Multiple sequence alignment - TraesCS3D01G290400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G290400 chr3D 100.000 2198 0 0 1 2198 400498977 400501174 0.000000e+00 4060.0
1 TraesCS3D01G290400 chr3B 95.493 1176 34 12 387 1553 526178999 526180164 0.000000e+00 1860.0
2 TraesCS3D01G290400 chr3B 89.137 626 42 13 1577 2198 526180153 526180756 0.000000e+00 756.0
3 TraesCS3D01G290400 chr3B 87.143 140 16 2 1 139 113704572 113704710 8.120000e-35 158.0
4 TraesCS3D01G290400 chr3B 86.131 137 18 1 3 139 113704356 113704221 1.760000e-31 147.0
5 TraesCS3D01G290400 chr3A 94.424 538 17 7 754 1279 519390811 519391347 0.000000e+00 815.0
6 TraesCS3D01G290400 chr3A 87.500 376 32 6 382 756 519390021 519390382 9.380000e-114 420.0
7 TraesCS3D01G290400 chr3A 90.187 214 16 2 1482 1690 519391551 519391764 7.730000e-70 274.0
8 TraesCS3D01G290400 chr3A 83.392 283 23 10 94 372 32998541 32998803 7.840000e-60 241.0
9 TraesCS3D01G290400 chr3A 87.117 163 19 2 209 369 39657428 39657590 1.340000e-42 183.0
10 TraesCS3D01G290400 chr3A 86.420 162 17 2 209 368 39572899 39573057 2.900000e-39 172.0
11 TraesCS3D01G290400 chr3A 85.890 163 17 5 209 368 38690682 38690841 3.750000e-38 169.0
12 TraesCS3D01G290400 chr3A 78.543 247 31 13 131 372 39183548 39183777 2.270000e-30 143.0
13 TraesCS3D01G290400 chr7B 85.106 376 51 5 1 373 361227204 361227577 1.590000e-101 379.0
14 TraesCS3D01G290400 chr5D 85.358 321 42 3 55 372 485931351 485931033 5.850000e-86 327.0
15 TraesCS3D01G290400 chr7D 82.804 378 29 14 1 372 32650530 32650877 2.740000e-79 305.0
16 TraesCS3D01G290400 chr7D 78.919 370 57 11 7 368 557093230 557092874 4.720000e-57 231.0
17 TraesCS3D01G290400 chr7D 89.928 139 13 1 1 139 557093286 557093423 6.240000e-41 178.0
18 TraesCS3D01G290400 chr7D 86.441 59 7 1 391 449 259273 259330 1.820000e-06 63.9
19 TraesCS3D01G290400 chr7A 79.144 374 54 11 3 372 328626369 328626016 1.010000e-58 237.0
20 TraesCS3D01G290400 chr2B 83.556 225 30 4 148 372 231246133 231246350 1.030000e-48 204.0
21 TraesCS3D01G290400 chr2B 87.037 162 15 3 214 372 422993494 422993652 6.240000e-41 178.0
22 TraesCS3D01G290400 chr2B 85.612 139 20 0 1 139 231246015 231246153 1.760000e-31 147.0
23 TraesCS3D01G290400 chr6B 85.542 166 19 5 205 368 540209484 540209646 3.750000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G290400 chr3D 400498977 400501174 2197 False 4060 4060 100.000000 1 2198 1 chr3D.!!$F1 2197
1 TraesCS3D01G290400 chr3B 526178999 526180756 1757 False 1308 1860 92.315000 387 2198 2 chr3B.!!$F2 1811
2 TraesCS3D01G290400 chr3A 519390021 519391764 1743 False 503 815 90.703667 382 1690 3 chr3A.!!$F6 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.031721 CCGACAGGGTACTAATCGGC 59.968 60.0 12.93 0.0 43.48 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 2102 0.03563 CTTGAGGCCCTTGAGTGAGG 60.036 60.0 0.0 0.0 36.52 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.419280 CGAGACTACGAGACTACACTACA 58.581 47.826 0.00 0.00 35.09 2.74
23 24 4.861462 CGAGACTACGAGACTACACTACAA 59.139 45.833 0.00 0.00 35.09 2.41
24 25 5.519566 CGAGACTACGAGACTACACTACAAT 59.480 44.000 0.00 0.00 35.09 2.71
25 26 6.508246 CGAGACTACGAGACTACACTACAATG 60.508 46.154 0.00 0.00 35.09 2.82
26 27 5.064962 AGACTACGAGACTACACTACAATGC 59.935 44.000 0.00 0.00 0.00 3.56
27 28 4.942483 ACTACGAGACTACACTACAATGCT 59.058 41.667 0.00 0.00 0.00 3.79
28 29 4.785511 ACGAGACTACACTACAATGCTT 57.214 40.909 0.00 0.00 0.00 3.91
29 30 5.892160 ACGAGACTACACTACAATGCTTA 57.108 39.130 0.00 0.00 0.00 3.09
30 31 5.638783 ACGAGACTACACTACAATGCTTAC 58.361 41.667 0.00 0.00 0.00 2.34
31 32 5.035443 CGAGACTACACTACAATGCTTACC 58.965 45.833 0.00 0.00 0.00 2.85
32 33 5.340439 AGACTACACTACAATGCTTACCC 57.660 43.478 0.00 0.00 0.00 3.69
33 34 4.775780 AGACTACACTACAATGCTTACCCA 59.224 41.667 0.00 0.00 0.00 4.51
34 35 4.828829 ACTACACTACAATGCTTACCCAC 58.171 43.478 0.00 0.00 0.00 4.61
35 36 3.067684 ACACTACAATGCTTACCCACC 57.932 47.619 0.00 0.00 0.00 4.61
36 37 2.642807 ACACTACAATGCTTACCCACCT 59.357 45.455 0.00 0.00 0.00 4.00
37 38 3.073946 ACACTACAATGCTTACCCACCTT 59.926 43.478 0.00 0.00 0.00 3.50
38 39 4.287585 ACACTACAATGCTTACCCACCTTA 59.712 41.667 0.00 0.00 0.00 2.69
39 40 4.876107 CACTACAATGCTTACCCACCTTAG 59.124 45.833 0.00 0.00 0.00 2.18
40 41 4.534897 ACTACAATGCTTACCCACCTTAGT 59.465 41.667 0.00 0.00 0.00 2.24
41 42 3.686016 ACAATGCTTACCCACCTTAGTG 58.314 45.455 0.00 0.00 44.12 2.74
42 43 2.420058 ATGCTTACCCACCTTAGTGC 57.580 50.000 0.00 0.00 43.09 4.40
43 44 0.326927 TGCTTACCCACCTTAGTGCC 59.673 55.000 0.00 0.00 43.09 5.01
44 45 0.393944 GCTTACCCACCTTAGTGCCC 60.394 60.000 0.00 0.00 43.09 5.36
45 46 0.988832 CTTACCCACCTTAGTGCCCA 59.011 55.000 0.00 0.00 43.09 5.36
46 47 0.988832 TTACCCACCTTAGTGCCCAG 59.011 55.000 0.00 0.00 43.09 4.45
47 48 0.117541 TACCCACCTTAGTGCCCAGA 59.882 55.000 0.00 0.00 43.09 3.86
48 49 0.770557 ACCCACCTTAGTGCCCAGAA 60.771 55.000 0.00 0.00 43.09 3.02
49 50 0.035056 CCCACCTTAGTGCCCAGAAG 60.035 60.000 0.00 0.00 43.09 2.85
50 51 0.984230 CCACCTTAGTGCCCAGAAGA 59.016 55.000 0.00 0.00 43.09 2.87
51 52 1.065854 CCACCTTAGTGCCCAGAAGAG 60.066 57.143 0.00 0.00 43.09 2.85
52 53 1.065854 CACCTTAGTGCCCAGAAGAGG 60.066 57.143 0.00 0.00 37.14 3.69
67 68 2.377136 GAGGGAAACTCAGGCCTGA 58.623 57.895 33.04 33.04 45.85 3.86
76 77 3.985410 TCAGGCCTGAGAAAATGGG 57.015 52.632 32.00 1.64 34.14 4.00
77 78 0.332632 TCAGGCCTGAGAAAATGGGG 59.667 55.000 32.00 1.04 34.14 4.96
78 79 1.000866 AGGCCTGAGAAAATGGGGC 59.999 57.895 3.11 0.00 43.48 5.80
79 80 1.305213 GGCCTGAGAAAATGGGGCA 60.305 57.895 0.00 0.00 44.04 5.36
80 81 0.688749 GGCCTGAGAAAATGGGGCAT 60.689 55.000 0.00 0.00 44.04 4.40
81 82 0.462789 GCCTGAGAAAATGGGGCATG 59.537 55.000 0.00 0.00 42.08 4.06
82 83 0.462789 CCTGAGAAAATGGGGCATGC 59.537 55.000 9.90 9.90 0.00 4.06
83 84 1.187974 CTGAGAAAATGGGGCATGCA 58.812 50.000 21.36 0.00 0.00 3.96
84 85 0.896923 TGAGAAAATGGGGCATGCAC 59.103 50.000 21.36 17.47 0.00 4.57
85 86 0.176449 GAGAAAATGGGGCATGCACC 59.824 55.000 32.92 32.92 40.69 5.01
86 87 0.252375 AGAAAATGGGGCATGCACCT 60.252 50.000 37.64 19.80 40.96 4.00
87 88 1.006998 AGAAAATGGGGCATGCACCTA 59.993 47.619 37.64 24.74 40.96 3.08
88 89 2.041701 GAAAATGGGGCATGCACCTAT 58.958 47.619 37.64 25.77 40.96 2.57
89 90 1.708341 AAATGGGGCATGCACCTATC 58.292 50.000 37.64 13.83 40.96 2.08
90 91 0.557238 AATGGGGCATGCACCTATCA 59.443 50.000 37.64 19.98 40.96 2.15
91 92 0.557238 ATGGGGCATGCACCTATCAA 59.443 50.000 37.64 19.56 40.96 2.57
92 93 0.395586 TGGGGCATGCACCTATCAAC 60.396 55.000 37.64 11.87 40.96 3.18
93 94 0.106519 GGGGCATGCACCTATCAACT 60.107 55.000 32.34 0.00 36.36 3.16
94 95 1.686115 GGGGCATGCACCTATCAACTT 60.686 52.381 32.34 0.00 36.36 2.66
95 96 2.422803 GGGGCATGCACCTATCAACTTA 60.423 50.000 32.34 0.00 36.36 2.24
96 97 2.618709 GGGCATGCACCTATCAACTTAC 59.381 50.000 21.36 0.00 0.00 2.34
97 98 3.278574 GGCATGCACCTATCAACTTACA 58.721 45.455 21.36 0.00 0.00 2.41
98 99 3.313526 GGCATGCACCTATCAACTTACAG 59.686 47.826 21.36 0.00 0.00 2.74
99 100 3.313526 GCATGCACCTATCAACTTACAGG 59.686 47.826 14.21 0.00 0.00 4.00
100 101 4.769688 CATGCACCTATCAACTTACAGGA 58.230 43.478 0.00 0.00 32.25 3.86
101 102 4.901197 TGCACCTATCAACTTACAGGAA 57.099 40.909 0.00 0.00 32.25 3.36
102 103 4.832248 TGCACCTATCAACTTACAGGAAG 58.168 43.478 0.00 0.00 41.37 3.46
103 104 3.623510 GCACCTATCAACTTACAGGAAGC 59.376 47.826 0.00 0.00 38.92 3.86
104 105 4.192317 CACCTATCAACTTACAGGAAGCC 58.808 47.826 0.00 0.00 38.92 4.35
105 106 3.844211 ACCTATCAACTTACAGGAAGCCA 59.156 43.478 0.00 0.00 38.92 4.75
106 107 4.288626 ACCTATCAACTTACAGGAAGCCAA 59.711 41.667 0.00 0.00 38.92 4.52
107 108 5.044846 ACCTATCAACTTACAGGAAGCCAAT 60.045 40.000 0.00 0.00 38.92 3.16
108 109 5.888161 CCTATCAACTTACAGGAAGCCAATT 59.112 40.000 0.00 0.00 38.92 2.32
109 110 7.054124 CCTATCAACTTACAGGAAGCCAATTA 58.946 38.462 0.00 0.00 38.92 1.40
110 111 7.227512 CCTATCAACTTACAGGAAGCCAATTAG 59.772 40.741 0.00 0.00 38.92 1.73
111 112 6.121776 TCAACTTACAGGAAGCCAATTAGA 57.878 37.500 0.00 0.00 38.92 2.10
112 113 6.539173 TCAACTTACAGGAAGCCAATTAGAA 58.461 36.000 0.00 0.00 38.92 2.10
113 114 6.430000 TCAACTTACAGGAAGCCAATTAGAAC 59.570 38.462 0.00 0.00 38.92 3.01
114 115 6.128138 ACTTACAGGAAGCCAATTAGAACT 57.872 37.500 0.00 0.00 38.92 3.01
115 116 7.253905 ACTTACAGGAAGCCAATTAGAACTA 57.746 36.000 0.00 0.00 38.92 2.24
116 117 7.104290 ACTTACAGGAAGCCAATTAGAACTAC 58.896 38.462 0.00 0.00 38.92 2.73
117 118 5.763876 ACAGGAAGCCAATTAGAACTACT 57.236 39.130 0.00 0.00 0.00 2.57
118 119 6.128138 ACAGGAAGCCAATTAGAACTACTT 57.872 37.500 0.00 0.00 0.00 2.24
119 120 5.940470 ACAGGAAGCCAATTAGAACTACTTG 59.060 40.000 5.38 5.38 0.00 3.16
120 121 5.940470 CAGGAAGCCAATTAGAACTACTTGT 59.060 40.000 9.75 0.00 0.00 3.16
121 122 6.092807 CAGGAAGCCAATTAGAACTACTTGTC 59.907 42.308 9.75 0.06 0.00 3.18
122 123 5.354513 GGAAGCCAATTAGAACTACTTGTCC 59.645 44.000 9.75 7.34 0.00 4.02
123 124 5.763876 AGCCAATTAGAACTACTTGTCCT 57.236 39.130 9.75 4.82 0.00 3.85
124 125 6.869206 AGCCAATTAGAACTACTTGTCCTA 57.131 37.500 9.75 0.00 0.00 2.94
125 126 6.641474 AGCCAATTAGAACTACTTGTCCTAC 58.359 40.000 9.75 0.00 0.00 3.18
126 127 5.519206 GCCAATTAGAACTACTTGTCCTACG 59.481 44.000 9.75 0.00 0.00 3.51
127 128 6.040878 CCAATTAGAACTACTTGTCCTACGG 58.959 44.000 9.75 0.00 0.00 4.02
128 129 6.350780 CCAATTAGAACTACTTGTCCTACGGT 60.351 42.308 9.75 0.00 0.00 4.83
129 130 7.148018 CCAATTAGAACTACTTGTCCTACGGTA 60.148 40.741 9.75 0.00 0.00 4.02
130 131 7.944729 ATTAGAACTACTTGTCCTACGGTAA 57.055 36.000 0.00 0.00 0.00 2.85
131 132 5.893897 AGAACTACTTGTCCTACGGTAAG 57.106 43.478 0.00 0.00 0.00 2.34
132 133 4.157472 AGAACTACTTGTCCTACGGTAAGC 59.843 45.833 0.00 0.00 0.00 3.09
133 134 2.757314 ACTACTTGTCCTACGGTAAGCC 59.243 50.000 0.00 0.00 0.00 4.35
134 135 1.636148 ACTTGTCCTACGGTAAGCCA 58.364 50.000 0.00 0.00 34.09 4.75
135 136 1.972795 ACTTGTCCTACGGTAAGCCAA 59.027 47.619 0.00 0.00 34.09 4.52
136 137 2.570302 ACTTGTCCTACGGTAAGCCAAT 59.430 45.455 0.00 0.00 34.09 3.16
137 138 3.008704 ACTTGTCCTACGGTAAGCCAATT 59.991 43.478 0.00 0.00 34.09 2.32
138 139 4.223477 ACTTGTCCTACGGTAAGCCAATTA 59.777 41.667 0.00 0.00 34.09 1.40
139 140 5.104652 ACTTGTCCTACGGTAAGCCAATTAT 60.105 40.000 0.00 0.00 34.09 1.28
140 141 6.098695 ACTTGTCCTACGGTAAGCCAATTATA 59.901 38.462 0.00 0.00 34.09 0.98
141 142 6.482898 TGTCCTACGGTAAGCCAATTATAA 57.517 37.500 0.00 0.00 34.09 0.98
142 143 6.282930 TGTCCTACGGTAAGCCAATTATAAC 58.717 40.000 0.00 0.00 34.09 1.89
143 144 6.098695 TGTCCTACGGTAAGCCAATTATAACT 59.901 38.462 0.00 0.00 34.09 2.24
144 145 7.287466 TGTCCTACGGTAAGCCAATTATAACTA 59.713 37.037 0.00 0.00 34.09 2.24
145 146 8.143835 GTCCTACGGTAAGCCAATTATAACTAA 58.856 37.037 0.00 0.00 34.09 2.24
146 147 8.703743 TCCTACGGTAAGCCAATTATAACTAAA 58.296 33.333 0.00 0.00 34.09 1.85
147 148 8.768019 CCTACGGTAAGCCAATTATAACTAAAC 58.232 37.037 0.00 0.00 34.09 2.01
148 149 7.237920 ACGGTAAGCCAATTATAACTAAACG 57.762 36.000 0.00 0.00 34.09 3.60
149 150 6.818142 ACGGTAAGCCAATTATAACTAAACGT 59.182 34.615 0.00 0.00 34.09 3.99
150 151 7.010460 ACGGTAAGCCAATTATAACTAAACGTC 59.990 37.037 0.00 0.00 34.09 4.34
151 152 7.517259 CGGTAAGCCAATTATAACTAAACGTCC 60.517 40.741 0.00 0.00 34.09 4.79
152 153 7.496920 GGTAAGCCAATTATAACTAAACGTCCT 59.503 37.037 0.00 0.00 34.09 3.85
153 154 9.533253 GTAAGCCAATTATAACTAAACGTCCTA 57.467 33.333 0.00 0.00 0.00 2.94
154 155 8.429493 AAGCCAATTATAACTAAACGTCCTAC 57.571 34.615 0.00 0.00 0.00 3.18
155 156 7.789026 AGCCAATTATAACTAAACGTCCTACT 58.211 34.615 0.00 0.00 0.00 2.57
156 157 7.709613 AGCCAATTATAACTAAACGTCCTACTG 59.290 37.037 0.00 0.00 0.00 2.74
157 158 7.493645 GCCAATTATAACTAAACGTCCTACTGT 59.506 37.037 0.00 0.00 0.00 3.55
161 162 9.741647 ATTATAACTAAACGTCCTACTGTAAGC 57.258 33.333 0.00 0.00 37.60 3.09
162 163 5.718724 AACTAAACGTCCTACTGTAAGCT 57.281 39.130 0.00 0.00 37.60 3.74
163 164 6.824305 AACTAAACGTCCTACTGTAAGCTA 57.176 37.500 0.00 0.00 37.60 3.32
164 165 6.824305 ACTAAACGTCCTACTGTAAGCTAA 57.176 37.500 0.00 0.00 37.60 3.09
165 166 6.616017 ACTAAACGTCCTACTGTAAGCTAAC 58.384 40.000 0.00 0.00 37.60 2.34
166 167 5.718724 AAACGTCCTACTGTAAGCTAACT 57.281 39.130 0.00 0.00 37.60 2.24
167 168 6.824305 AAACGTCCTACTGTAAGCTAACTA 57.176 37.500 0.00 0.00 37.60 2.24
168 169 6.434018 AACGTCCTACTGTAAGCTAACTAG 57.566 41.667 0.00 0.00 37.60 2.57
169 170 5.495640 ACGTCCTACTGTAAGCTAACTAGT 58.504 41.667 0.00 0.00 37.60 2.57
170 171 5.942826 ACGTCCTACTGTAAGCTAACTAGTT 59.057 40.000 13.68 13.68 37.60 2.24
171 172 6.093357 ACGTCCTACTGTAAGCTAACTAGTTC 59.907 42.308 12.39 0.00 37.60 3.01
172 173 6.458070 CGTCCTACTGTAAGCTAACTAGTTCC 60.458 46.154 12.39 4.74 37.60 3.62
173 174 6.376581 GTCCTACTGTAAGCTAACTAGTTCCA 59.623 42.308 12.39 0.00 37.60 3.53
174 175 6.602406 TCCTACTGTAAGCTAACTAGTTCCAG 59.398 42.308 12.39 6.20 37.60 3.86
175 176 6.377712 CCTACTGTAAGCTAACTAGTTCCAGT 59.622 42.308 12.39 15.81 37.60 4.00
176 177 6.270156 ACTGTAAGCTAACTAGTTCCAGTC 57.730 41.667 12.39 2.07 37.60 3.51
177 178 5.106237 ACTGTAAGCTAACTAGTTCCAGTCG 60.106 44.000 12.39 0.00 37.60 4.18
178 179 2.943449 AGCTAACTAGTTCCAGTCGC 57.057 50.000 12.39 6.61 0.00 5.19
179 180 2.448453 AGCTAACTAGTTCCAGTCGCT 58.552 47.619 12.39 8.67 33.13 4.93
180 181 2.424246 AGCTAACTAGTTCCAGTCGCTC 59.576 50.000 12.39 0.00 32.79 5.03
181 182 2.163815 GCTAACTAGTTCCAGTCGCTCA 59.836 50.000 12.39 0.00 0.00 4.26
182 183 3.367087 GCTAACTAGTTCCAGTCGCTCAA 60.367 47.826 12.39 0.00 0.00 3.02
183 184 2.726832 ACTAGTTCCAGTCGCTCAAC 57.273 50.000 0.00 0.00 0.00 3.18
184 185 1.961394 ACTAGTTCCAGTCGCTCAACA 59.039 47.619 0.00 0.00 0.00 3.33
185 186 2.029828 ACTAGTTCCAGTCGCTCAACAG 60.030 50.000 0.00 0.00 0.00 3.16
186 187 0.753262 AGTTCCAGTCGCTCAACAGT 59.247 50.000 0.00 0.00 0.00 3.55
187 188 1.139058 AGTTCCAGTCGCTCAACAGTT 59.861 47.619 0.00 0.00 0.00 3.16
188 189 2.364324 AGTTCCAGTCGCTCAACAGTTA 59.636 45.455 0.00 0.00 0.00 2.24
189 190 2.724977 TCCAGTCGCTCAACAGTTAG 57.275 50.000 0.00 0.00 0.00 2.34
190 191 2.235891 TCCAGTCGCTCAACAGTTAGA 58.764 47.619 0.00 0.00 0.00 2.10
191 192 2.030185 TCCAGTCGCTCAACAGTTAGAC 60.030 50.000 0.00 0.00 0.00 2.59
192 193 1.979469 CAGTCGCTCAACAGTTAGACG 59.021 52.381 0.00 0.00 34.21 4.18
193 194 1.878088 AGTCGCTCAACAGTTAGACGA 59.122 47.619 0.00 0.84 34.21 4.20
194 195 1.977412 GTCGCTCAACAGTTAGACGAC 59.023 52.381 14.65 14.65 41.12 4.34
195 196 1.605232 TCGCTCAACAGTTAGACGACA 59.395 47.619 0.00 0.00 0.00 4.35
196 197 1.979469 CGCTCAACAGTTAGACGACAG 59.021 52.381 0.00 0.00 0.00 3.51
197 198 2.329379 GCTCAACAGTTAGACGACAGG 58.671 52.381 0.00 0.00 0.00 4.00
198 199 2.030185 GCTCAACAGTTAGACGACAGGA 60.030 50.000 0.00 0.00 0.00 3.86
199 200 3.827625 CTCAACAGTTAGACGACAGGAG 58.172 50.000 0.00 0.00 0.00 3.69
200 201 2.557056 TCAACAGTTAGACGACAGGAGG 59.443 50.000 0.00 0.00 0.00 4.30
201 202 0.889306 ACAGTTAGACGACAGGAGGC 59.111 55.000 0.00 0.00 0.00 4.70
202 203 1.178276 CAGTTAGACGACAGGAGGCT 58.822 55.000 0.00 0.00 0.00 4.58
203 204 2.290768 ACAGTTAGACGACAGGAGGCTA 60.291 50.000 0.00 0.00 0.00 3.93
204 205 2.097791 CAGTTAGACGACAGGAGGCTAC 59.902 54.545 0.00 0.00 0.00 3.58
205 206 2.089980 GTTAGACGACAGGAGGCTACA 58.910 52.381 0.00 0.00 0.00 2.74
206 207 2.039818 TAGACGACAGGAGGCTACAG 57.960 55.000 0.00 0.00 0.00 2.74
207 208 1.139947 GACGACAGGAGGCTACAGC 59.860 63.158 0.00 0.00 41.14 4.40
208 209 1.595993 GACGACAGGAGGCTACAGCA 61.596 60.000 0.00 0.00 44.36 4.41
209 210 1.140589 CGACAGGAGGCTACAGCAG 59.859 63.158 0.00 0.00 44.36 4.24
217 218 3.414272 GCTACAGCAGCCCAATCG 58.586 61.111 0.00 0.00 45.23 3.34
218 219 2.182842 GCTACAGCAGCCCAATCGG 61.183 63.158 0.00 0.00 45.23 4.18
235 236 4.752879 GCCTGCCGTTAGCCGACA 62.753 66.667 0.00 0.00 42.71 4.35
236 237 2.509336 CCTGCCGTTAGCCGACAG 60.509 66.667 0.00 0.00 45.44 3.51
237 238 2.509336 CTGCCGTTAGCCGACAGG 60.509 66.667 0.00 0.00 42.57 4.00
238 239 4.077184 TGCCGTTAGCCGACAGGG 62.077 66.667 0.00 0.00 42.71 4.45
247 248 3.564455 GCCGACAGGGTACTAATCG 57.436 57.895 0.00 0.00 38.44 3.34
249 250 0.031721 CCGACAGGGTACTAATCGGC 59.968 60.000 12.93 0.00 43.48 5.54
250 251 0.031721 CGACAGGGTACTAATCGGCC 59.968 60.000 0.00 0.00 33.29 6.13
251 252 1.411041 GACAGGGTACTAATCGGCCT 58.589 55.000 0.00 0.00 0.00 5.19
252 253 2.590821 GACAGGGTACTAATCGGCCTA 58.409 52.381 0.00 0.00 0.00 3.93
253 254 2.295629 GACAGGGTACTAATCGGCCTAC 59.704 54.545 0.00 0.00 0.00 3.18
254 255 2.091444 ACAGGGTACTAATCGGCCTACT 60.091 50.000 0.00 0.00 0.00 2.57
255 256 2.557490 CAGGGTACTAATCGGCCTACTC 59.443 54.545 0.00 0.00 0.00 2.59
256 257 2.446285 AGGGTACTAATCGGCCTACTCT 59.554 50.000 0.00 0.00 0.00 3.24
257 258 3.117208 AGGGTACTAATCGGCCTACTCTT 60.117 47.826 0.00 0.00 0.00 2.85
258 259 3.005578 GGGTACTAATCGGCCTACTCTTG 59.994 52.174 0.00 0.00 0.00 3.02
259 260 3.005578 GGTACTAATCGGCCTACTCTTGG 59.994 52.174 0.00 0.00 0.00 3.61
266 267 2.695314 GCCTACTCTTGGCCGATTG 58.305 57.895 0.00 0.00 44.32 2.67
267 268 0.815615 GCCTACTCTTGGCCGATTGG 60.816 60.000 0.00 0.00 44.32 3.16
268 269 0.830648 CCTACTCTTGGCCGATTGGA 59.169 55.000 1.98 0.00 37.49 3.53
269 270 1.209504 CCTACTCTTGGCCGATTGGAA 59.790 52.381 1.98 0.00 37.49 3.53
270 271 2.280628 CTACTCTTGGCCGATTGGAAC 58.719 52.381 1.98 0.00 37.49 3.62
271 272 0.322546 ACTCTTGGCCGATTGGAACC 60.323 55.000 1.98 0.00 37.49 3.62
272 273 0.322456 CTCTTGGCCGATTGGAACCA 60.322 55.000 1.98 0.00 37.49 3.67
273 274 0.322456 TCTTGGCCGATTGGAACCAG 60.322 55.000 1.98 0.00 37.49 4.00
274 275 0.609131 CTTGGCCGATTGGAACCAGT 60.609 55.000 1.98 0.00 37.49 4.00
275 276 0.608035 TTGGCCGATTGGAACCAGTC 60.608 55.000 1.98 6.33 37.49 3.51
276 277 1.002624 GGCCGATTGGAACCAGTCA 60.003 57.895 14.76 0.00 37.49 3.41
277 278 1.026718 GGCCGATTGGAACCAGTCAG 61.027 60.000 14.76 6.26 37.49 3.51
278 279 1.648467 GCCGATTGGAACCAGTCAGC 61.648 60.000 14.76 11.63 37.49 4.26
279 280 1.026718 CCGATTGGAACCAGTCAGCC 61.027 60.000 14.76 0.00 37.49 4.85
280 281 1.361668 CGATTGGAACCAGTCAGCCG 61.362 60.000 14.76 0.31 33.10 5.52
281 282 1.648467 GATTGGAACCAGTCAGCCGC 61.648 60.000 10.69 0.00 33.63 6.53
282 283 3.842925 TTGGAACCAGTCAGCCGCC 62.843 63.158 0.00 0.00 0.00 6.13
283 284 4.329545 GGAACCAGTCAGCCGCCA 62.330 66.667 0.00 0.00 0.00 5.69
284 285 2.743928 GAACCAGTCAGCCGCCAG 60.744 66.667 0.00 0.00 0.00 4.85
285 286 3.240134 GAACCAGTCAGCCGCCAGA 62.240 63.158 0.00 0.00 0.00 3.86
286 287 2.527951 GAACCAGTCAGCCGCCAGAT 62.528 60.000 0.00 0.00 0.00 2.90
287 288 2.513204 CCAGTCAGCCGCCAGATG 60.513 66.667 0.00 0.00 0.00 2.90
288 289 2.513204 CAGTCAGCCGCCAGATGG 60.513 66.667 0.00 0.00 38.53 3.51
301 302 3.685139 CCAGATGGCCGACTATGTATT 57.315 47.619 0.00 0.00 0.00 1.89
302 303 4.801330 CCAGATGGCCGACTATGTATTA 57.199 45.455 0.00 0.00 0.00 0.98
303 304 5.344743 CCAGATGGCCGACTATGTATTAT 57.655 43.478 0.00 0.00 0.00 1.28
304 305 5.734720 CCAGATGGCCGACTATGTATTATT 58.265 41.667 0.00 0.00 0.00 1.40
305 306 6.173339 CCAGATGGCCGACTATGTATTATTT 58.827 40.000 0.00 0.00 0.00 1.40
306 307 6.655003 CCAGATGGCCGACTATGTATTATTTT 59.345 38.462 0.00 0.00 0.00 1.82
307 308 7.174946 CCAGATGGCCGACTATGTATTATTTTT 59.825 37.037 0.00 0.00 0.00 1.94
396 397 5.474876 AGCTTTTTCTTGGGTCTAGTGATTG 59.525 40.000 0.00 0.00 0.00 2.67
404 405 4.084287 TGGGTCTAGTGATTGTAGTCGTT 58.916 43.478 0.00 0.00 0.00 3.85
415 417 5.358725 TGATTGTAGTCGTTGCTAGGTGATA 59.641 40.000 0.00 0.00 0.00 2.15
422 424 5.717178 AGTCGTTGCTAGGTGATATATGGAT 59.283 40.000 0.00 0.00 0.00 3.41
426 428 7.067129 TCGTTGCTAGGTGATATATGGATCTAC 59.933 40.741 0.00 0.00 0.00 2.59
495 497 2.023673 TGGACAGACCACTTTTTGCAG 58.976 47.619 0.00 0.00 44.64 4.41
583 586 3.951775 TTTGTTTTGGGGAATCATCGG 57.048 42.857 0.00 0.00 0.00 4.18
935 1370 2.421529 GCCCTCCCACATTAAATCGAGT 60.422 50.000 0.00 0.00 0.00 4.18
1330 1809 5.510671 CGATGCTGTTCTGTTTTTACTGTT 58.489 37.500 0.00 0.00 0.00 3.16
1335 1814 3.955551 TGTTCTGTTTTTACTGTTCCCCC 59.044 43.478 0.00 0.00 0.00 5.40
1338 1817 4.466827 TCTGTTTTTACTGTTCCCCCTTC 58.533 43.478 0.00 0.00 0.00 3.46
1340 1819 3.052793 TGTTTTTACTGTTCCCCCTTCCA 60.053 43.478 0.00 0.00 0.00 3.53
1350 1829 1.798941 TCCCCCTTCCATTTCCCTTTT 59.201 47.619 0.00 0.00 0.00 2.27
1405 1888 0.604511 TCGTCTGTGTACGCTCCTGA 60.605 55.000 8.10 0.00 42.56 3.86
1406 1889 0.179187 CGTCTGTGTACGCTCCTGAG 60.179 60.000 8.10 0.00 35.87 3.35
1488 1971 2.987413 TGTTGCTCGGTTATGCTTTG 57.013 45.000 0.00 0.00 0.00 2.77
1489 1972 2.226330 TGTTGCTCGGTTATGCTTTGT 58.774 42.857 0.00 0.00 0.00 2.83
1502 1985 2.626840 TGCTTTGTTTTTGCCTGAACC 58.373 42.857 0.00 0.00 0.00 3.62
1529 2012 2.659016 CTTGCTGCTCGGGTCTCA 59.341 61.111 0.00 0.00 0.00 3.27
1561 2044 0.517316 GCGTGCTCCCTGTGTTAAAG 59.483 55.000 0.00 0.00 0.00 1.85
1562 2045 1.876416 GCGTGCTCCCTGTGTTAAAGA 60.876 52.381 0.00 0.00 0.00 2.52
1586 2074 4.363991 AAAGAAGAGAATGTGTGCTCCT 57.636 40.909 0.00 0.00 0.00 3.69
1614 2102 1.379642 CCAAATGGAAGCTCCTCGGC 61.380 60.000 0.00 0.00 37.46 5.54
1672 2160 2.614983 CGAAGAGGAAAACCAAACGGAA 59.385 45.455 0.00 0.00 0.00 4.30
1682 2170 0.941542 CCAAACGGAAAACTGCTCGA 59.058 50.000 0.00 0.00 0.00 4.04
1690 2178 0.238289 AAAACTGCTCGATTGGTGCG 59.762 50.000 0.00 0.00 37.96 5.34
1692 2180 1.568612 AACTGCTCGATTGGTGCGTG 61.569 55.000 0.00 0.00 37.96 5.34
1693 2181 3.372676 CTGCTCGATTGGTGCGTGC 62.373 63.158 0.00 0.00 45.27 5.34
1694 2182 3.121030 GCTCGATTGGTGCGTGCT 61.121 61.111 0.00 0.00 42.76 4.40
1695 2183 3.084579 CTCGATTGGTGCGTGCTC 58.915 61.111 0.00 0.00 0.00 4.26
1696 2184 2.434185 TCGATTGGTGCGTGCTCC 60.434 61.111 6.01 6.01 0.00 4.70
1697 2185 3.499737 CGATTGGTGCGTGCTCCC 61.500 66.667 10.19 2.73 0.00 4.30
1721 2211 0.455410 TATTTTGACCATGGCTGCGC 59.545 50.000 13.04 0.00 0.00 6.09
1801 2291 3.362040 TCCCGAACGGAGGAAGTAA 57.638 52.632 15.07 0.00 34.86 2.24
1802 2292 1.856629 TCCCGAACGGAGGAAGTAAT 58.143 50.000 15.07 0.00 34.86 1.89
1803 2293 3.017048 TCCCGAACGGAGGAAGTAATA 57.983 47.619 15.07 0.00 34.86 0.98
1804 2294 3.569491 TCCCGAACGGAGGAAGTAATAT 58.431 45.455 15.07 0.00 34.86 1.28
1805 2295 3.319972 TCCCGAACGGAGGAAGTAATATG 59.680 47.826 15.07 0.00 34.86 1.78
1828 2318 5.759763 TGTATGATGGTATGTTGAGTCATGC 59.240 40.000 0.00 0.00 31.95 4.06
1902 2393 9.482627 TTTTGGAACGCAAAACTATATGAAAAT 57.517 25.926 0.00 0.00 0.00 1.82
2042 2533 5.508200 AGATAGTCCGTTGAGAGAACATC 57.492 43.478 0.00 0.00 0.00 3.06
2043 2534 4.950475 AGATAGTCCGTTGAGAGAACATCA 59.050 41.667 0.00 0.00 0.00 3.07
2048 2539 5.360999 AGTCCGTTGAGAGAACATCATATGA 59.639 40.000 8.10 8.10 0.00 2.15
2073 2565 8.587952 AGTTTTAATCCACAAAACAAGCATAC 57.412 30.769 11.86 0.00 44.58 2.39
2108 2600 8.742777 CAAAATCCTCTATGAAAATCCTTGTGA 58.257 33.333 0.00 0.00 0.00 3.58
2114 2606 4.970662 ATGAAAATCCTTGTGACATCCG 57.029 40.909 0.00 0.00 0.00 4.18
2162 2654 1.453928 GATGTTACTGGGGCTGCCC 60.454 63.158 29.93 29.93 44.51 5.36
2163 2655 3.344137 ATGTTACTGGGGCTGCCCG 62.344 63.158 30.32 20.26 46.66 6.13
2189 2681 9.113876 GAGTAACAAACAATTTTCTGGTTATCG 57.886 33.333 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.419280 TGTAGTGTAGTCTCGTAGTCTCG 58.581 47.826 0.00 0.00 0.00 4.04
1 2 6.707711 CATTGTAGTGTAGTCTCGTAGTCTC 58.292 44.000 0.00 0.00 0.00 3.36
2 3 5.064962 GCATTGTAGTGTAGTCTCGTAGTCT 59.935 44.000 0.00 0.00 0.00 3.24
3 4 5.064962 AGCATTGTAGTGTAGTCTCGTAGTC 59.935 44.000 0.00 0.00 0.00 2.59
4 5 4.942483 AGCATTGTAGTGTAGTCTCGTAGT 59.058 41.667 0.00 0.00 0.00 2.73
5 6 5.487153 AGCATTGTAGTGTAGTCTCGTAG 57.513 43.478 0.00 0.00 0.00 3.51
6 7 5.892160 AAGCATTGTAGTGTAGTCTCGTA 57.108 39.130 0.00 0.00 0.00 3.43
7 8 4.785511 AAGCATTGTAGTGTAGTCTCGT 57.214 40.909 0.00 0.00 0.00 4.18
8 9 5.035443 GGTAAGCATTGTAGTGTAGTCTCG 58.965 45.833 0.00 0.00 0.00 4.04
9 10 5.105473 TGGGTAAGCATTGTAGTGTAGTCTC 60.105 44.000 0.00 0.00 0.00 3.36
10 11 4.775780 TGGGTAAGCATTGTAGTGTAGTCT 59.224 41.667 0.00 0.00 0.00 3.24
11 12 4.868734 GTGGGTAAGCATTGTAGTGTAGTC 59.131 45.833 0.00 0.00 0.00 2.59
12 13 4.323257 GGTGGGTAAGCATTGTAGTGTAGT 60.323 45.833 0.00 0.00 0.00 2.73
13 14 4.081087 AGGTGGGTAAGCATTGTAGTGTAG 60.081 45.833 0.00 0.00 0.00 2.74
14 15 3.841845 AGGTGGGTAAGCATTGTAGTGTA 59.158 43.478 0.00 0.00 0.00 2.90
15 16 2.642807 AGGTGGGTAAGCATTGTAGTGT 59.357 45.455 0.00 0.00 0.00 3.55
16 17 3.350219 AGGTGGGTAAGCATTGTAGTG 57.650 47.619 0.00 0.00 0.00 2.74
17 18 4.534897 ACTAAGGTGGGTAAGCATTGTAGT 59.465 41.667 0.00 0.00 0.00 2.73
18 19 4.876107 CACTAAGGTGGGTAAGCATTGTAG 59.124 45.833 0.00 0.00 39.59 2.74
19 20 4.839121 CACTAAGGTGGGTAAGCATTGTA 58.161 43.478 0.00 0.00 39.59 2.41
20 21 3.686016 CACTAAGGTGGGTAAGCATTGT 58.314 45.455 0.00 0.00 39.59 2.71
21 22 2.423538 GCACTAAGGTGGGTAAGCATTG 59.576 50.000 0.00 0.00 43.18 2.82
22 23 2.620627 GGCACTAAGGTGGGTAAGCATT 60.621 50.000 0.00 0.00 43.18 3.56
23 24 1.064685 GGCACTAAGGTGGGTAAGCAT 60.065 52.381 0.00 0.00 43.18 3.79
24 25 0.326927 GGCACTAAGGTGGGTAAGCA 59.673 55.000 0.00 0.00 43.18 3.91
25 26 0.393944 GGGCACTAAGGTGGGTAAGC 60.394 60.000 0.00 0.00 43.18 3.09
26 27 0.988832 TGGGCACTAAGGTGGGTAAG 59.011 55.000 0.00 0.00 43.18 2.34
27 28 0.988832 CTGGGCACTAAGGTGGGTAA 59.011 55.000 0.00 0.00 43.18 2.85
28 29 0.117541 TCTGGGCACTAAGGTGGGTA 59.882 55.000 0.00 0.00 43.18 3.69
29 30 0.770557 TTCTGGGCACTAAGGTGGGT 60.771 55.000 0.00 0.00 43.18 4.51
30 31 0.035056 CTTCTGGGCACTAAGGTGGG 60.035 60.000 0.00 0.00 43.18 4.61
31 32 0.984230 TCTTCTGGGCACTAAGGTGG 59.016 55.000 2.40 0.00 43.18 4.61
32 33 1.065854 CCTCTTCTGGGCACTAAGGTG 60.066 57.143 2.40 0.00 45.53 4.00
33 34 1.280457 CCTCTTCTGGGCACTAAGGT 58.720 55.000 2.40 0.00 0.00 3.50
34 35 0.543749 CCCTCTTCTGGGCACTAAGG 59.456 60.000 2.40 0.00 40.84 2.69
35 36 1.573108 TCCCTCTTCTGGGCACTAAG 58.427 55.000 0.00 0.00 46.67 2.18
36 37 2.038863 TTCCCTCTTCTGGGCACTAA 57.961 50.000 0.00 0.00 46.67 2.24
37 38 1.628846 GTTTCCCTCTTCTGGGCACTA 59.371 52.381 0.00 0.00 46.67 2.74
38 39 0.402121 GTTTCCCTCTTCTGGGCACT 59.598 55.000 0.00 0.00 46.67 4.40
39 40 0.402121 AGTTTCCCTCTTCTGGGCAC 59.598 55.000 0.00 0.00 46.67 5.01
40 41 0.693049 GAGTTTCCCTCTTCTGGGCA 59.307 55.000 0.00 0.00 46.67 5.36
41 42 0.693049 TGAGTTTCCCTCTTCTGGGC 59.307 55.000 0.00 0.00 46.67 5.36
43 44 1.339535 GCCTGAGTTTCCCTCTTCTGG 60.340 57.143 0.00 0.00 41.11 3.86
44 45 1.339535 GGCCTGAGTTTCCCTCTTCTG 60.340 57.143 0.00 0.00 41.11 3.02
45 46 0.988063 GGCCTGAGTTTCCCTCTTCT 59.012 55.000 0.00 0.00 41.11 2.85
46 47 0.988063 AGGCCTGAGTTTCCCTCTTC 59.012 55.000 3.11 0.00 41.11 2.87
47 48 0.695347 CAGGCCTGAGTTTCCCTCTT 59.305 55.000 29.88 0.00 41.11 2.85
48 49 0.178891 TCAGGCCTGAGTTTCCCTCT 60.179 55.000 32.00 0.00 41.11 3.69
49 50 2.377136 TCAGGCCTGAGTTTCCCTC 58.623 57.895 32.00 0.00 40.89 4.30
50 51 4.668925 TCAGGCCTGAGTTTCCCT 57.331 55.556 32.00 0.00 34.14 4.20
58 59 0.332632 CCCCATTTTCTCAGGCCTGA 59.667 55.000 33.04 33.04 38.06 3.86
59 60 1.325476 GCCCCATTTTCTCAGGCCTG 61.325 60.000 27.87 27.87 37.66 4.85
60 61 1.000866 GCCCCATTTTCTCAGGCCT 59.999 57.895 0.00 0.00 37.66 5.19
61 62 0.688749 ATGCCCCATTTTCTCAGGCC 60.689 55.000 0.00 0.00 43.18 5.19
62 63 0.462789 CATGCCCCATTTTCTCAGGC 59.537 55.000 0.00 0.00 44.13 4.85
63 64 0.462789 GCATGCCCCATTTTCTCAGG 59.537 55.000 6.36 0.00 0.00 3.86
64 65 1.134907 GTGCATGCCCCATTTTCTCAG 60.135 52.381 16.68 0.00 0.00 3.35
65 66 0.896923 GTGCATGCCCCATTTTCTCA 59.103 50.000 16.68 0.00 0.00 3.27
66 67 0.176449 GGTGCATGCCCCATTTTCTC 59.824 55.000 14.99 0.00 0.00 2.87
67 68 0.252375 AGGTGCATGCCCCATTTTCT 60.252 50.000 21.89 0.00 0.00 2.52
68 69 1.484038 TAGGTGCATGCCCCATTTTC 58.516 50.000 21.89 0.00 0.00 2.29
69 70 2.041701 GATAGGTGCATGCCCCATTTT 58.958 47.619 21.89 2.81 0.00 1.82
70 71 1.063038 TGATAGGTGCATGCCCCATTT 60.063 47.619 21.89 5.12 0.00 2.32
71 72 0.557238 TGATAGGTGCATGCCCCATT 59.443 50.000 21.89 7.80 0.00 3.16
72 73 0.557238 TTGATAGGTGCATGCCCCAT 59.443 50.000 21.89 13.19 0.00 4.00
73 74 0.395586 GTTGATAGGTGCATGCCCCA 60.396 55.000 21.89 8.79 0.00 4.96
74 75 0.106519 AGTTGATAGGTGCATGCCCC 60.107 55.000 16.68 14.22 0.00 5.80
75 76 1.767759 AAGTTGATAGGTGCATGCCC 58.232 50.000 16.68 15.82 0.00 5.36
76 77 3.278574 TGTAAGTTGATAGGTGCATGCC 58.721 45.455 16.68 6.42 0.00 4.40
77 78 3.313526 CCTGTAAGTTGATAGGTGCATGC 59.686 47.826 11.82 11.82 0.00 4.06
78 79 4.769688 TCCTGTAAGTTGATAGGTGCATG 58.230 43.478 0.00 0.00 0.00 4.06
79 80 5.431765 CTTCCTGTAAGTTGATAGGTGCAT 58.568 41.667 0.00 0.00 0.00 3.96
80 81 4.832248 CTTCCTGTAAGTTGATAGGTGCA 58.168 43.478 0.00 0.00 0.00 4.57
81 82 3.623510 GCTTCCTGTAAGTTGATAGGTGC 59.376 47.826 0.00 0.00 37.53 5.01
82 83 4.192317 GGCTTCCTGTAAGTTGATAGGTG 58.808 47.826 0.00 0.00 37.53 4.00
83 84 3.844211 TGGCTTCCTGTAAGTTGATAGGT 59.156 43.478 0.00 0.00 37.53 3.08
84 85 4.487714 TGGCTTCCTGTAAGTTGATAGG 57.512 45.455 0.00 0.00 37.53 2.57
85 86 7.987458 TCTAATTGGCTTCCTGTAAGTTGATAG 59.013 37.037 0.00 0.00 37.53 2.08
86 87 7.857456 TCTAATTGGCTTCCTGTAAGTTGATA 58.143 34.615 0.00 0.00 37.53 2.15
87 88 6.721318 TCTAATTGGCTTCCTGTAAGTTGAT 58.279 36.000 0.00 0.00 37.53 2.57
88 89 6.121776 TCTAATTGGCTTCCTGTAAGTTGA 57.878 37.500 0.00 0.00 37.53 3.18
89 90 6.431234 AGTTCTAATTGGCTTCCTGTAAGTTG 59.569 38.462 0.00 0.00 37.53 3.16
90 91 6.543735 AGTTCTAATTGGCTTCCTGTAAGTT 58.456 36.000 0.00 0.00 37.53 2.66
91 92 6.128138 AGTTCTAATTGGCTTCCTGTAAGT 57.872 37.500 0.00 0.00 37.53 2.24
92 93 7.331791 AGTAGTTCTAATTGGCTTCCTGTAAG 58.668 38.462 0.00 0.00 38.32 2.34
93 94 7.253905 AGTAGTTCTAATTGGCTTCCTGTAA 57.746 36.000 0.00 0.00 0.00 2.41
94 95 6.869206 AGTAGTTCTAATTGGCTTCCTGTA 57.131 37.500 0.00 0.00 0.00 2.74
95 96 5.763876 AGTAGTTCTAATTGGCTTCCTGT 57.236 39.130 0.00 0.00 0.00 4.00
96 97 5.940470 ACAAGTAGTTCTAATTGGCTTCCTG 59.060 40.000 19.23 0.00 30.23 3.86
97 98 6.128138 ACAAGTAGTTCTAATTGGCTTCCT 57.872 37.500 19.23 0.77 30.23 3.36
98 99 5.354513 GGACAAGTAGTTCTAATTGGCTTCC 59.645 44.000 20.13 14.85 33.89 3.46
99 100 6.174049 AGGACAAGTAGTTCTAATTGGCTTC 58.826 40.000 20.13 11.07 32.95 3.86
100 101 6.128138 AGGACAAGTAGTTCTAATTGGCTT 57.872 37.500 20.13 13.18 32.95 4.35
101 102 5.763876 AGGACAAGTAGTTCTAATTGGCT 57.236 39.130 20.13 8.23 32.95 4.75
102 103 5.519206 CGTAGGACAAGTAGTTCTAATTGGC 59.481 44.000 19.23 17.19 40.03 4.52
122 123 8.482429 CGTTTAGTTATAATTGGCTTACCGTAG 58.518 37.037 0.00 0.00 39.70 3.51
123 124 7.978975 ACGTTTAGTTATAATTGGCTTACCGTA 59.021 33.333 0.00 0.00 39.70 4.02
124 125 6.818142 ACGTTTAGTTATAATTGGCTTACCGT 59.182 34.615 0.00 0.00 39.70 4.83
125 126 7.237920 ACGTTTAGTTATAATTGGCTTACCG 57.762 36.000 0.00 0.00 39.70 4.02
126 127 7.496920 AGGACGTTTAGTTATAATTGGCTTACC 59.503 37.037 0.00 0.00 0.00 2.85
127 128 8.429493 AGGACGTTTAGTTATAATTGGCTTAC 57.571 34.615 0.00 0.00 0.00 2.34
128 129 9.533253 GTAGGACGTTTAGTTATAATTGGCTTA 57.467 33.333 0.00 0.00 0.00 3.09
129 130 8.262933 AGTAGGACGTTTAGTTATAATTGGCTT 58.737 33.333 0.00 0.00 0.00 4.35
130 131 7.709613 CAGTAGGACGTTTAGTTATAATTGGCT 59.290 37.037 0.00 0.00 0.00 4.75
131 132 7.493645 ACAGTAGGACGTTTAGTTATAATTGGC 59.506 37.037 0.00 0.00 0.00 4.52
132 133 8.937634 ACAGTAGGACGTTTAGTTATAATTGG 57.062 34.615 0.00 0.00 0.00 3.16
135 136 9.741647 GCTTACAGTAGGACGTTTAGTTATAAT 57.258 33.333 0.00 0.00 0.00 1.28
136 137 8.960591 AGCTTACAGTAGGACGTTTAGTTATAA 58.039 33.333 0.00 0.00 0.00 0.98
137 138 8.511604 AGCTTACAGTAGGACGTTTAGTTATA 57.488 34.615 0.00 0.00 0.00 0.98
138 139 7.401955 AGCTTACAGTAGGACGTTTAGTTAT 57.598 36.000 0.00 0.00 0.00 1.89
139 140 6.824305 AGCTTACAGTAGGACGTTTAGTTA 57.176 37.500 0.00 0.00 0.00 2.24
140 141 5.718724 AGCTTACAGTAGGACGTTTAGTT 57.281 39.130 0.00 0.00 0.00 2.24
141 142 6.432472 AGTTAGCTTACAGTAGGACGTTTAGT 59.568 38.462 5.55 0.00 0.00 2.24
142 143 6.850555 AGTTAGCTTACAGTAGGACGTTTAG 58.149 40.000 5.55 0.00 0.00 1.85
143 144 6.824305 AGTTAGCTTACAGTAGGACGTTTA 57.176 37.500 5.55 0.00 0.00 2.01
144 145 5.718724 AGTTAGCTTACAGTAGGACGTTT 57.281 39.130 5.55 0.00 0.00 3.60
145 146 5.942826 ACTAGTTAGCTTACAGTAGGACGTT 59.057 40.000 5.55 0.00 0.00 3.99
146 147 5.495640 ACTAGTTAGCTTACAGTAGGACGT 58.504 41.667 5.55 0.00 0.00 4.34
147 148 6.434018 AACTAGTTAGCTTACAGTAGGACG 57.566 41.667 6.26 0.00 0.00 4.79
148 149 6.376581 TGGAACTAGTTAGCTTACAGTAGGAC 59.623 42.308 8.42 0.00 0.00 3.85
149 150 6.487828 TGGAACTAGTTAGCTTACAGTAGGA 58.512 40.000 8.42 0.00 0.00 2.94
150 151 6.377712 ACTGGAACTAGTTAGCTTACAGTAGG 59.622 42.308 8.42 0.00 37.06 3.18
151 152 7.393841 ACTGGAACTAGTTAGCTTACAGTAG 57.606 40.000 8.42 1.97 37.06 2.57
152 153 6.093219 CGACTGGAACTAGTTAGCTTACAGTA 59.907 42.308 8.42 0.00 37.97 2.74
153 154 5.106237 CGACTGGAACTAGTTAGCTTACAGT 60.106 44.000 8.42 8.64 39.23 3.55
154 155 5.333513 CGACTGGAACTAGTTAGCTTACAG 58.666 45.833 8.42 5.11 34.40 2.74
155 156 4.380233 GCGACTGGAACTAGTTAGCTTACA 60.380 45.833 8.42 0.00 34.21 2.41
156 157 4.104066 GCGACTGGAACTAGTTAGCTTAC 58.896 47.826 8.42 0.00 34.21 2.34
157 158 4.015084 AGCGACTGGAACTAGTTAGCTTA 58.985 43.478 8.42 0.00 39.92 3.09
158 159 2.826725 AGCGACTGGAACTAGTTAGCTT 59.173 45.455 8.42 0.00 39.92 3.74
159 160 2.424246 GAGCGACTGGAACTAGTTAGCT 59.576 50.000 8.42 16.48 43.01 3.32
160 161 2.163815 TGAGCGACTGGAACTAGTTAGC 59.836 50.000 8.42 7.67 35.94 3.09
161 162 4.167268 GTTGAGCGACTGGAACTAGTTAG 58.833 47.826 8.42 5.97 0.00 2.34
162 163 3.570975 TGTTGAGCGACTGGAACTAGTTA 59.429 43.478 8.42 0.00 0.00 2.24
163 164 2.364324 TGTTGAGCGACTGGAACTAGTT 59.636 45.455 8.13 8.13 0.00 2.24
164 165 1.961394 TGTTGAGCGACTGGAACTAGT 59.039 47.619 0.00 0.00 0.00 2.57
165 166 2.029828 ACTGTTGAGCGACTGGAACTAG 60.030 50.000 0.00 0.00 0.00 2.57
166 167 1.961394 ACTGTTGAGCGACTGGAACTA 59.039 47.619 0.00 0.00 0.00 2.24
167 168 0.753262 ACTGTTGAGCGACTGGAACT 59.247 50.000 0.00 0.00 0.00 3.01
168 169 1.583054 AACTGTTGAGCGACTGGAAC 58.417 50.000 0.00 0.00 0.00 3.62
169 170 2.626266 TCTAACTGTTGAGCGACTGGAA 59.374 45.455 2.69 0.00 0.00 3.53
170 171 2.030185 GTCTAACTGTTGAGCGACTGGA 60.030 50.000 2.69 0.00 0.00 3.86
171 172 2.329379 GTCTAACTGTTGAGCGACTGG 58.671 52.381 2.69 0.00 0.00 4.00
172 173 1.979469 CGTCTAACTGTTGAGCGACTG 59.021 52.381 2.69 0.00 0.00 3.51
173 174 1.878088 TCGTCTAACTGTTGAGCGACT 59.122 47.619 2.69 0.00 0.00 4.18
174 175 1.977412 GTCGTCTAACTGTTGAGCGAC 59.023 52.381 20.44 20.44 39.91 5.19
175 176 1.605232 TGTCGTCTAACTGTTGAGCGA 59.395 47.619 2.69 7.11 0.00 4.93
176 177 1.979469 CTGTCGTCTAACTGTTGAGCG 59.021 52.381 2.69 4.90 0.00 5.03
177 178 2.030185 TCCTGTCGTCTAACTGTTGAGC 60.030 50.000 2.69 0.00 0.00 4.26
178 179 3.366476 CCTCCTGTCGTCTAACTGTTGAG 60.366 52.174 2.69 0.00 0.00 3.02
179 180 2.557056 CCTCCTGTCGTCTAACTGTTGA 59.443 50.000 2.69 0.00 0.00 3.18
180 181 2.927014 GCCTCCTGTCGTCTAACTGTTG 60.927 54.545 2.69 0.00 0.00 3.33
181 182 1.272769 GCCTCCTGTCGTCTAACTGTT 59.727 52.381 0.00 0.00 0.00 3.16
182 183 0.889306 GCCTCCTGTCGTCTAACTGT 59.111 55.000 0.00 0.00 0.00 3.55
183 184 1.178276 AGCCTCCTGTCGTCTAACTG 58.822 55.000 0.00 0.00 0.00 3.16
184 185 2.290768 TGTAGCCTCCTGTCGTCTAACT 60.291 50.000 0.00 0.00 0.00 2.24
185 186 2.089980 TGTAGCCTCCTGTCGTCTAAC 58.910 52.381 0.00 0.00 0.00 2.34
186 187 2.366533 CTGTAGCCTCCTGTCGTCTAA 58.633 52.381 0.00 0.00 0.00 2.10
187 188 2.017623 GCTGTAGCCTCCTGTCGTCTA 61.018 57.143 0.00 0.00 34.31 2.59
188 189 1.316706 GCTGTAGCCTCCTGTCGTCT 61.317 60.000 0.00 0.00 34.31 4.18
189 190 1.139947 GCTGTAGCCTCCTGTCGTC 59.860 63.158 0.00 0.00 34.31 4.20
190 191 1.599606 CTGCTGTAGCCTCCTGTCGT 61.600 60.000 0.80 0.00 41.18 4.34
191 192 1.140589 CTGCTGTAGCCTCCTGTCG 59.859 63.158 0.80 0.00 41.18 4.35
201 202 4.131376 CCGATTGGGCTGCTGTAG 57.869 61.111 0.00 0.00 0.00 2.74
223 224 1.140375 GTACCCTGTCGGCTAACGG 59.860 63.158 0.00 0.00 44.45 4.44
224 225 1.382522 TAGTACCCTGTCGGCTAACG 58.617 55.000 0.00 0.00 46.11 3.18
225 226 3.549625 CGATTAGTACCCTGTCGGCTAAC 60.550 52.174 0.00 0.00 33.26 2.34
226 227 2.620115 CGATTAGTACCCTGTCGGCTAA 59.380 50.000 0.00 0.00 33.26 3.09
227 228 2.224606 CGATTAGTACCCTGTCGGCTA 58.775 52.381 0.00 0.00 33.26 3.93
228 229 1.030457 CGATTAGTACCCTGTCGGCT 58.970 55.000 0.00 0.00 33.26 5.52
229 230 0.031721 CCGATTAGTACCCTGTCGGC 59.968 60.000 11.86 0.00 40.77 5.54
230 231 0.031721 GCCGATTAGTACCCTGTCGG 59.968 60.000 17.31 17.31 45.51 4.79
231 232 0.031721 GGCCGATTAGTACCCTGTCG 59.968 60.000 0.00 0.00 32.94 4.35
232 233 1.411041 AGGCCGATTAGTACCCTGTC 58.589 55.000 0.00 0.00 0.00 3.51
233 234 2.091444 AGTAGGCCGATTAGTACCCTGT 60.091 50.000 0.00 0.00 0.00 4.00
234 235 2.557490 GAGTAGGCCGATTAGTACCCTG 59.443 54.545 0.00 0.00 0.00 4.45
235 236 2.446285 AGAGTAGGCCGATTAGTACCCT 59.554 50.000 0.00 0.00 0.00 4.34
236 237 2.874014 AGAGTAGGCCGATTAGTACCC 58.126 52.381 0.00 0.00 0.00 3.69
237 238 3.005578 CCAAGAGTAGGCCGATTAGTACC 59.994 52.174 0.00 0.00 0.00 3.34
238 239 3.552478 GCCAAGAGTAGGCCGATTAGTAC 60.552 52.174 0.00 0.00 46.50 2.73
239 240 2.626743 GCCAAGAGTAGGCCGATTAGTA 59.373 50.000 0.00 0.00 46.50 1.82
240 241 1.413077 GCCAAGAGTAGGCCGATTAGT 59.587 52.381 0.00 0.00 46.50 2.24
241 242 2.156343 GCCAAGAGTAGGCCGATTAG 57.844 55.000 0.00 0.00 46.50 1.73
249 250 0.830648 TCCAATCGGCCAAGAGTAGG 59.169 55.000 2.24 0.00 0.00 3.18
250 251 2.280628 GTTCCAATCGGCCAAGAGTAG 58.719 52.381 2.24 0.00 0.00 2.57
251 252 1.065709 GGTTCCAATCGGCCAAGAGTA 60.066 52.381 2.24 0.00 0.00 2.59
252 253 0.322546 GGTTCCAATCGGCCAAGAGT 60.323 55.000 2.24 0.00 0.00 3.24
253 254 0.322456 TGGTTCCAATCGGCCAAGAG 60.322 55.000 2.24 0.00 0.00 2.85
254 255 0.322456 CTGGTTCCAATCGGCCAAGA 60.322 55.000 2.24 0.00 0.00 3.02
255 256 0.609131 ACTGGTTCCAATCGGCCAAG 60.609 55.000 2.24 0.00 0.00 3.61
256 257 0.608035 GACTGGTTCCAATCGGCCAA 60.608 55.000 2.24 0.00 0.00 4.52
257 258 1.002624 GACTGGTTCCAATCGGCCA 60.003 57.895 2.24 0.00 0.00 5.36
258 259 1.002624 TGACTGGTTCCAATCGGCC 60.003 57.895 0.00 0.00 0.00 6.13
259 260 1.648467 GCTGACTGGTTCCAATCGGC 61.648 60.000 16.37 16.37 37.40 5.54
260 261 1.026718 GGCTGACTGGTTCCAATCGG 61.027 60.000 4.94 4.94 0.00 4.18
261 262 1.361668 CGGCTGACTGGTTCCAATCG 61.362 60.000 0.00 0.00 0.00 3.34
262 263 1.648467 GCGGCTGACTGGTTCCAATC 61.648 60.000 0.00 0.00 0.00 2.67
263 264 1.675641 GCGGCTGACTGGTTCCAAT 60.676 57.895 0.00 0.00 0.00 3.16
264 265 2.281484 GCGGCTGACTGGTTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
265 266 4.329545 GGCGGCTGACTGGTTCCA 62.330 66.667 0.00 0.00 0.00 3.53
266 267 4.329545 TGGCGGCTGACTGGTTCC 62.330 66.667 11.43 0.00 0.00 3.62
267 268 2.527951 ATCTGGCGGCTGACTGGTTC 62.528 60.000 20.57 0.00 0.00 3.62
268 269 2.596851 ATCTGGCGGCTGACTGGTT 61.597 57.895 20.57 1.82 0.00 3.67
269 270 3.005539 ATCTGGCGGCTGACTGGT 61.006 61.111 20.57 2.21 0.00 4.00
270 271 2.513204 CATCTGGCGGCTGACTGG 60.513 66.667 20.57 9.73 0.00 4.00
271 272 2.513204 CCATCTGGCGGCTGACTG 60.513 66.667 20.57 17.53 0.00 3.51
281 282 3.685139 AATACATAGTCGGCCATCTGG 57.315 47.619 2.24 0.13 38.53 3.86
282 283 7.672983 AAAATAATACATAGTCGGCCATCTG 57.327 36.000 2.24 0.00 0.00 2.90
363 364 5.928976 ACCCAAGAAAAAGCTGCTATTTTT 58.071 33.333 10.85 10.85 41.32 1.94
364 365 5.305386 AGACCCAAGAAAAAGCTGCTATTTT 59.695 36.000 16.71 16.71 0.00 1.82
365 366 4.835056 AGACCCAAGAAAAAGCTGCTATTT 59.165 37.500 0.90 3.37 0.00 1.40
366 367 4.411013 AGACCCAAGAAAAAGCTGCTATT 58.589 39.130 0.90 0.83 0.00 1.73
367 368 4.039603 AGACCCAAGAAAAAGCTGCTAT 57.960 40.909 0.90 0.00 0.00 2.97
368 369 3.508845 AGACCCAAGAAAAAGCTGCTA 57.491 42.857 0.90 0.00 0.00 3.49
369 370 2.371658 AGACCCAAGAAAAAGCTGCT 57.628 45.000 0.00 0.00 0.00 4.24
370 371 3.057946 CACTAGACCCAAGAAAAAGCTGC 60.058 47.826 0.00 0.00 0.00 5.25
371 372 4.389374 TCACTAGACCCAAGAAAAAGCTG 58.611 43.478 0.00 0.00 0.00 4.24
372 373 4.706842 TCACTAGACCCAAGAAAAAGCT 57.293 40.909 0.00 0.00 0.00 3.74
373 374 5.241728 ACAATCACTAGACCCAAGAAAAAGC 59.758 40.000 0.00 0.00 0.00 3.51
374 375 6.884280 ACAATCACTAGACCCAAGAAAAAG 57.116 37.500 0.00 0.00 0.00 2.27
375 376 7.514721 ACTACAATCACTAGACCCAAGAAAAA 58.485 34.615 0.00 0.00 0.00 1.94
376 377 7.074653 ACTACAATCACTAGACCCAAGAAAA 57.925 36.000 0.00 0.00 0.00 2.29
377 378 6.571731 CGACTACAATCACTAGACCCAAGAAA 60.572 42.308 0.00 0.00 0.00 2.52
378 379 5.105877 CGACTACAATCACTAGACCCAAGAA 60.106 44.000 0.00 0.00 0.00 2.52
379 380 4.398358 CGACTACAATCACTAGACCCAAGA 59.602 45.833 0.00 0.00 0.00 3.02
380 381 4.158025 ACGACTACAATCACTAGACCCAAG 59.842 45.833 0.00 0.00 0.00 3.61
383 384 4.421948 CAACGACTACAATCACTAGACCC 58.578 47.826 0.00 0.00 0.00 4.46
396 397 6.150641 TCCATATATCACCTAGCAACGACTAC 59.849 42.308 0.00 0.00 0.00 2.73
404 405 7.895962 ACAAGTAGATCCATATATCACCTAGCA 59.104 37.037 0.00 0.00 0.00 3.49
435 437 8.038944 ACGCACAAAGATCCTAGAAGTAATAAA 58.961 33.333 0.00 0.00 0.00 1.40
513 516 5.474876 CCTGTTTGTTTGCTTTAGGAGATCT 59.525 40.000 0.00 0.00 0.00 2.75
1164 1605 1.002868 GCAGCAGAGGAAGAAGCCA 60.003 57.895 0.00 0.00 0.00 4.75
1330 1809 1.478043 AAAGGGAAATGGAAGGGGGA 58.522 50.000 0.00 0.00 0.00 4.81
1335 1814 8.642432 AGAAACTAAAGAAAAGGGAAATGGAAG 58.358 33.333 0.00 0.00 0.00 3.46
1338 1817 8.183104 AGAGAAACTAAAGAAAAGGGAAATGG 57.817 34.615 0.00 0.00 0.00 3.16
1340 1819 9.072375 CAGAGAGAAACTAAAGAAAAGGGAAAT 57.928 33.333 0.00 0.00 0.00 2.17
1350 1829 5.772672 AGTGCTCTCAGAGAGAAACTAAAGA 59.227 40.000 28.90 0.19 45.07 2.52
1488 1971 1.660264 CCGCGGTTCAGGCAAAAAC 60.660 57.895 19.50 0.00 0.00 2.43
1489 1972 2.725008 CCGCGGTTCAGGCAAAAA 59.275 55.556 19.50 0.00 0.00 1.94
1529 2012 0.250038 AGCACGCACTCTGACAACAT 60.250 50.000 0.00 0.00 0.00 2.71
1573 2061 1.661112 GCTACGAAGGAGCACACATTC 59.339 52.381 0.00 0.00 39.84 2.67
1578 2066 0.898326 TGGAGCTACGAAGGAGCACA 60.898 55.000 7.04 2.56 42.69 4.57
1586 2074 2.027192 AGCTTCCATTTGGAGCTACGAA 60.027 45.455 16.80 0.00 46.36 3.85
1614 2102 0.035630 CTTGAGGCCCTTGAGTGAGG 60.036 60.000 0.00 0.00 36.52 3.86
1664 2152 2.969443 ATCGAGCAGTTTTCCGTTTG 57.031 45.000 0.00 0.00 0.00 2.93
1672 2160 0.884704 ACGCACCAATCGAGCAGTTT 60.885 50.000 0.00 0.00 0.00 2.66
1682 2170 0.255890 ATAAGGGAGCACGCACCAAT 59.744 50.000 7.80 0.00 0.00 3.16
1690 2178 6.461509 CCATGGTCAAAATAATAAGGGAGCAC 60.462 42.308 2.57 0.00 35.87 4.40
1692 2180 5.509670 GCCATGGTCAAAATAATAAGGGAGC 60.510 44.000 14.67 0.00 0.00 4.70
1693 2181 5.835280 AGCCATGGTCAAAATAATAAGGGAG 59.165 40.000 14.67 0.00 0.00 4.30
1694 2182 5.598005 CAGCCATGGTCAAAATAATAAGGGA 59.402 40.000 14.67 0.00 0.00 4.20
1695 2183 5.739935 GCAGCCATGGTCAAAATAATAAGGG 60.740 44.000 14.67 0.00 0.00 3.95
1696 2184 5.291971 GCAGCCATGGTCAAAATAATAAGG 58.708 41.667 14.67 0.00 0.00 2.69
1697 2185 4.977963 CGCAGCCATGGTCAAAATAATAAG 59.022 41.667 14.67 0.00 0.00 1.73
1721 2211 4.547367 GGACGGCCAGAATCCCCG 62.547 72.222 0.00 3.58 46.97 5.73
1763 2253 9.504708 TTCGGGAGTAAATGACTACATTAAAAA 57.495 29.630 0.00 0.00 44.67 1.94
1764 2254 8.938906 GTTCGGGAGTAAATGACTACATTAAAA 58.061 33.333 0.00 0.00 44.67 1.52
1765 2255 7.276218 CGTTCGGGAGTAAATGACTACATTAAA 59.724 37.037 0.00 0.00 44.67 1.52
1766 2256 6.753279 CGTTCGGGAGTAAATGACTACATTAA 59.247 38.462 0.00 0.00 44.67 1.40
1767 2257 6.267817 CGTTCGGGAGTAAATGACTACATTA 58.732 40.000 0.00 0.00 44.67 1.90
1768 2258 5.107133 CGTTCGGGAGTAAATGACTACATT 58.893 41.667 0.00 0.00 46.99 2.71
1769 2259 4.441079 CCGTTCGGGAGTAAATGACTACAT 60.441 45.833 3.04 0.00 41.43 2.29
1770 2260 3.119388 CCGTTCGGGAGTAAATGACTACA 60.119 47.826 3.04 0.00 41.43 2.74
1801 2291 9.662947 CATGACTCAACATACCATCATACATAT 57.337 33.333 0.00 0.00 0.00 1.78
1802 2292 7.603784 GCATGACTCAACATACCATCATACATA 59.396 37.037 0.00 0.00 0.00 2.29
1803 2293 6.429078 GCATGACTCAACATACCATCATACAT 59.571 38.462 0.00 0.00 0.00 2.29
1804 2294 5.759763 GCATGACTCAACATACCATCATACA 59.240 40.000 0.00 0.00 0.00 2.29
1805 2295 5.759763 TGCATGACTCAACATACCATCATAC 59.240 40.000 0.00 0.00 0.00 2.39
1819 2309 4.377021 ACGAGTTTTACTTGCATGACTCA 58.623 39.130 15.17 0.00 32.76 3.41
1910 2401 9.542462 GACAACTATATTAAGCACCTGATGTTA 57.458 33.333 0.00 0.00 0.00 2.41
1913 2404 7.712639 AGTGACAACTATATTAAGCACCTGATG 59.287 37.037 0.00 0.00 33.79 3.07
1959 2450 9.720769 CAGTAAAAGGATAAGTCTAACCTTGAA 57.279 33.333 0.00 0.00 38.90 2.69
2043 2534 9.423061 GCTTGTTTTGTGGATTAAAACTCATAT 57.577 29.630 12.69 0.00 44.34 1.78
2048 2539 8.421002 AGTATGCTTGTTTTGTGGATTAAAACT 58.579 29.630 12.69 0.00 44.34 2.66
2096 2588 1.818674 GCCGGATGTCACAAGGATTTT 59.181 47.619 5.05 0.00 0.00 1.82
2108 2600 2.534396 TTGGGGAACTGCCGGATGT 61.534 57.895 5.05 0.00 37.63 3.06
2114 2606 1.293179 GCATTGTTGGGGAACTGCC 59.707 57.895 0.00 0.00 0.00 4.85
2162 2654 9.113876 GATAACCAGAAAATTGTTTGTTACTCG 57.886 33.333 0.00 0.00 0.00 4.18
2163 2655 9.113876 CGATAACCAGAAAATTGTTTGTTACTC 57.886 33.333 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.