Multiple sequence alignment - TraesCS3D01G289300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G289300 chr3D 100.000 6654 0 0 1 6654 399293098 399299751 0.000000e+00 12288
1 TraesCS3D01G289300 chr3D 87.000 300 23 10 211 500 246588269 246588562 2.310000e-84 324
2 TraesCS3D01G289300 chr3D 80.857 350 31 26 170 500 2901502 2901834 6.670000e-60 243
3 TraesCS3D01G289300 chr3B 94.755 3127 112 23 513 3616 525152651 525155748 0.000000e+00 4819
4 TraesCS3D01G289300 chr3B 95.809 1527 43 10 3615 5133 525155874 525157387 0.000000e+00 2446
5 TraesCS3D01G289300 chr3B 92.894 1168 60 6 5197 6353 525160782 525161937 0.000000e+00 1676
6 TraesCS3D01G289300 chr3A 95.126 1744 71 9 514 2255 518468020 518469751 0.000000e+00 2737
7 TraesCS3D01G289300 chr3A 94.291 1699 43 18 3615 5300 518486779 518488436 0.000000e+00 2551
8 TraesCS3D01G289300 chr3A 96.765 742 19 5 2251 2989 518483580 518484319 0.000000e+00 1232
9 TraesCS3D01G289300 chr3A 94.835 697 21 3 5342 6033 518488813 518489499 0.000000e+00 1074
10 TraesCS3D01G289300 chr3A 95.261 633 26 2 2985 3616 518486082 518486711 0.000000e+00 1000
11 TraesCS3D01G289300 chr3A 93.038 632 33 5 6030 6652 518490439 518491068 0.000000e+00 913
12 TraesCS3D01G289300 chr5B 89.307 505 47 5 1 500 558612565 558613067 1.580000e-175 627
13 TraesCS3D01G289300 chr5B 85.857 502 30 22 1 501 406940233 406940694 4.630000e-136 496
14 TraesCS3D01G289300 chr5B 79.883 512 65 29 1 500 377812495 377812980 2.300000e-89 340
15 TraesCS3D01G289300 chr4A 85.433 508 47 6 1 504 47712514 47712030 2.770000e-138 503
16 TraesCS3D01G289300 chr7A 83.665 502 52 11 1 500 49513547 49513074 4.730000e-121 446
17 TraesCS3D01G289300 chr2D 86.757 370 29 2 133 501 42035468 42035118 1.740000e-105 394
18 TraesCS3D01G289300 chr6D 78.488 516 67 28 1 502 178817414 178817899 1.400000e-76 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G289300 chr3D 399293098 399299751 6653 False 12288.000000 12288 100.000 1 6654 1 chr3D.!!$F3 6653
1 TraesCS3D01G289300 chr3B 525152651 525161937 9286 False 2980.333333 4819 94.486 513 6353 3 chr3B.!!$F1 5840
2 TraesCS3D01G289300 chr3A 518468020 518469751 1731 False 2737.000000 2737 95.126 514 2255 1 chr3A.!!$F1 1741
3 TraesCS3D01G289300 chr3A 518483580 518491068 7488 False 1354.000000 2551 94.838 2251 6652 5 chr3A.!!$F2 4401
4 TraesCS3D01G289300 chr5B 558612565 558613067 502 False 627.000000 627 89.307 1 500 1 chr5B.!!$F3 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 540 0.178975 CTAAGTTTGGGTGGGTGGCA 60.179 55.000 0.00 0.0 0.00 4.92 F
1441 1445 2.968655 ACGCGTTTTTCTCGTTATTTGC 59.031 40.909 5.58 0.0 33.57 3.68 F
2132 2138 0.387202 ACCTCTCGCTGGATGAATCG 59.613 55.000 0.00 0.0 0.00 3.34 F
2758 2767 1.426215 GGTGGGGTGAAGAGGGTTAAA 59.574 52.381 0.00 0.0 0.00 1.52 F
3595 5388 0.767375 TGCTTTCCTGGAGTGAGCTT 59.233 50.000 21.46 0.0 34.56 3.74 F
4649 6574 2.084546 GCTGGAACCAGTCAATACACC 58.915 52.381 19.97 0.0 45.24 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1495 1.224069 GCACAAGAGCACGCAGAGAA 61.224 55.000 0.00 0.0 0.00 2.87 R
3342 5135 0.545309 TGGTTCTGGTGCTAGGAGCT 60.545 55.000 14.78 0.0 42.97 4.09 R
3437 5230 2.437651 GCTTCTCTAGCCTTCAGGGAAT 59.562 50.000 0.00 0.0 44.48 3.01 R
4628 6553 1.732259 GTGTATTGACTGGTTCCAGCG 59.268 52.381 17.55 0.0 37.57 5.18 R
4882 6808 3.133183 TGGTCACTGTTACAGCACTTGTA 59.867 43.478 12.80 0.0 41.29 2.41 R
6605 13178 0.035725 TTCCCTCGTACGAGCTCAGA 60.036 55.000 34.54 24.5 40.69 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.554036 GCGTGGGGAGAGGCCATC 62.554 72.222 5.01 1.65 38.95 3.51
106 107 1.603739 GTTGGGAAGGTGGTGGCTC 60.604 63.158 0.00 0.00 0.00 4.70
162 163 2.279810 TGTGGTGGAAGGCGATCGA 61.280 57.895 21.57 0.00 0.00 3.59
167 168 2.127869 TGGAAGGCGATCGAGAGGG 61.128 63.158 21.57 0.00 0.00 4.30
174 175 1.152735 CGATCGAGAGGGAGGGGAA 60.153 63.158 10.26 0.00 0.00 3.97
178 179 1.001760 CGAGAGGGAGGGGAAGGAA 59.998 63.158 0.00 0.00 0.00 3.36
180 181 1.307430 AGAGGGAGGGGAAGGAAGC 60.307 63.158 0.00 0.00 0.00 3.86
182 183 2.687566 GGGAGGGGAAGGAAGCGA 60.688 66.667 0.00 0.00 0.00 4.93
200 201 1.749334 GAGTGGCGATCGGGAAGGAT 61.749 60.000 18.30 0.00 0.00 3.24
207 208 1.462238 ATCGGGAAGGATGGGAGGG 60.462 63.158 0.00 0.00 0.00 4.30
208 209 1.973346 ATCGGGAAGGATGGGAGGGA 61.973 60.000 0.00 0.00 0.00 4.20
209 210 1.692749 CGGGAAGGATGGGAGGGAA 60.693 63.158 0.00 0.00 0.00 3.97
210 211 1.700042 CGGGAAGGATGGGAGGGAAG 61.700 65.000 0.00 0.00 0.00 3.46
213 214 0.327576 GAAGGATGGGAGGGAAGGGA 60.328 60.000 0.00 0.00 0.00 4.20
214 215 0.327964 AAGGATGGGAGGGAAGGGAG 60.328 60.000 0.00 0.00 0.00 4.30
215 216 1.772156 GGATGGGAGGGAAGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
216 217 2.368878 ATGGGAGGGAAGGGAGGC 60.369 66.667 0.00 0.00 0.00 4.70
299 300 4.286320 CGGCAGCGGCTAGGGTAG 62.286 72.222 9.17 0.00 40.87 3.18
300 301 3.930012 GGCAGCGGCTAGGGTAGG 61.930 72.222 9.17 0.00 40.87 3.18
301 302 3.930012 GCAGCGGCTAGGGTAGGG 61.930 72.222 0.26 0.00 36.96 3.53
302 303 2.444140 CAGCGGCTAGGGTAGGGT 60.444 66.667 0.26 0.00 0.00 4.34
303 304 1.152610 CAGCGGCTAGGGTAGGGTA 60.153 63.158 0.26 0.00 0.00 3.69
304 305 1.153292 AGCGGCTAGGGTAGGGTAG 59.847 63.158 0.00 0.00 0.00 3.18
305 306 1.907315 GCGGCTAGGGTAGGGTAGG 60.907 68.421 0.00 0.00 0.00 3.18
306 307 1.849116 CGGCTAGGGTAGGGTAGGA 59.151 63.158 0.00 0.00 0.00 2.94
307 308 0.251253 CGGCTAGGGTAGGGTAGGAG 60.251 65.000 0.00 0.00 0.00 3.69
308 309 0.542467 GGCTAGGGTAGGGTAGGAGC 60.542 65.000 0.00 0.00 0.00 4.70
309 310 0.894642 GCTAGGGTAGGGTAGGAGCG 60.895 65.000 0.00 0.00 0.00 5.03
310 311 0.251253 CTAGGGTAGGGTAGGAGCGG 60.251 65.000 0.00 0.00 0.00 5.52
311 312 0.698886 TAGGGTAGGGTAGGAGCGGA 60.699 60.000 0.00 0.00 0.00 5.54
312 313 1.075748 GGGTAGGGTAGGAGCGGAA 60.076 63.158 0.00 0.00 0.00 4.30
313 314 1.114119 GGGTAGGGTAGGAGCGGAAG 61.114 65.000 0.00 0.00 0.00 3.46
328 329 3.014604 CGGAAGCTAGGTTAGAATCGG 57.985 52.381 7.26 0.00 0.00 4.18
329 330 2.621998 CGGAAGCTAGGTTAGAATCGGA 59.378 50.000 7.26 0.00 0.00 4.55
330 331 3.067742 CGGAAGCTAGGTTAGAATCGGAA 59.932 47.826 7.26 0.00 0.00 4.30
331 332 4.441079 CGGAAGCTAGGTTAGAATCGGAAA 60.441 45.833 7.26 0.00 0.00 3.13
332 333 5.051153 GGAAGCTAGGTTAGAATCGGAAAG 58.949 45.833 7.26 0.00 0.00 2.62
333 334 4.674281 AGCTAGGTTAGAATCGGAAAGG 57.326 45.455 0.00 0.00 0.00 3.11
334 335 4.287552 AGCTAGGTTAGAATCGGAAAGGA 58.712 43.478 0.00 0.00 0.00 3.36
335 336 4.715297 AGCTAGGTTAGAATCGGAAAGGAA 59.285 41.667 0.00 0.00 0.00 3.36
336 337 5.189145 AGCTAGGTTAGAATCGGAAAGGAAA 59.811 40.000 0.00 0.00 0.00 3.13
337 338 5.293814 GCTAGGTTAGAATCGGAAAGGAAAC 59.706 44.000 0.00 0.00 0.00 2.78
339 340 5.246307 AGGTTAGAATCGGAAAGGAAACTG 58.754 41.667 0.00 0.00 42.68 3.16
340 341 5.012768 AGGTTAGAATCGGAAAGGAAACTGA 59.987 40.000 0.00 0.00 42.68 3.41
341 342 5.880887 GGTTAGAATCGGAAAGGAAACTGAT 59.119 40.000 0.00 0.00 42.68 2.90
342 343 7.046033 GGTTAGAATCGGAAAGGAAACTGATA 58.954 38.462 0.00 0.00 42.68 2.15
343 344 7.011202 GGTTAGAATCGGAAAGGAAACTGATAC 59.989 40.741 0.00 0.00 42.68 2.24
344 345 5.429130 AGAATCGGAAAGGAAACTGATACC 58.571 41.667 0.00 0.00 42.68 2.73
345 346 4.837093 ATCGGAAAGGAAACTGATACCA 57.163 40.909 0.00 0.00 42.68 3.25
346 347 4.837093 TCGGAAAGGAAACTGATACCAT 57.163 40.909 0.00 0.00 42.68 3.55
347 348 4.513442 TCGGAAAGGAAACTGATACCATG 58.487 43.478 0.00 0.00 42.68 3.66
348 349 3.627577 CGGAAAGGAAACTGATACCATGG 59.372 47.826 11.19 11.19 42.68 3.66
349 350 4.600062 GGAAAGGAAACTGATACCATGGT 58.400 43.478 23.55 23.55 42.68 3.55
350 351 4.399303 GGAAAGGAAACTGATACCATGGTG 59.601 45.833 28.17 13.05 42.68 4.17
351 352 4.927267 AAGGAAACTGATACCATGGTGA 57.073 40.909 28.17 11.79 42.68 4.02
352 353 4.927267 AGGAAACTGATACCATGGTGAA 57.073 40.909 28.17 8.99 41.13 3.18
353 354 4.848357 AGGAAACTGATACCATGGTGAAG 58.152 43.478 28.17 21.68 41.13 3.02
354 355 3.947834 GGAAACTGATACCATGGTGAAGG 59.052 47.826 28.17 16.28 0.00 3.46
355 356 2.717639 ACTGATACCATGGTGAAGGC 57.282 50.000 28.17 11.80 0.00 4.35
356 357 1.915489 ACTGATACCATGGTGAAGGCA 59.085 47.619 28.17 15.46 0.00 4.75
357 358 2.308570 ACTGATACCATGGTGAAGGCAA 59.691 45.455 28.17 5.58 0.00 4.52
358 359 3.053395 ACTGATACCATGGTGAAGGCAAT 60.053 43.478 28.17 10.84 0.00 3.56
359 360 3.289836 TGATACCATGGTGAAGGCAATG 58.710 45.455 28.17 0.00 0.00 2.82
360 361 1.473258 TACCATGGTGAAGGCAATGC 58.527 50.000 28.17 0.00 0.00 3.56
361 362 0.542467 ACCATGGTGAAGGCAATGCA 60.542 50.000 18.99 0.00 0.00 3.96
362 363 0.609151 CCATGGTGAAGGCAATGCAA 59.391 50.000 7.79 0.00 0.00 4.08
363 364 1.673626 CCATGGTGAAGGCAATGCAAC 60.674 52.381 7.79 0.00 0.00 4.17
364 365 1.274167 CATGGTGAAGGCAATGCAACT 59.726 47.619 7.79 0.00 0.00 3.16
365 366 0.961019 TGGTGAAGGCAATGCAACTC 59.039 50.000 7.79 0.32 0.00 3.01
366 367 1.251251 GGTGAAGGCAATGCAACTCT 58.749 50.000 7.79 0.00 0.00 3.24
367 368 1.200948 GGTGAAGGCAATGCAACTCTC 59.799 52.381 7.79 1.09 0.00 3.20
368 369 2.157738 GTGAAGGCAATGCAACTCTCT 58.842 47.619 7.79 0.00 0.00 3.10
369 370 3.338249 GTGAAGGCAATGCAACTCTCTA 58.662 45.455 7.79 0.00 0.00 2.43
370 371 3.944015 GTGAAGGCAATGCAACTCTCTAT 59.056 43.478 7.79 0.00 0.00 1.98
371 372 3.943381 TGAAGGCAATGCAACTCTCTATG 59.057 43.478 7.79 0.00 0.00 2.23
372 373 3.641434 AGGCAATGCAACTCTCTATGT 57.359 42.857 7.79 0.00 0.00 2.29
373 374 4.760530 AGGCAATGCAACTCTCTATGTA 57.239 40.909 7.79 0.00 0.00 2.29
374 375 5.301835 AGGCAATGCAACTCTCTATGTAT 57.698 39.130 7.79 0.00 0.00 2.29
375 376 5.688807 AGGCAATGCAACTCTCTATGTATT 58.311 37.500 7.79 0.00 33.03 1.89
376 377 5.530171 AGGCAATGCAACTCTCTATGTATTG 59.470 40.000 7.79 10.81 37.07 1.90
377 378 5.528690 GGCAATGCAACTCTCTATGTATTGA 59.471 40.000 16.96 0.00 37.07 2.57
378 379 6.206243 GGCAATGCAACTCTCTATGTATTGAT 59.794 38.462 16.96 0.00 37.07 2.57
379 380 7.296660 GCAATGCAACTCTCTATGTATTGATC 58.703 38.462 16.96 0.00 37.07 2.92
380 381 7.508134 CAATGCAACTCTCTATGTATTGATCG 58.492 38.462 9.91 0.00 37.07 3.69
381 382 5.532557 TGCAACTCTCTATGTATTGATCGG 58.467 41.667 0.00 0.00 0.00 4.18
382 383 4.926238 GCAACTCTCTATGTATTGATCGGG 59.074 45.833 0.00 0.00 0.00 5.14
383 384 5.509840 GCAACTCTCTATGTATTGATCGGGT 60.510 44.000 0.00 0.00 0.00 5.28
384 385 6.294564 GCAACTCTCTATGTATTGATCGGGTA 60.295 42.308 0.00 0.00 0.00 3.69
385 386 6.821031 ACTCTCTATGTATTGATCGGGTAC 57.179 41.667 0.00 0.00 0.00 3.34
386 387 6.304624 ACTCTCTATGTATTGATCGGGTACA 58.695 40.000 0.00 6.99 33.35 2.90
387 388 6.207025 ACTCTCTATGTATTGATCGGGTACAC 59.793 42.308 6.76 0.00 31.79 2.90
388 389 5.180680 TCTCTATGTATTGATCGGGTACACG 59.819 44.000 12.38 12.38 31.79 4.49
389 390 2.875087 TGTATTGATCGGGTACACGG 57.125 50.000 19.08 0.00 0.00 4.94
390 391 2.101783 TGTATTGATCGGGTACACGGT 58.898 47.619 19.08 11.48 0.00 4.83
391 392 2.159212 TGTATTGATCGGGTACACGGTG 60.159 50.000 19.08 6.58 0.00 4.94
392 393 0.461339 ATTGATCGGGTACACGGTGC 60.461 55.000 19.08 7.92 0.00 5.01
393 394 1.817911 TTGATCGGGTACACGGTGCA 61.818 55.000 19.08 10.57 0.00 4.57
394 395 1.808390 GATCGGGTACACGGTGCAC 60.808 63.158 19.08 8.80 0.00 4.57
395 396 2.495366 GATCGGGTACACGGTGCACA 62.495 60.000 19.08 0.00 0.00 4.57
396 397 1.895020 ATCGGGTACACGGTGCACAT 61.895 55.000 19.08 2.58 0.00 3.21
397 398 1.215912 CGGGTACACGGTGCACATA 59.784 57.895 20.43 2.15 0.00 2.29
398 399 0.179094 CGGGTACACGGTGCACATAT 60.179 55.000 20.43 3.19 0.00 1.78
399 400 1.067364 CGGGTACACGGTGCACATATA 59.933 52.381 20.43 2.14 0.00 0.86
400 401 2.288579 CGGGTACACGGTGCACATATAT 60.289 50.000 20.43 2.04 0.00 0.86
401 402 3.057386 CGGGTACACGGTGCACATATATA 60.057 47.826 20.43 1.01 0.00 0.86
402 403 4.559099 CGGGTACACGGTGCACATATATAA 60.559 45.833 20.43 0.00 0.00 0.98
403 404 4.927425 GGGTACACGGTGCACATATATAAG 59.073 45.833 20.43 1.66 0.00 1.73
404 405 5.510179 GGGTACACGGTGCACATATATAAGT 60.510 44.000 20.43 7.54 0.00 2.24
405 406 6.294675 GGGTACACGGTGCACATATATAAGTA 60.295 42.308 20.43 6.60 0.00 2.24
406 407 7.147312 GGTACACGGTGCACATATATAAGTAA 58.853 38.462 20.43 0.00 0.00 2.24
407 408 7.652909 GGTACACGGTGCACATATATAAGTAAA 59.347 37.037 20.43 0.00 0.00 2.01
408 409 7.709269 ACACGGTGCACATATATAAGTAAAG 57.291 36.000 20.43 0.00 0.00 1.85
409 410 6.704493 ACACGGTGCACATATATAAGTAAAGG 59.296 38.462 20.43 0.00 0.00 3.11
410 411 6.147164 CACGGTGCACATATATAAGTAAAGGG 59.853 42.308 20.43 0.00 0.00 3.95
411 412 5.121768 CGGTGCACATATATAAGTAAAGGGC 59.878 44.000 20.43 0.00 0.00 5.19
412 413 6.001460 GGTGCACATATATAAGTAAAGGGCA 58.999 40.000 20.43 0.00 0.00 5.36
413 414 6.149474 GGTGCACATATATAAGTAAAGGGCAG 59.851 42.308 20.43 0.00 0.00 4.85
414 415 5.705441 TGCACATATATAAGTAAAGGGCAGC 59.295 40.000 0.00 0.00 0.00 5.25
415 416 5.123979 GCACATATATAAGTAAAGGGCAGCC 59.876 44.000 1.26 1.26 0.00 4.85
416 417 5.648092 CACATATATAAGTAAAGGGCAGCCC 59.352 44.000 24.90 24.90 45.90 5.19
435 436 4.677584 GCCCTCAGCTTCATCTATATACG 58.322 47.826 0.00 0.00 38.99 3.06
436 437 4.399618 GCCCTCAGCTTCATCTATATACGA 59.600 45.833 0.00 0.00 38.99 3.43
437 438 5.105716 GCCCTCAGCTTCATCTATATACGAA 60.106 44.000 0.00 0.00 38.99 3.85
438 439 6.572509 GCCCTCAGCTTCATCTATATACGAAA 60.573 42.308 0.00 0.00 38.99 3.46
439 440 7.378966 CCCTCAGCTTCATCTATATACGAAAA 58.621 38.462 0.00 0.00 0.00 2.29
440 441 8.037758 CCCTCAGCTTCATCTATATACGAAAAT 58.962 37.037 0.00 0.00 0.00 1.82
441 442 9.429359 CCTCAGCTTCATCTATATACGAAAATT 57.571 33.333 0.00 0.00 0.00 1.82
448 449 9.569167 TTCATCTATATACGAAAATTAGAGGCG 57.431 33.333 0.00 0.00 0.00 5.52
449 450 8.188799 TCATCTATATACGAAAATTAGAGGCGG 58.811 37.037 0.00 0.00 0.00 6.13
450 451 6.860080 TCTATATACGAAAATTAGAGGCGGG 58.140 40.000 0.00 0.00 0.00 6.13
451 452 2.607631 TACGAAAATTAGAGGCGGGG 57.392 50.000 0.00 0.00 0.00 5.73
452 453 0.746923 ACGAAAATTAGAGGCGGGGC 60.747 55.000 0.00 0.00 0.00 5.80
464 465 2.842936 CGGGGCCGGTAGGAGATT 60.843 66.667 1.90 0.00 41.02 2.40
465 466 1.532316 CGGGGCCGGTAGGAGATTA 60.532 63.158 1.90 0.00 41.02 1.75
466 467 0.903454 CGGGGCCGGTAGGAGATTAT 60.903 60.000 1.90 0.00 41.02 1.28
467 468 0.903236 GGGGCCGGTAGGAGATTATC 59.097 60.000 1.90 0.00 41.02 1.75
483 484 7.615403 GGAGATTATCCTAACAGATACATGCA 58.385 38.462 0.00 0.00 45.64 3.96
484 485 7.547370 GGAGATTATCCTAACAGATACATGCAC 59.453 40.741 0.00 0.00 45.64 4.57
485 486 7.966812 AGATTATCCTAACAGATACATGCACA 58.033 34.615 0.00 0.00 0.00 4.57
486 487 8.600668 AGATTATCCTAACAGATACATGCACAT 58.399 33.333 0.00 0.00 0.00 3.21
487 488 9.875691 GATTATCCTAACAGATACATGCACATA 57.124 33.333 0.00 0.00 0.00 2.29
492 493 9.657419 TCCTAACAGATACATGCACATAATATG 57.343 33.333 0.00 0.00 0.00 1.78
493 494 9.440773 CCTAACAGATACATGCACATAATATGT 57.559 33.333 0.00 0.00 46.22 2.29
496 497 8.907222 ACAGATACATGCACATAATATGTTCA 57.093 30.769 8.07 8.07 42.70 3.18
497 498 9.341078 ACAGATACATGCACATAATATGTTCAA 57.659 29.630 9.55 0.00 42.70 2.69
498 499 9.603298 CAGATACATGCACATAATATGTTCAAC 57.397 33.333 9.55 0.00 42.70 3.18
499 500 9.341078 AGATACATGCACATAATATGTTCAACA 57.659 29.630 9.55 0.00 42.70 3.33
500 501 9.949174 GATACATGCACATAATATGTTCAACAA 57.051 29.630 9.55 0.00 42.70 2.83
503 504 9.656040 ACATGCACATAATATGTTCAACAATTT 57.344 25.926 9.55 0.00 42.70 1.82
539 540 0.178975 CTAAGTTTGGGTGGGTGGCA 60.179 55.000 0.00 0.00 0.00 4.92
574 576 6.980397 TCGAAGAAAAGAGTAGTACGGTTTTT 59.020 34.615 13.60 11.94 0.00 1.94
578 580 7.270779 AGAAAAGAGTAGTACGGTTTTTGACT 58.729 34.615 13.60 6.90 0.00 3.41
741 744 6.788684 TTTGTGATTTCTGCATTTTCATGG 57.211 33.333 0.00 0.00 0.00 3.66
1126 1130 4.087892 GCGGGCAGAGGAAGCAGA 62.088 66.667 0.00 0.00 0.00 4.26
1441 1445 2.968655 ACGCGTTTTTCTCGTTATTTGC 59.031 40.909 5.58 0.00 33.57 3.68
1491 1495 1.891919 ACGCGTTTGATGCTGGTGT 60.892 52.632 5.58 0.00 0.00 4.16
1539 1544 4.636249 CCAGGTATAACAAGGAGATGCTC 58.364 47.826 0.00 0.00 0.00 4.26
1792 1797 1.901833 GTGCCCTGGAAATTTCATGGT 59.098 47.619 19.49 0.00 0.00 3.55
1793 1798 3.096092 GTGCCCTGGAAATTTCATGGTA 58.904 45.455 19.49 12.29 0.00 3.25
1884 1889 9.363763 GTACTAGTGTTAAAAGAAGGGTATGTC 57.636 37.037 5.39 0.00 0.00 3.06
1926 1932 1.171308 GCACTGAACATGGATGCTGT 58.829 50.000 0.00 0.00 33.44 4.40
1944 1950 3.769536 CTGTTCGGTTATTTTCATGGGC 58.230 45.455 0.00 0.00 0.00 5.36
1965 1971 0.831711 GGGGCAGAAACCACCATTGT 60.832 55.000 0.00 0.00 0.00 2.71
2109 2115 4.018415 TGGGCTCAAAATAGAGTTTAGCCT 60.018 41.667 10.03 0.00 45.79 4.58
2132 2138 0.387202 ACCTCTCGCTGGATGAATCG 59.613 55.000 0.00 0.00 0.00 3.34
2169 2175 1.554160 TGCAATTAAGTTGGGCCATGG 59.446 47.619 7.26 7.63 38.29 3.66
2194 2200 8.860088 GGCCTACTGGATATTATTGTTTCATTT 58.140 33.333 0.00 0.00 34.57 2.32
2453 2462 6.072008 TGGTACATTTCATTCCATGTGAGTTG 60.072 38.462 0.00 0.00 35.24 3.16
2584 2593 1.970640 TCAGGTAAGCTCAGTTGCTGA 59.029 47.619 0.00 0.00 43.24 4.26
2633 2642 9.226345 CTTTTTGTCTTCTAGTTTAGCAACTTG 57.774 33.333 0.00 0.00 40.66 3.16
2663 2672 9.559732 TGTTCATTGGTATGGAATATCAGTTAG 57.440 33.333 0.00 0.00 41.71 2.34
2734 2743 2.587060 TTCATCTCCTATGGGTGGGT 57.413 50.000 0.00 0.00 0.00 4.51
2735 2744 1.806496 TCATCTCCTATGGGTGGGTG 58.194 55.000 0.00 0.00 0.00 4.61
2758 2767 1.426215 GGTGGGGTGAAGAGGGTTAAA 59.574 52.381 0.00 0.00 0.00 1.52
2762 2771 2.160205 GGGTGAAGAGGGTTAAACTGC 58.840 52.381 0.00 0.00 0.00 4.40
2887 2896 6.610075 AATGGGATGCAAATGTTAGAACTT 57.390 33.333 0.00 0.00 0.00 2.66
2914 2924 8.543774 CAAGAACTAAATTAAGCAGTATCTCCG 58.456 37.037 0.00 0.00 0.00 4.63
2915 2925 8.008513 AGAACTAAATTAAGCAGTATCTCCGA 57.991 34.615 0.00 0.00 0.00 4.55
2916 2926 7.921745 AGAACTAAATTAAGCAGTATCTCCGAC 59.078 37.037 0.00 0.00 0.00 4.79
2917 2927 7.108841 ACTAAATTAAGCAGTATCTCCGACA 57.891 36.000 0.00 0.00 0.00 4.35
2918 2928 7.553334 ACTAAATTAAGCAGTATCTCCGACAA 58.447 34.615 0.00 0.00 0.00 3.18
2962 2974 6.318648 TGTCTTGCATACCCATCATTTCTTAC 59.681 38.462 0.00 0.00 0.00 2.34
3085 4864 8.810990 TTCTGTTTAATTATCGGTTTATGGGT 57.189 30.769 0.00 0.00 0.00 4.51
3111 4891 4.578871 TGTTATGCTCCATATCATTCCCG 58.421 43.478 0.00 0.00 0.00 5.14
3119 4899 4.861196 TCCATATCATTCCCGTTTTTCCA 58.139 39.130 0.00 0.00 0.00 3.53
3135 4915 2.256591 CCATACGCCTGCTCATGGC 61.257 63.158 6.08 0.00 46.42 4.40
3194 4974 5.066117 CAGCAGAGTACGGTAGTTCAGATAA 59.934 44.000 0.00 0.00 0.00 1.75
3224 5017 3.119065 GCCAACAGGACTAGGAGAAGTAC 60.119 52.174 0.00 0.00 0.00 2.73
3229 5022 4.701171 ACAGGACTAGGAGAAGTACGAAAG 59.299 45.833 0.00 0.00 35.30 2.62
3257 5050 6.487689 AGGAAGAAAATTACTGCTCGAAAG 57.512 37.500 0.00 0.00 0.00 2.62
3266 5059 6.893958 ATTACTGCTCGAAAGACACATAAG 57.106 37.500 1.95 0.00 35.39 1.73
3294 5087 3.120234 GCAACAGCAGCAAAACAAAAACT 60.120 39.130 0.00 0.00 0.00 2.66
3320 5113 6.691508 AGACTACGCTGATGCAAATATATCA 58.308 36.000 0.00 0.00 39.64 2.15
3331 5124 9.208022 TGATGCAAATATATCACAGCTAACTAC 57.792 33.333 0.00 0.00 0.00 2.73
3332 5125 9.429359 GATGCAAATATATCACAGCTAACTACT 57.571 33.333 0.00 0.00 0.00 2.57
3333 5126 8.818141 TGCAAATATATCACAGCTAACTACTC 57.182 34.615 0.00 0.00 0.00 2.59
3338 5131 9.464714 AATATATCACAGCTAACTACTCAAACG 57.535 33.333 0.00 0.00 0.00 3.60
3342 5135 6.044046 TCACAGCTAACTACTCAAACGAAAA 58.956 36.000 0.00 0.00 0.00 2.29
3394 5187 4.320129 CGTCAACAACCATTGTATTCTGCA 60.320 41.667 0.00 0.00 44.59 4.41
3409 5202 8.557592 TGTATTCTGCATCTCCATATCATTTC 57.442 34.615 0.00 0.00 0.00 2.17
3589 5382 1.544314 GCTTCTGTGCTTTCCTGGAGT 60.544 52.381 0.00 0.00 0.00 3.85
3595 5388 0.767375 TGCTTTCCTGGAGTGAGCTT 59.233 50.000 21.46 0.00 34.56 3.74
3616 5409 6.097696 AGCTTAGAAAAAGACCTCCTAGCTAG 59.902 42.308 14.20 14.20 0.00 3.42
3675 5595 5.046448 TGTGGGCTTAATTTTGCATTCTGAT 60.046 36.000 0.00 0.00 0.00 2.90
3879 5801 8.584063 TGTCAGTGTAATGTAGTACTTCCATA 57.416 34.615 0.00 0.00 0.00 2.74
3982 5904 4.038042 CCTGACTGAACTTTTCTTTTCCCC 59.962 45.833 0.00 0.00 0.00 4.81
3983 5905 4.867086 TGACTGAACTTTTCTTTTCCCCT 58.133 39.130 0.00 0.00 0.00 4.79
3984 5906 5.269189 TGACTGAACTTTTCTTTTCCCCTT 58.731 37.500 0.00 0.00 0.00 3.95
4003 5925 4.887655 CCCTTCTTATGCGTCCCTTAAATT 59.112 41.667 0.00 0.00 0.00 1.82
4210 6135 7.060600 TGTTTAAATCTGAGTTAGTGCATCG 57.939 36.000 0.00 0.00 0.00 3.84
4211 6136 6.871492 TGTTTAAATCTGAGTTAGTGCATCGA 59.129 34.615 0.00 0.00 0.00 3.59
4226 6151 3.632145 TGCATCGAAGTATGAGCTGTAGA 59.368 43.478 0.00 0.00 0.00 2.59
4291 6216 8.539674 TGATAATATCGAACGTGATTTGTTCAG 58.460 33.333 6.66 0.54 44.63 3.02
4405 6330 2.518949 GTGATGGCAATAACAACTGCG 58.481 47.619 0.00 0.00 39.55 5.18
4628 6553 7.904977 GTCATGCAAAAAGTCCTTTTCTTTTTC 59.095 33.333 11.67 8.69 46.46 2.29
4649 6574 2.084546 GCTGGAACCAGTCAATACACC 58.915 52.381 19.97 0.00 45.24 4.16
4654 6579 2.922740 ACCAGTCAATACACCGTTGT 57.077 45.000 0.00 0.00 40.02 3.32
4785 6710 5.123186 TGCCAAGTATTCTTGTTGGTATTCG 59.877 40.000 10.72 0.00 46.70 3.34
4959 6886 9.492730 AATTTTGGTATTGATTTCCCACTCTAT 57.507 29.630 0.00 0.00 0.00 1.98
4961 6888 9.627123 TTTTGGTATTGATTTCCCACTCTATAG 57.373 33.333 0.00 0.00 0.00 1.31
4964 6891 9.837681 TGGTATTGATTTCCCACTCTATAGATA 57.162 33.333 2.11 0.00 0.00 1.98
5083 7016 4.140782 ACCTGGTTAAAGGGATTTGGACTT 60.141 41.667 0.00 0.00 42.11 3.01
5132 7065 7.134815 CCTTTTCAATCTGTACAAGTGAGTTG 58.865 38.462 0.00 0.00 42.48 3.16
5133 7066 7.012327 CCTTTTCAATCTGTACAAGTGAGTTGA 59.988 37.037 7.07 1.74 38.60 3.18
5134 7067 7.857734 TTTCAATCTGTACAAGTGAGTTGAA 57.142 32.000 7.07 6.95 38.60 2.69
5135 7068 7.857734 TTCAATCTGTACAAGTGAGTTGAAA 57.142 32.000 7.07 0.00 38.60 2.69
5136 7069 8.450578 TTCAATCTGTACAAGTGAGTTGAAAT 57.549 30.769 7.07 0.00 38.60 2.17
5137 7070 8.450578 TCAATCTGTACAAGTGAGTTGAAATT 57.549 30.769 7.07 0.00 38.60 1.82
5138 7071 8.559536 TCAATCTGTACAAGTGAGTTGAAATTC 58.440 33.333 7.07 0.00 38.60 2.17
5139 7072 8.344831 CAATCTGTACAAGTGAGTTGAAATTCA 58.655 33.333 7.07 0.00 38.60 2.57
5140 7073 8.627208 ATCTGTACAAGTGAGTTGAAATTCAT 57.373 30.769 7.07 0.00 38.60 2.57
5141 7074 8.450578 TCTGTACAAGTGAGTTGAAATTCATT 57.549 30.769 7.07 0.00 38.60 2.57
5142 7075 8.902806 TCTGTACAAGTGAGTTGAAATTCATTT 58.097 29.630 7.07 0.00 38.60 2.32
5143 7076 9.520204 CTGTACAAGTGAGTTGAAATTCATTTT 57.480 29.630 7.07 0.00 38.60 1.82
5144 7077 9.868277 TGTACAAGTGAGTTGAAATTCATTTTT 57.132 25.926 7.07 0.00 38.60 1.94
5146 7079 8.424274 ACAAGTGAGTTGAAATTCATTTTTCC 57.576 30.769 7.07 0.00 38.60 3.13
5147 7080 8.260114 ACAAGTGAGTTGAAATTCATTTTTCCT 58.740 29.630 7.07 0.00 38.60 3.36
5148 7081 9.748708 CAAGTGAGTTGAAATTCATTTTTCCTA 57.251 29.630 0.00 0.00 38.60 2.94
5266 10548 5.687285 GTCAGACTTACATGCCAACTTTTTG 59.313 40.000 0.00 0.00 0.00 2.44
5321 10906 5.643379 ATTAATTTGCTCACGTCCACAAT 57.357 34.783 0.00 0.00 0.00 2.71
5373 10990 3.054434 ACTTGCTATGTCATGCCACCTTA 60.054 43.478 0.00 0.00 0.00 2.69
5560 11177 0.884704 TCAAGAAAGACCGCCACAGC 60.885 55.000 0.00 0.00 0.00 4.40
5671 11288 4.517285 GCTGATCCAAGTATGAAAGGTGA 58.483 43.478 0.00 0.00 0.00 4.02
5823 11440 1.321474 TTGCTTGGTTTCAGAGGCAG 58.679 50.000 0.00 0.00 0.00 4.85
5841 11462 1.945394 CAGCAGTGCTTGTGTTCTTCT 59.055 47.619 16.89 0.00 36.40 2.85
5909 11530 7.274447 TGATCATGCCATAAATCATATCGCTA 58.726 34.615 0.00 0.00 0.00 4.26
5974 11595 5.838531 TTGTTACTCGGAAACAAAATGGT 57.161 34.783 5.71 0.00 42.28 3.55
5975 11596 5.176407 TGTTACTCGGAAACAAAATGGTG 57.824 39.130 0.00 0.00 34.04 4.17
5976 11597 2.793278 ACTCGGAAACAAAATGGTGC 57.207 45.000 0.00 0.00 0.00 5.01
5977 11598 2.028130 ACTCGGAAACAAAATGGTGCA 58.972 42.857 0.00 0.00 0.00 4.57
5978 11599 2.034558 ACTCGGAAACAAAATGGTGCAG 59.965 45.455 0.00 0.00 0.00 4.41
5979 11600 2.293122 CTCGGAAACAAAATGGTGCAGA 59.707 45.455 0.00 0.00 0.00 4.26
5980 11601 2.690497 TCGGAAACAAAATGGTGCAGAA 59.310 40.909 0.00 0.00 0.00 3.02
6052 12616 6.767524 AATATAAGAATGTTTTGCGGTCCA 57.232 33.333 0.00 0.00 0.00 4.02
6084 12648 1.932156 GCTGCTGTGCTTTTTACTGGC 60.932 52.381 0.00 0.00 0.00 4.85
6122 12686 1.391157 TTGGTGCAACTTGTGAGCCC 61.391 55.000 2.04 0.00 36.74 5.19
6207 12771 8.039538 TGGTGGTATGTGTTGTATACGATTTTA 58.960 33.333 0.00 0.00 32.96 1.52
6232 12802 6.942576 ACACCTTTTTAGCTCATTGAGTACAT 59.057 34.615 14.90 2.53 31.39 2.29
6308 12878 7.378966 TGAGATCTTGTTCACTCTTAAATCGT 58.621 34.615 0.00 0.00 0.00 3.73
6316 12886 8.169839 TGTTCACTCTTAAATCGTTCTTATCG 57.830 34.615 0.00 0.00 0.00 2.92
6317 12887 8.024865 TGTTCACTCTTAAATCGTTCTTATCGA 58.975 33.333 0.00 0.00 41.45 3.59
6328 12898 9.760077 AAATCGTTCTTATCGACCTTTATATGT 57.240 29.630 0.00 0.00 40.07 2.29
6335 12905 8.590204 TCTTATCGACCTTTATATGTGCCATTA 58.410 33.333 0.00 0.00 0.00 1.90
6336 12906 8.542497 TTATCGACCTTTATATGTGCCATTAC 57.458 34.615 0.00 0.00 0.00 1.89
6372 12942 5.123502 CAGCATATTAGAGCTTGGCTAATGG 59.876 44.000 13.71 8.60 39.88 3.16
6379 12949 1.849039 AGCTTGGCTAATGGGTGATCT 59.151 47.619 0.00 0.00 36.99 2.75
6451 13021 8.618677 CAGATCTAAAATCTGCAATCAGCTTTA 58.381 33.333 0.00 0.00 45.94 1.85
6507 13077 1.003476 GGGGGTGCAAATTTGGCAG 60.003 57.895 19.47 0.00 42.85 4.85
6556 13127 3.886505 AGTGGTCCGCACAAATCTTAAAA 59.113 39.130 4.97 0.00 0.00 1.52
6562 13133 4.023536 TCCGCACAAATCTTAAAACACTCC 60.024 41.667 0.00 0.00 0.00 3.85
6565 13136 5.147162 GCACAAATCTTAAAACACTCCTCG 58.853 41.667 0.00 0.00 0.00 4.63
6566 13137 5.049680 GCACAAATCTTAAAACACTCCTCGA 60.050 40.000 0.00 0.00 0.00 4.04
6585 13158 3.005897 TCGACCTAGCCAGAGAATAATGC 59.994 47.826 0.00 0.00 0.00 3.56
6634 13207 4.918201 CGAGGGAAGGGATGGCGC 62.918 72.222 0.00 0.00 0.00 6.53
6652 13225 2.492090 GAGCTCACGATCGTGGCT 59.508 61.111 39.85 39.85 46.89 4.75
6653 13226 1.875813 GAGCTCACGATCGTGGCTG 60.876 63.158 42.14 32.84 45.48 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.866582 CCCACCGATGGCCTCTCC 61.867 72.222 3.32 0.00 45.76 3.71
94 95 3.953775 CACCCGAGCCACCACCTT 61.954 66.667 0.00 0.00 0.00 3.50
162 163 1.307430 GCTTCCTTCCCCTCCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
167 168 1.219393 CACTCGCTTCCTTCCCCTC 59.781 63.158 0.00 0.00 0.00 4.30
174 175 2.496817 GATCGCCACTCGCTTCCT 59.503 61.111 0.00 0.00 38.27 3.36
180 181 2.278857 CTTCCCGATCGCCACTCG 60.279 66.667 10.32 0.00 40.15 4.18
182 183 1.762460 ATCCTTCCCGATCGCCACT 60.762 57.895 10.32 0.00 0.00 4.00
194 195 0.327576 TCCCTTCCCTCCCATCCTTC 60.328 60.000 0.00 0.00 0.00 3.46
282 283 4.286320 CTACCCTAGCCGCTGCCG 62.286 72.222 2.16 0.00 38.69 5.69
283 284 3.930012 CCTACCCTAGCCGCTGCC 61.930 72.222 2.16 0.00 38.69 4.85
284 285 3.930012 CCCTACCCTAGCCGCTGC 61.930 72.222 2.16 0.00 37.95 5.25
285 286 1.152610 TACCCTACCCTAGCCGCTG 60.153 63.158 2.16 0.00 0.00 5.18
286 287 1.153292 CTACCCTACCCTAGCCGCT 59.847 63.158 0.00 0.00 0.00 5.52
287 288 1.907315 CCTACCCTACCCTAGCCGC 60.907 68.421 0.00 0.00 0.00 6.53
288 289 0.251253 CTCCTACCCTACCCTAGCCG 60.251 65.000 0.00 0.00 0.00 5.52
289 290 0.542467 GCTCCTACCCTACCCTAGCC 60.542 65.000 0.00 0.00 0.00 3.93
290 291 0.894642 CGCTCCTACCCTACCCTAGC 60.895 65.000 0.00 0.00 0.00 3.42
291 292 0.251253 CCGCTCCTACCCTACCCTAG 60.251 65.000 0.00 0.00 0.00 3.02
292 293 0.698886 TCCGCTCCTACCCTACCCTA 60.699 60.000 0.00 0.00 0.00 3.53
293 294 1.587522 TTCCGCTCCTACCCTACCCT 61.588 60.000 0.00 0.00 0.00 4.34
294 295 1.075748 TTCCGCTCCTACCCTACCC 60.076 63.158 0.00 0.00 0.00 3.69
295 296 1.746322 GCTTCCGCTCCTACCCTACC 61.746 65.000 0.00 0.00 0.00 3.18
296 297 0.756070 AGCTTCCGCTCCTACCCTAC 60.756 60.000 0.00 0.00 45.15 3.18
297 298 0.848735 TAGCTTCCGCTCCTACCCTA 59.151 55.000 0.00 0.00 45.15 3.53
298 299 0.468400 CTAGCTTCCGCTCCTACCCT 60.468 60.000 0.00 0.00 45.15 4.34
299 300 1.465200 CCTAGCTTCCGCTCCTACCC 61.465 65.000 0.00 0.00 45.15 3.69
300 301 0.756070 ACCTAGCTTCCGCTCCTACC 60.756 60.000 0.00 0.00 45.15 3.18
301 302 1.112950 AACCTAGCTTCCGCTCCTAC 58.887 55.000 0.00 0.00 45.15 3.18
302 303 2.174210 TCTAACCTAGCTTCCGCTCCTA 59.826 50.000 0.00 0.00 45.15 2.94
303 304 1.063867 TCTAACCTAGCTTCCGCTCCT 60.064 52.381 0.00 0.00 45.15 3.69
304 305 1.400737 TCTAACCTAGCTTCCGCTCC 58.599 55.000 0.00 0.00 45.15 4.70
305 306 3.644823 GATTCTAACCTAGCTTCCGCTC 58.355 50.000 0.00 0.00 45.15 5.03
307 308 2.395654 CGATTCTAACCTAGCTTCCGC 58.604 52.381 0.00 0.00 0.00 5.54
308 309 2.621998 TCCGATTCTAACCTAGCTTCCG 59.378 50.000 0.00 0.00 0.00 4.30
309 310 4.667519 TTCCGATTCTAACCTAGCTTCC 57.332 45.455 0.00 0.00 0.00 3.46
310 311 5.051153 CCTTTCCGATTCTAACCTAGCTTC 58.949 45.833 0.00 0.00 0.00 3.86
311 312 4.715297 TCCTTTCCGATTCTAACCTAGCTT 59.285 41.667 0.00 0.00 0.00 3.74
312 313 4.287552 TCCTTTCCGATTCTAACCTAGCT 58.712 43.478 0.00 0.00 0.00 3.32
313 314 4.667519 TCCTTTCCGATTCTAACCTAGC 57.332 45.455 0.00 0.00 0.00 3.42
314 315 6.535508 CAGTTTCCTTTCCGATTCTAACCTAG 59.464 42.308 0.00 0.00 0.00 3.02
315 316 6.211986 TCAGTTTCCTTTCCGATTCTAACCTA 59.788 38.462 0.00 0.00 0.00 3.08
316 317 5.012768 TCAGTTTCCTTTCCGATTCTAACCT 59.987 40.000 0.00 0.00 0.00 3.50
317 318 5.243207 TCAGTTTCCTTTCCGATTCTAACC 58.757 41.667 0.00 0.00 0.00 2.85
318 319 6.986904 ATCAGTTTCCTTTCCGATTCTAAC 57.013 37.500 0.00 0.00 0.00 2.34
319 320 7.046033 GGTATCAGTTTCCTTTCCGATTCTAA 58.954 38.462 0.00 0.00 0.00 2.10
320 321 6.155565 TGGTATCAGTTTCCTTTCCGATTCTA 59.844 38.462 0.00 0.00 0.00 2.10
321 322 5.045869 TGGTATCAGTTTCCTTTCCGATTCT 60.046 40.000 0.00 0.00 0.00 2.40
322 323 5.183228 TGGTATCAGTTTCCTTTCCGATTC 58.817 41.667 0.00 0.00 0.00 2.52
323 324 5.174037 TGGTATCAGTTTCCTTTCCGATT 57.826 39.130 0.00 0.00 0.00 3.34
324 325 4.837093 TGGTATCAGTTTCCTTTCCGAT 57.163 40.909 0.00 0.00 0.00 4.18
325 326 4.513442 CATGGTATCAGTTTCCTTTCCGA 58.487 43.478 0.00 0.00 0.00 4.55
326 327 3.627577 CCATGGTATCAGTTTCCTTTCCG 59.372 47.826 2.57 0.00 0.00 4.30
327 328 4.399303 CACCATGGTATCAGTTTCCTTTCC 59.601 45.833 19.28 0.00 0.00 3.13
328 329 5.253330 TCACCATGGTATCAGTTTCCTTTC 58.747 41.667 19.28 0.00 0.00 2.62
329 330 5.255397 TCACCATGGTATCAGTTTCCTTT 57.745 39.130 19.28 0.00 0.00 3.11
330 331 4.927267 TCACCATGGTATCAGTTTCCTT 57.073 40.909 19.28 0.00 0.00 3.36
331 332 4.324563 CCTTCACCATGGTATCAGTTTCCT 60.325 45.833 19.28 0.00 0.00 3.36
332 333 3.947834 CCTTCACCATGGTATCAGTTTCC 59.052 47.826 19.28 0.00 0.00 3.13
333 334 3.378427 GCCTTCACCATGGTATCAGTTTC 59.622 47.826 19.28 0.00 0.00 2.78
334 335 3.245229 TGCCTTCACCATGGTATCAGTTT 60.245 43.478 19.28 0.00 0.00 2.66
335 336 2.308570 TGCCTTCACCATGGTATCAGTT 59.691 45.455 19.28 0.00 0.00 3.16
336 337 1.915489 TGCCTTCACCATGGTATCAGT 59.085 47.619 19.28 0.00 0.00 3.41
337 338 2.715749 TGCCTTCACCATGGTATCAG 57.284 50.000 19.28 13.18 0.00 2.90
338 339 3.289836 CATTGCCTTCACCATGGTATCA 58.710 45.455 19.28 8.24 0.00 2.15
339 340 2.035066 GCATTGCCTTCACCATGGTATC 59.965 50.000 19.28 5.62 0.00 2.24
340 341 2.034124 GCATTGCCTTCACCATGGTAT 58.966 47.619 19.28 2.14 0.00 2.73
341 342 1.272369 TGCATTGCCTTCACCATGGTA 60.272 47.619 19.28 1.27 0.00 3.25
342 343 0.542467 TGCATTGCCTTCACCATGGT 60.542 50.000 13.00 13.00 0.00 3.55
343 344 0.609151 TTGCATTGCCTTCACCATGG 59.391 50.000 11.19 11.19 0.00 3.66
344 345 1.274167 AGTTGCATTGCCTTCACCATG 59.726 47.619 6.12 0.00 0.00 3.66
345 346 1.547372 GAGTTGCATTGCCTTCACCAT 59.453 47.619 6.12 0.00 0.00 3.55
346 347 0.961019 GAGTTGCATTGCCTTCACCA 59.039 50.000 6.12 0.00 0.00 4.17
347 348 1.200948 GAGAGTTGCATTGCCTTCACC 59.799 52.381 6.12 0.00 0.00 4.02
348 349 2.157738 AGAGAGTTGCATTGCCTTCAC 58.842 47.619 6.12 0.47 0.00 3.18
349 350 2.574006 AGAGAGTTGCATTGCCTTCA 57.426 45.000 6.12 0.00 0.00 3.02
350 351 3.944015 ACATAGAGAGTTGCATTGCCTTC 59.056 43.478 6.12 1.34 0.00 3.46
351 352 3.960571 ACATAGAGAGTTGCATTGCCTT 58.039 40.909 6.12 0.00 0.00 4.35
352 353 3.641434 ACATAGAGAGTTGCATTGCCT 57.359 42.857 6.12 0.00 0.00 4.75
353 354 5.528690 TCAATACATAGAGAGTTGCATTGCC 59.471 40.000 6.12 0.00 30.19 4.52
354 355 6.609237 TCAATACATAGAGAGTTGCATTGC 57.391 37.500 0.46 0.46 30.19 3.56
355 356 7.359849 CCGATCAATACATAGAGAGTTGCATTG 60.360 40.741 0.00 0.00 30.95 2.82
356 357 6.648310 CCGATCAATACATAGAGAGTTGCATT 59.352 38.462 0.00 0.00 0.00 3.56
357 358 6.162079 CCGATCAATACATAGAGAGTTGCAT 58.838 40.000 0.00 0.00 0.00 3.96
358 359 5.509670 CCCGATCAATACATAGAGAGTTGCA 60.510 44.000 0.00 0.00 0.00 4.08
359 360 4.926238 CCCGATCAATACATAGAGAGTTGC 59.074 45.833 0.00 0.00 0.00 4.17
360 361 6.090483 ACCCGATCAATACATAGAGAGTTG 57.910 41.667 0.00 0.00 0.00 3.16
361 362 6.776116 TGTACCCGATCAATACATAGAGAGTT 59.224 38.462 0.00 0.00 0.00 3.01
362 363 6.207025 GTGTACCCGATCAATACATAGAGAGT 59.793 42.308 4.54 0.00 31.79 3.24
363 364 6.613233 GTGTACCCGATCAATACATAGAGAG 58.387 44.000 4.54 0.00 31.79 3.20
364 365 5.180680 CGTGTACCCGATCAATACATAGAGA 59.819 44.000 0.00 0.00 31.79 3.10
365 366 5.391449 CGTGTACCCGATCAATACATAGAG 58.609 45.833 0.00 0.00 31.79 2.43
366 367 4.216902 CCGTGTACCCGATCAATACATAGA 59.783 45.833 0.00 0.00 31.79 1.98
367 368 4.022589 ACCGTGTACCCGATCAATACATAG 60.023 45.833 0.00 2.96 31.79 2.23
368 369 3.890756 ACCGTGTACCCGATCAATACATA 59.109 43.478 0.00 0.00 31.79 2.29
369 370 2.696707 ACCGTGTACCCGATCAATACAT 59.303 45.455 0.00 0.00 31.79 2.29
370 371 2.101783 ACCGTGTACCCGATCAATACA 58.898 47.619 0.00 0.00 0.00 2.29
371 372 2.466846 CACCGTGTACCCGATCAATAC 58.533 52.381 0.00 0.00 0.00 1.89
372 373 1.202440 GCACCGTGTACCCGATCAATA 60.202 52.381 0.00 0.00 0.00 1.90
373 374 0.461339 GCACCGTGTACCCGATCAAT 60.461 55.000 0.00 0.00 0.00 2.57
374 375 1.079681 GCACCGTGTACCCGATCAA 60.080 57.895 0.00 0.00 0.00 2.57
375 376 2.276853 TGCACCGTGTACCCGATCA 61.277 57.895 0.00 0.00 0.00 2.92
376 377 1.808390 GTGCACCGTGTACCCGATC 60.808 63.158 5.22 0.00 0.00 3.69
377 378 1.895020 ATGTGCACCGTGTACCCGAT 61.895 55.000 15.69 1.84 31.71 4.18
378 379 1.249469 TATGTGCACCGTGTACCCGA 61.249 55.000 15.69 0.00 31.71 5.14
379 380 0.179094 ATATGTGCACCGTGTACCCG 60.179 55.000 15.69 0.00 31.71 5.28
380 381 2.894763 TATATGTGCACCGTGTACCC 57.105 50.000 15.69 0.00 31.71 3.69
381 382 5.535333 ACTTATATATGTGCACCGTGTACC 58.465 41.667 15.69 0.70 31.71 3.34
382 383 8.578308 TTTACTTATATATGTGCACCGTGTAC 57.422 34.615 15.69 12.39 33.42 2.90
383 384 7.868922 CCTTTACTTATATATGTGCACCGTGTA 59.131 37.037 15.69 6.33 0.00 2.90
384 385 6.704493 CCTTTACTTATATATGTGCACCGTGT 59.296 38.462 15.69 4.08 0.00 4.49
385 386 6.147164 CCCTTTACTTATATATGTGCACCGTG 59.853 42.308 15.69 0.00 0.00 4.94
386 387 6.228258 CCCTTTACTTATATATGTGCACCGT 58.772 40.000 15.69 5.68 0.00 4.83
387 388 5.121768 GCCCTTTACTTATATATGTGCACCG 59.878 44.000 15.69 0.00 0.00 4.94
388 389 6.001460 TGCCCTTTACTTATATATGTGCACC 58.999 40.000 15.69 0.00 0.00 5.01
389 390 6.348540 GCTGCCCTTTACTTATATATGTGCAC 60.349 42.308 10.75 10.75 0.00 4.57
390 391 5.705441 GCTGCCCTTTACTTATATATGTGCA 59.295 40.000 10.70 9.81 0.00 4.57
391 392 5.123979 GGCTGCCCTTTACTTATATATGTGC 59.876 44.000 7.66 6.38 0.00 4.57
392 393 5.648092 GGGCTGCCCTTTACTTATATATGTG 59.352 44.000 30.42 0.00 41.34 3.21
393 394 5.816682 GGGCTGCCCTTTACTTATATATGT 58.183 41.667 30.42 6.52 41.34 2.29
413 414 4.399618 TCGTATATAGATGAAGCTGAGGGC 59.600 45.833 0.00 0.00 42.19 5.19
414 415 6.516739 TTCGTATATAGATGAAGCTGAGGG 57.483 41.667 0.00 0.00 0.00 4.30
415 416 8.994429 ATTTTCGTATATAGATGAAGCTGAGG 57.006 34.615 2.49 0.00 0.00 3.86
422 423 9.569167 CGCCTCTAATTTTCGTATATAGATGAA 57.431 33.333 0.00 0.00 0.00 2.57
423 424 8.188799 CCGCCTCTAATTTTCGTATATAGATGA 58.811 37.037 0.00 0.00 0.00 2.92
424 425 7.435488 CCCGCCTCTAATTTTCGTATATAGATG 59.565 40.741 0.00 0.00 0.00 2.90
425 426 7.417570 CCCCGCCTCTAATTTTCGTATATAGAT 60.418 40.741 0.00 0.00 0.00 1.98
426 427 6.127535 CCCCGCCTCTAATTTTCGTATATAGA 60.128 42.308 0.00 0.00 0.00 1.98
427 428 6.040878 CCCCGCCTCTAATTTTCGTATATAG 58.959 44.000 0.00 0.00 0.00 1.31
428 429 5.625197 GCCCCGCCTCTAATTTTCGTATATA 60.625 44.000 0.00 0.00 0.00 0.86
429 430 4.828829 CCCCGCCTCTAATTTTCGTATAT 58.171 43.478 0.00 0.00 0.00 0.86
430 431 3.555586 GCCCCGCCTCTAATTTTCGTATA 60.556 47.826 0.00 0.00 0.00 1.47
431 432 2.809299 GCCCCGCCTCTAATTTTCGTAT 60.809 50.000 0.00 0.00 0.00 3.06
432 433 1.473788 GCCCCGCCTCTAATTTTCGTA 60.474 52.381 0.00 0.00 0.00 3.43
433 434 0.746923 GCCCCGCCTCTAATTTTCGT 60.747 55.000 0.00 0.00 0.00 3.85
434 435 1.444917 GGCCCCGCCTCTAATTTTCG 61.445 60.000 0.00 0.00 46.69 3.46
435 436 2.415825 GGCCCCGCCTCTAATTTTC 58.584 57.895 0.00 0.00 46.69 2.29
436 437 4.678423 GGCCCCGCCTCTAATTTT 57.322 55.556 0.00 0.00 46.69 1.82
447 448 0.903454 ATAATCTCCTACCGGCCCCG 60.903 60.000 0.00 0.00 39.44 5.73
448 449 0.903236 GATAATCTCCTACCGGCCCC 59.097 60.000 0.00 0.00 0.00 5.80
449 450 0.903236 GGATAATCTCCTACCGGCCC 59.097 60.000 0.00 0.00 41.29 5.80
458 459 7.547370 GTGCATGTATCTGTTAGGATAATCTCC 59.453 40.741 0.00 0.00 45.33 3.71
459 460 8.090831 TGTGCATGTATCTGTTAGGATAATCTC 58.909 37.037 0.00 0.00 31.10 2.75
460 461 7.966812 TGTGCATGTATCTGTTAGGATAATCT 58.033 34.615 0.00 0.00 31.10 2.40
461 462 8.783833 ATGTGCATGTATCTGTTAGGATAATC 57.216 34.615 0.00 0.00 31.10 1.75
466 467 9.657419 CATATTATGTGCATGTATCTGTTAGGA 57.343 33.333 0.00 0.00 0.00 2.94
467 468 9.440773 ACATATTATGTGCATGTATCTGTTAGG 57.559 33.333 8.51 0.00 43.01 2.69
470 471 9.341078 TGAACATATTATGTGCATGTATCTGTT 57.659 29.630 12.66 0.00 43.79 3.16
471 472 8.907222 TGAACATATTATGTGCATGTATCTGT 57.093 30.769 12.66 0.00 43.79 3.41
508 509 9.635404 CCCACCCAAACTTAGAAATATACAATA 57.365 33.333 0.00 0.00 0.00 1.90
509 510 8.119891 ACCCACCCAAACTTAGAAATATACAAT 58.880 33.333 0.00 0.00 0.00 2.71
510 511 7.394923 CACCCACCCAAACTTAGAAATATACAA 59.605 37.037 0.00 0.00 0.00 2.41
511 512 6.887545 CACCCACCCAAACTTAGAAATATACA 59.112 38.462 0.00 0.00 0.00 2.29
512 513 6.320418 CCACCCACCCAAACTTAGAAATATAC 59.680 42.308 0.00 0.00 0.00 1.47
513 514 6.428295 CCACCCACCCAAACTTAGAAATATA 58.572 40.000 0.00 0.00 0.00 0.86
514 515 5.269189 CCACCCACCCAAACTTAGAAATAT 58.731 41.667 0.00 0.00 0.00 1.28
515 516 4.668636 CCACCCACCCAAACTTAGAAATA 58.331 43.478 0.00 0.00 0.00 1.40
516 517 3.506398 CCACCCACCCAAACTTAGAAAT 58.494 45.455 0.00 0.00 0.00 2.17
517 518 2.952116 CCACCCACCCAAACTTAGAAA 58.048 47.619 0.00 0.00 0.00 2.52
521 522 0.485099 ATGCCACCCACCCAAACTTA 59.515 50.000 0.00 0.00 0.00 2.24
539 540 8.478877 ACTACTCTTTTCTTCGATTGATGGTAT 58.521 33.333 0.00 0.00 0.00 2.73
547 548 6.264841 ACCGTACTACTCTTTTCTTCGATT 57.735 37.500 0.00 0.00 0.00 3.34
698 700 5.236478 ACAAAACGTACTCACCATTCTTCTG 59.764 40.000 0.00 0.00 0.00 3.02
741 744 0.176910 CTCTCCTCCTTTTCGCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
948 952 4.883354 GGCTTGGATCTGGGCGGG 62.883 72.222 0.00 0.00 0.00 6.13
1126 1130 1.834822 GCTCCCTGCGTATCCCTCT 60.835 63.158 0.00 0.00 0.00 3.69
1284 1288 1.506718 GATATCCATCGGCGAGCGA 59.493 57.895 17.22 13.45 0.00 4.93
1491 1495 1.224069 GCACAAGAGCACGCAGAGAA 61.224 55.000 0.00 0.00 0.00 2.87
1539 1544 2.745884 TTCCACATGCGCTTCCCG 60.746 61.111 9.73 0.00 40.75 5.14
1596 1601 2.956987 GACGCAACAGCCTGCATT 59.043 55.556 0.00 0.00 42.77 3.56
1792 1797 7.156876 GCTATTGCAAATTATAGGCACCATA 57.843 36.000 1.71 0.00 37.26 2.74
1793 1798 6.029346 GCTATTGCAAATTATAGGCACCAT 57.971 37.500 1.71 0.00 37.26 3.55
1828 1833 5.368145 TGTATATCCCACAGAAGTGCATTC 58.632 41.667 0.00 0.00 44.53 2.67
1829 1834 5.372343 TGTATATCCCACAGAAGTGCATT 57.628 39.130 0.00 0.00 44.53 3.56
1830 1835 5.573380 ATGTATATCCCACAGAAGTGCAT 57.427 39.130 0.00 0.00 44.53 3.96
1926 1932 1.746220 CCGCCCATGAAAATAACCGAA 59.254 47.619 0.00 0.00 0.00 4.30
1944 1950 3.583882 ATGGTGGTTTCTGCCCCCG 62.584 63.158 0.00 0.00 0.00 5.73
1965 1971 6.533730 AGTGAGTCATGTTCTGTTAATTGGA 58.466 36.000 0.00 0.00 0.00 3.53
2048 2054 3.799574 GCTTGGATTCACATGCAACACAA 60.800 43.478 0.00 0.00 35.91 3.33
2051 2057 2.029739 CAGCTTGGATTCACATGCAACA 60.030 45.455 0.00 0.00 42.15 3.33
2132 2138 8.898983 TTAATTGCAAGTTAATAAAGTACGGC 57.101 30.769 4.05 0.00 0.00 5.68
2169 2175 9.683069 CAAATGAAACAATAATATCCAGTAGGC 57.317 33.333 0.00 0.00 33.74 3.93
2194 2200 8.559536 GCCTTCGTTGATTAAATAGATTCATCA 58.440 33.333 0.00 0.00 0.00 3.07
2203 2209 7.120923 AGTCCTAGCCTTCGTTGATTAAATA 57.879 36.000 0.00 0.00 0.00 1.40
2279 2286 9.226606 AGATGATAAAACACAATAAGAACGGAA 57.773 29.630 0.00 0.00 0.00 4.30
2319 2328 8.976986 ACTGCAGAAGAAATATTCAAATTGTC 57.023 30.769 23.35 0.00 0.00 3.18
2453 2462 7.907214 TTAAGTGAGAAGAGCAGGAAATAAC 57.093 36.000 0.00 0.00 0.00 1.89
2499 2508 9.624697 GATTTACACTGCACAATAATTGAAAGA 57.375 29.630 0.00 0.00 0.00 2.52
2584 2593 2.937591 CATGCACTGCTGAAAACGAAT 58.062 42.857 1.98 0.00 0.00 3.34
2633 2642 7.995289 TGATATTCCATACCAATGAACACAAC 58.005 34.615 0.00 0.00 34.84 3.32
2663 2672 5.357032 TCAACTTTTTCAGGACAAGGTTCTC 59.643 40.000 0.00 0.00 0.00 2.87
2734 2743 2.531685 CTCTTCACCCCACCCCCA 60.532 66.667 0.00 0.00 0.00 4.96
2735 2744 3.339093 CCTCTTCACCCCACCCCC 61.339 72.222 0.00 0.00 0.00 5.40
2744 2753 3.477530 AGTGCAGTTTAACCCTCTTCAC 58.522 45.455 0.00 0.00 0.00 3.18
2758 2767 7.165485 TGTTTCACATAACCTAATAGTGCAGT 58.835 34.615 0.00 0.00 0.00 4.40
2887 2896 9.601217 GGAGATACTGCTTAATTTAGTTCTTGA 57.399 33.333 0.00 0.00 0.00 3.02
2938 2950 5.841957 AAGAAATGATGGGTATGCAAGAC 57.158 39.130 0.00 0.00 0.00 3.01
2962 2974 4.993584 AGTGAATGTCAAGAAGCAGTACTG 59.006 41.667 18.93 18.93 0.00 2.74
3085 4864 7.469870 CGGGAATGATATGGAGCATAACAAAAA 60.470 37.037 0.00 0.00 33.96 1.94
3111 4891 1.810151 TGAGCAGGCGTATGGAAAAAC 59.190 47.619 0.00 0.00 0.00 2.43
3135 4915 1.087771 GCAATAGTGGAACCCGACCG 61.088 60.000 0.00 0.00 37.80 4.79
3194 4974 3.009143 CCTAGTCCTGTTGGCTACCTTTT 59.991 47.826 0.00 0.00 0.00 2.27
3224 5017 7.010023 CAGTAATTTTCTTCCTTCGTCTTTCG 58.990 38.462 0.00 0.00 41.41 3.46
3229 5022 5.444745 CGAGCAGTAATTTTCTTCCTTCGTC 60.445 44.000 0.00 0.00 0.00 4.20
3232 5025 6.481954 TTCGAGCAGTAATTTTCTTCCTTC 57.518 37.500 0.00 0.00 0.00 3.46
3257 5050 0.811281 GTTGCTGGGGCTTATGTGTC 59.189 55.000 0.00 0.00 39.59 3.67
3294 5087 2.741759 TTTGCATCAGCGTAGTCTCA 57.258 45.000 0.00 0.00 46.23 3.27
3320 5113 5.050295 GCTTTTCGTTTGAGTAGTTAGCTGT 60.050 40.000 0.00 0.00 0.00 4.40
3331 5124 3.067106 TGCTAGGAGCTTTTCGTTTGAG 58.933 45.455 0.00 0.00 42.97 3.02
3332 5125 2.806244 GTGCTAGGAGCTTTTCGTTTGA 59.194 45.455 0.00 0.00 42.97 2.69
3333 5126 2.095718 GGTGCTAGGAGCTTTTCGTTTG 60.096 50.000 6.15 0.00 42.97 2.93
3338 5131 2.744741 GTTCTGGTGCTAGGAGCTTTTC 59.255 50.000 14.78 0.13 42.97 2.29
3342 5135 0.545309 TGGTTCTGGTGCTAGGAGCT 60.545 55.000 14.78 0.00 42.97 4.09
3437 5230 2.437651 GCTTCTCTAGCCTTCAGGGAAT 59.562 50.000 0.00 0.00 44.48 3.01
3551 5344 7.115378 CACAGAAGCATATCACTTTGGAAAAAC 59.885 37.037 0.00 0.00 0.00 2.43
3589 5382 5.337652 GCTAGGAGGTCTTTTTCTAAGCTCA 60.338 44.000 0.00 0.00 38.87 4.26
3595 5388 7.793948 AAACTAGCTAGGAGGTCTTTTTCTA 57.206 36.000 24.35 0.00 0.00 2.10
3632 5552 6.226787 CCCACAAATTACAGTGCCAAAAATA 58.773 36.000 0.00 0.00 34.48 1.40
3687 5607 9.894783 GATGATGAATCCACATAAGAGAAATTG 57.105 33.333 0.00 0.00 0.00 2.32
3889 5811 4.381185 CCATGTCCAATCACCAATGTTCAG 60.381 45.833 0.00 0.00 0.00 3.02
3982 5904 5.743872 GCAAATTTAAGGGACGCATAAGAAG 59.256 40.000 0.00 0.00 0.00 2.85
3983 5905 5.417580 AGCAAATTTAAGGGACGCATAAGAA 59.582 36.000 0.00 0.00 0.00 2.52
3984 5906 4.947388 AGCAAATTTAAGGGACGCATAAGA 59.053 37.500 0.00 0.00 0.00 2.10
4003 5925 5.819991 ACCATATTCCTCTTTCTTCAGCAA 58.180 37.500 0.00 0.00 0.00 3.91
4123 6045 8.413229 TGTGCCTGAAATTAATAAAGCTAATCC 58.587 33.333 0.00 0.00 0.00 3.01
4125 6047 9.754382 CATGTGCCTGAAATTAATAAAGCTAAT 57.246 29.630 0.00 0.00 0.00 1.73
4126 6048 8.748412 ACATGTGCCTGAAATTAATAAAGCTAA 58.252 29.630 0.00 0.00 0.00 3.09
4127 6049 8.292444 ACATGTGCCTGAAATTAATAAAGCTA 57.708 30.769 0.00 0.00 0.00 3.32
4157 6082 8.415950 ACAGGTGTCCAATGAAAATACATAAA 57.584 30.769 0.00 0.00 0.00 1.40
4171 6096 7.547370 CAGATTTAAACAAAAACAGGTGTCCAA 59.453 33.333 0.00 0.00 0.00 3.53
4210 6135 6.920758 CACATAACCTCTACAGCTCATACTTC 59.079 42.308 0.00 0.00 0.00 3.01
4211 6136 6.684111 GCACATAACCTCTACAGCTCATACTT 60.684 42.308 0.00 0.00 0.00 2.24
4226 6151 5.171339 AGAGAAGACAATGCACATAACCT 57.829 39.130 0.00 0.00 0.00 3.50
4307 6232 9.590451 CAATAAAAATGATGCTGTAAAGGATGT 57.410 29.630 0.00 0.00 0.00 3.06
4617 6542 4.040445 TGGTTCCAGCGAAAAAGAAAAG 57.960 40.909 0.00 0.00 0.00 2.27
4628 6553 1.732259 GTGTATTGACTGGTTCCAGCG 59.268 52.381 17.55 0.00 37.57 5.18
4683 6608 9.810545 GCTTATTACAAGTATTCTCAGACTCTT 57.189 33.333 0.00 0.00 0.00 2.85
4708 6633 3.242518 GACCGCAAAAAGGACTTATTGC 58.757 45.455 0.00 0.00 43.51 3.56
4726 6651 6.084326 ACAACAAACCAACAATAGATGACC 57.916 37.500 0.00 0.00 0.00 4.02
4882 6808 3.133183 TGGTCACTGTTACAGCACTTGTA 59.867 43.478 12.80 0.00 41.29 2.41
4967 6894 7.864882 TGCGTGAACAAAGATAAATTCATTCAA 59.135 29.630 0.00 0.00 33.85 2.69
4968 6895 7.366513 TGCGTGAACAAAGATAAATTCATTCA 58.633 30.769 0.00 0.00 33.85 2.57
5083 7016 6.098679 GCTGACACCAAATATAATTGTTGCA 58.901 36.000 0.00 0.00 0.00 4.08
5143 7076 9.921637 GGAACAACAAATATTTGAACATAGGAA 57.078 29.630 30.18 0.00 40.55 3.36
5144 7077 9.083422 TGGAACAACAAATATTTGAACATAGGA 57.917 29.630 30.18 8.53 41.23 2.94
5199 7191 9.950680 GAAATTTTAAGTTGATTCTGTGAGTCA 57.049 29.630 0.00 0.00 0.00 3.41
5242 10524 5.438761 AAAAGTTGGCATGTAAGTCTGAC 57.561 39.130 0.00 0.00 0.00 3.51
5266 10548 4.017126 CCTCTTGAACAATTTACTCCCCC 58.983 47.826 0.00 0.00 0.00 5.40
5340 10957 6.882610 TGACATAGCAAGTTCATTGACTTT 57.117 33.333 0.00 0.00 41.83 2.66
5560 11177 4.064388 GGGAATTTGGGTCAACATGTTTG 58.936 43.478 8.77 5.07 0.00 2.93
5637 11254 2.693210 TGGATCAGCCTGTATCATCCA 58.307 47.619 8.38 8.38 40.62 3.41
5823 11440 2.096713 CGTAGAAGAACACAAGCACTGC 60.097 50.000 0.00 0.00 0.00 4.40
5841 11462 2.027561 AGCATAACTCCACAAAGCCGTA 60.028 45.455 0.00 0.00 0.00 4.02
5909 11530 3.777106 TCAGTGTGCCTCTTCTCAATT 57.223 42.857 0.00 0.00 0.00 2.32
5971 11592 4.595031 TGCACCATTTCTGCACCA 57.405 50.000 0.00 0.00 39.76 4.17
5975 11596 0.381801 CCGGTATGCACCATTTCTGC 59.618 55.000 0.00 0.00 46.14 4.26
5976 11597 1.942657 CTCCGGTATGCACCATTTCTG 59.057 52.381 0.00 0.00 46.14 3.02
5977 11598 1.747206 GCTCCGGTATGCACCATTTCT 60.747 52.381 0.00 0.00 46.14 2.52
5978 11599 0.663153 GCTCCGGTATGCACCATTTC 59.337 55.000 0.00 0.00 46.14 2.17
5979 11600 0.255890 AGCTCCGGTATGCACCATTT 59.744 50.000 16.25 0.00 46.14 2.32
5980 11601 0.464373 CAGCTCCGGTATGCACCATT 60.464 55.000 16.25 0.00 46.14 3.16
6028 11650 7.164230 TGGACCGCAAAACATTCTTATATTT 57.836 32.000 0.00 0.00 0.00 1.40
6052 12616 4.521146 AGCACAGCAGCTGTATTTCTAAT 58.479 39.130 27.80 5.12 43.43 1.73
6084 12648 4.037208 ACCAAAATTGAGCTCTTCACACTG 59.963 41.667 16.19 3.84 34.94 3.66
6167 12731 8.333235 ACACATACCACCAATCTAATTCCTTTA 58.667 33.333 0.00 0.00 0.00 1.85
6207 12771 6.296026 TGTACTCAATGAGCTAAAAAGGTGT 58.704 36.000 10.62 0.00 32.04 4.16
6232 12802 5.408356 GCGTCTAAGATTTACACTTCCTCA 58.592 41.667 0.00 0.00 0.00 3.86
6308 12878 6.822442 TGGCACATATAAAGGTCGATAAGAA 58.178 36.000 0.00 0.00 0.00 2.52
6327 12897 5.120674 GCTGAAAAAGGAATTGTAATGGCAC 59.879 40.000 0.00 0.00 0.00 5.01
6328 12898 5.221601 TGCTGAAAAAGGAATTGTAATGGCA 60.222 36.000 0.00 0.00 0.00 4.92
6335 12905 8.193438 GCTCTAATATGCTGAAAAAGGAATTGT 58.807 33.333 0.00 0.00 0.00 2.71
6336 12906 8.411683 AGCTCTAATATGCTGAAAAAGGAATTG 58.588 33.333 0.00 0.00 38.21 2.32
6346 12916 4.428294 AGCCAAGCTCTAATATGCTGAA 57.572 40.909 0.00 0.00 39.71 3.02
6372 12942 1.902508 TCCAGACCACAGAAGATCACC 59.097 52.381 0.00 0.00 0.00 4.02
6379 12949 3.685139 GAGAACATCCAGACCACAGAA 57.315 47.619 0.00 0.00 0.00 3.02
6451 13021 4.438744 GCTGCGAGCAACCAAACTATATTT 60.439 41.667 0.00 0.00 41.89 1.40
6478 13048 1.378646 GCACCCCCAGAGCCTAAAC 60.379 63.158 0.00 0.00 0.00 2.01
6480 13050 1.431195 TTTGCACCCCCAGAGCCTAA 61.431 55.000 0.00 0.00 0.00 2.69
6507 13077 2.159382 TGCAGCCTAGCTAACCAAAAC 58.841 47.619 0.00 0.00 36.40 2.43
6556 13127 0.681564 CTGGCTAGGTCGAGGAGTGT 60.682 60.000 0.00 0.00 0.00 3.55
6562 13133 4.804108 CATTATTCTCTGGCTAGGTCGAG 58.196 47.826 0.00 0.00 0.00 4.04
6565 13136 3.558109 GGGCATTATTCTCTGGCTAGGTC 60.558 52.174 0.00 0.00 37.99 3.85
6566 13137 2.373502 GGGCATTATTCTCTGGCTAGGT 59.626 50.000 0.00 0.00 37.99 3.08
6585 13158 0.717224 CGTCGTGTTACCAATTCGGG 59.283 55.000 0.00 0.00 40.22 5.14
6605 13178 0.035725 TTCCCTCGTACGAGCTCAGA 60.036 55.000 34.54 24.50 40.69 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.