAAGGA 58.682 43.478 0.00 0.00 40.27 3.36
4545 4772 4.675190 CAGTTGTGCTGTTCATAGAAGG 57.325 45.455 0.00 0.00 40.27 3.46
4610 4837 9.206870 CCACAAGCAAAACAGTAATTTATCATT 57.793 29.630 0.00 0.00 0.00 2.57
4657 4884 2.869101 TCCATTGATTTCCGTCCACA 57.131 45.000 0.00 0.00 0.00 4.17
4660 4887 3.744660 AGCTATCCATTGATTTCCGTCC 58.255 45.455 0.00 0.00 32.18 4.79
4805 5032 7.489757 GTGTAGGCACATTTTTAAACAAGAACA 59.510 33.333 0.00 0.00 44.64 3.18
4819 5046 9.289203 GCTATTAATGGCAAGTGTAGGCACATT 62.289 40.741 17.98 0.00 44.68 2.71
4826 5053 4.881273 TGTGGCTATTAATGGCAAGTGTAG 59.119 41.667 23.22 0.00 41.55 2.74
4905 5133 4.522789 ACACCGCACTCCATAAAAAGATTT 59.477 37.500 0.00 0.00 0.00 2.17
4934 5162 0.686789 ATGCAAGCAAAAGAACCCCC 59.313 50.000 0.00 0.00 0.00 5.40
5117 5346 4.750598 TCGTTTGGTTCATTCATTGTACGA 59.249 37.500 0.00 0.00 32.67 3.43
5134 5363 5.821204 AGATTCAACCAAAAGACTCGTTTG 58.179 37.500 9.72 9.72 36.03 2.93
5180 5412 6.405731 GCTCAGAGCTCTAATACCCTATCATG 60.406 46.154 17.75 0.00 38.45 3.07
5235 5467 1.292941 TGAGAGAGGGGAGGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69
5260 5492 5.695851 AGAACAGATGTGCGAGAAAATTT 57.304 34.783 0.00 0.00 0.00 1.82
5262 5494 4.756642 TGAAGAACAGATGTGCGAGAAAAT 59.243 37.500 0.00 0.00 0.00 1.82
5272 5504 2.815589 GCCCCAGTTGAAGAACAGATGT 60.816 50.000 0.00 0.00 34.17 3.06
5491 7784 5.046878 ACGTTGGTGACATTGGAAGAGTATA 60.047 40.000 0.00 0.00 42.32 1.47
5492 7785 4.253685 CGTTGGTGACATTGGAAGAGTAT 58.746 43.478 0.00 0.00 42.32 2.12
5733 9169 6.357367 ACAGGAGATGAGTTTTACTTGTGTT 58.643 36.000 0.00 0.00 0.00 3.32
5807 9248 6.508777 AGTTAGAACAGAGTTTGAGACAGAC 58.491 40.000 0.00 0.00 0.00 3.51
5836 9277 6.882678 GGTTCAACCCTTCTTTACATAGCTAA 59.117 38.462 0.00 0.00 30.04 3.09
5984 9431 5.070446 CCTGCAGTTGGAGTATACCTGATAA 59.930 44.000 13.81 0.00 0.00 1.75
6224 9671 1.920610 AGAAGATGCTTGCAAAGGCT 58.079 45.000 11.46 0.00 46.35 4.58
6266 9713 4.637534 GCTGAAAATAAGATGACAGAGGCA 59.362 41.667 0.00 0.00 0.00 4.75
6440 9908 0.740868 TGAGCTTGGATTTCTCGCGG 60.741 55.000 6.13 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.