Multiple sequence alignment - TraesCS3D01G290000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G290000 chr3D 100.000 2962 0 0 2052 5013 400276383 400273422 0.000000e+00 5470.0
1 TraesCS3D01G290000 chr3D 100.000 1709 0 0 1 1709 400278434 400276726 0.000000e+00 3157.0
2 TraesCS3D01G290000 chr3D 88.755 249 25 3 3633 3879 540549252 540549005 8.160000e-78 302.0
3 TraesCS3D01G290000 chr3D 93.590 78 4 1 4 80 27888560 27888483 1.140000e-21 115.0
4 TraesCS3D01G290000 chr3D 89.091 55 6 0 1001 1055 130933092 130933146 9.010000e-08 69.4
5 TraesCS3D01G290000 chr3A 95.723 1590 60 5 2052 3637 519209594 519208009 0.000000e+00 2553.0
6 TraesCS3D01G290000 chr3A 92.112 1217 40 17 383 1552 519210842 519209635 0.000000e+00 1664.0
7 TraesCS3D01G290000 chr3A 93.593 796 26 8 3878 4661 519208010 519207228 0.000000e+00 1164.0
8 TraesCS3D01G290000 chr3A 90.584 308 19 5 78 383 519225883 519225584 2.810000e-107 399.0
9 TraesCS3D01G290000 chr3A 90.421 261 19 2 4662 4922 519205900 519205646 6.220000e-89 339.0
10 TraesCS3D01G290000 chr3A 92.857 98 6 1 4917 5013 519196934 519196837 1.880000e-29 141.0
11 TraesCS3D01G290000 chr3A 89.091 55 6 0 1001 1055 142896670 142896724 9.010000e-08 69.4
12 TraesCS3D01G290000 chr3B 94.036 1593 61 14 2052 3637 525831869 525830304 0.000000e+00 2385.0
13 TraesCS3D01G290000 chr3B 90.468 1154 62 26 3878 5013 525830305 525829182 0.000000e+00 1478.0
14 TraesCS3D01G290000 chr3B 93.356 888 21 13 769 1635 525832951 525832081 0.000000e+00 1279.0
15 TraesCS3D01G290000 chr3B 86.158 708 70 14 78 762 525971077 525970375 0.000000e+00 739.0
16 TraesCS3D01G290000 chr3B 90.909 55 5 0 1001 1055 187352153 187352207 1.940000e-09 75.0
17 TraesCS3D01G290000 chr1A 78.141 581 97 24 2823 3381 527177283 527177855 4.810000e-90 342.0
18 TraesCS3D01G290000 chr1A 88.889 144 15 1 1258 1400 527175253 527175396 5.160000e-40 176.0
19 TraesCS3D01G290000 chr1A 96.875 64 2 0 992 1055 527174608 527174671 1.910000e-19 108.0
20 TraesCS3D01G290000 chr1A 88.406 69 3 5 7 73 14769651 14769716 1.500000e-10 78.7
21 TraesCS3D01G290000 chr1A 95.238 42 2 0 1146 1187 527175126 527175167 3.240000e-07 67.6
22 TraesCS3D01G290000 chr1D 78.007 582 97 25 2823 3381 429698535 429699108 2.240000e-88 337.0
23 TraesCS3D01G290000 chr1D 88.971 136 15 0 1265 1400 429696895 429697030 8.630000e-38 169.0
24 TraesCS3D01G290000 chr1D 90.244 82 5 3 992 1072 429696443 429696522 2.470000e-18 104.0
25 TraesCS3D01G290000 chr1B 77.893 579 99 22 2823 3380 580633847 580634417 2.890000e-87 333.0
26 TraesCS3D01G290000 chr1B 87.500 144 17 1 1258 1400 580632187 580632330 1.120000e-36 165.0
27 TraesCS3D01G290000 chr1B 74.830 294 55 17 903 1187 580631820 580632103 1.140000e-21 115.0
28 TraesCS3D01G290000 chr1B 88.060 67 8 0 7 73 20565739 20565673 4.160000e-11 80.5
29 TraesCS3D01G290000 chr2A 88.980 245 24 3 3636 3879 733542587 733542345 2.930000e-77 300.0
30 TraesCS3D01G290000 chr6A 88.755 249 21 5 3636 3880 134548791 134548546 1.060000e-76 298.0
31 TraesCS3D01G290000 chr4B 88.163 245 27 2 3636 3879 366928664 366928421 1.770000e-74 291.0
32 TraesCS3D01G290000 chr7B 87.805 246 27 3 3636 3879 484625374 484625618 8.210000e-73 285.0
33 TraesCS3D01G290000 chr7B 91.250 80 6 1 1 79 466267718 466267797 1.910000e-19 108.0
34 TraesCS3D01G290000 chr7A 87.109 256 27 5 3636 3886 513541065 513541319 8.210000e-73 285.0
35 TraesCS3D01G290000 chr7A 90.411 73 6 1 3 74 690411602 690411530 1.490000e-15 95.3
36 TraesCS3D01G290000 chr6B 86.992 246 29 3 3636 3879 171967260 171967016 1.780000e-69 274.0
37 TraesCS3D01G290000 chr6B 88.261 230 23 3 3636 3861 447890839 447890610 6.390000e-69 272.0
38 TraesCS3D01G290000 chr6B 93.590 78 5 0 1 78 693039661 693039584 3.170000e-22 117.0
39 TraesCS3D01G290000 chr5A 86.747 249 29 4 3636 3880 136397879 136398127 1.780000e-69 274.0
40 TraesCS3D01G290000 chr4A 92.208 77 5 1 4 79 698116552 698116628 1.910000e-19 108.0
41 TraesCS3D01G290000 chr4A 90.411 73 7 0 1 73 737573678 737573750 4.130000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G290000 chr3D 400273422 400278434 5012 True 4313.500000 5470 100.000000 1 5013 2 chr3D.!!$R3 5012
1 TraesCS3D01G290000 chr3A 519205646 519210842 5196 True 1430.000000 2553 92.962250 383 4922 4 chr3A.!!$R3 4539
2 TraesCS3D01G290000 chr3B 525829182 525832951 3769 True 1714.000000 2385 92.620000 769 5013 3 chr3B.!!$R2 4244
3 TraesCS3D01G290000 chr3B 525970375 525971077 702 True 739.000000 739 86.158000 78 762 1 chr3B.!!$R1 684
4 TraesCS3D01G290000 chr1D 429696443 429699108 2665 False 203.333333 337 85.740667 992 3381 3 chr1D.!!$F1 2389
5 TraesCS3D01G290000 chr1B 580631820 580634417 2597 False 204.333333 333 80.074333 903 3380 3 chr1B.!!$F1 2477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 353 0.107643 TGGTTGTGTCTTCATCGGCA 59.892 50.0 0.00 0.00 0.00 5.69 F
1241 1300 0.038892 TTTGTCGAGGTCGTGTAGCC 60.039 55.0 0.00 0.00 40.80 3.93 F
1247 1306 0.098376 GAGGTCGTGTAGCCGTGTAG 59.902 60.0 0.00 0.00 0.00 2.74 F
1625 3026 0.582005 GACAAGACACGCCACACTTC 59.418 55.0 0.00 0.00 0.00 3.01 F
3159 4638 0.391927 AGCCGCGTGGTAATTAGCAA 60.392 50.0 18.42 1.24 37.67 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1650 1.076332 GCATCGTTACAGGACCACAC 58.924 55.000 0.00 0.0 0.00 3.82 R
2444 3919 3.317406 ACTGGCATATGGGTCACTATGA 58.683 45.455 4.56 0.0 0.00 2.15 R
3041 4518 6.831353 TGAAAAGTTGGATTTGTAGGTGAGAA 59.169 34.615 0.00 0.0 0.00 2.87 R
3601 5118 1.203100 AGCTTTCAGCCACCCTTCATT 60.203 47.619 0.00 0.0 43.77 2.57 R
4801 7676 0.113776 TACCCCTAGGCGACCATAGG 59.886 60.000 2.05 0.0 38.66 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.715265 CCGATATATTTAGCGAGGCAATTAT 57.285 36.000 2.29 0.00 39.53 1.28
25 26 7.788055 CCGATATATTTAGCGAGGCAATTATC 58.212 38.462 2.29 0.00 39.53 1.75
26 27 7.438160 CCGATATATTTAGCGAGGCAATTATCA 59.562 37.037 2.29 0.00 39.53 2.15
27 28 8.817100 CGATATATTTAGCGAGGCAATTATCAA 58.183 33.333 0.00 0.00 39.53 2.57
31 32 5.839262 TTAGCGAGGCAATTATCAATACG 57.161 39.130 0.00 0.00 0.00 3.06
32 33 2.480419 AGCGAGGCAATTATCAATACGC 59.520 45.455 0.00 0.00 43.00 4.42
33 34 2.480419 GCGAGGCAATTATCAATACGCT 59.520 45.455 0.00 0.00 40.28 5.07
34 35 3.678072 GCGAGGCAATTATCAATACGCTA 59.322 43.478 0.00 0.00 40.28 4.26
35 36 4.330074 GCGAGGCAATTATCAATACGCTAT 59.670 41.667 0.00 0.00 40.28 2.97
36 37 5.518847 GCGAGGCAATTATCAATACGCTATA 59.481 40.000 0.00 0.00 40.28 1.31
37 38 6.291849 GCGAGGCAATTATCAATACGCTATAG 60.292 42.308 0.00 0.00 40.28 1.31
38 39 6.752351 CGAGGCAATTATCAATACGCTATAGT 59.248 38.462 0.84 0.00 0.00 2.12
39 40 7.253783 CGAGGCAATTATCAATACGCTATAGTG 60.254 40.741 11.80 11.80 0.00 2.74
40 41 7.386851 AGGCAATTATCAATACGCTATAGTGT 58.613 34.615 21.86 21.86 42.11 3.55
41 42 7.331934 AGGCAATTATCAATACGCTATAGTGTG 59.668 37.037 25.72 11.73 39.38 3.82
42 43 6.955963 GCAATTATCAATACGCTATAGTGTGC 59.044 38.462 25.72 13.97 39.38 4.57
43 44 7.148573 GCAATTATCAATACGCTATAGTGTGCT 60.149 37.037 25.72 12.22 39.38 4.40
44 45 9.353999 CAATTATCAATACGCTATAGTGTGCTA 57.646 33.333 25.72 9.26 39.38 3.49
49 50 7.027760 TCAATACGCTATAGTGTGCTATTAGC 58.972 38.462 25.72 8.80 42.82 3.09
50 51 3.822996 ACGCTATAGTGTGCTATTAGCG 58.177 45.455 18.00 17.92 46.26 4.26
51 52 3.501062 ACGCTATAGTGTGCTATTAGCGA 59.499 43.478 24.14 0.00 46.18 4.93
52 53 3.846896 CGCTATAGTGTGCTATTAGCGAC 59.153 47.826 15.33 9.75 46.18 5.19
53 54 3.846896 GCTATAGTGTGCTATTAGCGACG 59.153 47.826 10.94 0.00 46.26 5.12
54 55 2.115348 TAGTGTGCTATTAGCGACGC 57.885 50.000 13.03 13.03 46.26 5.19
55 56 0.456221 AGTGTGCTATTAGCGACGCT 59.544 50.000 27.45 27.45 46.26 5.07
56 57 1.674441 AGTGTGCTATTAGCGACGCTA 59.326 47.619 25.04 25.04 46.26 4.26
57 58 2.293677 AGTGTGCTATTAGCGACGCTAT 59.706 45.455 28.67 19.98 46.26 2.97
58 59 3.501062 AGTGTGCTATTAGCGACGCTATA 59.499 43.478 28.67 19.32 46.26 1.31
59 60 3.846896 GTGTGCTATTAGCGACGCTATAG 59.153 47.826 28.67 26.76 46.26 1.31
60 61 3.501062 TGTGCTATTAGCGACGCTATAGT 59.499 43.478 28.67 19.42 46.26 2.12
61 62 3.846896 GTGCTATTAGCGACGCTATAGTG 59.153 47.826 28.67 19.03 46.26 2.74
62 63 2.847133 GCTATTAGCGACGCTATAGTGC 59.153 50.000 28.67 23.61 41.01 4.40
63 64 3.669824 GCTATTAGCGACGCTATAGTGCA 60.670 47.826 28.67 14.20 41.01 4.57
64 65 2.115348 TTAGCGACGCTATAGTGCAC 57.885 50.000 28.67 9.40 41.01 4.57
65 66 1.306148 TAGCGACGCTATAGTGCACT 58.694 50.000 25.04 25.12 40.44 4.40
66 67 1.306148 AGCGACGCTATAGTGCACTA 58.694 50.000 27.91 27.91 36.99 2.74
67 68 1.880675 AGCGACGCTATAGTGCACTAT 59.119 47.619 35.05 35.05 41.65 2.12
68 69 2.293677 AGCGACGCTATAGTGCACTATT 59.706 45.455 37.12 23.23 39.66 1.73
69 70 3.050619 GCGACGCTATAGTGCACTATTT 58.949 45.455 37.12 22.07 39.66 1.40
70 71 3.489785 GCGACGCTATAGTGCACTATTTT 59.510 43.478 37.12 21.39 39.66 1.82
71 72 4.025979 GCGACGCTATAGTGCACTATTTTT 60.026 41.667 37.12 22.09 39.66 1.94
111 112 1.272536 ACCCTCCAGCTTCTTCTACGA 60.273 52.381 0.00 0.00 0.00 3.43
112 113 2.035632 CCCTCCAGCTTCTTCTACGAT 58.964 52.381 0.00 0.00 0.00 3.73
129 130 0.598680 GATTCCATCGGGCTGAGACG 60.599 60.000 1.04 0.00 0.00 4.18
130 131 2.650813 ATTCCATCGGGCTGAGACGC 62.651 60.000 1.04 0.00 0.00 5.19
132 133 2.490148 CCATCGGGCTGAGACGCTA 61.490 63.158 1.04 0.00 0.00 4.26
138 139 0.596082 GGGCTGAGACGCTAGATCTC 59.404 60.000 14.56 14.56 42.57 2.75
161 164 1.134670 GGCGAGATCAGCTAAACAGGT 60.135 52.381 11.99 0.00 34.52 4.00
176 179 7.038231 AGCTAAACAGGTAGGTCTTAATTGTCT 60.038 37.037 0.00 0.00 0.00 3.41
184 187 4.246458 AGGTCTTAATTGTCTGTCGCTTC 58.754 43.478 0.00 0.00 0.00 3.86
208 211 0.250553 TTTCGAGAAATGGTGGCGGT 60.251 50.000 0.00 0.00 0.00 5.68
216 219 3.565961 ATGGTGGCGGTGATGCACA 62.566 57.895 0.00 0.00 35.86 4.57
221 224 1.093972 TGGCGGTGATGCACAATAAG 58.906 50.000 0.00 0.00 35.86 1.73
232 235 2.237143 TGCACAATAAGGTCTCCTCCAG 59.763 50.000 0.00 0.00 30.89 3.86
251 254 0.537653 GCTTCTTCTCCGGCTTAGGT 59.462 55.000 0.00 0.00 0.00 3.08
277 284 1.338337 ACCGTTGGATCTAGCGATGAG 59.662 52.381 16.63 2.63 0.00 2.90
279 286 2.230025 CCGTTGGATCTAGCGATGAGAT 59.770 50.000 16.63 0.00 36.33 2.75
295 302 6.735968 GCGATGAGATTGAGTGGACATAGTTA 60.736 42.308 0.00 0.00 0.00 2.24
306 313 3.029570 GGACATAGTTACCTTCCCGTCT 58.970 50.000 0.00 0.00 0.00 4.18
346 353 0.107643 TGGTTGTGTCTTCATCGGCA 59.892 50.000 0.00 0.00 0.00 5.69
379 388 4.572909 TCTCCATCATATGCCGATTTCAG 58.427 43.478 0.00 0.00 0.00 3.02
395 404 5.004821 CGATTTCAGTATTCTGTTGACTCGG 59.995 44.000 0.00 0.00 41.91 4.63
460 469 1.072159 GATCCGCTGATCCTTGGGG 59.928 63.158 6.85 7.07 41.37 4.96
476 485 3.249986 TGGGGATTAACTTAACCGACG 57.750 47.619 0.00 0.00 0.00 5.12
485 494 8.058328 GGATTAACTTAACCGACGCTTTATAAC 58.942 37.037 0.00 0.00 0.00 1.89
525 534 1.563924 TGCCCGTGTGGATACTACTT 58.436 50.000 0.00 0.00 37.49 2.24
555 564 2.372690 CGACAACGCGGAACTCCAG 61.373 63.158 12.47 0.00 35.14 3.86
570 579 3.043713 CAGCAGCGGCAACTTCGA 61.044 61.111 12.44 0.00 44.61 3.71
914 945 2.810164 AGCTTAGGTTTCGTCTCTCCT 58.190 47.619 0.00 0.00 0.00 3.69
1121 1166 1.005630 AGTGTTCGCTCTGCTGACC 60.006 57.895 0.00 0.00 0.00 4.02
1215 1274 1.876714 CGCCGTGGATTACCTGTCG 60.877 63.158 0.00 0.00 37.04 4.35
1240 1299 1.774639 TTTTGTCGAGGTCGTGTAGC 58.225 50.000 0.00 0.00 40.80 3.58
1241 1300 0.038892 TTTGTCGAGGTCGTGTAGCC 60.039 55.000 0.00 0.00 40.80 3.93
1242 1301 2.099831 GTCGAGGTCGTGTAGCCG 59.900 66.667 0.00 0.00 40.80 5.52
1243 1302 2.359107 TCGAGGTCGTGTAGCCGT 60.359 61.111 0.00 0.00 40.80 5.68
1244 1303 2.202440 CGAGGTCGTGTAGCCGTG 60.202 66.667 0.00 0.00 34.11 4.94
1245 1304 2.960170 GAGGTCGTGTAGCCGTGT 59.040 61.111 0.00 0.00 0.00 4.49
1246 1305 1.638388 CGAGGTCGTGTAGCCGTGTA 61.638 60.000 0.00 0.00 34.11 2.90
1247 1306 0.098376 GAGGTCGTGTAGCCGTGTAG 59.902 60.000 0.00 0.00 0.00 2.74
1248 1307 1.138247 GGTCGTGTAGCCGTGTAGG 59.862 63.158 0.00 0.00 44.97 3.18
1266 1489 5.522097 GTGTAGGGTTGGATTTTGTTTTGTG 59.478 40.000 0.00 0.00 0.00 3.33
1427 1650 4.219288 ACCTTCTTTTAGCAATTCAGCCTG 59.781 41.667 0.00 0.00 34.23 4.85
1565 2966 4.199310 TGTTATGCTGGAGTGCTTATTCC 58.801 43.478 0.00 0.00 0.00 3.01
1569 2970 2.019984 GCTGGAGTGCTTATTCCCTTG 58.980 52.381 0.00 0.00 32.29 3.61
1581 2982 6.954684 TGCTTATTCCCTTGTTATGGGTAAAA 59.045 34.615 0.00 0.00 44.84 1.52
1582 2983 7.123547 TGCTTATTCCCTTGTTATGGGTAAAAG 59.876 37.037 0.00 0.00 44.84 2.27
1583 2984 7.123697 GCTTATTCCCTTGTTATGGGTAAAAGT 59.876 37.037 0.00 0.00 44.84 2.66
1584 2985 8.959676 TTATTCCCTTGTTATGGGTAAAAGTT 57.040 30.769 0.00 0.00 44.84 2.66
1608 3009 3.600388 CTGGAGTGTTGTATTCCTGGAC 58.400 50.000 0.00 0.00 36.22 4.02
1617 3018 2.000447 GTATTCCTGGACAAGACACGC 59.000 52.381 0.00 0.00 0.00 5.34
1625 3026 0.582005 GACAAGACACGCCACACTTC 59.418 55.000 0.00 0.00 0.00 3.01
1644 3103 6.970613 ACACTTCGGTCATTTTTACTTTGAAC 59.029 34.615 0.00 0.00 0.00 3.18
1648 3107 7.323049 TCGGTCATTTTTACTTTGAACAAGA 57.677 32.000 0.00 0.00 0.00 3.02
1670 3129 3.456277 AGCCCCACTTTACTCTTATCTGG 59.544 47.826 0.00 0.00 0.00 3.86
1685 3144 8.386264 ACTCTTATCTGGGGGTAAATTGATATG 58.614 37.037 0.00 0.00 0.00 1.78
2100 3559 4.207955 AGAGTCAGTGTTGTCAGTACAGA 58.792 43.478 0.00 0.00 36.83 3.41
2301 3763 3.418684 TCCCTTTCCTCTTAACACTGC 57.581 47.619 0.00 0.00 0.00 4.40
2335 3797 2.037847 ATTGTTGGGAGCTGGGGC 59.962 61.111 0.00 0.00 39.06 5.80
2346 3808 1.142097 GCTGGGGCGTCTCTACTTC 59.858 63.158 0.00 0.00 0.00 3.01
2441 3916 8.246180 TGATTCAGAAAATTCTTCAATGCCTAC 58.754 33.333 0.00 0.00 34.74 3.18
2442 3917 7.765695 TTCAGAAAATTCTTCAATGCCTACT 57.234 32.000 0.00 0.00 34.74 2.57
2444 3919 9.466497 TTCAGAAAATTCTTCAATGCCTACTAT 57.534 29.630 0.00 0.00 34.74 2.12
2579 4055 7.223387 GTGACTCATATGCCAATTTCCATTTTC 59.777 37.037 0.00 0.00 0.00 2.29
2685 4161 3.674682 CGTGTAGCCCTTCTTTCTCTCAG 60.675 52.174 0.00 0.00 0.00 3.35
2695 4171 6.370166 CCCTTCTTTCTCTCAGTCAAATACAC 59.630 42.308 0.00 0.00 0.00 2.90
2696 4172 6.931281 CCTTCTTTCTCTCAGTCAAATACACA 59.069 38.462 0.00 0.00 0.00 3.72
3019 4496 7.412853 AGATTTCTTGTTGCTTATAATGAGCG 58.587 34.615 0.00 0.00 43.02 5.03
3041 4518 5.065218 GCGACACAGTATGATTGGATTTCTT 59.935 40.000 0.00 0.00 39.69 2.52
3159 4638 0.391927 AGCCGCGTGGTAATTAGCAA 60.392 50.000 18.42 1.24 37.67 3.91
3321 4837 7.361286 GCGAAAGAAGGAACAAATGTAGAAGAT 60.361 37.037 0.00 0.00 0.00 2.40
3383 4899 3.686726 CCAGAAGAAGAATTGTAAGCGCT 59.313 43.478 2.64 2.64 0.00 5.92
3415 4931 5.062809 GCTTGTTCAGTACTTGAGTATCTGC 59.937 44.000 0.00 0.00 37.07 4.26
3489 5005 3.754955 GCATTGATGCGATCATATGTGG 58.245 45.455 1.90 0.00 44.67 4.17
3601 5118 5.221422 GGATGTGAGGGATTGTTTTGTTTCA 60.221 40.000 0.00 0.00 0.00 2.69
3637 5154 7.209595 CTGAAAGCTTCAAGTTGTGTTTTAC 57.790 36.000 0.00 4.14 39.58 2.01
3638 5155 6.919721 TGAAAGCTTCAAGTTGTGTTTTACT 58.080 32.000 0.00 0.00 36.59 2.24
3639 5156 7.027161 TGAAAGCTTCAAGTTGTGTTTTACTC 58.973 34.615 0.00 0.00 36.59 2.59
3640 5157 5.500645 AGCTTCAAGTTGTGTTTTACTCC 57.499 39.130 2.11 0.00 0.00 3.85
3641 5158 4.338400 AGCTTCAAGTTGTGTTTTACTCCC 59.662 41.667 2.11 0.00 0.00 4.30
3642 5159 4.338400 GCTTCAAGTTGTGTTTTACTCCCT 59.662 41.667 2.11 0.00 0.00 4.20
3643 5160 5.505819 GCTTCAAGTTGTGTTTTACTCCCTC 60.506 44.000 2.11 0.00 0.00 4.30
3644 5161 4.457466 TCAAGTTGTGTTTTACTCCCTCC 58.543 43.478 2.11 0.00 0.00 4.30
3645 5162 3.121738 AGTTGTGTTTTACTCCCTCCG 57.878 47.619 0.00 0.00 0.00 4.63
3646 5163 2.436911 AGTTGTGTTTTACTCCCTCCGT 59.563 45.455 0.00 0.00 0.00 4.69
3647 5164 3.118149 AGTTGTGTTTTACTCCCTCCGTT 60.118 43.478 0.00 0.00 0.00 4.44
3648 5165 3.116079 TGTGTTTTACTCCCTCCGTTC 57.884 47.619 0.00 0.00 0.00 3.95
3649 5166 2.224354 TGTGTTTTACTCCCTCCGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
3650 5167 2.038164 GTGTTTTACTCCCTCCGTTCCT 59.962 50.000 0.00 0.00 0.00 3.36
3651 5168 3.259123 GTGTTTTACTCCCTCCGTTCCTA 59.741 47.826 0.00 0.00 0.00 2.94
3652 5169 3.903090 TGTTTTACTCCCTCCGTTCCTAA 59.097 43.478 0.00 0.00 0.00 2.69
3653 5170 4.347583 TGTTTTACTCCCTCCGTTCCTAAA 59.652 41.667 0.00 0.00 0.00 1.85
3654 5171 5.013391 TGTTTTACTCCCTCCGTTCCTAAAT 59.987 40.000 0.00 0.00 0.00 1.40
3655 5172 6.213195 TGTTTTACTCCCTCCGTTCCTAAATA 59.787 38.462 0.00 0.00 0.00 1.40
3656 5173 7.092757 TGTTTTACTCCCTCCGTTCCTAAATAT 60.093 37.037 0.00 0.00 0.00 1.28
3657 5174 8.424133 GTTTTACTCCCTCCGTTCCTAAATATA 58.576 37.037 0.00 0.00 0.00 0.86
3658 5175 8.551682 TTTACTCCCTCCGTTCCTAAATATAA 57.448 34.615 0.00 0.00 0.00 0.98
3659 5176 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3660 5177 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3661 5178 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3662 5179 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3663 5180 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3664 5181 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3665 5182 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3666 5183 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3683 5200 9.720769 AAGTCTTTTTAGAGATTTCAATACGGA 57.279 29.630 0.00 0.00 0.00 4.69
3684 5201 9.152595 AGTCTTTTTAGAGATTTCAATACGGAC 57.847 33.333 0.00 0.00 0.00 4.79
3685 5202 9.152595 GTCTTTTTAGAGATTTCAATACGGACT 57.847 33.333 0.00 0.00 0.00 3.85
3696 5213 9.291664 GATTTCAATACGGACTATATACAGAGC 57.708 37.037 0.00 0.00 0.00 4.09
3697 5214 7.754851 TTCAATACGGACTATATACAGAGCA 57.245 36.000 0.00 0.00 0.00 4.26
3698 5215 7.754851 TCAATACGGACTATATACAGAGCAA 57.245 36.000 0.00 0.00 0.00 3.91
3699 5216 8.173542 TCAATACGGACTATATACAGAGCAAA 57.826 34.615 0.00 0.00 0.00 3.68
3700 5217 8.635328 TCAATACGGACTATATACAGAGCAAAA 58.365 33.333 0.00 0.00 0.00 2.44
3701 5218 9.424319 CAATACGGACTATATACAGAGCAAAAT 57.576 33.333 0.00 0.00 0.00 1.82
3702 5219 8.988064 ATACGGACTATATACAGAGCAAAATG 57.012 34.615 0.00 0.00 0.00 2.32
3703 5220 7.050970 ACGGACTATATACAGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
3704 5221 7.148641 ACGGACTATATACAGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
3705 5222 7.148641 CGGACTATATACAGAGCAAAATGAGT 58.851 38.462 0.00 0.00 0.00 3.41
3706 5223 7.115520 CGGACTATATACAGAGCAAAATGAGTG 59.884 40.741 0.00 0.00 0.00 3.51
3707 5224 8.144478 GGACTATATACAGAGCAAAATGAGTGA 58.856 37.037 0.00 0.00 0.00 3.41
3708 5225 9.534565 GACTATATACAGAGCAAAATGAGTGAA 57.465 33.333 0.00 0.00 0.00 3.18
3713 5230 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
3714 5231 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
3715 5232 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
3760 5277 9.832445 ACATCCGTATGTAGTTCTTATTGAAAT 57.168 29.630 0.00 0.00 44.66 2.17
3763 5280 9.745880 TCCGTATGTAGTTCTTATTGAAATCTC 57.254 33.333 0.00 0.00 36.30 2.75
3764 5281 9.751542 CCGTATGTAGTTCTTATTGAAATCTCT 57.248 33.333 0.00 0.00 36.30 3.10
3781 5298 9.490379 TGAAATCTCTAAAAAGACTTGTACTCC 57.510 33.333 0.00 0.00 0.00 3.85
3782 5299 9.713713 GAAATCTCTAAAAAGACTTGTACTCCT 57.286 33.333 0.00 0.00 0.00 3.69
3785 5302 8.888579 TCTCTAAAAAGACTTGTACTCCTTTG 57.111 34.615 0.00 0.00 0.00 2.77
3786 5303 8.483758 TCTCTAAAAAGACTTGTACTCCTTTGT 58.516 33.333 0.00 0.00 0.00 2.83
3787 5304 9.760077 CTCTAAAAAGACTTGTACTCCTTTGTA 57.240 33.333 0.00 0.00 0.00 2.41
3791 5308 8.803397 AAAAGACTTGTACTCCTTTGTAAACT 57.197 30.769 0.00 0.00 0.00 2.66
3792 5309 9.895138 AAAAGACTTGTACTCCTTTGTAAACTA 57.105 29.630 0.00 0.00 0.00 2.24
3793 5310 9.895138 AAAGACTTGTACTCCTTTGTAAACTAA 57.105 29.630 0.00 0.00 0.00 2.24
3803 5320 9.530633 ACTCCTTTGTAAACTAATATAAGAGCG 57.469 33.333 0.00 0.00 0.00 5.03
3804 5321 9.530633 CTCCTTTGTAAACTAATATAAGAGCGT 57.469 33.333 0.00 0.00 0.00 5.07
3805 5322 9.880157 TCCTTTGTAAACTAATATAAGAGCGTT 57.120 29.630 0.00 0.00 0.00 4.84
3821 5338 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3822 5339 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3823 5340 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
3824 5341 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
3825 5342 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
3826 5343 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
3827 5344 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
3833 5350 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
3834 5351 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
3835 5352 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
3836 5353 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
3837 5354 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
3851 5368 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3852 5369 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3853 5370 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3854 5371 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3855 5372 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3856 5373 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3857 5374 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3858 5375 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3859 5376 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3860 5377 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3861 5378 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3862 5379 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
3864 5381 7.579761 ATTAGTTTACGGAGGGAGTACTTAG 57.420 40.000 0.00 0.00 0.00 2.18
3865 5382 4.276642 AGTTTACGGAGGGAGTACTTAGG 58.723 47.826 0.00 0.00 0.00 2.69
3866 5383 4.018050 AGTTTACGGAGGGAGTACTTAGGA 60.018 45.833 0.00 0.00 0.00 2.94
3867 5384 4.591321 TTACGGAGGGAGTACTTAGGAA 57.409 45.455 0.00 0.00 0.00 3.36
3868 5385 2.732763 ACGGAGGGAGTACTTAGGAAC 58.267 52.381 0.00 0.00 0.00 3.62
3869 5386 1.674962 CGGAGGGAGTACTTAGGAACG 59.325 57.143 0.00 0.00 0.00 3.95
3870 5387 2.030371 GGAGGGAGTACTTAGGAACGG 58.970 57.143 0.00 0.00 0.00 4.44
3871 5388 2.357569 GGAGGGAGTACTTAGGAACGGA 60.358 54.545 0.00 0.00 0.00 4.69
3872 5389 2.950975 GAGGGAGTACTTAGGAACGGAG 59.049 54.545 0.00 0.00 0.00 4.63
3873 5390 2.030371 GGGAGTACTTAGGAACGGAGG 58.970 57.143 0.00 0.00 0.00 4.30
3874 5391 2.357569 GGGAGTACTTAGGAACGGAGGA 60.358 54.545 0.00 0.00 0.00 3.71
3875 5392 3.359950 GGAGTACTTAGGAACGGAGGAA 58.640 50.000 0.00 0.00 0.00 3.36
3876 5393 3.380954 GGAGTACTTAGGAACGGAGGAAG 59.619 52.174 0.00 0.00 0.00 3.46
3877 5394 4.015764 GAGTACTTAGGAACGGAGGAAGT 58.984 47.826 0.00 0.00 34.78 3.01
3878 5395 5.184892 AGTACTTAGGAACGGAGGAAGTA 57.815 43.478 0.00 0.00 32.75 2.24
3891 5408 4.444720 CGGAGGAAGTATTTCGTTAGCATC 59.555 45.833 0.00 0.00 33.98 3.91
4103 5627 8.783093 TCTGTATTTCATTTGTTACTTGACCAG 58.217 33.333 0.00 0.00 0.00 4.00
4210 5734 4.454504 ACGGCGGAATGAATAATATTGTCC 59.545 41.667 13.24 0.00 0.00 4.02
4346 5879 8.697067 CAAGTTCAGACTGCAAATTTTATCTTG 58.303 33.333 0.00 0.00 35.91 3.02
4392 5925 1.039068 AGGCATCTCAGGATCTGTCG 58.961 55.000 0.00 0.00 32.61 4.35
4393 5926 0.749649 GGCATCTCAGGATCTGTCGT 59.250 55.000 0.00 0.00 32.61 4.34
4394 5927 1.269517 GGCATCTCAGGATCTGTCGTC 60.270 57.143 0.00 0.00 32.61 4.20
4396 5929 2.797792 GCATCTCAGGATCTGTCGTCAC 60.798 54.545 0.00 0.00 32.61 3.67
4397 5930 2.498644 TCTCAGGATCTGTCGTCACT 57.501 50.000 0.00 0.00 32.61 3.41
4400 5933 4.130857 TCTCAGGATCTGTCGTCACTATC 58.869 47.826 0.00 0.00 32.61 2.08
4401 5934 3.879892 CTCAGGATCTGTCGTCACTATCA 59.120 47.826 0.00 0.00 32.61 2.15
4409 5942 2.167693 TGTCGTCACTATCATTCCCACC 59.832 50.000 0.00 0.00 0.00 4.61
4448 5981 6.666113 AGAAACCCCAGTGAAGTAAAAGAAAA 59.334 34.615 0.00 0.00 0.00 2.29
4491 6027 2.156310 GCTCCGCTTTTCTGCAATTTTG 59.844 45.455 0.00 0.00 0.00 2.44
4639 6186 1.364269 TAGGAATTTGGGGGTGACGT 58.636 50.000 0.00 0.00 0.00 4.34
4754 7629 2.618709 CAGGGTCTTTTCTGCTCGTTTT 59.381 45.455 0.00 0.00 0.00 2.43
4755 7630 2.618709 AGGGTCTTTTCTGCTCGTTTTG 59.381 45.455 0.00 0.00 0.00 2.44
4761 7636 2.163818 TTCTGCTCGTTTTGACCGAT 57.836 45.000 0.00 0.00 33.27 4.18
4829 7704 1.186267 GCCTAGGGGTAGTCCGATGG 61.186 65.000 11.72 0.00 36.01 3.51
4855 7730 0.796312 CGACCTTTGTATGCGTGCTT 59.204 50.000 0.00 0.00 0.00 3.91
4878 7753 3.873952 GTGCCACAGAATCATAGGAAGTC 59.126 47.826 0.00 0.00 0.00 3.01
4891 7766 0.389757 GGAAGTCGGTGGGATAGAGC 59.610 60.000 0.00 0.00 0.00 4.09
4926 7801 1.006102 GGATGGCCGGATGTAGACG 60.006 63.158 5.05 0.00 0.00 4.18
4930 7805 1.252215 TGGCCGGATGTAGACGACAA 61.252 55.000 5.05 0.00 42.78 3.18
4934 7809 0.179119 CGGATGTAGACGACAACCCC 60.179 60.000 8.99 3.16 45.97 4.95
4940 7815 1.822990 GTAGACGACAACCCCTGATGA 59.177 52.381 0.00 0.00 0.00 2.92
4960 7835 7.040494 TGATGAAGACTAGCTCTTTTGATCTG 58.960 38.462 0.00 0.00 39.53 2.90
4965 7840 1.446907 AGCTCTTTTGATCTGCGGTG 58.553 50.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.438160 TGATAATTGCCTCGCTAAATATATCGG 59.562 37.037 0.00 0.00 0.00 4.18
1 2 8.352752 TGATAATTGCCTCGCTAAATATATCG 57.647 34.615 0.00 0.00 0.00 2.92
5 6 8.604035 CGTATTGATAATTGCCTCGCTAAATAT 58.396 33.333 0.00 0.00 0.00 1.28
6 7 7.412563 GCGTATTGATAATTGCCTCGCTAAATA 60.413 37.037 0.00 0.00 38.46 1.40
7 8 6.620733 GCGTATTGATAATTGCCTCGCTAAAT 60.621 38.462 0.00 0.00 38.46 1.40
8 9 5.333798 GCGTATTGATAATTGCCTCGCTAAA 60.334 40.000 0.00 0.00 38.46 1.85
9 10 4.151689 GCGTATTGATAATTGCCTCGCTAA 59.848 41.667 0.00 0.00 38.46 3.09
10 11 3.678072 GCGTATTGATAATTGCCTCGCTA 59.322 43.478 0.00 0.00 38.46 4.26
11 12 2.480419 GCGTATTGATAATTGCCTCGCT 59.520 45.455 0.00 0.00 38.46 4.93
12 13 2.480419 AGCGTATTGATAATTGCCTCGC 59.520 45.455 0.00 0.00 41.11 5.03
13 14 6.752351 ACTATAGCGTATTGATAATTGCCTCG 59.248 38.462 0.00 0.00 0.00 4.63
14 15 7.545965 ACACTATAGCGTATTGATAATTGCCTC 59.454 37.037 0.00 0.00 0.00 4.70
15 16 7.331934 CACACTATAGCGTATTGATAATTGCCT 59.668 37.037 0.00 0.00 0.00 4.75
16 17 7.456253 CACACTATAGCGTATTGATAATTGCC 58.544 38.462 0.00 0.00 0.00 4.52
17 18 6.955963 GCACACTATAGCGTATTGATAATTGC 59.044 38.462 0.00 0.00 0.00 3.56
18 19 8.244494 AGCACACTATAGCGTATTGATAATTG 57.756 34.615 0.00 0.00 35.48 2.32
23 24 7.702772 GCTAATAGCACACTATAGCGTATTGAT 59.297 37.037 7.49 0.00 41.89 2.57
24 25 7.027760 GCTAATAGCACACTATAGCGTATTGA 58.972 38.462 7.49 0.00 41.89 2.57
25 26 6.021390 CGCTAATAGCACACTATAGCGTATTG 60.021 42.308 13.15 0.00 43.92 1.90
26 27 6.028368 CGCTAATAGCACACTATAGCGTATT 58.972 40.000 13.15 0.00 43.92 1.89
27 28 5.353400 TCGCTAATAGCACACTATAGCGTAT 59.647 40.000 20.51 0.00 45.94 3.06
28 29 4.692155 TCGCTAATAGCACACTATAGCGTA 59.308 41.667 20.51 8.69 45.94 4.42
29 30 3.501062 TCGCTAATAGCACACTATAGCGT 59.499 43.478 20.51 0.00 45.94 5.07
30 31 3.846896 GTCGCTAATAGCACACTATAGCG 59.153 47.826 16.73 16.73 46.43 4.26
31 32 3.846896 CGTCGCTAATAGCACACTATAGC 59.153 47.826 13.15 0.00 42.58 2.97
32 33 3.846896 GCGTCGCTAATAGCACACTATAG 59.153 47.826 10.68 0.00 42.58 1.31
33 34 3.501062 AGCGTCGCTAATAGCACACTATA 59.499 43.478 20.25 0.00 42.58 1.31
34 35 2.293677 AGCGTCGCTAATAGCACACTAT 59.706 45.455 20.25 0.00 42.58 2.12
35 36 1.674441 AGCGTCGCTAATAGCACACTA 59.326 47.619 20.25 0.00 42.58 2.74
36 37 0.456221 AGCGTCGCTAATAGCACACT 59.544 50.000 20.25 6.36 42.58 3.55
37 38 2.115348 TAGCGTCGCTAATAGCACAC 57.885 50.000 24.13 7.13 42.58 3.82
38 39 3.501062 ACTATAGCGTCGCTAATAGCACA 59.499 43.478 29.13 7.80 44.62 4.57
39 40 3.846896 CACTATAGCGTCGCTAATAGCAC 59.153 47.826 29.13 8.59 44.62 4.40
40 41 3.669824 GCACTATAGCGTCGCTAATAGCA 60.670 47.826 29.13 9.37 44.62 3.49
41 42 2.847133 GCACTATAGCGTCGCTAATAGC 59.153 50.000 29.13 24.04 44.62 2.97
42 43 3.846896 GTGCACTATAGCGTCGCTAATAG 59.153 47.826 29.13 26.90 44.62 1.73
43 44 3.501062 AGTGCACTATAGCGTCGCTAATA 59.499 43.478 29.13 19.32 44.62 0.98
44 45 2.293677 AGTGCACTATAGCGTCGCTAAT 59.706 45.455 29.13 19.24 44.62 1.73
45 46 1.674441 AGTGCACTATAGCGTCGCTAA 59.326 47.619 29.13 17.28 44.62 3.09
46 47 1.306148 AGTGCACTATAGCGTCGCTA 58.694 50.000 27.81 27.81 45.55 4.26
47 48 1.306148 TAGTGCACTATAGCGTCGCT 58.694 50.000 25.08 25.08 43.41 4.93
48 49 2.333389 ATAGTGCACTATAGCGTCGC 57.667 50.000 33.00 9.80 37.40 5.19
49 50 5.637104 AAAAATAGTGCACTATAGCGTCG 57.363 39.130 33.81 0.00 38.15 5.12
68 69 5.017490 TCCATTATTAAGCCCACCGAAAAA 58.983 37.500 0.00 0.00 0.00 1.94
69 70 4.399934 GTCCATTATTAAGCCCACCGAAAA 59.600 41.667 0.00 0.00 0.00 2.29
70 71 3.949113 GTCCATTATTAAGCCCACCGAAA 59.051 43.478 0.00 0.00 0.00 3.46
71 72 3.547746 GTCCATTATTAAGCCCACCGAA 58.452 45.455 0.00 0.00 0.00 4.30
72 73 2.158726 GGTCCATTATTAAGCCCACCGA 60.159 50.000 0.00 0.00 0.00 4.69
73 74 2.227194 GGTCCATTATTAAGCCCACCG 58.773 52.381 0.00 0.00 0.00 4.94
74 75 2.177016 AGGGTCCATTATTAAGCCCACC 59.823 50.000 0.00 0.00 38.56 4.61
75 76 3.487372 GAGGGTCCATTATTAAGCCCAC 58.513 50.000 0.00 0.00 38.56 4.61
76 77 2.445525 GGAGGGTCCATTATTAAGCCCA 59.554 50.000 0.00 0.00 38.56 5.36
111 112 1.443407 CGTCTCAGCCCGATGGAAT 59.557 57.895 0.00 0.00 0.00 3.01
112 113 2.892640 CGTCTCAGCCCGATGGAA 59.107 61.111 0.00 0.00 0.00 3.53
119 120 0.596082 GAGATCTAGCGTCTCAGCCC 59.404 60.000 15.85 0.00 41.35 5.19
138 139 2.543012 CTGTTTAGCTGATCTCGCCATG 59.457 50.000 0.00 0.00 0.00 3.66
139 140 2.484417 CCTGTTTAGCTGATCTCGCCAT 60.484 50.000 0.00 0.00 0.00 4.40
149 150 6.879458 ACAATTAAGACCTACCTGTTTAGCTG 59.121 38.462 0.00 0.00 0.00 4.24
161 164 5.401531 AAGCGACAGACAATTAAGACCTA 57.598 39.130 0.00 0.00 0.00 3.08
176 179 2.736995 CGAAAGGCCGAAGCGACA 60.737 61.111 0.00 0.00 41.24 4.35
184 187 0.447801 CACCATTTCTCGAAAGGCCG 59.552 55.000 0.00 0.00 33.32 6.13
208 211 3.118261 GGAGGAGACCTTATTGTGCATCA 60.118 47.826 0.00 0.00 31.76 3.07
216 219 3.730269 AGAAGCTGGAGGAGACCTTATT 58.270 45.455 0.00 0.00 31.76 1.40
221 224 1.480545 GAGAAGAAGCTGGAGGAGACC 59.519 57.143 0.00 0.00 0.00 3.85
232 235 0.537653 ACCTAAGCCGGAGAAGAAGC 59.462 55.000 5.05 0.00 0.00 3.86
251 254 1.405526 GCTAGATCCAACGGTGCAAGA 60.406 52.381 0.00 0.00 0.00 3.02
295 302 1.553704 GTCAACCATAGACGGGAAGGT 59.446 52.381 0.00 0.00 0.00 3.50
306 313 1.271379 ACTCTCGTTGCGTCAACCATA 59.729 47.619 14.31 3.37 40.82 2.74
321 328 3.430218 CGATGAAGACACAACCAACTCTC 59.570 47.826 0.00 0.00 0.00 3.20
346 353 3.928005 ATGATGGAGAAGCATCACTGT 57.072 42.857 0.00 0.00 40.16 3.55
367 374 5.065218 GTCAACAGAATACTGAAATCGGCAT 59.935 40.000 0.00 0.00 46.03 4.40
379 388 4.174762 GTCTTCCCGAGTCAACAGAATAC 58.825 47.826 0.00 0.00 0.00 1.89
395 404 2.237143 TGATCACACCTGGATGTCTTCC 59.763 50.000 0.00 0.00 45.69 3.46
460 469 8.594687 TGTTATAAAGCGTCGGTTAAGTTAATC 58.405 33.333 10.51 0.00 0.00 1.75
476 485 3.425858 GTCGCCGATCTCTGTTATAAAGC 59.574 47.826 0.00 0.00 0.00 3.51
485 494 0.248825 CCAGAAGTCGCCGATCTCTG 60.249 60.000 16.94 16.94 0.00 3.35
555 564 3.345808 TGTCGAAGTTGCCGCTGC 61.346 61.111 0.00 0.00 38.26 5.25
570 579 0.167908 CGCGCATGTTAATGGTGTGT 59.832 50.000 8.75 0.00 34.09 3.72
747 778 3.406764 AGCAGTTTTGGAGTCTGATGAC 58.593 45.455 0.00 0.00 43.22 3.06
766 797 0.462225 GGAAGCTTTCCGGGAGTAGC 60.462 60.000 19.75 19.75 40.59 3.58
1079 1116 4.280929 GGAAAGAGGCAAAAGCCTAAAAGA 59.719 41.667 9.30 0.00 40.79 2.52
1121 1166 3.665323 CGGTGAATCAGCAGAAAAAGTCG 60.665 47.826 13.13 0.00 0.00 4.18
1215 1274 1.574702 CGACCTCGACAAAAAGGGGC 61.575 60.000 0.00 0.00 43.02 5.80
1240 1299 2.510613 ACAAAATCCAACCCTACACGG 58.489 47.619 0.00 0.00 0.00 4.94
1241 1300 4.577834 AAACAAAATCCAACCCTACACG 57.422 40.909 0.00 0.00 0.00 4.49
1242 1301 5.522097 CACAAAACAAAATCCAACCCTACAC 59.478 40.000 0.00 0.00 0.00 2.90
1243 1302 5.187967 ACACAAAACAAAATCCAACCCTACA 59.812 36.000 0.00 0.00 0.00 2.74
1244 1303 5.522097 CACACAAAACAAAATCCAACCCTAC 59.478 40.000 0.00 0.00 0.00 3.18
1245 1304 5.187967 ACACACAAAACAAAATCCAACCCTA 59.812 36.000 0.00 0.00 0.00 3.53
1246 1305 4.019771 ACACACAAAACAAAATCCAACCCT 60.020 37.500 0.00 0.00 0.00 4.34
1247 1306 4.094146 CACACACAAAACAAAATCCAACCC 59.906 41.667 0.00 0.00 0.00 4.11
1248 1307 4.693095 ACACACACAAAACAAAATCCAACC 59.307 37.500 0.00 0.00 0.00 3.77
1266 1489 4.293415 CATCAAAGCTCAGGAAAACACAC 58.707 43.478 0.00 0.00 0.00 3.82
1427 1650 1.076332 GCATCGTTACAGGACCACAC 58.924 55.000 0.00 0.00 0.00 3.82
1565 2966 5.925969 CAGCAAACTTTTACCCATAACAAGG 59.074 40.000 0.00 0.00 0.00 3.61
1569 2970 5.243060 ACTCCAGCAAACTTTTACCCATAAC 59.757 40.000 0.00 0.00 0.00 1.89
1581 2982 3.821033 GGAATACAACACTCCAGCAAACT 59.179 43.478 0.00 0.00 0.00 2.66
1582 2983 3.821033 AGGAATACAACACTCCAGCAAAC 59.179 43.478 0.00 0.00 0.00 2.93
1583 2984 3.820467 CAGGAATACAACACTCCAGCAAA 59.180 43.478 0.00 0.00 0.00 3.68
1584 2985 3.411446 CAGGAATACAACACTCCAGCAA 58.589 45.455 0.00 0.00 0.00 3.91
1608 3009 1.564622 CGAAGTGTGGCGTGTCTTG 59.435 57.895 0.00 0.00 0.00 3.02
1617 3018 5.432885 AAGTAAAAATGACCGAAGTGTGG 57.567 39.130 0.00 0.00 0.00 4.17
1625 3026 6.142320 GCTCTTGTTCAAAGTAAAAATGACCG 59.858 38.462 0.00 0.00 0.00 4.79
1644 3103 3.425162 AAGAGTAAAGTGGGGCTCTTG 57.575 47.619 5.05 0.00 43.92 3.02
1648 3107 3.456277 CCAGATAAGAGTAAAGTGGGGCT 59.544 47.826 0.00 0.00 0.00 5.19
2301 3763 5.494618 CAACAATGCAACAACTCAAATGTG 58.505 37.500 0.00 0.00 0.00 3.21
2335 3797 4.396478 TCCTTCTGTGATGAAGTAGAGACG 59.604 45.833 0.00 0.00 41.17 4.18
2346 3808 4.462508 TGTAGCTCTTCCTTCTGTGATG 57.537 45.455 0.00 0.00 0.00 3.07
2441 3916 5.188555 ACTGGCATATGGGTCACTATGATAG 59.811 44.000 4.56 0.00 0.00 2.08
2442 3917 5.093677 ACTGGCATATGGGTCACTATGATA 58.906 41.667 4.56 0.00 0.00 2.15
2444 3919 3.317406 ACTGGCATATGGGTCACTATGA 58.683 45.455 4.56 0.00 0.00 2.15
2558 4034 7.793036 TCATGAAAATGGAAATTGGCATATGA 58.207 30.769 6.97 0.00 0.00 2.15
2579 4055 8.997323 GGACACTGGATTATCTTCTTATTCATG 58.003 37.037 0.00 0.00 0.00 3.07
2685 4161 9.982291 TTAAGAAAAGCGATATGTGTATTTGAC 57.018 29.630 0.00 0.00 0.00 3.18
2776 4252 8.672815 GCAGAAGAGCTAAGAATATTCAAACTT 58.327 33.333 17.56 12.24 0.00 2.66
3019 4496 8.273780 AGAAAGAAATCCAATCATACTGTGTC 57.726 34.615 0.00 0.00 0.00 3.67
3041 4518 6.831353 TGAAAAGTTGGATTTGTAGGTGAGAA 59.169 34.615 0.00 0.00 0.00 2.87
3321 4837 4.340666 TCCTTTACAATGCACTGAAAAGCA 59.659 37.500 0.26 0.00 45.92 3.91
3383 4899 6.112734 TCAAGTACTGAACAAGCAAGAGAAA 58.887 36.000 0.00 0.00 0.00 2.52
3488 5004 7.491372 GGGTAAGCTAGCAATTCAAAAATAACC 59.509 37.037 18.83 5.16 0.00 2.85
3489 5005 8.032451 TGGGTAAGCTAGCAATTCAAAAATAAC 58.968 33.333 18.83 0.00 0.00 1.89
3546 5063 5.713025 AGTACATGTCATGAAAACAATGGC 58.287 37.500 19.77 0.00 0.00 4.40
3601 5118 1.203100 AGCTTTCAGCCACCCTTCATT 60.203 47.619 0.00 0.00 43.77 2.57
3637 5154 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3638 5155 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3639 5156 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3640 5157 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3657 5174 9.720769 TCCGTATTGAAATCTCTAAAAAGACTT 57.279 29.630 0.00 0.00 0.00 3.01
3658 5175 9.152595 GTCCGTATTGAAATCTCTAAAAAGACT 57.847 33.333 0.00 0.00 0.00 3.24
3659 5176 9.152595 AGTCCGTATTGAAATCTCTAAAAAGAC 57.847 33.333 0.00 0.00 0.00 3.01
3670 5187 9.291664 GCTCTGTATATAGTCCGTATTGAAATC 57.708 37.037 0.00 0.00 0.00 2.17
3671 5188 8.803235 TGCTCTGTATATAGTCCGTATTGAAAT 58.197 33.333 0.00 0.00 0.00 2.17
3672 5189 8.173542 TGCTCTGTATATAGTCCGTATTGAAA 57.826 34.615 0.00 0.00 0.00 2.69
3673 5190 7.754851 TGCTCTGTATATAGTCCGTATTGAA 57.245 36.000 0.00 0.00 0.00 2.69
3674 5191 7.754851 TTGCTCTGTATATAGTCCGTATTGA 57.245 36.000 0.00 0.00 0.00 2.57
3675 5192 8.812147 TTTTGCTCTGTATATAGTCCGTATTG 57.188 34.615 0.00 0.00 0.00 1.90
3676 5193 9.424319 CATTTTGCTCTGTATATAGTCCGTATT 57.576 33.333 0.00 0.00 0.00 1.89
3677 5194 8.803235 TCATTTTGCTCTGTATATAGTCCGTAT 58.197 33.333 0.00 0.00 0.00 3.06
3678 5195 8.173542 TCATTTTGCTCTGTATATAGTCCGTA 57.826 34.615 0.00 0.00 0.00 4.02
3679 5196 7.050970 TCATTTTGCTCTGTATATAGTCCGT 57.949 36.000 0.00 0.00 0.00 4.69
3680 5197 7.115520 CACTCATTTTGCTCTGTATATAGTCCG 59.884 40.741 0.00 0.00 0.00 4.79
3681 5198 8.144478 TCACTCATTTTGCTCTGTATATAGTCC 58.856 37.037 0.00 0.00 0.00 3.85
3682 5199 9.534565 TTCACTCATTTTGCTCTGTATATAGTC 57.465 33.333 0.00 0.00 0.00 2.59
3687 5204 9.534565 GTAGATTCACTCATTTTGCTCTGTATA 57.465 33.333 0.00 0.00 0.00 1.47
3688 5205 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
3689 5206 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
3690 5207 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
3691 5208 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
3692 5209 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
3693 5210 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3725 5242 9.955102 AGAACTACATACGGATGTATATAGACA 57.045 33.333 20.64 2.07 45.42 3.41
3734 5251 9.832445 ATTTCAATAAGAACTACATACGGATGT 57.168 29.630 19.12 19.12 41.78 3.06
3737 5254 9.745880 GAGATTTCAATAAGAACTACATACGGA 57.254 33.333 0.00 0.00 35.56 4.69
3738 5255 9.751542 AGAGATTTCAATAAGAACTACATACGG 57.248 33.333 0.00 0.00 35.56 4.02
3755 5272 9.490379 GGAGTACAAGTCTTTTTAGAGATTTCA 57.510 33.333 0.00 0.00 0.00 2.69
3756 5273 9.713713 AGGAGTACAAGTCTTTTTAGAGATTTC 57.286 33.333 0.00 0.00 0.00 2.17
3759 5276 9.495572 CAAAGGAGTACAAGTCTTTTTAGAGAT 57.504 33.333 0.00 0.00 26.16 2.75
3760 5277 8.483758 ACAAAGGAGTACAAGTCTTTTTAGAGA 58.516 33.333 0.00 0.00 26.16 3.10
3761 5278 8.664211 ACAAAGGAGTACAAGTCTTTTTAGAG 57.336 34.615 0.00 0.00 26.16 2.43
3765 5282 9.239551 AGTTTACAAAGGAGTACAAGTCTTTTT 57.760 29.630 0.00 0.00 26.16 1.94
3766 5283 8.803397 AGTTTACAAAGGAGTACAAGTCTTTT 57.197 30.769 0.00 0.00 28.38 2.27
3767 5284 9.895138 TTAGTTTACAAAGGAGTACAAGTCTTT 57.105 29.630 0.00 0.00 0.00 2.52
3777 5294 9.530633 CGCTCTTATATTAGTTTACAAAGGAGT 57.469 33.333 0.00 0.00 0.00 3.85
3778 5295 9.530633 ACGCTCTTATATTAGTTTACAAAGGAG 57.469 33.333 0.00 0.00 0.00 3.69
3779 5296 9.880157 AACGCTCTTATATTAGTTTACAAAGGA 57.120 29.630 0.00 0.00 0.00 3.36
3795 5312 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3796 5313 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3797 5314 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3798 5315 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3799 5316 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
3800 5317 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
3801 5318 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
3807 5324 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
3808 5325 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
3809 5326 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
3810 5327 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
3811 5328 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
3825 5342 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3826 5343 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3827 5344 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3828 5345 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3829 5346 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3830 5347 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3831 5348 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3832 5349 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3833 5350 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3834 5351 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3835 5352 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3836 5353 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
3838 5355 9.294614 CTAAGTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
3839 5356 7.721399 CCTAAGTACTCCCTCCGTAAACTAATA 59.279 40.741 0.00 0.00 0.00 0.98
3840 5357 6.548993 CCTAAGTACTCCCTCCGTAAACTAAT 59.451 42.308 0.00 0.00 0.00 1.73
3841 5358 5.888161 CCTAAGTACTCCCTCCGTAAACTAA 59.112 44.000 0.00 0.00 0.00 2.24
3842 5359 5.191722 TCCTAAGTACTCCCTCCGTAAACTA 59.808 44.000 0.00 0.00 0.00 2.24
3843 5360 4.018050 TCCTAAGTACTCCCTCCGTAAACT 60.018 45.833 0.00 0.00 0.00 2.66
3844 5361 4.273318 TCCTAAGTACTCCCTCCGTAAAC 58.727 47.826 0.00 0.00 0.00 2.01
3845 5362 4.591321 TCCTAAGTACTCCCTCCGTAAA 57.409 45.455 0.00 0.00 0.00 2.01
3846 5363 4.273318 GTTCCTAAGTACTCCCTCCGTAA 58.727 47.826 0.00 0.00 0.00 3.18
3847 5364 3.682718 CGTTCCTAAGTACTCCCTCCGTA 60.683 52.174 0.00 0.00 0.00 4.02
3848 5365 2.732763 GTTCCTAAGTACTCCCTCCGT 58.267 52.381 0.00 0.00 0.00 4.69
3849 5366 1.674962 CGTTCCTAAGTACTCCCTCCG 59.325 57.143 0.00 0.00 0.00 4.63
3850 5367 2.030371 CCGTTCCTAAGTACTCCCTCC 58.970 57.143 0.00 0.00 0.00 4.30
3851 5368 2.950975 CTCCGTTCCTAAGTACTCCCTC 59.049 54.545 0.00 0.00 0.00 4.30
3852 5369 2.357986 CCTCCGTTCCTAAGTACTCCCT 60.358 54.545 0.00 0.00 0.00 4.20
3853 5370 2.030371 CCTCCGTTCCTAAGTACTCCC 58.970 57.143 0.00 0.00 0.00 4.30
3854 5371 3.010200 TCCTCCGTTCCTAAGTACTCC 57.990 52.381 0.00 0.00 0.00 3.85
3855 5372 4.015764 ACTTCCTCCGTTCCTAAGTACTC 58.984 47.826 0.00 0.00 0.00 2.59
3856 5373 4.044946 ACTTCCTCCGTTCCTAAGTACT 57.955 45.455 0.00 0.00 0.00 2.73
3857 5374 6.462552 AATACTTCCTCCGTTCCTAAGTAC 57.537 41.667 0.00 0.00 35.96 2.73
3858 5375 6.183360 CGAAATACTTCCTCCGTTCCTAAGTA 60.183 42.308 0.00 0.00 37.14 2.24
3859 5376 5.393896 CGAAATACTTCCTCCGTTCCTAAGT 60.394 44.000 0.00 0.00 34.86 2.24
3860 5377 5.041940 CGAAATACTTCCTCCGTTCCTAAG 58.958 45.833 0.00 0.00 0.00 2.18
3861 5378 4.463891 ACGAAATACTTCCTCCGTTCCTAA 59.536 41.667 0.00 0.00 0.00 2.69
3862 5379 4.019174 ACGAAATACTTCCTCCGTTCCTA 58.981 43.478 0.00 0.00 0.00 2.94
3863 5380 2.830321 ACGAAATACTTCCTCCGTTCCT 59.170 45.455 0.00 0.00 0.00 3.36
3864 5381 3.242549 ACGAAATACTTCCTCCGTTCC 57.757 47.619 0.00 0.00 0.00 3.62
3865 5382 4.267214 GCTAACGAAATACTTCCTCCGTTC 59.733 45.833 0.00 0.00 40.16 3.95
3866 5383 4.179298 GCTAACGAAATACTTCCTCCGTT 58.821 43.478 0.00 0.00 41.96 4.44
3867 5384 3.194116 TGCTAACGAAATACTTCCTCCGT 59.806 43.478 0.00 0.00 0.00 4.69
3868 5385 3.777478 TGCTAACGAAATACTTCCTCCG 58.223 45.455 0.00 0.00 0.00 4.63
3869 5386 4.750598 GGATGCTAACGAAATACTTCCTCC 59.249 45.833 0.00 0.00 0.00 4.30
3870 5387 5.602628 AGGATGCTAACGAAATACTTCCTC 58.397 41.667 0.00 0.00 31.31 3.71
3871 5388 5.615925 AGGATGCTAACGAAATACTTCCT 57.384 39.130 0.00 0.00 31.92 3.36
3872 5389 7.152645 TGATAGGATGCTAACGAAATACTTCC 58.847 38.462 0.00 0.00 0.00 3.46
3873 5390 8.651588 CATGATAGGATGCTAACGAAATACTTC 58.348 37.037 0.00 0.00 0.00 3.01
3874 5391 8.150945 ACATGATAGGATGCTAACGAAATACTT 58.849 33.333 0.00 0.00 0.00 2.24
3875 5392 7.671302 ACATGATAGGATGCTAACGAAATACT 58.329 34.615 0.00 0.00 0.00 2.12
3876 5393 7.891183 ACATGATAGGATGCTAACGAAATAC 57.109 36.000 0.00 0.00 0.00 1.89
3877 5394 8.902540 AAACATGATAGGATGCTAACGAAATA 57.097 30.769 0.00 0.00 0.00 1.40
3878 5395 7.807977 AAACATGATAGGATGCTAACGAAAT 57.192 32.000 0.00 0.00 0.00 2.17
4085 5609 4.819630 GGTGACTGGTCAAGTAACAAATGA 59.180 41.667 4.92 0.00 41.66 2.57
4093 5617 1.975680 GAAGGGGTGACTGGTCAAGTA 59.024 52.381 4.92 0.00 41.85 2.24
4210 5734 1.449601 CGGAGGAACCATTGTCCGG 60.450 63.158 0.00 0.00 46.68 5.14
4346 5879 5.163814 GCATGGCATCTAAATATCCTTCGTC 60.164 44.000 0.00 0.00 0.00 4.20
4392 5925 3.753294 ATCGGTGGGAATGATAGTGAC 57.247 47.619 0.00 0.00 0.00 3.67
4393 5926 3.454447 ACAATCGGTGGGAATGATAGTGA 59.546 43.478 0.00 0.00 29.86 3.41
4394 5927 3.808728 ACAATCGGTGGGAATGATAGTG 58.191 45.455 0.00 0.00 29.86 2.74
4396 5929 4.956085 TGTACAATCGGTGGGAATGATAG 58.044 43.478 0.00 0.00 29.86 2.08
4397 5930 4.651962 TCTGTACAATCGGTGGGAATGATA 59.348 41.667 0.00 0.00 29.86 2.15
4400 5933 3.260475 TCTGTACAATCGGTGGGAATG 57.740 47.619 0.00 0.00 0.00 2.67
4401 5934 3.454447 TGATCTGTACAATCGGTGGGAAT 59.546 43.478 0.00 0.00 0.00 3.01
4409 5942 3.871594 GGGGTTTCTGATCTGTACAATCG 59.128 47.826 0.00 1.55 0.00 3.34
4448 5981 4.549458 CAAAAGCGAGTCCATCAAATTGT 58.451 39.130 0.00 0.00 0.00 2.71
4491 6027 1.991264 GGAAAAGTACGGAGAAGACGC 59.009 52.381 0.00 0.00 34.00 5.19
4492 6028 2.230750 AGGGAAAAGTACGGAGAAGACG 59.769 50.000 0.00 0.00 37.36 4.18
4540 6086 2.279741 GAAGAACGCATGCACCATCTA 58.720 47.619 19.57 0.00 0.00 1.98
4754 7629 3.147595 CCGCTCCTCCATCGGTCA 61.148 66.667 0.00 0.00 38.47 4.02
4755 7630 4.593864 GCCGCTCCTCCATCGGTC 62.594 72.222 1.83 0.00 44.58 4.79
4801 7676 0.113776 TACCCCTAGGCGACCATAGG 59.886 60.000 2.05 0.00 38.66 2.57
4829 7704 2.092211 CGCATACAAAGGTCGTCTTCAC 59.908 50.000 0.00 0.00 33.94 3.18
4855 7730 3.264193 ACTTCCTATGATTCTGTGGCACA 59.736 43.478 20.76 20.76 0.00 4.57
4878 7753 2.520982 TCCCGCTCTATCCCACCG 60.521 66.667 0.00 0.00 0.00 4.94
4891 7766 0.536687 TCCCACGCTCTATAGTCCCG 60.537 60.000 0.00 4.08 0.00 5.14
4926 7801 3.680196 GCTAGTCTTCATCAGGGGTTGTC 60.680 52.174 0.00 0.00 0.00 3.18
4930 7805 2.023501 AGAGCTAGTCTTCATCAGGGGT 60.024 50.000 0.00 0.00 27.07 4.95
4934 7809 7.223193 CAGATCAAAAGAGCTAGTCTTCATCAG 59.777 40.741 0.00 4.93 45.44 2.90
4980 7855 1.141234 CTAGGTTTCTCCCGCGGAC 59.859 63.158 30.73 16.80 36.75 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.