Multiple sequence alignment - TraesCS3D01G289400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G289400 chr3D 100.000 4098 0 0 1 4098 399369549 399373646 0.000000e+00 7568.0
1 TraesCS3D01G289400 chr3D 100.000 3987 0 0 4436 8422 399373984 399377970 0.000000e+00 7363.0
2 TraesCS3D01G289400 chr3D 95.915 1175 44 4 5208 6379 422741976 422743149 0.000000e+00 1901.0
3 TraesCS3D01G289400 chr3D 100.000 32 0 0 8147 8178 399377614 399377645 9.130000e-05 60.2
4 TraesCS3D01G289400 chr3D 100.000 32 0 0 8066 8097 399377695 399377726 9.130000e-05 60.2
5 TraesCS3D01G289400 chr3B 94.544 1558 44 16 6444 7984 525234796 525236329 0.000000e+00 2368.0
6 TraesCS3D01G289400 chr3B 95.223 921 25 4 745 1663 525227937 525228840 0.000000e+00 1439.0
7 TraesCS3D01G289400 chr3B 94.086 744 31 10 3 739 525226888 525227625 0.000000e+00 1118.0
8 TraesCS3D01G289400 chr3B 93.528 618 27 4 4607 5211 525234014 525234631 0.000000e+00 907.0
9 TraesCS3D01G289400 chr3B 90.836 622 21 8 1666 2260 525232496 525233108 0.000000e+00 800.0
10 TraesCS3D01G289400 chr3B 89.655 377 30 6 3724 4098 525233239 525233608 9.900000e-129 472.0
11 TraesCS3D01G289400 chr3B 79.348 644 95 20 2260 2874 773166010 773165376 1.310000e-112 418.0
12 TraesCS3D01G289400 chr3B 85.156 256 23 8 8130 8372 525236336 525236589 1.820000e-61 248.0
13 TraesCS3D01G289400 chr3B 94.406 143 7 1 3539 3680 525233102 525233244 1.420000e-52 219.0
14 TraesCS3D01G289400 chr3B 96.053 76 3 0 6368 6443 525234655 525234730 3.190000e-24 124.0
15 TraesCS3D01G289400 chr3B 100.000 58 0 0 8363 8420 525240284 525240341 3.210000e-19 108.0
16 TraesCS3D01G289400 chr3B 89.412 85 8 1 8210 8293 22056019 22056103 1.160000e-18 106.0
17 TraesCS3D01G289400 chr3A 91.470 1524 71 28 761 2260 518629969 518631457 0.000000e+00 2039.0
18 TraesCS3D01G289400 chr3A 95.652 828 27 6 6757 7579 518633483 518634306 0.000000e+00 1321.0
19 TraesCS3D01G289400 chr3A 91.667 564 44 3 3535 4098 518631468 518632028 0.000000e+00 778.0
20 TraesCS3D01G289400 chr3A 94.749 438 18 2 279 714 518627779 518628213 0.000000e+00 676.0
21 TraesCS3D01G289400 chr3A 95.808 334 9 3 6444 6775 518633136 518633466 1.240000e-147 534.0
22 TraesCS3D01G289400 chr3A 85.782 422 55 5 2261 2680 705251164 705251582 7.760000e-120 442.0
23 TraesCS3D01G289400 chr3A 94.958 238 8 4 3 236 518627005 518627242 3.710000e-98 370.0
24 TraesCS3D01G289400 chr3A 79.412 510 100 5 3590 4096 384188185 384187678 1.040000e-93 355.0
25 TraesCS3D01G289400 chr3A 88.411 302 13 9 7542 7840 518634306 518634588 2.250000e-90 344.0
26 TraesCS3D01G289400 chr3A 96.618 207 6 1 4956 5162 518632766 518632971 8.090000e-90 342.0
27 TraesCS3D01G289400 chr3A 93.500 200 5 4 4767 4961 518632771 518632575 2.970000e-74 291.0
28 TraesCS3D01G289400 chr3A 90.431 209 17 1 1016 1221 689417129 689416921 1.080000e-68 272.0
29 TraesCS3D01G289400 chr3A 91.279 172 8 2 4607 4771 518632408 518632579 2.360000e-55 228.0
30 TraesCS3D01G289400 chr3A 90.000 140 11 3 7828 7966 518634659 518634796 2.420000e-40 178.0
31 TraesCS3D01G289400 chr3A 98.305 59 1 0 6369 6427 518633005 518633063 4.160000e-18 104.0
32 TraesCS3D01G289400 chr3A 93.333 45 3 0 8145 8189 518634805 518634849 5.460000e-07 67.6
33 TraesCS3D01G289400 chr5D 96.344 1176 37 5 5208 6378 292149059 292147885 0.000000e+00 1929.0
34 TraesCS3D01G289400 chr5D 89.720 214 22 0 1025 1238 291501071 291500858 3.000000e-69 274.0
35 TraesCS3D01G289400 chr5D 84.672 137 14 6 2017 2148 254632793 254632659 6.860000e-26 130.0
36 TraesCS3D01G289400 chr4D 96.088 1176 41 5 5208 6379 242937795 242938969 0.000000e+00 1912.0
37 TraesCS3D01G289400 chr4D 84.496 129 15 5 2014 2140 414153569 414153694 1.150000e-23 122.0
38 TraesCS3D01G289400 chr7D 96.085 1175 41 5 5208 6379 465339396 465340568 0.000000e+00 1910.0
39 TraesCS3D01G289400 chr7D 80.912 592 79 15 2260 2825 186006960 186006377 3.610000e-118 436.0
40 TraesCS3D01G289400 chr7D 92.694 219 15 1 1016 1233 477072292 477072510 1.760000e-81 315.0
41 TraesCS3D01G289400 chr7D 82.993 294 41 8 3590 3878 140332943 140332654 3.020000e-64 257.0
42 TraesCS3D01G289400 chr7D 86.567 134 10 7 2015 2143 449463602 449463732 3.170000e-29 141.0
43 TraesCS3D01G289400 chr7D 91.667 60 5 0 7984 8043 191814332 191814391 5.420000e-12 84.2
44 TraesCS3D01G289400 chr2D 96.223 1165 41 3 5208 6369 97866555 97865391 0.000000e+00 1905.0
45 TraesCS3D01G289400 chr2D 96.137 1165 42 3 5208 6369 136425638 136426802 0.000000e+00 1899.0
46 TraesCS3D01G289400 chr2D 84.638 345 48 5 3591 3931 296357232 296357575 1.050000e-88 339.0
47 TraesCS3D01G289400 chr2D 84.127 126 17 3 2017 2140 375149137 375149013 1.490000e-22 119.0
48 TraesCS3D01G289400 chr1D 96.223 1165 41 3 5208 6369 223523404 223524568 0.000000e+00 1905.0
49 TraesCS3D01G289400 chr1D 96.068 1170 42 4 5208 6373 394149211 394148042 0.000000e+00 1903.0
50 TraesCS3D01G289400 chr1D 91.339 127 9 2 2017 2141 211684202 211684076 1.120000e-38 172.0
51 TraesCS3D01G289400 chr1D 91.026 78 6 1 8217 8293 320589948 320590025 4.160000e-18 104.0
52 TraesCS3D01G289400 chr1D 88.372 86 8 2 8220 8304 199867567 199867483 1.500000e-17 102.0
53 TraesCS3D01G289400 chr7B 96.220 1164 41 3 5209 6369 700428807 700429970 0.000000e+00 1903.0
54 TraesCS3D01G289400 chr7B 92.237 219 16 1 1016 1233 501508501 501508719 8.210000e-80 309.0
55 TraesCS3D01G289400 chr6D 95.851 723 27 3 2260 2980 306319466 306318745 0.000000e+00 1166.0
56 TraesCS3D01G289400 chr6D 94.980 498 22 1 2977 3474 306318720 306318226 0.000000e+00 778.0
57 TraesCS3D01G289400 chr6D 78.208 413 69 17 3590 3986 157157459 157157052 2.350000e-60 244.0
58 TraesCS3D01G289400 chr6D 76.301 519 81 22 3590 4098 129700204 129700690 1.090000e-58 239.0
59 TraesCS3D01G289400 chr6D 88.889 90 7 3 2015 2103 9137594 9137507 3.210000e-19 108.0
60 TraesCS3D01G289400 chr2A 93.343 721 44 3 2260 2980 447370641 447371357 0.000000e+00 1062.0
61 TraesCS3D01G289400 chr2A 93.625 502 32 0 2977 3478 447371382 447371883 0.000000e+00 750.0
62 TraesCS3D01G289400 chr2A 83.237 346 52 5 3591 3931 367616335 367616679 6.350000e-81 313.0
63 TraesCS3D01G289400 chr7A 93.352 722 41 6 2260 2980 24375551 24374836 0.000000e+00 1061.0
64 TraesCS3D01G289400 chr7A 93.352 722 41 6 2260 2980 24394521 24393806 0.000000e+00 1061.0
65 TraesCS3D01G289400 chr7A 81.803 588 68 17 2260 2820 191211311 191210736 2.770000e-124 457.0
66 TraesCS3D01G289400 chr7A 92.694 219 15 1 1016 1233 518809689 518809471 1.760000e-81 315.0
67 TraesCS3D01G289400 chr7A 95.270 148 7 0 2977 3124 24374811 24374664 1.410000e-57 235.0
68 TraesCS3D01G289400 chr7A 95.270 148 7 0 2977 3124 24393781 24393634 1.410000e-57 235.0
69 TraesCS3D01G289400 chr6A 83.129 735 82 17 2260 2973 197037643 197038356 4.290000e-177 632.0
70 TraesCS3D01G289400 chr6A 90.123 81 7 1 8220 8299 64260784 64260704 4.160000e-18 104.0
71 TraesCS3D01G289400 chrUn 80.148 675 87 19 2260 2909 41161084 41160432 2.140000e-125 460.0
72 TraesCS3D01G289400 chr4A 79.300 657 96 19 2260 2889 83741375 83740732 2.810000e-114 424.0
73 TraesCS3D01G289400 chr4A 85.385 130 15 4 2014 2140 49257484 49257356 1.910000e-26 132.0
74 TraesCS3D01G289400 chr4A 86.486 74 6 4 7969 8042 18055303 18055234 2.520000e-10 78.7
75 TraesCS3D01G289400 chr5B 77.943 671 104 20 2260 2905 522025361 522024710 6.170000e-101 379.0
76 TraesCS3D01G289400 chr5B 89.720 214 22 0 1025 1238 332202995 332202782 3.000000e-69 274.0
77 TraesCS3D01G289400 chr5A 89.908 218 21 1 1025 1242 383883151 383882935 6.440000e-71 279.0
78 TraesCS3D01G289400 chr5A 73.609 701 119 27 2260 2935 624797927 624798586 8.570000e-50 209.0
79 TraesCS3D01G289400 chr5A 80.465 215 31 9 2681 2890 7504121 7503913 4.070000e-33 154.0
80 TraesCS3D01G289400 chr5A 91.228 57 5 0 7987 8043 392800640 392800696 2.520000e-10 78.7
81 TraesCS3D01G289400 chr6B 77.132 516 93 15 3594 4098 279908967 279908466 8.330000e-70 276.0
82 TraesCS3D01G289400 chr6B 91.358 81 6 1 8220 8299 512188584 512188504 8.940000e-20 110.0
83 TraesCS3D01G289400 chr2B 83.871 124 15 5 2021 2140 445257293 445257171 6.910000e-21 113.0
84 TraesCS3D01G289400 chr2B 88.636 88 9 1 8213 8299 754008537 754008450 1.160000e-18 106.0
85 TraesCS3D01G289400 chr2B 83.193 119 16 4 2018 2133 771977652 771977769 1.160000e-18 106.0
86 TraesCS3D01G289400 chr2B 83.333 108 14 3 8203 8309 139078897 139079001 6.960000e-16 97.1
87 TraesCS3D01G289400 chr2B 91.071 56 3 2 7981 8036 381299782 381299835 3.260000e-09 75.0
88 TraesCS3D01G289400 chr2B 89.655 58 5 1 7986 8042 594086387 594086330 1.170000e-08 73.1
89 TraesCS3D01G289400 chr1B 88.372 86 8 2 8220 8304 286709114 286709030 1.500000e-17 102.0
90 TraesCS3D01G289400 chr1B 89.655 58 5 1 7986 8042 672133833 672133890 1.170000e-08 73.1
91 TraesCS3D01G289400 chr4B 87.500 64 7 1 7980 8042 92556338 92556275 1.170000e-08 73.1
92 TraesCS3D01G289400 chr1A 88.136 59 7 0 7985 8043 456336375 456336317 4.220000e-08 71.3
93 TraesCS3D01G289400 chr1A 86.364 66 6 3 7978 8042 579202818 579202881 1.520000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G289400 chr3D 399369549 399377970 8421 False 3762.85 7568 100.000000 1 8422 4 chr3D.!!$F2 8421
1 TraesCS3D01G289400 chr3D 422741976 422743149 1173 False 1901.00 1901 95.915000 5208 6379 1 chr3D.!!$F1 1171
2 TraesCS3D01G289400 chr3B 525226888 525240341 13453 False 780.30 2368 93.348700 3 8420 10 chr3B.!!$F2 8417
3 TraesCS3D01G289400 chr3B 773165376 773166010 634 True 418.00 418 79.348000 2260 2874 1 chr3B.!!$R1 614
4 TraesCS3D01G289400 chr3A 518627005 518634849 7844 False 581.80 2039 93.520833 3 8189 12 chr3A.!!$F2 8186
5 TraesCS3D01G289400 chr3A 384187678 384188185 507 True 355.00 355 79.412000 3590 4096 1 chr3A.!!$R1 506
6 TraesCS3D01G289400 chr5D 292147885 292149059 1174 True 1929.00 1929 96.344000 5208 6378 1 chr5D.!!$R3 1170
7 TraesCS3D01G289400 chr4D 242937795 242938969 1174 False 1912.00 1912 96.088000 5208 6379 1 chr4D.!!$F1 1171
8 TraesCS3D01G289400 chr7D 465339396 465340568 1172 False 1910.00 1910 96.085000 5208 6379 1 chr7D.!!$F3 1171
9 TraesCS3D01G289400 chr7D 186006377 186006960 583 True 436.00 436 80.912000 2260 2825 1 chr7D.!!$R2 565
10 TraesCS3D01G289400 chr2D 97865391 97866555 1164 True 1905.00 1905 96.223000 5208 6369 1 chr2D.!!$R1 1161
11 TraesCS3D01G289400 chr2D 136425638 136426802 1164 False 1899.00 1899 96.137000 5208 6369 1 chr2D.!!$F1 1161
12 TraesCS3D01G289400 chr1D 223523404 223524568 1164 False 1905.00 1905 96.223000 5208 6369 1 chr1D.!!$F1 1161
13 TraesCS3D01G289400 chr1D 394148042 394149211 1169 True 1903.00 1903 96.068000 5208 6373 1 chr1D.!!$R3 1165
14 TraesCS3D01G289400 chr7B 700428807 700429970 1163 False 1903.00 1903 96.220000 5209 6369 1 chr7B.!!$F2 1160
15 TraesCS3D01G289400 chr6D 306318226 306319466 1240 True 972.00 1166 95.415500 2260 3474 2 chr6D.!!$R3 1214
16 TraesCS3D01G289400 chr2A 447370641 447371883 1242 False 906.00 1062 93.484000 2260 3478 2 chr2A.!!$F2 1218
17 TraesCS3D01G289400 chr7A 24374664 24375551 887 True 648.00 1061 94.311000 2260 3124 2 chr7A.!!$R3 864
18 TraesCS3D01G289400 chr7A 24393634 24394521 887 True 648.00 1061 94.311000 2260 3124 2 chr7A.!!$R4 864
19 TraesCS3D01G289400 chr7A 191210736 191211311 575 True 457.00 457 81.803000 2260 2820 1 chr7A.!!$R1 560
20 TraesCS3D01G289400 chr6A 197037643 197038356 713 False 632.00 632 83.129000 2260 2973 1 chr6A.!!$F1 713
21 TraesCS3D01G289400 chrUn 41160432 41161084 652 True 460.00 460 80.148000 2260 2909 1 chrUn.!!$R1 649
22 TraesCS3D01G289400 chr4A 83740732 83741375 643 True 424.00 424 79.300000 2260 2889 1 chr4A.!!$R3 629
23 TraesCS3D01G289400 chr5B 522024710 522025361 651 True 379.00 379 77.943000 2260 2905 1 chr5B.!!$R2 645
24 TraesCS3D01G289400 chr5A 624797927 624798586 659 False 209.00 209 73.609000 2260 2935 1 chr5A.!!$F2 675
25 TraesCS3D01G289400 chr6B 279908466 279908967 501 True 276.00 276 77.132000 3594 4098 1 chr6B.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.036388 TGCCTAGCCACCGAGAAAAG 60.036 55.0 0.00 0.0 0.00 2.27 F
277 777 0.947660 GGAGGTCGTTTCCGTGGAAC 60.948 60.0 0.00 0.0 33.41 3.62 F
1841 7803 0.698818 GGGGTGTGATTGGAGAAGGT 59.301 55.0 0.00 0.0 0.00 3.50 F
2657 8665 0.109086 AACGAGTCCAGAGCACATCG 60.109 55.0 0.00 0.0 36.32 3.84 F
3139 9204 0.249489 CAAGCCCGTAGAAGGATCCG 60.249 60.0 5.98 0.0 0.00 4.18 F
3502 9567 0.394352 CGGAGGCAGGGCTGTTTATT 60.394 55.0 0.00 0.0 0.00 1.40 F
4790 11108 0.673644 CAGGAAACCCACTGCCTACG 60.674 60.0 0.00 0.0 0.00 3.51 F
5964 12295 0.249398 GTTAGGTGTGGCGGAGATGT 59.751 55.0 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 3518 0.902048 CAGGCAGTCACCTCTCCTGA 60.902 60.000 0.53 0.00 45.31 3.86 R
2151 8124 0.250038 TCATCTATTGGAGCGGCTGC 60.250 55.000 15.13 15.13 43.24 5.25 R
3483 9548 0.394352 AATAAACAGCCCTGCCTCCG 60.394 55.000 0.00 0.00 0.00 4.63 R
4565 10654 1.073199 CTGAAACTTCCCACCGCCT 59.927 57.895 0.00 0.00 0.00 5.52 R
4790 11108 1.068741 CCTATAACCTGTGTCCGAGCC 59.931 57.143 0.00 0.00 0.00 4.70 R
4818 11140 5.255687 TGCTCCTTATTTTCTGCAATCAGA 58.744 37.500 0.00 0.00 46.90 3.27 R
6612 13008 0.260230 TGGGCCACACTTTTTCCTCA 59.740 50.000 0.00 0.00 0.00 3.86 R
7798 14282 0.546122 CCAATGGGCCACTGCTAGTA 59.454 55.000 9.28 0.00 37.74 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.393603 GGAGATTTTGCCTAGCCACC 58.606 55.000 0.00 0.00 0.00 4.61
41 42 0.618458 ATTTTGCCTAGCCACCGAGA 59.382 50.000 0.00 0.00 0.00 4.04
45 46 0.036388 TGCCTAGCCACCGAGAAAAG 60.036 55.000 0.00 0.00 0.00 2.27
178 182 8.923683 GGGAAAAACTCTATATATTACTCGCAC 58.076 37.037 0.00 0.00 0.00 5.34
277 777 0.947660 GGAGGTCGTTTCCGTGGAAC 60.948 60.000 0.00 0.00 33.41 3.62
604 1114 4.778415 CTCGCACCCACCGACGAG 62.778 72.222 0.00 0.00 45.02 4.18
717 1227 6.667848 TGTAGATTCAAGTATCACTGGGAGAA 59.332 38.462 0.00 0.00 0.00 2.87
739 1483 4.262617 AGAAGGGAACGATAAAAAGGCTC 58.737 43.478 0.00 0.00 0.00 4.70
745 1489 4.215613 GGAACGATAAAAAGGCTCTGTGTT 59.784 41.667 0.00 0.00 0.00 3.32
747 1491 6.072893 GGAACGATAAAAAGGCTCTGTGTTTA 60.073 38.462 0.00 0.00 0.00 2.01
750 1494 7.305474 ACGATAAAAAGGCTCTGTGTTTATTG 58.695 34.615 0.00 1.18 34.10 1.90
751 1495 7.040686 ACGATAAAAAGGCTCTGTGTTTATTGT 60.041 33.333 0.00 11.09 35.43 2.71
752 1496 7.481798 CGATAAAAAGGCTCTGTGTTTATTGTC 59.518 37.037 0.00 0.00 0.00 3.18
756 1500 6.992063 AAGGCTCTGTGTTTATTGTCATAG 57.008 37.500 0.00 0.00 0.00 2.23
782 3071 4.370917 CAAAATCATAAAATCGCAGGGGG 58.629 43.478 0.00 0.00 0.00 5.40
837 3126 7.609760 ACATTTCAGATTTATTACGACTGCA 57.390 32.000 0.00 0.00 0.00 4.41
838 3127 8.213518 ACATTTCAGATTTATTACGACTGCAT 57.786 30.769 0.00 0.00 0.00 3.96
839 3128 9.325198 ACATTTCAGATTTATTACGACTGCATA 57.675 29.630 0.00 0.00 0.00 3.14
840 3129 9.803130 CATTTCAGATTTATTACGACTGCATAG 57.197 33.333 0.00 0.00 0.00 2.23
841 3130 7.408132 TTCAGATTTATTACGACTGCATAGC 57.592 36.000 0.00 0.00 0.00 2.97
842 3131 6.512297 TCAGATTTATTACGACTGCATAGCA 58.488 36.000 0.00 0.00 36.92 3.49
945 3234 4.292178 CCGCGAGATCCAGAGCCC 62.292 72.222 8.23 0.00 0.00 5.19
1227 3518 1.303317 GATTTGGGACACAGCCGGT 60.303 57.895 1.90 0.00 39.29 5.28
1301 3592 2.011222 CTTGCCGCTTCCCGTTAATAA 58.989 47.619 0.00 0.00 34.38 1.40
1314 3605 4.260620 CCCGTTAATAACTGCTCAAATCGG 60.261 45.833 1.42 0.00 0.00 4.18
1315 3606 4.331717 CCGTTAATAACTGCTCAAATCGGT 59.668 41.667 1.42 0.00 0.00 4.69
1316 3607 5.521010 CCGTTAATAACTGCTCAAATCGGTA 59.479 40.000 1.42 0.00 0.00 4.02
1317 3608 6.292168 CCGTTAATAACTGCTCAAATCGGTAG 60.292 42.308 1.42 0.00 0.00 3.18
1318 3609 6.255020 CGTTAATAACTGCTCAAATCGGTAGT 59.745 38.462 1.42 0.00 0.00 2.73
1319 3610 7.433131 CGTTAATAACTGCTCAAATCGGTAGTA 59.567 37.037 1.42 0.00 0.00 1.82
1320 3611 8.753175 GTTAATAACTGCTCAAATCGGTAGTAG 58.247 37.037 0.00 0.00 0.00 2.57
1321 3612 4.803098 AACTGCTCAAATCGGTAGTAGT 57.197 40.909 0.00 0.00 37.73 2.73
1322 3613 5.909621 AACTGCTCAAATCGGTAGTAGTA 57.090 39.130 0.00 0.00 35.50 1.82
1323 3614 5.502153 ACTGCTCAAATCGGTAGTAGTAG 57.498 43.478 0.00 0.00 34.90 2.57
1324 3615 4.948621 ACTGCTCAAATCGGTAGTAGTAGT 59.051 41.667 0.00 0.00 34.90 2.73
1325 3616 6.118170 ACTGCTCAAATCGGTAGTAGTAGTA 58.882 40.000 0.00 0.00 34.90 1.82
1470 3773 1.465777 GGGTGATTGCTGCATTTTTGC 59.534 47.619 1.84 0.00 0.00 3.68
1478 3781 1.144969 CTGCATTTTTGCTGCCAGTG 58.855 50.000 0.00 0.00 38.89 3.66
1626 3930 1.146263 GGGTAGATTGGACGCCCAG 59.854 63.158 0.00 0.00 44.60 4.45
1647 3951 2.192664 TGTGATTTAGCGCTTGGGAA 57.807 45.000 18.68 0.00 0.00 3.97
1708 7665 6.647895 GGATGAAGCAGTTGAAATCATTGTTT 59.352 34.615 0.00 0.00 31.24 2.83
1709 7666 6.831727 TGAAGCAGTTGAAATCATTGTTTG 57.168 33.333 0.00 0.00 0.00 2.93
1710 7667 6.339730 TGAAGCAGTTGAAATCATTGTTTGT 58.660 32.000 0.00 0.00 0.00 2.83
1711 7668 6.256104 TGAAGCAGTTGAAATCATTGTTTGTG 59.744 34.615 0.00 0.00 0.00 3.33
1713 7670 6.339730 AGCAGTTGAAATCATTGTTTGTGAA 58.660 32.000 0.00 0.00 0.00 3.18
1779 7741 2.037901 AGTGGAGAGATGCATCGTGAT 58.962 47.619 20.67 8.25 0.00 3.06
1841 7803 0.698818 GGGGTGTGATTGGAGAAGGT 59.301 55.000 0.00 0.00 0.00 3.50
1923 7885 2.169352 GCAGAGGGTTCATCTTGCTAGA 59.831 50.000 0.00 0.00 34.21 2.43
2024 7994 3.330701 TTGGTTCCCAACTTAGAGCATCT 59.669 43.478 0.00 0.00 43.69 2.90
2123 8095 3.309410 CACCAAAAATGTGCAACTCCAAC 59.691 43.478 0.00 0.00 38.04 3.77
2146 8119 2.571212 TGATGTAAAATAGGGCAGCCG 58.429 47.619 5.00 0.00 0.00 5.52
2210 8204 5.061808 GCAGCACAACAATTTCAAGATCATC 59.938 40.000 0.00 0.00 0.00 2.92
2232 8226 5.509771 TCGCACACATAATCAACAATATGC 58.490 37.500 0.00 0.00 33.71 3.14
2250 8244 7.879160 ACAATATGCCAAATTCAACATCAACTT 59.121 29.630 0.00 0.00 0.00 2.66
2253 8247 5.291178 TGCCAAATTCAACATCAACTTCAG 58.709 37.500 0.00 0.00 0.00 3.02
2328 8322 8.998989 CAAGTAAATACAAACATAATGAGCACG 58.001 33.333 0.00 0.00 0.00 5.34
2331 8325 5.756195 ATACAAACATAATGAGCACGCAT 57.244 34.783 0.00 0.00 0.00 4.73
2657 8665 0.109086 AACGAGTCCAGAGCACATCG 60.109 55.000 0.00 0.00 36.32 3.84
2864 8900 3.673052 CGTTGCACAACCATATCCTTTGG 60.673 47.826 7.88 0.00 38.03 3.28
2866 8902 2.225242 TGCACAACCATATCCTTTGGGT 60.225 45.455 0.00 0.00 38.64 4.51
2958 8995 1.416401 ACAAAGAAGCCTTCCGACTGA 59.584 47.619 0.00 0.00 0.00 3.41
3004 9069 4.321974 GGCGAACCCTCATGAAGAATTTTT 60.322 41.667 0.00 0.00 0.00 1.94
3055 9120 1.359117 CCGTATGTCGCTGATCCGT 59.641 57.895 0.00 0.00 38.35 4.69
3072 9137 1.667236 CGTTGCATGGCTTCCATAGA 58.333 50.000 0.00 0.00 43.15 1.98
3074 9139 2.620115 CGTTGCATGGCTTCCATAGATT 59.380 45.455 0.00 0.00 43.15 2.40
3084 9149 3.432749 GCTTCCATAGATTGACTGCCAGA 60.433 47.826 0.00 0.00 0.00 3.86
3139 9204 0.249489 CAAGCCCGTAGAAGGATCCG 60.249 60.000 5.98 0.00 0.00 4.18
3312 9377 1.088340 ATGAGCAGCAGTAGCGCAAG 61.088 55.000 11.47 0.00 44.59 4.01
3325 9390 3.389741 CGCAAGCAGATCACAAACC 57.610 52.632 0.00 0.00 0.00 3.27
3377 9442 2.124151 GGATGGGATGGCGCAAGT 60.124 61.111 10.83 0.00 40.58 3.16
3393 9458 1.352622 AAGTGAAGTGAGGTGGCCCA 61.353 55.000 0.00 0.00 0.00 5.36
3488 9553 3.665226 CGAGAGCGATCCCGGAGG 61.665 72.222 0.73 0.00 45.34 4.30
3499 9564 4.351054 CCGGAGGCAGGGCTGTTT 62.351 66.667 0.00 0.00 46.14 2.83
3500 9565 2.668632 CGGAGGCAGGGCTGTTTA 59.331 61.111 0.00 0.00 0.00 2.01
3501 9566 1.224592 CGGAGGCAGGGCTGTTTAT 59.775 57.895 0.00 0.00 0.00 1.40
3502 9567 0.394352 CGGAGGCAGGGCTGTTTATT 60.394 55.000 0.00 0.00 0.00 1.40
3503 9568 1.106285 GGAGGCAGGGCTGTTTATTG 58.894 55.000 0.00 0.00 0.00 1.90
3504 9569 1.340991 GGAGGCAGGGCTGTTTATTGA 60.341 52.381 0.00 0.00 0.00 2.57
3505 9570 2.659428 GAGGCAGGGCTGTTTATTGAT 58.341 47.619 0.00 0.00 0.00 2.57
3506 9571 3.026694 GAGGCAGGGCTGTTTATTGATT 58.973 45.455 0.00 0.00 0.00 2.57
3507 9572 2.762327 AGGCAGGGCTGTTTATTGATTG 59.238 45.455 0.00 0.00 0.00 2.67
3508 9573 2.159057 GGCAGGGCTGTTTATTGATTGG 60.159 50.000 0.00 0.00 0.00 3.16
3509 9574 2.760092 GCAGGGCTGTTTATTGATTGGA 59.240 45.455 0.00 0.00 0.00 3.53
3510 9575 3.385755 GCAGGGCTGTTTATTGATTGGAT 59.614 43.478 0.00 0.00 0.00 3.41
3511 9576 4.500375 GCAGGGCTGTTTATTGATTGGATC 60.500 45.833 0.00 0.00 0.00 3.36
3512 9577 4.891756 CAGGGCTGTTTATTGATTGGATCT 59.108 41.667 0.00 0.00 0.00 2.75
3513 9578 4.891756 AGGGCTGTTTATTGATTGGATCTG 59.108 41.667 0.00 0.00 0.00 2.90
3514 9579 4.038402 GGGCTGTTTATTGATTGGATCTGG 59.962 45.833 0.00 0.00 0.00 3.86
3515 9580 4.500375 GGCTGTTTATTGATTGGATCTGGC 60.500 45.833 0.00 0.00 0.00 4.85
3516 9581 4.340381 GCTGTTTATTGATTGGATCTGGCT 59.660 41.667 0.00 0.00 0.00 4.75
3517 9582 5.163478 GCTGTTTATTGATTGGATCTGGCTT 60.163 40.000 0.00 0.00 0.00 4.35
3518 9583 6.628844 GCTGTTTATTGATTGGATCTGGCTTT 60.629 38.462 0.00 0.00 0.00 3.51
3519 9584 7.416664 GCTGTTTATTGATTGGATCTGGCTTTA 60.417 37.037 0.00 0.00 0.00 1.85
3520 9585 8.359875 TGTTTATTGATTGGATCTGGCTTTAA 57.640 30.769 0.00 0.00 0.00 1.52
3521 9586 8.980596 TGTTTATTGATTGGATCTGGCTTTAAT 58.019 29.630 0.00 0.00 0.00 1.40
3522 9587 9.822185 GTTTATTGATTGGATCTGGCTTTAATT 57.178 29.630 0.00 0.00 0.00 1.40
3524 9589 9.820725 TTATTGATTGGATCTGGCTTTAATTTG 57.179 29.630 0.00 0.00 0.00 2.32
3525 9590 7.479352 TTGATTGGATCTGGCTTTAATTTGA 57.521 32.000 0.00 0.00 0.00 2.69
3526 9591 7.479352 TGATTGGATCTGGCTTTAATTTGAA 57.521 32.000 0.00 0.00 0.00 2.69
3527 9592 7.549839 TGATTGGATCTGGCTTTAATTTGAAG 58.450 34.615 0.00 0.00 0.00 3.02
3528 9593 5.329035 TGGATCTGGCTTTAATTTGAAGC 57.671 39.130 15.48 15.48 46.71 3.86
3562 9627 7.819644 TCATAGTTCATGATCCAACAAACAAG 58.180 34.615 0.00 0.00 38.79 3.16
3657 9722 6.766467 TCTTCCATGTCAAGATTCTCATCATG 59.234 38.462 13.30 13.30 30.57 3.07
3668 9733 9.499585 CAAGATTCTCATCATGAAATGTTGTAC 57.500 33.333 14.89 0.00 46.80 2.90
3722 9787 7.012894 AGACAAAATCTTCGGTCACAACATTTA 59.987 33.333 0.00 0.00 31.62 1.40
3867 9941 4.001618 TCATCAAACATGTTGGAGACGA 57.998 40.909 20.10 13.44 0.00 4.20
4455 10529 4.227134 CGCGGTGATCTGGGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
4456 10530 3.866582 GCGGTGATCTGGGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
4457 10531 3.866582 CGGTGATCTGGGGGAGGC 61.867 72.222 0.00 0.00 0.00 4.70
4458 10532 2.692368 GGTGATCTGGGGGAGGCA 60.692 66.667 0.00 0.00 0.00 4.75
4459 10533 2.081161 GGTGATCTGGGGGAGGCAT 61.081 63.158 0.00 0.00 0.00 4.40
4460 10534 1.150081 GTGATCTGGGGGAGGCATG 59.850 63.158 0.00 0.00 0.00 4.06
4461 10535 2.080536 TGATCTGGGGGAGGCATGG 61.081 63.158 0.00 0.00 0.00 3.66
4462 10536 3.504204 GATCTGGGGGAGGCATGGC 62.504 68.421 12.14 12.14 0.00 4.40
4541 10623 2.038813 GGGGTCCATGGGGTTTGG 59.961 66.667 13.02 0.00 35.45 3.28
4585 10674 1.896660 GCGGTGGGAAGTTTCAGCA 60.897 57.895 9.09 0.00 0.00 4.41
4653 10964 2.071540 CTGAAGCAGCAGTTCATCGAA 58.928 47.619 0.00 0.00 33.49 3.71
4654 10965 2.481568 CTGAAGCAGCAGTTCATCGAAA 59.518 45.455 0.00 0.00 33.49 3.46
4676 10987 5.499004 ACCACTTTAGAGGAGCAACATAA 57.501 39.130 0.00 0.00 0.00 1.90
4709 11027 2.104111 CGAGCTACCCCCATCATTAACA 59.896 50.000 0.00 0.00 0.00 2.41
4731 11049 5.047377 ACAGAAACAATGGTCACACAAAAGT 60.047 36.000 0.00 0.00 0.00 2.66
4790 11108 0.673644 CAGGAAACCCACTGCCTACG 60.674 60.000 0.00 0.00 0.00 3.51
4818 11140 6.055588 CGGACACAGGTTATAGGATGAAAAT 58.944 40.000 0.00 0.00 0.00 1.82
4877 11199 5.521735 AGCGCTAACAGTCTTGATTTGATAG 59.478 40.000 8.99 0.00 0.00 2.08
4893 11215 9.394767 TGATTTGATAGTTTTTCTGCTATGCTA 57.605 29.630 0.00 0.00 0.00 3.49
4954 11276 3.614092 TCATCAAGGGAACTCTTGCATC 58.386 45.455 9.30 0.00 42.68 3.91
4988 11310 7.497249 GGACAATATGATAGCTATGTGATTCCC 59.503 40.741 11.94 7.00 0.00 3.97
5007 11329 5.389859 TCCCGTTCGAGAATAAAGTGTTA 57.610 39.130 0.00 0.00 0.00 2.41
5079 11401 2.095567 CACATGCTACTGGAACTTGCAC 60.096 50.000 0.00 0.00 36.44 4.57
5108 11430 8.155510 TGAGAAATTAGATCTGAATGCTATGCT 58.844 33.333 5.18 0.00 0.00 3.79
5330 11655 3.374042 TGGAGAAACACAAAGTCCCAA 57.626 42.857 0.00 0.00 0.00 4.12
5931 12262 1.142262 AGTGTTGGCCGACTAAAAGGT 59.858 47.619 23.87 0.00 0.00 3.50
5936 12267 1.270625 TGGCCGACTAAAAGGTGACAG 60.271 52.381 0.00 0.00 0.00 3.51
5964 12295 0.249398 GTTAGGTGTGGCGGAGATGT 59.751 55.000 0.00 0.00 0.00 3.06
5979 12310 4.384056 GGAGATGTGTATGTTGAGATGGG 58.616 47.826 0.00 0.00 0.00 4.00
6006 12337 0.839946 CCACCCGAGGAAGGATTGAT 59.160 55.000 0.00 0.00 0.00 2.57
6024 12355 8.915057 GGATTGATTCCGGAATGATGATATAT 57.085 34.615 33.84 14.70 33.93 0.86
6030 12361 9.775854 GATTCCGGAATGATGATATATGAGATT 57.224 33.333 33.84 4.00 0.00 2.40
6073 12404 3.777106 AGAGAAGCTTGTCCAACATCA 57.223 42.857 19.26 0.00 0.00 3.07
6075 12406 5.426689 AGAGAAGCTTGTCCAACATCATA 57.573 39.130 19.26 0.00 0.00 2.15
6246 12577 7.201920 GGAGTATCACCAAAGAACTAGCTATGA 60.202 40.741 0.00 0.00 36.25 2.15
6250 12581 6.530120 TCACCAAAGAACTAGCTATGAACAA 58.470 36.000 0.00 0.00 0.00 2.83
6254 12585 4.762289 AGAACTAGCTATGAACAAGGGG 57.238 45.455 0.00 0.00 0.00 4.79
6430 12761 6.854496 TTCTGTTTAGCGTGTTGATACTTT 57.146 33.333 0.00 0.00 0.00 2.66
6514 12910 8.644374 ATGCTTTTACCAAAGGAACATTACTA 57.356 30.769 0.00 0.00 42.95 1.82
6612 13008 6.206829 GCTCTTGTTTATCTGGTTTTAGTGGT 59.793 38.462 0.00 0.00 0.00 4.16
6787 13221 7.466746 AATAAAACCTTGCTAAGAGATTGCA 57.533 32.000 0.00 0.00 38.02 4.08
6824 13258 6.531923 AGATCTGCTGCACTGTATGATATTT 58.468 36.000 0.00 0.00 0.00 1.40
6880 13314 6.128553 ACGTAATTGCTGTTTGTGTAGATCAG 60.129 38.462 0.00 0.00 0.00 2.90
7163 13601 2.790387 GGCAACAAATCTGATCTTCGC 58.210 47.619 0.00 0.00 0.00 4.70
7274 13712 4.084537 ACAAATGTAGACAACGCTTTCTCG 60.085 41.667 0.00 0.00 0.00 4.04
7364 13802 4.303257 CCGAGCAAAGGGGAGAAC 57.697 61.111 0.00 0.00 0.00 3.01
7458 13896 9.929722 CATTATTATTTGCTGCGTTTTCTACTA 57.070 29.630 0.00 0.00 0.00 1.82
7600 14079 7.060600 TGATATTCTGCGAGTACTTTGTTTG 57.939 36.000 0.00 0.00 0.00 2.93
7629 14108 5.366186 AGGATCTGAGCAATATCTCACTGTT 59.634 40.000 0.00 0.00 38.11 3.16
7646 14125 9.567776 TCTCACTGTTTATTTTTATCAGAACCA 57.432 29.630 0.00 0.00 0.00 3.67
7649 14128 9.912634 CACTGTTTATTTTTATCAGAACCATGT 57.087 29.630 0.00 0.00 0.00 3.21
7661 14140 9.562408 TTATCAGAACCATGTACTTTGTTTACA 57.438 29.630 0.00 0.00 34.00 2.41
7665 14144 8.280497 CAGAACCATGTACTTTGTTTACAGTAC 58.720 37.037 3.04 3.04 43.91 2.73
7702 14181 9.797556 TGTAATGTACAGTATTATGACAGACAC 57.202 33.333 6.28 0.00 34.06 3.67
7720 14203 2.221169 CACAGAAAGTACAAGCAGGCA 58.779 47.619 0.00 0.00 0.00 4.75
7798 14282 6.063404 ACAGGCAAATTTGAACATTTCCATT 58.937 32.000 22.31 0.25 0.00 3.16
7884 14451 5.449304 AGCTGACGCAACAGTATTAAAAAC 58.551 37.500 8.54 0.00 39.73 2.43
7925 14494 6.642540 CCCATAACTCAAGAAGAAACAAAAGC 59.357 38.462 0.00 0.00 0.00 3.51
7931 14500 5.510671 TCAAGAAGAAACAAAAGCGATCAC 58.489 37.500 0.00 0.00 0.00 3.06
7967 14541 5.705609 TGTTAAACTGGCCTCTGAATTTC 57.294 39.130 3.32 0.00 0.00 2.17
7976 14550 1.740025 CCTCTGAATTTCGGCACTTCC 59.260 52.381 0.00 0.00 0.00 3.46
7977 14551 2.426522 CTCTGAATTTCGGCACTTCCA 58.573 47.619 0.00 0.00 34.01 3.53
7978 14552 3.012518 CTCTGAATTTCGGCACTTCCAT 58.987 45.455 0.00 0.00 34.01 3.41
7979 14553 2.749076 TCTGAATTTCGGCACTTCCATG 59.251 45.455 0.00 0.00 34.01 3.66
7980 14554 2.749076 CTGAATTTCGGCACTTCCATGA 59.251 45.455 0.00 0.00 34.01 3.07
7983 14557 4.220382 TGAATTTCGGCACTTCCATGATTT 59.780 37.500 0.00 0.00 34.01 2.17
7984 14558 3.848272 TTTCGGCACTTCCATGATTTC 57.152 42.857 0.00 0.00 34.01 2.17
7988 14562 3.826157 TCGGCACTTCCATGATTTCTTTT 59.174 39.130 0.00 0.00 34.01 2.27
8014 14588 5.971895 TTGAAGCAAATCAAAAGACTTGC 57.028 34.783 3.73 3.73 43.56 4.01
8015 14589 4.370917 TGAAGCAAATCAAAAGACTTGCC 58.629 39.130 7.88 0.00 44.14 4.52
8016 14590 4.141981 TGAAGCAAATCAAAAGACTTGCCA 60.142 37.500 7.88 0.00 44.14 4.92
8017 14591 4.612264 AGCAAATCAAAAGACTTGCCAT 57.388 36.364 7.88 0.00 44.14 4.40
8018 14592 4.964593 AGCAAATCAAAAGACTTGCCATT 58.035 34.783 7.88 0.00 44.14 3.16
8019 14593 5.370679 AGCAAATCAAAAGACTTGCCATTT 58.629 33.333 7.88 0.00 44.14 2.32
8020 14594 5.467735 AGCAAATCAAAAGACTTGCCATTTC 59.532 36.000 7.88 0.00 44.14 2.17
8021 14595 5.236911 GCAAATCAAAAGACTTGCCATTTCA 59.763 36.000 0.63 0.00 38.56 2.69
8022 14596 6.072893 GCAAATCAAAAGACTTGCCATTTCAT 60.073 34.615 0.63 0.00 38.56 2.57
8023 14597 7.520937 GCAAATCAAAAGACTTGCCATTTCATT 60.521 33.333 0.63 0.00 38.56 2.57
8024 14598 7.429636 AATCAAAAGACTTGCCATTTCATTG 57.570 32.000 0.00 0.00 0.00 2.82
8025 14599 6.159299 TCAAAAGACTTGCCATTTCATTGA 57.841 33.333 0.00 0.00 0.00 2.57
8026 14600 6.761312 TCAAAAGACTTGCCATTTCATTGAT 58.239 32.000 0.00 0.00 0.00 2.57
8027 14601 7.218614 TCAAAAGACTTGCCATTTCATTGATT 58.781 30.769 0.00 0.00 0.00 2.57
8028 14602 8.366401 TCAAAAGACTTGCCATTTCATTGATTA 58.634 29.630 0.00 0.00 0.00 1.75
8029 14603 8.991026 CAAAAGACTTGCCATTTCATTGATTAA 58.009 29.630 0.00 0.00 0.00 1.40
8030 14604 8.767478 AAAGACTTGCCATTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
8031 14605 6.870769 AGACTTGCCATTTCATTGATTAAGG 58.129 36.000 0.00 0.00 0.00 2.69
8032 14606 6.664816 AGACTTGCCATTTCATTGATTAAGGA 59.335 34.615 0.00 0.00 0.00 3.36
8033 14607 7.178983 AGACTTGCCATTTCATTGATTAAGGAA 59.821 33.333 0.00 0.00 35.06 3.36
8034 14608 7.325694 ACTTGCCATTTCATTGATTAAGGAAG 58.674 34.615 0.00 6.85 37.80 3.46
8035 14609 7.178983 ACTTGCCATTTCATTGATTAAGGAAGA 59.821 33.333 12.29 0.00 37.80 2.87
8036 14610 6.866480 TGCCATTTCATTGATTAAGGAAGAC 58.134 36.000 0.00 0.00 37.80 3.01
8037 14611 5.973565 GCCATTTCATTGATTAAGGAAGACG 59.026 40.000 0.00 0.00 37.80 4.18
8038 14612 6.404734 GCCATTTCATTGATTAAGGAAGACGT 60.405 38.462 0.00 0.00 37.80 4.34
8039 14613 7.538575 CCATTTCATTGATTAAGGAAGACGTT 58.461 34.615 0.00 0.00 37.80 3.99
8040 14614 8.028938 CCATTTCATTGATTAAGGAAGACGTTT 58.971 33.333 0.00 0.00 37.80 3.60
8041 14615 9.410556 CATTTCATTGATTAAGGAAGACGTTTT 57.589 29.630 0.00 0.00 37.80 2.43
8042 14616 9.981114 ATTTCATTGATTAAGGAAGACGTTTTT 57.019 25.926 0.00 0.00 37.80 1.94
8073 14647 4.442706 AGGCACTTCCACAATATTACTCG 58.557 43.478 0.00 0.00 37.29 4.18
8074 14648 4.161565 AGGCACTTCCACAATATTACTCGA 59.838 41.667 0.00 0.00 37.29 4.04
8075 14649 5.057149 GGCACTTCCACAATATTACTCGAT 58.943 41.667 0.00 0.00 34.01 3.59
8076 14650 5.527582 GGCACTTCCACAATATTACTCGATT 59.472 40.000 0.00 0.00 34.01 3.34
8077 14651 6.704493 GGCACTTCCACAATATTACTCGATTA 59.296 38.462 0.00 0.00 34.01 1.75
8078 14652 7.387948 GGCACTTCCACAATATTACTCGATTAT 59.612 37.037 0.00 0.00 34.01 1.28
8079 14653 8.774586 GCACTTCCACAATATTACTCGATTATT 58.225 33.333 0.00 0.00 0.00 1.40
8092 14666 9.627395 ATTACTCGATTATTAAGACCTGAATCG 57.373 33.333 8.59 8.59 46.34 3.34
8093 14667 6.448006 ACTCGATTATTAAGACCTGAATCGG 58.552 40.000 13.47 8.20 45.50 4.18
8094 14668 6.040616 ACTCGATTATTAAGACCTGAATCGGT 59.959 38.462 13.47 8.69 45.50 4.69
8095 14669 6.213677 TCGATTATTAAGACCTGAATCGGTG 58.786 40.000 13.47 0.00 45.50 4.94
8096 14670 6.040054 TCGATTATTAAGACCTGAATCGGTGA 59.960 38.462 13.47 0.00 45.50 4.02
8097 14671 6.868864 CGATTATTAAGACCTGAATCGGTGAT 59.131 38.462 7.28 0.00 43.09 3.06
8098 14672 7.385205 CGATTATTAAGACCTGAATCGGTGATT 59.615 37.037 7.28 0.00 43.09 2.57
8099 14673 8.980481 ATTATTAAGACCTGAATCGGTGATTT 57.020 30.769 1.79 0.00 37.42 2.17
8100 14674 6.683974 ATTAAGACCTGAATCGGTGATTTG 57.316 37.500 1.79 0.00 37.42 2.32
8101 14675 3.703001 AGACCTGAATCGGTGATTTGT 57.297 42.857 1.79 0.00 37.42 2.83
8102 14676 4.021102 AGACCTGAATCGGTGATTTGTT 57.979 40.909 1.79 0.00 37.42 2.83
8103 14677 4.398319 AGACCTGAATCGGTGATTTGTTT 58.602 39.130 1.79 0.00 37.42 2.83
8104 14678 4.827284 AGACCTGAATCGGTGATTTGTTTT 59.173 37.500 1.79 0.00 37.42 2.43
8105 14679 5.301805 AGACCTGAATCGGTGATTTGTTTTT 59.698 36.000 1.79 0.00 37.42 1.94
8205 14779 2.099592 AGGTTTCACTTGTGCACATGTG 59.900 45.455 39.85 39.85 46.88 3.21
8211 14785 3.374220 ACTTGTGCACATGTGAAATGG 57.626 42.857 30.92 16.51 33.67 3.16
8212 14786 2.694628 ACTTGTGCACATGTGAAATGGT 59.305 40.909 30.92 17.12 33.67 3.55
8213 14787 3.888323 ACTTGTGCACATGTGAAATGGTA 59.112 39.130 30.92 8.25 33.67 3.25
8214 14788 4.022935 ACTTGTGCACATGTGAAATGGTAG 60.023 41.667 30.92 18.50 33.67 3.18
8215 14789 2.819019 TGTGCACATGTGAAATGGTAGG 59.181 45.455 29.80 0.00 0.00 3.18
8216 14790 3.081061 GTGCACATGTGAAATGGTAGGA 58.919 45.455 29.80 0.00 0.00 2.94
8217 14791 3.081061 TGCACATGTGAAATGGTAGGAC 58.919 45.455 29.80 7.34 0.00 3.85
8218 14792 2.423538 GCACATGTGAAATGGTAGGACC 59.576 50.000 29.80 2.76 39.22 4.46
8219 14793 3.016736 CACATGTGAAATGGTAGGACCC 58.983 50.000 21.64 0.00 37.50 4.46
8220 14794 2.025321 ACATGTGAAATGGTAGGACCCC 60.025 50.000 0.00 0.00 37.50 4.95
8221 14795 0.996583 TGTGAAATGGTAGGACCCCC 59.003 55.000 0.00 0.00 37.50 5.40
8222 14796 1.296002 GTGAAATGGTAGGACCCCCT 58.704 55.000 0.00 0.00 46.62 4.79
8223 14797 1.212195 GTGAAATGGTAGGACCCCCTC 59.788 57.143 0.00 0.00 43.14 4.30
8239 14819 4.215109 CCCCCTCCTTAACAAATGTATGG 58.785 47.826 0.00 0.00 0.00 2.74
8241 14821 4.277476 CCCTCCTTAACAAATGTATGGCA 58.723 43.478 0.00 0.00 0.00 4.92
8303 14883 9.823647 ACATTTTGGTACAGAGAGAGTATTATG 57.176 33.333 0.00 0.00 42.39 1.90
8318 14898 9.278734 GAGAGTATTATGTTTGCACTTTTTAGC 57.721 33.333 0.00 0.00 0.00 3.09
8337 14917 2.943653 CGTGTTTCGAAGTGGGGC 59.056 61.111 0.00 0.00 42.86 5.80
8343 14923 1.701031 TTTCGAAGTGGGGCTGTGGA 61.701 55.000 0.00 0.00 0.00 4.02
8366 14950 4.454504 AGGGTCACGTAATTAGCAAAACAG 59.545 41.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.604378 CCCTCCAGACTTTGCCGAT 59.396 57.895 0.00 0.00 0.00 4.18
37 38 1.804748 CGTTTTCCCCTCCTTTTCTCG 59.195 52.381 0.00 0.00 0.00 4.04
41 42 1.617322 GAGCGTTTTCCCCTCCTTTT 58.383 50.000 0.00 0.00 0.00 2.27
45 46 2.436115 CCGAGCGTTTTCCCCTCC 60.436 66.667 0.00 0.00 0.00 4.30
130 133 6.592607 TCCCATGAACGTGTAGAAAAATACTC 59.407 38.462 0.00 0.00 0.00 2.59
236 242 1.806758 CCCCGAATACGCGACGTTT 60.807 57.895 15.93 0.00 41.54 3.60
277 777 2.737180 CATCCACGGGATCTCGGG 59.263 66.667 21.07 16.55 40.98 5.14
297 797 2.096713 GCGAGCCGAATCAATATCACAC 60.097 50.000 0.00 0.00 0.00 3.82
599 1109 3.878519 CGACGCCTCCTCCTCGTC 61.879 72.222 4.18 4.18 46.23 4.20
717 1227 4.019231 AGAGCCTTTTTATCGTTCCCTTCT 60.019 41.667 0.00 0.00 0.00 2.85
739 1483 5.778161 TGCGACTATGACAATAAACACAG 57.222 39.130 0.00 0.00 0.00 3.66
750 1494 7.149288 GCGATTTTATGATTTTGCGACTATGAC 60.149 37.037 0.00 0.00 0.00 3.06
751 1495 6.850823 GCGATTTTATGATTTTGCGACTATGA 59.149 34.615 0.00 0.00 0.00 2.15
752 1496 6.632434 TGCGATTTTATGATTTTGCGACTATG 59.368 34.615 0.00 0.00 0.00 2.23
756 1500 4.204978 CCTGCGATTTTATGATTTTGCGAC 59.795 41.667 0.00 0.00 0.00 5.19
773 3062 2.361104 GCATGAAACCCCCTGCGA 60.361 61.111 0.00 0.00 0.00 5.10
782 3071 2.046313 CGCTGTTCTTGTGCATGAAAC 58.954 47.619 0.00 0.00 0.00 2.78
837 3126 0.763652 ACTGGCTGCTGCTATGCTAT 59.236 50.000 15.64 0.00 39.59 2.97
838 3127 0.543277 AACTGGCTGCTGCTATGCTA 59.457 50.000 15.64 0.15 39.59 3.49
839 3128 0.747283 GAACTGGCTGCTGCTATGCT 60.747 55.000 15.64 0.00 39.59 3.79
840 3129 1.028330 TGAACTGGCTGCTGCTATGC 61.028 55.000 15.64 2.77 39.59 3.14
841 3130 0.731417 GTGAACTGGCTGCTGCTATG 59.269 55.000 15.64 8.23 39.59 2.23
842 3131 0.325933 TGTGAACTGGCTGCTGCTAT 59.674 50.000 15.64 0.00 39.59 2.97
945 3234 2.185350 CCCGACCTGCTAGTGCTG 59.815 66.667 0.00 0.00 40.48 4.41
1027 3318 3.885521 GTAGTCGTCCTCCGCCCG 61.886 72.222 0.00 0.00 36.19 6.13
1221 3512 2.681778 CACCTCTCCTGACCGGCT 60.682 66.667 0.00 0.00 0.00 5.52
1227 3518 0.902048 CAGGCAGTCACCTCTCCTGA 60.902 60.000 0.53 0.00 45.31 3.86
1301 3592 4.948621 ACTACTACTACCGATTTGAGCAGT 59.051 41.667 0.00 0.00 0.00 4.40
1314 3605 6.310224 GGCGAGCATACTACTACTACTACTAC 59.690 46.154 0.00 0.00 0.00 2.73
1315 3606 6.015095 TGGCGAGCATACTACTACTACTACTA 60.015 42.308 0.00 0.00 0.00 1.82
1316 3607 5.221601 TGGCGAGCATACTACTACTACTACT 60.222 44.000 0.00 0.00 0.00 2.57
1317 3608 4.993584 TGGCGAGCATACTACTACTACTAC 59.006 45.833 0.00 0.00 0.00 2.73
1318 3609 5.219343 TGGCGAGCATACTACTACTACTA 57.781 43.478 0.00 0.00 0.00 1.82
1319 3610 4.066490 CTGGCGAGCATACTACTACTACT 58.934 47.826 0.00 0.00 0.00 2.57
1320 3611 3.814283 ACTGGCGAGCATACTACTACTAC 59.186 47.826 0.00 0.00 0.00 2.73
1321 3612 4.082665 ACTGGCGAGCATACTACTACTA 57.917 45.455 0.00 0.00 0.00 1.82
1322 3613 2.933573 ACTGGCGAGCATACTACTACT 58.066 47.619 0.00 0.00 0.00 2.57
1323 3614 4.379603 CCATACTGGCGAGCATACTACTAC 60.380 50.000 0.00 0.00 0.00 2.73
1324 3615 3.756963 CCATACTGGCGAGCATACTACTA 59.243 47.826 0.00 0.00 0.00 1.82
1325 3616 2.558795 CCATACTGGCGAGCATACTACT 59.441 50.000 0.00 0.00 0.00 2.57
1470 3773 2.534298 CAAGATCGTCTACACTGGCAG 58.466 52.381 14.16 14.16 0.00 4.85
1478 3781 4.731193 GCACACTCTACCAAGATCGTCTAC 60.731 50.000 0.00 0.00 0.00 2.59
1626 3930 1.810151 TCCCAAGCGCTAAATCACAAC 59.190 47.619 12.05 0.00 0.00 3.32
1708 7665 5.979993 TGAAACTACAACCACTAGTTCACA 58.020 37.500 0.00 0.00 36.18 3.58
1709 7666 6.929606 AGATGAAACTACAACCACTAGTTCAC 59.070 38.462 0.00 0.00 36.18 3.18
1710 7667 7.062749 AGATGAAACTACAACCACTAGTTCA 57.937 36.000 0.00 0.00 36.18 3.18
1711 7668 7.964604 AAGATGAAACTACAACCACTAGTTC 57.035 36.000 0.00 0.00 36.18 3.01
1713 7670 7.506114 TGAAAGATGAAACTACAACCACTAGT 58.494 34.615 0.00 0.00 0.00 2.57
1779 7741 2.230992 GCTGGTGCACAATCCAACAATA 59.769 45.455 20.43 0.00 39.41 1.90
1841 7803 5.554437 TCCAATACTTGTGACACACCTTA 57.446 39.130 8.05 0.14 32.73 2.69
1923 7885 6.377429 TCAATGACTAAGTTCTACCGTGAGAT 59.623 38.462 0.00 0.00 0.00 2.75
2054 8024 9.005777 GTGATGTAATTTTACTCCAACCACTTA 57.994 33.333 2.45 0.00 34.77 2.24
2110 8082 1.805943 CATCATCGTTGGAGTTGCACA 59.194 47.619 0.00 0.00 0.00 4.57
2123 8095 3.189287 GGCTGCCCTATTTTACATCATCG 59.811 47.826 7.66 0.00 0.00 3.84
2151 8124 0.250038 TCATCTATTGGAGCGGCTGC 60.250 55.000 15.13 15.13 43.24 5.25
2210 8204 4.676471 GGCATATTGTTGATTATGTGTGCG 59.324 41.667 0.00 0.00 0.00 5.34
2232 8226 9.350357 CTTATCTGAAGTTGATGTTGAATTTGG 57.650 33.333 0.00 0.00 0.00 3.28
2250 8244 7.094805 CCATCCTTTGTCGAAAAACTTATCTGA 60.095 37.037 0.00 0.00 0.00 3.27
2253 8247 7.141100 TCCATCCTTTGTCGAAAAACTTATC 57.859 36.000 0.00 0.00 0.00 1.75
2328 8322 1.670406 CTATGCAGAGGCCGGATGC 60.670 63.158 19.26 19.26 40.13 3.91
2331 8325 1.152546 TAGCTATGCAGAGGCCGGA 60.153 57.895 5.05 0.00 40.13 5.14
2394 8392 6.430925 TCTTGTATGACTTTGCTATTTGCTGT 59.569 34.615 0.00 0.00 43.37 4.40
2657 8665 1.067354 CCTTGTTGAAGGCATTGCTCC 60.067 52.381 8.82 0.00 42.60 4.70
2864 8900 3.620488 TCTATGGACAATGGCTTGAACC 58.380 45.455 4.13 7.01 36.20 3.62
2866 8902 4.098349 GCAATCTATGGACAATGGCTTGAA 59.902 41.667 4.13 0.00 36.20 2.69
2958 8995 1.681076 GTACCGATGGTGTGGGGTT 59.319 57.895 0.00 0.00 36.19 4.11
3004 9069 2.115052 AGATTGCGGTGGCCACAA 59.885 55.556 35.78 22.62 38.85 3.33
3055 9120 3.633525 GTCAATCTATGGAAGCCATGCAA 59.366 43.478 9.14 0.00 44.84 4.08
3084 9149 4.362479 GCCTTGGGCCTGCTATTT 57.638 55.556 4.53 0.00 44.06 1.40
3139 9204 1.405469 GCAACGGATGCGATTTGTGC 61.405 55.000 15.49 10.54 46.87 4.57
3279 9344 4.337274 TGCTGCTCATCAATGATAGTTTGG 59.663 41.667 0.00 0.00 36.02 3.28
3312 9377 1.133790 GGCATCTGGTTTGTGATCTGC 59.866 52.381 0.00 0.00 0.00 4.26
3325 9390 1.597302 CGATCTGGCCTGGCATCTG 60.597 63.158 22.05 8.18 0.00 2.90
3377 9442 2.836154 GTGGGCCACCTCACTTCA 59.164 61.111 26.51 0.00 37.76 3.02
3482 9547 2.270874 ATAAACAGCCCTGCCTCCGG 62.271 60.000 0.00 0.00 0.00 5.14
3483 9548 0.394352 AATAAACAGCCCTGCCTCCG 60.394 55.000 0.00 0.00 0.00 4.63
3484 9549 1.106285 CAATAAACAGCCCTGCCTCC 58.894 55.000 0.00 0.00 0.00 4.30
3485 9550 2.128771 TCAATAAACAGCCCTGCCTC 57.871 50.000 0.00 0.00 0.00 4.70
3486 9551 2.762327 CAATCAATAAACAGCCCTGCCT 59.238 45.455 0.00 0.00 0.00 4.75
3487 9552 2.159057 CCAATCAATAAACAGCCCTGCC 60.159 50.000 0.00 0.00 0.00 4.85
3488 9553 2.760092 TCCAATCAATAAACAGCCCTGC 59.240 45.455 0.00 0.00 0.00 4.85
3489 9554 4.891756 AGATCCAATCAATAAACAGCCCTG 59.108 41.667 0.00 0.00 0.00 4.45
3490 9555 4.891756 CAGATCCAATCAATAAACAGCCCT 59.108 41.667 0.00 0.00 0.00 5.19
3491 9556 4.038402 CCAGATCCAATCAATAAACAGCCC 59.962 45.833 0.00 0.00 0.00 5.19
3492 9557 4.500375 GCCAGATCCAATCAATAAACAGCC 60.500 45.833 0.00 0.00 0.00 4.85
3493 9558 4.340381 AGCCAGATCCAATCAATAAACAGC 59.660 41.667 0.00 0.00 0.00 4.40
3494 9559 6.461110 AAGCCAGATCCAATCAATAAACAG 57.539 37.500 0.00 0.00 0.00 3.16
3495 9560 6.855763 AAAGCCAGATCCAATCAATAAACA 57.144 33.333 0.00 0.00 0.00 2.83
3496 9561 9.822185 AATTAAAGCCAGATCCAATCAATAAAC 57.178 29.630 0.00 0.00 0.00 2.01
3498 9563 9.820725 CAAATTAAAGCCAGATCCAATCAATAA 57.179 29.630 0.00 0.00 0.00 1.40
3499 9564 9.199645 TCAAATTAAAGCCAGATCCAATCAATA 57.800 29.630 0.00 0.00 0.00 1.90
3500 9565 8.081517 TCAAATTAAAGCCAGATCCAATCAAT 57.918 30.769 0.00 0.00 0.00 2.57
3501 9566 7.479352 TCAAATTAAAGCCAGATCCAATCAA 57.521 32.000 0.00 0.00 0.00 2.57
3502 9567 7.479352 TTCAAATTAAAGCCAGATCCAATCA 57.521 32.000 0.00 0.00 0.00 2.57
3503 9568 6.478016 GCTTCAAATTAAAGCCAGATCCAATC 59.522 38.462 12.35 0.00 42.63 2.67
3504 9569 6.070653 TGCTTCAAATTAAAGCCAGATCCAAT 60.071 34.615 17.98 0.00 46.81 3.16
3505 9570 5.245751 TGCTTCAAATTAAAGCCAGATCCAA 59.754 36.000 17.98 0.54 46.81 3.53
3506 9571 4.771577 TGCTTCAAATTAAAGCCAGATCCA 59.228 37.500 17.98 1.10 46.81 3.41
3507 9572 5.329035 TGCTTCAAATTAAAGCCAGATCC 57.671 39.130 17.98 0.00 46.81 3.36
3508 9573 7.656707 TTTTGCTTCAAATTAAAGCCAGATC 57.343 32.000 17.98 0.00 46.81 2.75
3544 9609 4.022935 GCACTCTTGTTTGTTGGATCATGA 60.023 41.667 0.00 0.00 0.00 3.07
3657 9722 6.781138 TCGCAAGAATATGGTACAACATTTC 58.219 36.000 0.00 0.00 45.37 2.17
3722 9787 4.276431 TGATGACACATTTATGCGCATGAT 59.724 37.500 32.48 21.89 0.00 2.45
3834 9908 7.851822 ACATGTTTGATGAAATGTCGTAAAC 57.148 32.000 0.00 0.00 0.00 2.01
3838 9912 5.009510 TCCAACATGTTTGATGAAATGTCGT 59.990 36.000 8.77 0.00 32.20 4.34
3851 9925 1.812571 GCCATCGTCTCCAACATGTTT 59.187 47.619 8.77 0.00 0.00 2.83
3885 9959 2.771762 GGCCATGGAGGAGGAGCT 60.772 66.667 18.40 0.00 41.22 4.09
3909 9983 2.370445 CCCGATCACCTCAAGCCCT 61.370 63.158 0.00 0.00 0.00 5.19
3976 10050 3.175724 CTGCTTCTGCTGCTTCGG 58.824 61.111 0.00 0.00 40.48 4.30
4046 10120 4.704833 GGCTCGAAGTGGCTGCCA 62.705 66.667 19.30 19.30 43.35 4.92
4054 10128 2.932234 CGTGGTGGAGGCTCGAAGT 61.932 63.158 8.69 0.00 0.00 3.01
4438 10512 4.227134 CTCCCCCAGATCACCGCG 62.227 72.222 0.00 0.00 0.00 6.46
4439 10513 3.866582 CCTCCCCCAGATCACCGC 61.867 72.222 0.00 0.00 0.00 5.68
4440 10514 3.866582 GCCTCCCCCAGATCACCG 61.867 72.222 0.00 0.00 0.00 4.94
4441 10515 2.081161 ATGCCTCCCCCAGATCACC 61.081 63.158 0.00 0.00 0.00 4.02
4442 10516 1.150081 CATGCCTCCCCCAGATCAC 59.850 63.158 0.00 0.00 0.00 3.06
4443 10517 2.080536 CCATGCCTCCCCCAGATCA 61.081 63.158 0.00 0.00 0.00 2.92
4444 10518 2.842058 CCATGCCTCCCCCAGATC 59.158 66.667 0.00 0.00 0.00 2.75
4445 10519 3.505773 GCCATGCCTCCCCCAGAT 61.506 66.667 0.00 0.00 0.00 2.90
4523 10605 2.362375 CAAACCCCATGGACCCCG 60.362 66.667 15.22 0.00 34.81 5.73
4541 10623 4.410400 CTTCCCGCCTCCCACCAC 62.410 72.222 0.00 0.00 0.00 4.16
4565 10654 1.073199 CTGAAACTTCCCACCGCCT 59.927 57.895 0.00 0.00 0.00 5.52
4604 10693 2.575694 AGACAGCTAGCTGATCAACG 57.424 50.000 43.42 21.13 46.30 4.10
4605 10694 2.351111 GCAAGACAGCTAGCTGATCAAC 59.649 50.000 43.42 27.10 46.30 3.18
4645 10956 5.477607 TCCTCTAAAGTGGTTTCGATGAA 57.522 39.130 0.00 0.00 0.00 2.57
4653 10964 3.857157 TGTTGCTCCTCTAAAGTGGTT 57.143 42.857 0.00 0.00 0.00 3.67
4654 10965 5.499004 TTATGTTGCTCCTCTAAAGTGGT 57.501 39.130 0.00 0.00 0.00 4.16
4709 11027 5.659440 ACTTTTGTGTGACCATTGTTTCT 57.341 34.783 0.00 0.00 0.00 2.52
4731 11049 4.446311 GCTCCTTATTTTCTGCATCCCCTA 60.446 45.833 0.00 0.00 0.00 3.53
4790 11108 1.068741 CCTATAACCTGTGTCCGAGCC 59.931 57.143 0.00 0.00 0.00 4.70
4818 11140 5.255687 TGCTCCTTATTTTCTGCAATCAGA 58.744 37.500 0.00 0.00 46.90 3.27
4877 11199 9.922305 CTAGTAAACATAGCATAGCAGAAAAAC 57.078 33.333 0.00 0.00 0.00 2.43
4945 11267 6.879276 ATTGTCCTATCAATGATGCAAGAG 57.121 37.500 5.91 0.00 36.78 2.85
4988 11310 7.752239 TCCTAGTTAACACTTTATTCTCGAACG 59.248 37.037 8.61 0.00 34.06 3.95
5007 11329 5.367945 TTTGTGAGACCTGTTTCCTAGTT 57.632 39.130 0.00 0.00 0.00 2.24
5108 11430 5.665360 TGGATGATTGTCTCCCATTACAGTA 59.335 40.000 0.00 0.00 0.00 2.74
5330 11655 6.012858 TCCTTGATGAGGGTAATGTACTTTGT 60.013 38.462 4.33 0.00 46.31 2.83
5605 11936 6.271624 AGTTCTACTAAGCCTAAACCCTTTCA 59.728 38.462 0.00 0.00 0.00 2.69
5892 12223 1.739466 CTCAGCGCCATACAACATTGT 59.261 47.619 2.29 2.32 44.86 2.71
5931 12262 3.199071 ACACCTAACTGTTGAACCTGTCA 59.801 43.478 2.69 0.00 0.00 3.58
5936 12267 1.607148 GCCACACCTAACTGTTGAACC 59.393 52.381 2.69 0.00 0.00 3.62
5964 12295 3.558958 CCACACACCCATCTCAACATACA 60.559 47.826 0.00 0.00 0.00 2.29
5991 12322 1.541233 CCGGAATCAATCCTTCCTCGG 60.541 57.143 0.00 0.00 46.98 4.63
6006 12337 8.761689 TCAATCTCATATATCATCATTCCGGAA 58.238 33.333 21.37 21.37 0.00 4.30
6024 12355 2.027192 GTGCTACCCCAACTCAATCTCA 60.027 50.000 0.00 0.00 0.00 3.27
6030 12361 1.072266 ATTGGTGCTACCCCAACTCA 58.928 50.000 0.00 0.00 44.36 3.41
6073 12404 5.015497 TGGATATGCCCAAACCATCTCATAT 59.985 40.000 0.00 0.00 34.97 1.78
6075 12406 3.140707 TGGATATGCCCAAACCATCTCAT 59.859 43.478 0.00 0.00 34.97 2.90
6150 12481 1.905215 ACCCTGACCTCTCTTGACATG 59.095 52.381 0.00 0.00 0.00 3.21
6246 12577 2.115266 CTTCCACGCCCCCTTGTT 59.885 61.111 0.00 0.00 0.00 2.83
6250 12581 4.351054 CAAGCTTCCACGCCCCCT 62.351 66.667 0.00 0.00 0.00 4.79
6254 12585 1.440145 GGATAGCAAGCTTCCACGCC 61.440 60.000 0.00 0.00 0.00 5.68
6430 12761 9.268268 CAGAACAAATGTCTACTTACAAGGTAA 57.732 33.333 0.00 0.00 32.02 2.85
6514 12910 8.514330 CTCAGTTAGAGGTCATAGAAGTAACT 57.486 38.462 0.00 0.00 40.84 2.24
6612 13008 0.260230 TGGGCCACACTTTTTCCTCA 59.740 50.000 0.00 0.00 0.00 3.86
6744 13142 9.221775 GTTTTATTCGGATGTGAAATGTCATAC 57.778 33.333 0.00 0.00 35.80 2.39
6880 13314 0.601558 TCCACCAGTCGTGCTAGAAC 59.398 55.000 0.00 0.00 41.53 3.01
7274 13712 6.570692 TCGGTATATCTGAGTCAAAACTTCC 58.429 40.000 0.00 0.00 35.28 3.46
7349 13787 4.706962 ACATTTATGTTCTCCCCTTTGCTC 59.293 41.667 0.00 0.00 37.90 4.26
7364 13802 5.264060 ACACGTCGTCTTTCACATTTATG 57.736 39.130 0.00 0.00 0.00 1.90
7444 13882 4.056050 ACACCAACTAGTAGAAAACGCAG 58.944 43.478 3.59 0.00 0.00 5.18
7458 13896 5.767665 TGTTGCAATACAAGATACACCAACT 59.232 36.000 0.59 0.00 39.50 3.16
7600 14079 5.047448 TGAGATATTGCTCAGATCCTACTGC 60.047 44.000 0.00 0.00 39.84 4.40
7646 14125 8.139989 AGTTCTCGTACTGTAAACAAAGTACAT 58.860 33.333 12.10 0.00 45.95 2.29
7648 14127 7.566508 GCAGTTCTCGTACTGTAAACAAAGTAC 60.567 40.741 13.61 3.43 45.76 2.73
7649 14128 6.418819 GCAGTTCTCGTACTGTAAACAAAGTA 59.581 38.462 13.61 0.00 45.76 2.24
7650 14129 5.233689 GCAGTTCTCGTACTGTAAACAAAGT 59.766 40.000 13.61 0.00 45.76 2.66
7651 14130 5.233476 TGCAGTTCTCGTACTGTAAACAAAG 59.767 40.000 13.61 0.00 45.76 2.77
7652 14131 5.110598 TGCAGTTCTCGTACTGTAAACAAA 58.889 37.500 13.61 0.00 45.76 2.83
7653 14132 4.684877 TGCAGTTCTCGTACTGTAAACAA 58.315 39.130 13.61 0.00 45.76 2.83
7654 14133 4.310357 TGCAGTTCTCGTACTGTAAACA 57.690 40.909 13.61 4.16 45.76 2.83
7655 14134 4.684703 ACATGCAGTTCTCGTACTGTAAAC 59.315 41.667 13.61 0.00 45.76 2.01
7656 14135 4.878439 ACATGCAGTTCTCGTACTGTAAA 58.122 39.130 13.61 4.46 45.76 2.01
7657 14136 4.514781 ACATGCAGTTCTCGTACTGTAA 57.485 40.909 13.61 6.21 45.76 2.41
7658 14137 5.632244 TTACATGCAGTTCTCGTACTGTA 57.368 39.130 13.61 10.84 45.76 2.74
7659 14138 4.514781 TTACATGCAGTTCTCGTACTGT 57.485 40.909 13.61 0.00 45.76 3.55
7660 14139 4.864806 ACATTACATGCAGTTCTCGTACTG 59.135 41.667 9.62 9.62 46.55 2.74
7661 14140 5.073311 ACATTACATGCAGTTCTCGTACT 57.927 39.130 0.00 0.00 0.00 2.73
7665 14144 4.864806 ACTGTACATTACATGCAGTTCTCG 59.135 41.667 0.00 0.00 37.12 4.04
7685 14164 9.077674 GTACTTTCTGTGTCTGTCATAATACTG 57.922 37.037 0.00 0.00 0.00 2.74
7686 14165 8.803235 TGTACTTTCTGTGTCTGTCATAATACT 58.197 33.333 0.00 0.00 0.00 2.12
7687 14166 8.981724 TGTACTTTCTGTGTCTGTCATAATAC 57.018 34.615 0.00 0.00 0.00 1.89
7688 14167 9.639601 CTTGTACTTTCTGTGTCTGTCATAATA 57.360 33.333 0.00 0.00 0.00 0.98
7689 14168 7.118390 GCTTGTACTTTCTGTGTCTGTCATAAT 59.882 37.037 0.00 0.00 0.00 1.28
7700 14179 2.221169 TGCCTGCTTGTACTTTCTGTG 58.779 47.619 0.00 0.00 0.00 3.66
7702 14181 3.565482 TCTTTGCCTGCTTGTACTTTCTG 59.435 43.478 0.00 0.00 0.00 3.02
7720 14203 8.951243 GTTTTCTCTACTTATGCAGGATTCTTT 58.049 33.333 0.00 0.00 0.00 2.52
7783 14267 7.309133 CCACTGCTAGTAATGGAAATGTTCAAA 60.309 37.037 1.60 0.00 33.80 2.69
7798 14282 0.546122 CCAATGGGCCACTGCTAGTA 59.454 55.000 9.28 0.00 37.74 1.82
7906 14475 5.296780 TGATCGCTTTTGTTTCTTCTTGAGT 59.703 36.000 0.00 0.00 0.00 3.41
7910 14479 4.527564 CGTGATCGCTTTTGTTTCTTCTT 58.472 39.130 4.48 0.00 0.00 2.52
7925 14494 8.669394 TTAACATACTATTCATAGCGTGATCG 57.331 34.615 6.21 0.00 36.54 3.69
7931 14500 7.360101 GGCCAGTTTAACATACTATTCATAGCG 60.360 40.741 0.00 0.00 33.68 4.26
7934 14503 8.934697 AGAGGCCAGTTTAACATACTATTCATA 58.065 33.333 5.01 0.00 0.00 2.15
7945 14514 4.215399 CGAAATTCAGAGGCCAGTTTAACA 59.785 41.667 5.01 0.00 0.00 2.41
7967 14541 3.855689 AAAGAAATCATGGAAGTGCCG 57.144 42.857 0.00 0.00 40.66 5.69
7998 14572 6.847956 TGAAATGGCAAGTCTTTTGATTTG 57.152 33.333 0.00 0.00 45.36 2.32
7999 14573 7.716123 TCAATGAAATGGCAAGTCTTTTGATTT 59.284 29.630 0.00 0.00 0.00 2.17
8000 14574 7.218614 TCAATGAAATGGCAAGTCTTTTGATT 58.781 30.769 0.00 0.00 0.00 2.57
8001 14575 6.761312 TCAATGAAATGGCAAGTCTTTTGAT 58.239 32.000 0.00 0.00 0.00 2.57
8002 14576 6.159299 TCAATGAAATGGCAAGTCTTTTGA 57.841 33.333 0.00 3.83 0.00 2.69
8003 14577 7.429636 AATCAATGAAATGGCAAGTCTTTTG 57.570 32.000 0.00 1.55 0.00 2.44
8004 14578 9.211485 CTTAATCAATGAAATGGCAAGTCTTTT 57.789 29.630 0.00 0.00 0.00 2.27
8005 14579 7.820872 CCTTAATCAATGAAATGGCAAGTCTTT 59.179 33.333 0.00 0.00 0.00 2.52
8006 14580 7.178983 TCCTTAATCAATGAAATGGCAAGTCTT 59.821 33.333 0.00 0.00 0.00 3.01
8007 14581 6.664816 TCCTTAATCAATGAAATGGCAAGTCT 59.335 34.615 0.00 0.00 0.00 3.24
8008 14582 6.866480 TCCTTAATCAATGAAATGGCAAGTC 58.134 36.000 0.00 0.00 0.00 3.01
8009 14583 6.855763 TCCTTAATCAATGAAATGGCAAGT 57.144 33.333 0.00 0.00 0.00 3.16
8010 14584 7.490402 GTCTTCCTTAATCAATGAAATGGCAAG 59.510 37.037 0.00 0.00 0.00 4.01
8011 14585 7.322664 GTCTTCCTTAATCAATGAAATGGCAA 58.677 34.615 0.00 0.00 0.00 4.52
8012 14586 6.404623 CGTCTTCCTTAATCAATGAAATGGCA 60.405 38.462 0.00 0.00 0.00 4.92
8013 14587 5.973565 CGTCTTCCTTAATCAATGAAATGGC 59.026 40.000 0.00 0.00 0.00 4.40
8014 14588 7.088589 ACGTCTTCCTTAATCAATGAAATGG 57.911 36.000 0.00 0.00 0.00 3.16
8015 14589 8.970691 AAACGTCTTCCTTAATCAATGAAATG 57.029 30.769 0.00 0.00 0.00 2.32
8016 14590 9.981114 AAAAACGTCTTCCTTAATCAATGAAAT 57.019 25.926 0.00 0.00 0.00 2.17
8039 14613 5.186021 TGTGGAAGTGCCTTGTTTAGAAAAA 59.814 36.000 0.00 0.00 37.63 1.94
8040 14614 4.707448 TGTGGAAGTGCCTTGTTTAGAAAA 59.293 37.500 0.00 0.00 37.63 2.29
8041 14615 4.274147 TGTGGAAGTGCCTTGTTTAGAAA 58.726 39.130 0.00 0.00 37.63 2.52
8042 14616 3.892284 TGTGGAAGTGCCTTGTTTAGAA 58.108 40.909 0.00 0.00 37.63 2.10
8043 14617 3.569194 TGTGGAAGTGCCTTGTTTAGA 57.431 42.857 0.00 0.00 37.63 2.10
8044 14618 4.853924 ATTGTGGAAGTGCCTTGTTTAG 57.146 40.909 0.00 0.00 37.63 1.85
8045 14619 6.909550 AATATTGTGGAAGTGCCTTGTTTA 57.090 33.333 0.00 0.00 37.63 2.01
8046 14620 5.806654 AATATTGTGGAAGTGCCTTGTTT 57.193 34.783 0.00 0.00 37.63 2.83
8047 14621 6.010219 AGTAATATTGTGGAAGTGCCTTGTT 58.990 36.000 0.00 0.00 37.63 2.83
8048 14622 5.570320 AGTAATATTGTGGAAGTGCCTTGT 58.430 37.500 0.00 0.00 37.63 3.16
8049 14623 5.220662 CGAGTAATATTGTGGAAGTGCCTTG 60.221 44.000 0.00 0.00 37.63 3.61
8050 14624 4.876107 CGAGTAATATTGTGGAAGTGCCTT 59.124 41.667 0.00 0.00 37.63 4.35
8051 14625 4.161565 TCGAGTAATATTGTGGAAGTGCCT 59.838 41.667 0.00 0.00 37.63 4.75
8052 14626 4.439057 TCGAGTAATATTGTGGAAGTGCC 58.561 43.478 0.00 0.00 37.10 5.01
8053 14627 6.604735 AATCGAGTAATATTGTGGAAGTGC 57.395 37.500 0.00 0.00 0.00 4.40
8072 14646 6.213677 TCACCGATTCAGGTCTTAATAATCG 58.786 40.000 8.38 8.38 43.89 3.34
8073 14647 8.608844 AATCACCGATTCAGGTCTTAATAATC 57.391 34.615 0.00 0.00 43.89 1.75
8074 14648 8.840321 CAAATCACCGATTCAGGTCTTAATAAT 58.160 33.333 0.00 0.00 43.89 1.28
8075 14649 7.827236 ACAAATCACCGATTCAGGTCTTAATAA 59.173 33.333 0.00 0.00 43.89 1.40
8076 14650 7.335627 ACAAATCACCGATTCAGGTCTTAATA 58.664 34.615 0.00 0.00 43.89 0.98
8077 14651 6.180472 ACAAATCACCGATTCAGGTCTTAAT 58.820 36.000 0.00 0.00 43.89 1.40
8078 14652 5.556915 ACAAATCACCGATTCAGGTCTTAA 58.443 37.500 0.00 0.00 43.89 1.85
8079 14653 5.160607 ACAAATCACCGATTCAGGTCTTA 57.839 39.130 0.00 0.00 43.89 2.10
8080 14654 4.021102 ACAAATCACCGATTCAGGTCTT 57.979 40.909 0.00 0.00 43.89 3.01
8081 14655 3.703001 ACAAATCACCGATTCAGGTCT 57.297 42.857 0.00 0.00 43.89 3.85
8082 14656 4.766404 AAACAAATCACCGATTCAGGTC 57.234 40.909 0.00 0.00 43.89 3.85
8106 14680 9.985730 ACAAATCAATGAAAAATAGCTCAAGAA 57.014 25.926 0.00 0.00 0.00 2.52
8107 14681 9.985730 AACAAATCAATGAAAAATAGCTCAAGA 57.014 25.926 0.00 0.00 0.00 3.02
8143 14717 9.298250 TCAGGTCTTAATAATCGAGTAATAGCT 57.702 33.333 0.00 0.00 0.00 3.32
8192 14766 3.374220 ACCATTTCACATGTGCACAAG 57.626 42.857 25.72 22.58 0.00 3.16
8205 14779 0.844660 GGAGGGGGTCCTACCATTTC 59.155 60.000 6.03 0.00 45.05 2.17
8215 14789 3.451402 ACATTTGTTAAGGAGGGGGTC 57.549 47.619 0.00 0.00 0.00 4.46
8216 14790 4.325816 CCATACATTTGTTAAGGAGGGGGT 60.326 45.833 0.00 0.00 0.00 4.95
8217 14791 4.215109 CCATACATTTGTTAAGGAGGGGG 58.785 47.826 0.00 0.00 0.00 5.40
8218 14792 3.636764 GCCATACATTTGTTAAGGAGGGG 59.363 47.826 0.00 0.00 0.00 4.79
8219 14793 4.277476 TGCCATACATTTGTTAAGGAGGG 58.723 43.478 0.00 0.00 0.00 4.30
8272 14852 7.379750 ACTCTCTCTGTACCAAAATGTAAGAC 58.620 38.462 0.00 0.00 0.00 3.01
8285 14865 7.976734 AGTGCAAACATAATACTCTCTCTGTAC 59.023 37.037 0.00 0.00 0.00 2.90
8288 14868 7.840342 AAGTGCAAACATAATACTCTCTCTG 57.160 36.000 0.00 0.00 0.00 3.35
8301 14881 2.050691 CGCGCTAAAAAGTGCAAACAT 58.949 42.857 5.56 0.00 44.74 2.71
8303 14883 1.187055 CACGCGCTAAAAAGTGCAAAC 59.813 47.619 5.73 0.00 44.74 2.93
8317 14897 2.127758 CCACTTCGAAACACGCGC 60.128 61.111 5.73 0.00 42.26 6.86
8318 14898 2.549282 CCCACTTCGAAACACGCG 59.451 61.111 3.53 3.53 42.26 6.01
8337 14917 2.762535 AATTACGTGACCCTCCACAG 57.237 50.000 0.00 0.00 36.89 3.66
8343 14923 4.391155 TGTTTTGCTAATTACGTGACCCT 58.609 39.130 0.00 0.00 0.00 4.34
8366 14950 2.103094 AGAAAAGAAAAACTGGCAGGCC 59.897 45.455 20.34 2.62 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.