Multiple sequence alignment - TraesCS3D01G288600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G288600 chr3D 100.000 3014 0 0 2812 5825 397211724 397208711 0.000000e+00 5566.0
1 TraesCS3D01G288600 chr3D 100.000 2603 0 0 1 2603 397214535 397211933 0.000000e+00 4807.0
2 TraesCS3D01G288600 chr3D 82.857 140 12 4 5693 5825 397201146 397201012 1.330000e-21 115.0
3 TraesCS3D01G288600 chr3A 93.100 2087 110 17 2815 4899 516804215 516802161 0.000000e+00 3025.0
4 TraesCS3D01G288600 chr3A 90.364 1484 68 43 523 1959 516806703 516805248 0.000000e+00 1879.0
5 TraesCS3D01G288600 chr3A 85.261 631 38 27 5204 5825 516801730 516801146 3.000000e-167 599.0
6 TraesCS3D01G288600 chr3A 91.883 308 21 2 4900 5207 516802113 516801810 1.500000e-115 427.0
7 TraesCS3D01G288600 chr3A 94.942 257 10 1 222 475 516806962 516806706 3.270000e-107 399.0
8 TraesCS3D01G288600 chr3A 92.963 270 17 2 4634 4901 516796057 516795788 5.470000e-105 392.0
9 TraesCS3D01G288600 chr3A 94.048 252 13 2 2051 2300 516805201 516804950 1.180000e-101 381.0
10 TraesCS3D01G288600 chr3A 94.634 205 9 2 2399 2601 516804518 516804314 3.390000e-82 316.0
11 TraesCS3D01G288600 chr3A 85.185 135 16 3 5693 5825 516789691 516789559 1.020000e-27 135.0
12 TraesCS3D01G288600 chr3A 78.307 189 20 9 4908 5096 516794979 516794812 1.030000e-17 102.0
13 TraesCS3D01G288600 chr3A 100.000 35 0 0 1977 2011 516805246 516805212 1.350000e-06 65.8
14 TraesCS3D01G288600 chr3B 91.228 1881 79 45 421 2271 523157558 523155734 0.000000e+00 2481.0
15 TraesCS3D01G288600 chr3B 90.909 1705 81 28 3493 5147 523154211 523152531 0.000000e+00 2222.0
16 TraesCS3D01G288600 chr3B 90.469 703 43 6 2812 3493 523155077 523154378 0.000000e+00 905.0
17 TraesCS3D01G288600 chr3B 92.181 243 12 5 2361 2601 523155410 523155173 2.600000e-88 337.0
18 TraesCS3D01G288600 chr3B 92.647 136 6 3 5693 5825 523151495 523151361 5.960000e-45 193.0
19 TraesCS3D01G288600 chr3B 88.636 132 10 4 5187 5313 523152527 523152396 7.820000e-34 156.0
20 TraesCS3D01G288600 chr3B 93.069 101 6 1 5311 5410 523152353 523152253 4.700000e-31 147.0
21 TraesCS3D01G288600 chr3B 97.917 48 1 0 5628 5675 523152241 523152194 3.740000e-12 84.2
22 TraesCS3D01G288600 chr7B 90.421 261 16 4 4349 4606 610351978 610351724 9.350000e-88 335.0
23 TraesCS3D01G288600 chr7B 87.368 190 17 3 4611 4796 610351614 610351428 1.640000e-50 211.0
24 TraesCS3D01G288600 chr7D 93.233 133 8 1 5693 5825 561620761 561620630 1.660000e-45 195.0
25 TraesCS3D01G288600 chr7D 93.333 120 5 3 75 192 21093595 21093713 2.160000e-39 174.0
26 TraesCS3D01G288600 chr7D 78.017 232 36 9 4828 5058 561631275 561631058 1.320000e-26 132.0
27 TraesCS3D01G288600 chr5A 95.536 112 4 1 86 196 492896368 492896257 1.670000e-40 178.0
28 TraesCS3D01G288600 chr2A 94.828 116 3 2 81 193 58791630 58791515 1.670000e-40 178.0
29 TraesCS3D01G288600 chr2A 89.781 137 10 4 63 199 28208329 28208197 7.760000e-39 172.0
30 TraesCS3D01G288600 chr2A 90.299 134 8 5 82 211 7002247 7002379 2.790000e-38 171.0
31 TraesCS3D01G288600 chr2A 76.596 188 37 7 1109 1293 734887096 734887279 4.800000e-16 97.1
32 TraesCS3D01G288600 chr4D 80.833 240 33 9 1109 1340 446137583 446137817 6.000000e-40 176.0
33 TraesCS3D01G288600 chr4D 94.737 114 5 1 87 199 483110243 483110130 6.000000e-40 176.0
34 TraesCS3D01G288600 chr4B 80.591 237 39 7 1109 1340 558044405 558044639 6.000000e-40 176.0
35 TraesCS3D01G288600 chr1A 93.966 116 6 1 83 197 534536494 534536609 2.160000e-39 174.0
36 TraesCS3D01G288600 chr7A 92.623 122 5 4 87 204 89962474 89962353 7.760000e-39 172.0
37 TraesCS3D01G288600 chr7A 93.220 118 7 1 83 199 269960316 269960433 7.760000e-39 172.0
38 TraesCS3D01G288600 chr4A 80.252 238 38 9 1109 1340 21220235 21220001 2.790000e-38 171.0
39 TraesCS3D01G288600 chr2D 75.269 186 36 10 1109 1289 601596674 601596854 4.840000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G288600 chr3D 397208711 397214535 5824 True 5186.500 5566 100.0000 1 5825 2 chr3D.!!$R2 5824
1 TraesCS3D01G288600 chr3A 516801146 516806962 5816 True 886.475 3025 93.0290 222 5825 8 chr3A.!!$R3 5603
2 TraesCS3D01G288600 chr3A 516794812 516796057 1245 True 247.000 392 85.6350 4634 5096 2 chr3A.!!$R2 462
3 TraesCS3D01G288600 chr3B 523151361 523157558 6197 True 815.650 2481 92.1320 421 5825 8 chr3B.!!$R1 5404
4 TraesCS3D01G288600 chr7B 610351428 610351978 550 True 273.000 335 88.8945 4349 4796 2 chr7B.!!$R1 447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 509 0.320374 CAGTAACCTCCCGTCAGCAA 59.680 55.0 0.00 0.00 0.00 3.91 F
1385 1457 0.110238 CACGCACGGTTGAGATTTGG 60.110 55.0 0.00 0.00 0.00 3.28 F
1387 1459 0.165944 CGCACGGTTGAGATTTGGAC 59.834 55.0 0.00 0.00 0.00 4.02 F
1451 1528 0.179145 GTACTCGACGGATGGGTGTG 60.179 60.0 0.00 0.00 0.00 3.82 F
3266 3773 0.305313 CCTAGCTCTCGCAGTACGTC 59.695 60.0 0.00 0.00 44.19 4.34 F
4005 4679 0.030235 CCCAGCATAACGTCGATCGA 59.970 55.0 15.15 15.15 42.86 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1509 0.179145 CACACCCATCCGTCGAGTAC 60.179 60.000 0.00 0.0 0.00 2.73 R
3253 3760 0.392060 TGGCTAGACGTACTGCGAGA 60.392 55.000 0.00 0.0 44.77 4.04 R
3284 3791 1.449601 GGCTCGGCGGAAAGATTGA 60.450 57.895 7.21 0.0 0.00 2.57 R
3299 3806 1.933853 GTCGATGATAAACGCTTGGCT 59.066 47.619 0.00 0.0 0.00 4.75 R
4458 5151 1.164411 CGCCTGCCATGTTCAGTTAA 58.836 50.000 10.22 0.0 0.00 2.01 R
5463 7254 0.036306 AGGCCCTATTTTATCCCGCG 59.964 55.000 0.00 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.769835 TCAAATCAAAATGATCTAGGCCCT 58.230 37.500 0.00 0.00 35.76 5.19
24 25 6.197168 TCAAATCAAAATGATCTAGGCCCTT 58.803 36.000 0.00 0.00 35.76 3.95
25 26 6.669154 TCAAATCAAAATGATCTAGGCCCTTT 59.331 34.615 0.00 0.00 35.76 3.11
26 27 7.180766 TCAAATCAAAATGATCTAGGCCCTTTT 59.819 33.333 0.00 0.00 35.76 2.27
27 28 6.721704 ATCAAAATGATCTAGGCCCTTTTC 57.278 37.500 0.00 0.00 29.59 2.29
28 29 5.579047 TCAAAATGATCTAGGCCCTTTTCA 58.421 37.500 0.00 0.00 0.00 2.69
29 30 6.015918 TCAAAATGATCTAGGCCCTTTTCAA 58.984 36.000 0.00 0.00 0.00 2.69
30 31 6.669154 TCAAAATGATCTAGGCCCTTTTCAAT 59.331 34.615 0.00 0.00 0.00 2.57
31 32 7.838696 TCAAAATGATCTAGGCCCTTTTCAATA 59.161 33.333 0.00 0.00 0.00 1.90
32 33 7.588497 AAATGATCTAGGCCCTTTTCAATAC 57.412 36.000 0.00 0.00 0.00 1.89
33 34 5.708736 TGATCTAGGCCCTTTTCAATACA 57.291 39.130 0.00 0.00 0.00 2.29
34 35 5.684704 TGATCTAGGCCCTTTTCAATACAG 58.315 41.667 0.00 0.00 0.00 2.74
35 36 5.191722 TGATCTAGGCCCTTTTCAATACAGT 59.808 40.000 0.00 0.00 0.00 3.55
36 37 6.385759 TGATCTAGGCCCTTTTCAATACAGTA 59.614 38.462 0.00 0.00 0.00 2.74
37 38 6.824958 TCTAGGCCCTTTTCAATACAGTAT 57.175 37.500 0.00 0.00 0.00 2.12
38 39 7.924358 TCTAGGCCCTTTTCAATACAGTATA 57.076 36.000 0.00 0.00 0.00 1.47
39 40 8.326765 TCTAGGCCCTTTTCAATACAGTATAA 57.673 34.615 0.00 0.00 0.00 0.98
40 41 8.945193 TCTAGGCCCTTTTCAATACAGTATAAT 58.055 33.333 0.00 0.00 0.00 1.28
41 42 9.574516 CTAGGCCCTTTTCAATACAGTATAATT 57.425 33.333 0.00 0.00 0.00 1.40
42 43 8.237811 AGGCCCTTTTCAATACAGTATAATTG 57.762 34.615 0.00 0.00 34.96 2.32
43 44 8.058847 AGGCCCTTTTCAATACAGTATAATTGA 58.941 33.333 0.00 0.00 39.66 2.57
44 45 8.691797 GGCCCTTTTCAATACAGTATAATTGAA 58.308 33.333 6.03 6.03 45.59 2.69
45 46 9.516314 GCCCTTTTCAATACAGTATAATTGAAC 57.484 33.333 8.81 0.00 46.41 3.18
52 53 9.836864 TCAATACAGTATAATTGAACATGCTCT 57.163 29.630 0.00 0.00 38.74 4.09
54 55 9.836864 AATACAGTATAATTGAACATGCTCTCA 57.163 29.630 0.00 0.00 0.00 3.27
57 58 9.265901 ACAGTATAATTGAACATGCTCTCATAC 57.734 33.333 0.00 0.00 0.00 2.39
58 59 9.264719 CAGTATAATTGAACATGCTCTCATACA 57.735 33.333 0.00 0.00 0.00 2.29
59 60 9.265901 AGTATAATTGAACATGCTCTCATACAC 57.734 33.333 0.00 0.00 0.00 2.90
60 61 5.475273 AATTGAACATGCTCTCATACACG 57.525 39.130 0.00 0.00 0.00 4.49
61 62 2.270923 TGAACATGCTCTCATACACGC 58.729 47.619 0.00 0.00 0.00 5.34
62 63 2.094026 TGAACATGCTCTCATACACGCT 60.094 45.455 0.00 0.00 0.00 5.07
63 64 2.680312 ACATGCTCTCATACACGCTT 57.320 45.000 0.00 0.00 0.00 4.68
64 65 3.801114 ACATGCTCTCATACACGCTTA 57.199 42.857 0.00 0.00 0.00 3.09
65 66 3.711086 ACATGCTCTCATACACGCTTAG 58.289 45.455 0.00 0.00 0.00 2.18
66 67 2.871182 TGCTCTCATACACGCTTAGG 57.129 50.000 0.00 0.00 0.00 2.69
67 68 2.100197 TGCTCTCATACACGCTTAGGT 58.900 47.619 0.00 0.00 0.00 3.08
68 69 2.496070 TGCTCTCATACACGCTTAGGTT 59.504 45.455 0.00 0.00 0.00 3.50
69 70 3.056107 TGCTCTCATACACGCTTAGGTTT 60.056 43.478 0.00 0.00 0.00 3.27
70 71 3.933332 GCTCTCATACACGCTTAGGTTTT 59.067 43.478 0.00 0.00 0.00 2.43
71 72 4.392138 GCTCTCATACACGCTTAGGTTTTT 59.608 41.667 0.00 0.00 0.00 1.94
72 73 5.579511 GCTCTCATACACGCTTAGGTTTTTA 59.420 40.000 0.00 0.00 0.00 1.52
73 74 6.091713 GCTCTCATACACGCTTAGGTTTTTAA 59.908 38.462 0.00 0.00 0.00 1.52
74 75 7.201617 GCTCTCATACACGCTTAGGTTTTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
75 76 9.309516 CTCTCATACACGCTTAGGTTTTTAATA 57.690 33.333 0.00 0.00 0.00 0.98
76 77 9.090692 TCTCATACACGCTTAGGTTTTTAATAC 57.909 33.333 0.00 0.00 0.00 1.89
77 78 8.774890 TCATACACGCTTAGGTTTTTAATACA 57.225 30.769 0.00 0.00 0.00 2.29
78 79 8.875803 TCATACACGCTTAGGTTTTTAATACAG 58.124 33.333 0.00 0.00 0.00 2.74
79 80 8.662141 CATACACGCTTAGGTTTTTAATACAGT 58.338 33.333 0.00 0.00 0.00 3.55
80 81 9.874205 ATACACGCTTAGGTTTTTAATACAGTA 57.126 29.630 0.00 0.00 0.00 2.74
81 82 8.782339 ACACGCTTAGGTTTTTAATACAGTAT 57.218 30.769 0.00 0.00 0.00 2.12
82 83 9.874205 ACACGCTTAGGTTTTTAATACAGTATA 57.126 29.630 0.00 0.00 0.00 1.47
97 98 8.937207 AATACAGTATATCTTACTCCTCCGTT 57.063 34.615 0.00 0.00 0.00 4.44
98 99 6.880942 ACAGTATATCTTACTCCTCCGTTC 57.119 41.667 0.00 0.00 0.00 3.95
99 100 5.769162 ACAGTATATCTTACTCCTCCGTTCC 59.231 44.000 0.00 0.00 0.00 3.62
100 101 5.002516 AGTATATCTTACTCCTCCGTTCCG 58.997 45.833 0.00 0.00 0.00 4.30
101 102 2.431954 ATCTTACTCCTCCGTTCCGA 57.568 50.000 0.00 0.00 0.00 4.55
102 103 2.205022 TCTTACTCCTCCGTTCCGAA 57.795 50.000 0.00 0.00 0.00 4.30
103 104 2.731572 TCTTACTCCTCCGTTCCGAAT 58.268 47.619 0.00 0.00 0.00 3.34
104 105 3.094572 TCTTACTCCTCCGTTCCGAATT 58.905 45.455 0.00 0.00 0.00 2.17
105 106 4.272489 TCTTACTCCTCCGTTCCGAATTA 58.728 43.478 0.00 0.00 0.00 1.40
106 107 2.955477 ACTCCTCCGTTCCGAATTAC 57.045 50.000 0.00 0.00 0.00 1.89
107 108 2.454538 ACTCCTCCGTTCCGAATTACT 58.545 47.619 0.00 0.00 0.00 2.24
108 109 2.830321 ACTCCTCCGTTCCGAATTACTT 59.170 45.455 0.00 0.00 0.00 2.24
109 110 3.187700 CTCCTCCGTTCCGAATTACTTG 58.812 50.000 0.00 0.00 0.00 3.16
110 111 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
111 112 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
112 113 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
113 114 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
114 115 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
115 116 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
116 117 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
117 118 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
118 119 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
119 120 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
120 121 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
121 122 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
122 123 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
123 124 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
124 125 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
125 126 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
126 127 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
127 128 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
128 129 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
129 130 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
130 131 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
131 132 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
132 133 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
133 134 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
134 135 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
135 136 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
136 137 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
137 138 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
138 139 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
164 165 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
165 166 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
166 167 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
167 168 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
168 169 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
169 170 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
170 171 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
171 172 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
172 173 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
173 174 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
174 175 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
175 176 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
176 177 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
177 178 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
178 179 4.092821 CCATTTCTGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
179 180 5.390461 CCATTTCTGCGACGAGTAATTTGAA 60.390 40.000 0.00 0.00 0.00 2.69
180 181 5.660629 TTTCTGCGACGAGTAATTTGAAA 57.339 34.783 0.00 0.00 0.00 2.69
181 182 5.856126 TTCTGCGACGAGTAATTTGAAAT 57.144 34.783 0.00 0.00 0.00 2.17
182 183 5.203358 TCTGCGACGAGTAATTTGAAATG 57.797 39.130 0.00 0.00 0.00 2.32
183 184 4.092821 TCTGCGACGAGTAATTTGAAATGG 59.907 41.667 0.00 0.00 0.00 3.16
184 185 3.997681 TGCGACGAGTAATTTGAAATGGA 59.002 39.130 0.00 0.00 0.00 3.41
185 186 4.634004 TGCGACGAGTAATTTGAAATGGAT 59.366 37.500 0.00 0.00 0.00 3.41
186 187 4.963953 GCGACGAGTAATTTGAAATGGATG 59.036 41.667 0.00 0.00 0.00 3.51
187 188 5.220586 GCGACGAGTAATTTGAAATGGATGA 60.221 40.000 0.00 0.00 0.00 2.92
188 189 6.674519 GCGACGAGTAATTTGAAATGGATGAA 60.675 38.462 0.00 0.00 0.00 2.57
189 190 6.901887 CGACGAGTAATTTGAAATGGATGAAG 59.098 38.462 0.00 0.00 0.00 3.02
190 191 7.413000 CGACGAGTAATTTGAAATGGATGAAGT 60.413 37.037 0.00 0.00 0.00 3.01
191 192 8.786826 ACGAGTAATTTGAAATGGATGAAGTA 57.213 30.769 0.00 0.00 0.00 2.24
192 193 9.396022 ACGAGTAATTTGAAATGGATGAAGTAT 57.604 29.630 0.00 0.00 0.00 2.12
201 202 8.830201 TGAAATGGATGAAGTATTTGTTTTGG 57.170 30.769 0.00 0.00 0.00 3.28
202 203 7.877097 TGAAATGGATGAAGTATTTGTTTTGGG 59.123 33.333 0.00 0.00 0.00 4.12
203 204 6.933514 ATGGATGAAGTATTTGTTTTGGGT 57.066 33.333 0.00 0.00 0.00 4.51
204 205 6.739331 TGGATGAAGTATTTGTTTTGGGTT 57.261 33.333 0.00 0.00 0.00 4.11
205 206 7.841282 TGGATGAAGTATTTGTTTTGGGTTA 57.159 32.000 0.00 0.00 0.00 2.85
206 207 8.251383 TGGATGAAGTATTTGTTTTGGGTTAA 57.749 30.769 0.00 0.00 0.00 2.01
207 208 8.145122 TGGATGAAGTATTTGTTTTGGGTTAAC 58.855 33.333 0.00 0.00 0.00 2.01
208 209 8.364894 GGATGAAGTATTTGTTTTGGGTTAACT 58.635 33.333 5.42 0.00 0.00 2.24
217 218 7.541122 TTGTTTTGGGTTAACTAAAATGTGC 57.459 32.000 17.77 10.00 0.00 4.57
218 219 6.640518 TGTTTTGGGTTAACTAAAATGTGCA 58.359 32.000 17.77 11.62 0.00 4.57
219 220 7.275920 TGTTTTGGGTTAACTAAAATGTGCAT 58.724 30.769 17.77 0.00 0.00 3.96
220 221 7.439655 TGTTTTGGGTTAACTAAAATGTGCATC 59.560 33.333 17.77 8.86 0.00 3.91
262 263 3.124128 CGAATAAGATCCGTGCATCCATG 59.876 47.826 0.00 0.00 0.00 3.66
277 278 2.259012 TCCATGGTAAACCTGGTACGT 58.741 47.619 12.58 0.00 36.40 3.57
327 328 5.977129 GCTTTTGCACAGTTACTTGTACAAT 59.023 36.000 9.13 2.49 46.58 2.71
349 350 3.473923 TGATCCTAATTGCATGCGAGA 57.526 42.857 14.20 5.42 0.00 4.04
380 381 0.395862 TTTCCGGCCACAACTTTCCA 60.396 50.000 2.24 0.00 0.00 3.53
392 393 1.080093 CTTTCCAGTGCCGTCGCTA 60.080 57.895 0.00 0.00 35.36 4.26
393 394 0.669318 CTTTCCAGTGCCGTCGCTAA 60.669 55.000 0.00 0.00 35.36 3.09
461 465 1.433879 GCACGTACGCTCAGATCCT 59.566 57.895 16.72 0.00 0.00 3.24
493 497 4.388499 CGGGCGCCACAGTAACCT 62.388 66.667 30.85 0.00 0.00 3.50
494 498 2.436115 GGGCGCCACAGTAACCTC 60.436 66.667 30.85 1.84 0.00 3.85
495 499 2.436115 GGCGCCACAGTAACCTCC 60.436 66.667 24.80 0.00 0.00 4.30
504 509 0.320374 CAGTAACCTCCCGTCAGCAA 59.680 55.000 0.00 0.00 0.00 3.91
505 510 0.608640 AGTAACCTCCCGTCAGCAAG 59.391 55.000 0.00 0.00 0.00 4.01
710 727 1.072505 ACGTACAAACAGGGCAGGG 59.927 57.895 0.00 0.00 0.00 4.45
711 728 1.674322 CGTACAAACAGGGCAGGGG 60.674 63.158 0.00 0.00 0.00 4.79
712 729 1.977009 GTACAAACAGGGCAGGGGC 60.977 63.158 0.00 0.00 40.13 5.80
713 730 3.561120 TACAAACAGGGCAGGGGCG 62.561 63.158 0.00 0.00 42.47 6.13
750 767 1.451387 CCCTCCGCATAACCCACAC 60.451 63.158 0.00 0.00 0.00 3.82
751 768 1.298340 CCTCCGCATAACCCACACA 59.702 57.895 0.00 0.00 0.00 3.72
752 769 1.024579 CCTCCGCATAACCCACACAC 61.025 60.000 0.00 0.00 0.00 3.82
753 770 0.321210 CTCCGCATAACCCACACACA 60.321 55.000 0.00 0.00 0.00 3.72
846 863 2.425592 CCACACACCGAGCAGGAA 59.574 61.111 5.19 0.00 45.00 3.36
881 898 3.074281 CGCCCACCCTCTGGTTTA 58.926 61.111 0.00 0.00 44.75 2.01
936 973 1.449246 CTCTGCTTCGCTCCCAAGG 60.449 63.158 0.00 0.00 0.00 3.61
937 974 3.130160 CTGCTTCGCTCCCAAGGC 61.130 66.667 0.00 0.00 0.00 4.35
938 975 4.722700 TGCTTCGCTCCCAAGGCC 62.723 66.667 0.00 0.00 0.00 5.19
940 977 4.394712 CTTCGCTCCCAAGGCCGT 62.395 66.667 0.00 0.00 0.00 5.68
941 978 4.388499 TTCGCTCCCAAGGCCGTC 62.388 66.667 0.00 0.00 0.00 4.79
947 984 4.547367 CCCAAGGCCGTCCGGATC 62.547 72.222 7.81 0.00 37.50 3.36
948 985 4.547367 CCAAGGCCGTCCGGATCC 62.547 72.222 7.81 9.97 37.50 3.36
976 1027 4.899239 GCGATCTGGGTCTGGGCG 62.899 72.222 0.00 0.00 0.00 6.13
1122 1180 2.184579 GCCGAGACCTTCTTCCCG 59.815 66.667 0.00 0.00 0.00 5.14
1350 1408 1.135053 GGCCTCTGTACGTTCTTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
1385 1457 0.110238 CACGCACGGTTGAGATTTGG 60.110 55.000 0.00 0.00 0.00 3.28
1386 1458 0.250124 ACGCACGGTTGAGATTTGGA 60.250 50.000 0.00 0.00 0.00 3.53
1387 1459 0.165944 CGCACGGTTGAGATTTGGAC 59.834 55.000 0.00 0.00 0.00 4.02
1389 1461 1.508632 CACGGTTGAGATTTGGACGT 58.491 50.000 0.00 0.00 0.00 4.34
1390 1462 2.679450 CACGGTTGAGATTTGGACGTA 58.321 47.619 0.00 0.00 0.00 3.57
1391 1463 2.410730 CACGGTTGAGATTTGGACGTAC 59.589 50.000 0.00 0.00 0.00 3.67
1392 1464 1.652124 CGGTTGAGATTTGGACGTACG 59.348 52.381 15.01 15.01 0.00 3.67
1393 1465 2.680577 GGTTGAGATTTGGACGTACGT 58.319 47.619 23.04 23.04 0.00 3.57
1394 1466 3.670359 CGGTTGAGATTTGGACGTACGTA 60.670 47.826 22.87 5.89 0.00 3.57
1395 1467 4.427312 GGTTGAGATTTGGACGTACGTAT 58.573 43.478 22.87 11.26 0.00 3.06
1396 1468 5.581605 GGTTGAGATTTGGACGTACGTATA 58.418 41.667 22.87 10.53 0.00 1.47
1397 1469 5.456822 GGTTGAGATTTGGACGTACGTATAC 59.543 44.000 22.87 14.96 0.00 1.47
1425 1502 2.307309 GCATGCGCGCCGACTAATA 61.307 57.895 30.77 7.41 0.00 0.98
1427 1504 1.624487 CATGCGCGCCGACTAATATA 58.376 50.000 30.77 5.62 0.00 0.86
1428 1505 1.989864 CATGCGCGCCGACTAATATAA 59.010 47.619 30.77 4.99 0.00 0.98
1429 1506 2.357327 TGCGCGCCGACTAATATAAT 57.643 45.000 30.77 0.00 0.00 1.28
1431 1508 3.061322 TGCGCGCCGACTAATATAATTT 58.939 40.909 30.77 0.00 0.00 1.82
1432 1509 3.120820 TGCGCGCCGACTAATATAATTTG 60.121 43.478 30.77 0.00 0.00 2.32
1434 1511 4.090354 GCGCGCCGACTAATATAATTTGTA 59.910 41.667 23.24 0.00 0.00 2.41
1435 1512 5.535616 CGCGCCGACTAATATAATTTGTAC 58.464 41.667 0.00 0.00 0.00 2.90
1436 1513 5.344128 CGCGCCGACTAATATAATTTGTACT 59.656 40.000 0.00 0.00 0.00 2.73
1437 1514 6.452090 CGCGCCGACTAATATAATTTGTACTC 60.452 42.308 0.00 0.00 0.00 2.59
1438 1515 6.452090 GCGCCGACTAATATAATTTGTACTCG 60.452 42.308 0.00 0.00 0.00 4.18
1439 1516 6.798476 CGCCGACTAATATAATTTGTACTCGA 59.202 38.462 0.00 0.00 0.00 4.04
1440 1517 7.201215 CGCCGACTAATATAATTTGTACTCGAC 60.201 40.741 0.00 0.00 0.00 4.20
1441 1518 7.201215 GCCGACTAATATAATTTGTACTCGACG 60.201 40.741 0.00 0.00 0.00 5.12
1442 1519 7.269937 CCGACTAATATAATTTGTACTCGACGG 59.730 40.741 0.00 0.00 0.00 4.79
1443 1520 8.011673 CGACTAATATAATTTGTACTCGACGGA 58.988 37.037 0.00 0.00 0.00 4.69
1444 1521 9.837525 GACTAATATAATTTGTACTCGACGGAT 57.162 33.333 0.00 0.00 0.00 4.18
1445 1522 9.622004 ACTAATATAATTTGTACTCGACGGATG 57.378 33.333 0.00 0.00 0.00 3.51
1449 1526 0.528924 TTGTACTCGACGGATGGGTG 59.471 55.000 0.00 0.00 0.00 4.61
1451 1528 0.179145 GTACTCGACGGATGGGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
1648 1727 1.811266 CACCGGCATCTTCCAGACG 60.811 63.158 0.00 0.00 0.00 4.18
1679 1760 4.954826 GCGTCTTCAGGTATACCCCTATAT 59.045 45.833 18.65 0.00 36.42 0.86
1683 1764 3.028850 TCAGGTATACCCCTATATGCGC 58.971 50.000 18.65 0.00 36.42 6.09
1708 1807 3.313526 CCAAATCATCAGTCATTCCGTCC 59.686 47.826 0.00 0.00 0.00 4.79
1709 1808 2.515926 ATCATCAGTCATTCCGTCCG 57.484 50.000 0.00 0.00 0.00 4.79
1710 1809 1.182667 TCATCAGTCATTCCGTCCGT 58.817 50.000 0.00 0.00 0.00 4.69
1711 1810 1.548719 TCATCAGTCATTCCGTCCGTT 59.451 47.619 0.00 0.00 0.00 4.44
1749 1851 7.828508 TTAACTAACTGACTGTGGAGAGTTA 57.171 36.000 0.00 0.00 31.25 2.24
1750 1852 6.919775 AACTAACTGACTGTGGAGAGTTAT 57.080 37.500 0.00 0.00 32.04 1.89
1937 2039 4.801330 TCAAATACAGACACGAGGTGAT 57.199 40.909 2.29 0.00 36.96 3.06
1941 2043 1.178276 ACAGACACGAGGTGATCTCC 58.822 55.000 5.64 5.64 39.30 3.71
1959 2061 3.055167 TCTCCCTTTCAATTCGCTCATCA 60.055 43.478 0.00 0.00 0.00 3.07
1960 2062 3.881688 CTCCCTTTCAATTCGCTCATCAT 59.118 43.478 0.00 0.00 0.00 2.45
1961 2063 3.879295 TCCCTTTCAATTCGCTCATCATC 59.121 43.478 0.00 0.00 0.00 2.92
1962 2064 3.004106 CCCTTTCAATTCGCTCATCATCC 59.996 47.826 0.00 0.00 0.00 3.51
1963 2065 3.004106 CCTTTCAATTCGCTCATCATCCC 59.996 47.826 0.00 0.00 0.00 3.85
1964 2066 3.280197 TTCAATTCGCTCATCATCCCA 57.720 42.857 0.00 0.00 0.00 4.37
1965 2067 2.564771 TCAATTCGCTCATCATCCCAC 58.435 47.619 0.00 0.00 0.00 4.61
1966 2068 1.262417 CAATTCGCTCATCATCCCACG 59.738 52.381 0.00 0.00 0.00 4.94
1967 2069 0.465705 ATTCGCTCATCATCCCACGT 59.534 50.000 0.00 0.00 0.00 4.49
1968 2070 1.107945 TTCGCTCATCATCCCACGTA 58.892 50.000 0.00 0.00 0.00 3.57
1969 2071 0.668535 TCGCTCATCATCCCACGTAG 59.331 55.000 0.00 0.00 0.00 3.51
1970 2072 0.668535 CGCTCATCATCCCACGTAGA 59.331 55.000 0.00 0.00 0.00 2.59
1971 2073 1.600663 CGCTCATCATCCCACGTAGAC 60.601 57.143 0.00 0.00 0.00 2.59
1972 2074 1.600663 GCTCATCATCCCACGTAGACG 60.601 57.143 0.00 0.00 46.33 4.18
2026 2141 2.280797 GGCACTGCACAACGAGGA 60.281 61.111 2.82 0.00 0.00 3.71
2027 2142 2.607892 GGCACTGCACAACGAGGAC 61.608 63.158 2.82 0.00 0.00 3.85
2028 2143 1.595382 GCACTGCACAACGAGGACT 60.595 57.895 0.00 0.00 0.00 3.85
2029 2144 1.835483 GCACTGCACAACGAGGACTG 61.835 60.000 0.00 0.00 0.00 3.51
2030 2145 1.069765 ACTGCACAACGAGGACTGG 59.930 57.895 0.00 0.00 0.00 4.00
2031 2146 1.069765 CTGCACAACGAGGACTGGT 59.930 57.895 0.00 0.00 0.00 4.00
2032 2147 0.532862 CTGCACAACGAGGACTGGTT 60.533 55.000 0.00 0.00 31.62 3.67
2049 2164 1.757699 GGTTCTTCGCCACTCCTCTAT 59.242 52.381 0.00 0.00 0.00 1.98
2205 2321 1.583495 GGAAGTTGCTGTAACCGCCC 61.583 60.000 4.96 1.13 40.24 6.13
2230 2346 3.431905 GGAACTTCTCCGAGGAATAACCC 60.432 52.174 0.00 0.00 35.02 4.11
2247 2363 8.406297 GGAATAACCCTGTATAGCAAGAAAAAG 58.594 37.037 0.00 0.00 0.00 2.27
2293 2439 7.605410 AATAACCGTGAACGTATGAATTTCT 57.395 32.000 1.75 0.00 37.74 2.52
2323 2511 3.735037 GAAGGATCACCGTCGGCCC 62.735 68.421 12.28 7.81 41.83 5.80
2348 2547 4.163268 TGCACACACACCCATATACTGTAT 59.837 41.667 5.53 5.53 0.00 2.29
2350 2549 5.588648 GCACACACACCCATATACTGTATTT 59.411 40.000 5.52 0.00 0.00 1.40
2351 2550 6.764085 GCACACACACCCATATACTGTATTTA 59.236 38.462 5.52 0.00 0.00 1.40
2354 2553 9.555727 ACACACACCCATATACTGTATTTATTC 57.444 33.333 5.52 0.00 0.00 1.75
2355 2554 9.554395 CACACACCCATATACTGTATTTATTCA 57.446 33.333 5.52 0.00 0.00 2.57
2377 2858 5.909054 TCAAGTGTAAGTAACGTACGAACAG 59.091 40.000 24.41 5.05 31.86 3.16
2387 2868 2.614983 ACGTACGAACAGGCAAACAAAT 59.385 40.909 24.41 0.00 0.00 2.32
2388 2869 3.065648 ACGTACGAACAGGCAAACAAATT 59.934 39.130 24.41 0.00 0.00 1.82
2389 2870 4.039032 CGTACGAACAGGCAAACAAATTT 58.961 39.130 10.44 0.00 0.00 1.82
2390 2871 4.085822 CGTACGAACAGGCAAACAAATTTG 60.086 41.667 16.67 16.67 46.81 2.32
2489 2972 0.878416 GTTCTACGCCCATTTGTGCA 59.122 50.000 0.00 0.00 0.00 4.57
2535 3018 2.222707 GCCACGTTGTTGCTTTTGAAAC 60.223 45.455 0.00 0.00 38.46 2.78
2582 3065 1.064166 AGCCATGGGATTCTCAACTGG 60.064 52.381 15.13 2.27 0.00 4.00
2601 3084 3.251484 TGGACCATCTGTCTCCTCTTTT 58.749 45.455 0.00 0.00 43.89 2.27
2928 3434 8.454570 AATTCAGAAAAAGAAAATGCCACATT 57.545 26.923 0.00 0.00 0.00 2.71
3054 3560 3.118519 TCGCCCTCCATTTACCTACTTTC 60.119 47.826 0.00 0.00 0.00 2.62
3056 3562 4.686122 CGCCCTCCATTTACCTACTTTCAT 60.686 45.833 0.00 0.00 0.00 2.57
3059 3565 6.431234 GCCCTCCATTTACCTACTTTCATATG 59.569 42.308 0.00 0.00 0.00 1.78
3072 3578 6.743575 ACTTTCATATGTGCTGTTAAGACC 57.256 37.500 1.90 0.00 0.00 3.85
3076 3582 6.048732 TCATATGTGCTGTTAAGACCTGAA 57.951 37.500 1.90 0.00 0.00 3.02
3112 3619 2.903784 TCAGTTTCTGCCTGCCTAACTA 59.096 45.455 0.00 0.00 0.00 2.24
3126 3633 4.202419 TGCCTAACTACACCATGTCTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
3133 3640 1.603802 CACCATGTCTTTGTTCGCTGT 59.396 47.619 0.00 0.00 0.00 4.40
3166 3673 2.716424 TGGTGACCTCAAGAAAGGGATT 59.284 45.455 2.11 0.00 41.04 3.01
3253 3760 2.676748 CTCTTGTCTGGGATCCTAGCT 58.323 52.381 19.97 0.00 0.00 3.32
3266 3773 0.305313 CCTAGCTCTCGCAGTACGTC 59.695 60.000 0.00 0.00 44.19 4.34
3270 3777 0.316360 GCTCTCGCAGTACGTCTAGC 60.316 60.000 0.00 0.00 44.19 3.42
3274 3781 0.380733 TCGCAGTACGTCTAGCCATG 59.619 55.000 0.00 0.00 44.19 3.66
3293 3800 5.741040 GCCATGACGAATTCTTCAATCTTTC 59.259 40.000 17.46 2.61 0.00 2.62
3298 3805 3.685058 GAATTCTTCAATCTTTCCGCCG 58.315 45.455 0.00 0.00 0.00 6.46
3299 3806 2.465860 TTCTTCAATCTTTCCGCCGA 57.534 45.000 0.00 0.00 0.00 5.54
3496 4170 3.076621 TCACCACAGGTACGTACTACTG 58.923 50.000 24.07 23.26 32.11 2.74
3511 4185 6.379417 ACGTACTACTGCTTAGGATTAAACCT 59.621 38.462 9.50 9.50 43.32 3.50
3514 4188 3.621558 ACTGCTTAGGATTAAACCTGCC 58.378 45.455 14.25 3.43 40.81 4.85
3515 4189 3.010138 ACTGCTTAGGATTAAACCTGCCA 59.990 43.478 14.25 7.41 40.81 4.92
3516 4190 3.620488 TGCTTAGGATTAAACCTGCCAG 58.380 45.455 14.25 8.41 40.81 4.85
3568 4242 1.392853 CAAGAGAGCGACATGTCTTGC 59.607 52.381 22.95 18.99 41.77 4.01
3646 4320 1.446272 CTTCTCCAAGTCGGCGGTC 60.446 63.158 7.21 0.31 33.14 4.79
3916 4590 1.202533 GGCCTTAGCGCATCAGTAAGA 60.203 52.381 11.47 0.00 41.24 2.10
3918 4592 2.285488 GCCTTAGCGCATCAGTAAGAAC 59.715 50.000 11.47 0.74 0.00 3.01
3989 4663 1.153127 GTGGTGACCGTGTTTCCCA 60.153 57.895 0.00 0.00 0.00 4.37
3993 4667 0.889186 GTGACCGTGTTTCCCAGCAT 60.889 55.000 0.00 0.00 0.00 3.79
4005 4679 0.030235 CCCAGCATAACGTCGATCGA 59.970 55.000 15.15 15.15 42.86 3.59
4006 4680 1.335964 CCCAGCATAACGTCGATCGAT 60.336 52.381 22.50 8.10 42.86 3.59
4007 4681 2.394708 CCAGCATAACGTCGATCGATT 58.605 47.619 22.50 14.84 42.86 3.34
4008 4682 2.153817 CCAGCATAACGTCGATCGATTG 59.846 50.000 22.50 18.70 42.86 2.67
4243 4918 2.807045 GGTGAGCAGAGCACGACG 60.807 66.667 0.00 0.00 37.13 5.12
4251 4926 3.173240 GAGCACGACGACGCCTTC 61.173 66.667 7.30 0.00 43.96 3.46
4253 4928 3.173240 GCACGACGACGCCTTCTC 61.173 66.667 7.30 0.00 43.96 2.87
4254 4929 2.561885 CACGACGACGCCTTCTCT 59.438 61.111 7.30 0.00 43.96 3.10
4273 4948 9.579768 CCTTCTCTTAGGTTTATGATCATATCG 57.420 37.037 16.06 1.35 0.00 2.92
4295 4976 7.389603 TCGCGTAATTGAGATGTTATACTTG 57.610 36.000 5.77 0.00 0.00 3.16
4297 4978 6.292114 CGCGTAATTGAGATGTTATACTTGCA 60.292 38.462 0.00 0.00 0.00 4.08
4325 5017 5.835582 AGGATTTTGAGATGGGTTGAAGAT 58.164 37.500 0.00 0.00 0.00 2.40
4406 5098 7.469537 TGGTGGTAATTAACATTTAACCCTG 57.530 36.000 6.46 0.00 0.00 4.45
4419 5111 6.322201 ACATTTAACCCTGCCATTTCATCTAG 59.678 38.462 0.00 0.00 0.00 2.43
4420 5112 5.450818 TTAACCCTGCCATTTCATCTAGT 57.549 39.130 0.00 0.00 0.00 2.57
4421 5113 6.569127 TTAACCCTGCCATTTCATCTAGTA 57.431 37.500 0.00 0.00 0.00 1.82
4422 5114 4.696479 ACCCTGCCATTTCATCTAGTAG 57.304 45.455 0.00 0.00 0.00 2.57
4458 5151 5.390567 GGCGTCGATCATTAACTTTTTGACT 60.391 40.000 0.00 0.00 0.00 3.41
4646 5451 2.434884 ATGTCGTGCTCTTGGCGG 60.435 61.111 0.00 0.00 45.43 6.13
4826 5635 1.063806 GGATGCAGCGAAGTATAGCG 58.936 55.000 0.00 0.00 38.61 4.26
4836 5645 2.718027 CGAAGTATAGCGGCGTTTAGAC 59.282 50.000 9.37 9.32 0.00 2.59
4859 5668 4.512944 CAGTGTGGATGTAGATATTGTGGC 59.487 45.833 0.00 0.00 0.00 5.01
4906 6564 5.312079 AGAAGATGCATAAGTAGATTGGGC 58.688 41.667 0.00 0.00 0.00 5.36
4935 6593 2.289882 TGGACTCTGGATGTGCTGAAAG 60.290 50.000 0.00 0.00 0.00 2.62
4955 6613 5.344743 AAGCTGTATCTCGAAAGGATTCA 57.655 39.130 0.00 0.00 35.15 2.57
4959 6617 3.388024 TGTATCTCGAAAGGATTCAGGGG 59.612 47.826 0.00 0.00 35.15 4.79
4972 6630 0.178876 TCAGGGGAGGTTCATGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
5116 6774 6.034898 CGTATCGGGTTTACGTTGTAGAATTT 59.965 38.462 0.00 0.00 38.06 1.82
5157 6815 9.577222 TTCCATTGCTAGATGATGAATAAATCA 57.423 29.630 0.00 0.00 43.67 2.57
5183 6841 2.237143 TCCTCTGCTACAAAGTGATGGG 59.763 50.000 0.00 0.00 0.00 4.00
5207 6865 6.014156 GGGGAAGTCATGCATCTAAGTAGTAT 60.014 42.308 0.00 0.00 0.00 2.12
5208 6866 7.093992 GGGAAGTCATGCATCTAAGTAGTATC 58.906 42.308 0.00 0.00 0.00 2.24
5209 6867 6.804295 GGAAGTCATGCATCTAAGTAGTATCG 59.196 42.308 0.00 0.00 0.00 2.92
5210 6868 6.885952 AGTCATGCATCTAAGTAGTATCGT 57.114 37.500 0.00 0.00 0.00 3.73
5211 6869 6.673106 AGTCATGCATCTAAGTAGTATCGTG 58.327 40.000 0.00 0.00 0.00 4.35
5213 6871 5.535030 TCATGCATCTAAGTAGTATCGTGGT 59.465 40.000 0.00 0.00 0.00 4.16
5214 6872 5.183014 TGCATCTAAGTAGTATCGTGGTG 57.817 43.478 0.00 0.00 0.00 4.17
5215 6873 4.643334 TGCATCTAAGTAGTATCGTGGTGT 59.357 41.667 0.00 0.00 0.00 4.16
5216 6874 5.213675 GCATCTAAGTAGTATCGTGGTGTC 58.786 45.833 0.00 0.00 0.00 3.67
5234 6976 9.061610 CGTGGTGTCAAAAATGTCTTATATTTC 57.938 33.333 0.00 0.00 0.00 2.17
5254 6996 2.882761 TCGATACGAAGGGAGTACCATG 59.117 50.000 0.00 0.00 43.89 3.66
5257 6999 4.276678 CGATACGAAGGGAGTACCATGTAA 59.723 45.833 0.00 0.00 43.89 2.41
5262 7004 5.301298 ACGAAGGGAGTACCATGTAATAGAC 59.699 44.000 0.00 0.00 43.89 2.59
5352 7142 0.028505 CGATGGTGTTATGCTGCTGC 59.971 55.000 8.89 8.89 40.20 5.25
5386 7177 5.111989 TCGTCAGCTTATTTGGATCTCTTG 58.888 41.667 0.00 0.00 0.00 3.02
5395 7186 3.407424 TTGGATCTCTTGTGTGTCCAG 57.593 47.619 0.00 0.00 39.86 3.86
5407 7198 2.427453 GTGTGTCCAGACGTATCTCCAT 59.573 50.000 0.00 0.00 30.42 3.41
5412 7203 0.598562 CAGACGTATCTCCATCCCCG 59.401 60.000 0.00 0.00 30.42 5.73
5414 7205 1.038280 GACGTATCTCCATCCCCGTT 58.962 55.000 0.00 0.00 0.00 4.44
5427 7218 3.974871 TCCCCGTTTCGAAAAAGAAAG 57.025 42.857 13.10 0.09 40.34 2.62
5434 7225 6.237728 CCCGTTTCGAAAAAGAAAGGAAAAAG 60.238 38.462 13.10 0.00 44.22 2.27
5438 7229 9.309516 GTTTCGAAAAAGAAAGGAAAAAGGTAT 57.690 29.630 13.10 0.00 40.34 2.73
5450 7241 4.035675 GGAAAAAGGTATCTCCAGCAATCG 59.964 45.833 0.00 0.00 39.02 3.34
5452 7243 5.353394 AAAAGGTATCTCCAGCAATCGTA 57.647 39.130 0.00 0.00 39.02 3.43
5453 7244 5.552870 AAAGGTATCTCCAGCAATCGTAT 57.447 39.130 0.00 0.00 39.02 3.06
5454 7245 4.527509 AGGTATCTCCAGCAATCGTATG 57.472 45.455 0.00 0.00 39.02 2.39
5455 7246 3.259374 AGGTATCTCCAGCAATCGTATGG 59.741 47.826 0.00 0.00 39.02 2.74
5456 7247 3.258372 GGTATCTCCAGCAATCGTATGGA 59.742 47.826 0.00 0.00 40.80 3.41
5457 7248 2.890808 TCTCCAGCAATCGTATGGAC 57.109 50.000 0.00 0.00 38.19 4.02
5474 7265 3.855589 CGTGCGCGCGGGATAAAA 61.856 61.111 34.14 2.27 0.00 1.52
5476 7267 1.823260 CGTGCGCGCGGGATAAAATA 61.823 55.000 34.14 0.47 0.00 1.40
5477 7268 0.110823 GTGCGCGCGGGATAAAATAG 60.111 55.000 33.06 0.00 0.00 1.73
5478 7269 1.225376 TGCGCGCGGGATAAAATAGG 61.225 55.000 33.06 0.00 0.00 2.57
5479 7270 1.908066 GCGCGCGGGATAAAATAGGG 61.908 60.000 33.06 0.00 0.00 3.53
5480 7271 1.873863 GCGCGGGATAAAATAGGGC 59.126 57.895 8.83 0.00 0.00 5.19
5481 7272 1.583495 GCGCGGGATAAAATAGGGCC 61.583 60.000 8.83 0.00 35.20 5.80
5482 7273 0.036306 CGCGGGATAAAATAGGGCCT 59.964 55.000 12.58 12.58 0.00 5.19
5483 7274 1.534729 GCGGGATAAAATAGGGCCTG 58.465 55.000 18.53 0.00 0.00 4.85
5484 7275 1.073284 GCGGGATAAAATAGGGCCTGA 59.927 52.381 18.53 0.04 0.00 3.86
5485 7276 2.876079 GCGGGATAAAATAGGGCCTGAG 60.876 54.545 18.53 0.00 0.00 3.35
5486 7277 2.372172 CGGGATAAAATAGGGCCTGAGT 59.628 50.000 18.53 0.00 0.00 3.41
5487 7278 3.581332 CGGGATAAAATAGGGCCTGAGTA 59.419 47.826 18.53 3.32 0.00 2.59
5488 7279 4.041198 CGGGATAAAATAGGGCCTGAGTAA 59.959 45.833 18.53 0.00 0.00 2.24
5489 7280 5.455612 CGGGATAAAATAGGGCCTGAGTAAA 60.456 44.000 18.53 0.00 0.00 2.01
5490 7281 6.004574 GGGATAAAATAGGGCCTGAGTAAAG 58.995 44.000 18.53 0.00 0.00 1.85
5491 7282 5.473846 GGATAAAATAGGGCCTGAGTAAAGC 59.526 44.000 18.53 0.00 0.00 3.51
5492 7283 4.316025 AAAATAGGGCCTGAGTAAAGCA 57.684 40.909 18.53 0.00 0.00 3.91
5493 7284 4.316025 AAATAGGGCCTGAGTAAAGCAA 57.684 40.909 18.53 0.00 0.00 3.91
5494 7285 4.316025 AATAGGGCCTGAGTAAAGCAAA 57.684 40.909 18.53 0.00 0.00 3.68
5495 7286 2.907458 AGGGCCTGAGTAAAGCAAAT 57.093 45.000 4.50 0.00 0.00 2.32
5496 7287 3.175438 AGGGCCTGAGTAAAGCAAATT 57.825 42.857 4.50 0.00 0.00 1.82
5497 7288 4.316025 AGGGCCTGAGTAAAGCAAATTA 57.684 40.909 4.50 0.00 0.00 1.40
5498 7289 4.017126 AGGGCCTGAGTAAAGCAAATTAC 58.983 43.478 4.50 0.00 36.28 1.89
5499 7290 3.181500 GGGCCTGAGTAAAGCAAATTACG 60.181 47.826 0.84 0.00 40.05 3.18
5500 7291 3.439129 GGCCTGAGTAAAGCAAATTACGT 59.561 43.478 0.00 0.00 40.05 3.57
5501 7292 4.403453 GCCTGAGTAAAGCAAATTACGTG 58.597 43.478 0.00 0.00 40.05 4.49
5518 7309 3.384668 ACGTGAACTGACACAAGAGATG 58.615 45.455 0.00 0.00 40.34 2.90
5522 7313 4.811024 GTGAACTGACACAAGAGATGAACA 59.189 41.667 0.00 0.00 40.11 3.18
5544 7338 4.693095 CAGACTAAGAAGCCAAGTCTTTCC 59.307 45.833 1.59 0.00 45.94 3.13
5546 7340 1.897560 AAGAAGCCAAGTCTTTCCCG 58.102 50.000 0.00 0.00 31.10 5.14
5551 7345 0.591659 GCCAAGTCTTTCCCGTTGAC 59.408 55.000 0.00 0.00 0.00 3.18
5557 7351 2.900546 AGTCTTTCCCGTTGACTGATCT 59.099 45.455 0.00 0.00 39.29 2.75
5558 7352 4.087182 AGTCTTTCCCGTTGACTGATCTA 58.913 43.478 0.00 0.00 39.29 1.98
5559 7353 4.712337 AGTCTTTCCCGTTGACTGATCTAT 59.288 41.667 0.00 0.00 39.29 1.98
5560 7354 5.044558 GTCTTTCCCGTTGACTGATCTATC 58.955 45.833 0.00 0.00 0.00 2.08
5561 7355 4.709886 TCTTTCCCGTTGACTGATCTATCA 59.290 41.667 0.00 0.00 35.16 2.15
5562 7356 5.363868 TCTTTCCCGTTGACTGATCTATCAT 59.636 40.000 0.00 0.00 36.02 2.45
5563 7357 4.855715 TCCCGTTGACTGATCTATCATC 57.144 45.455 0.00 0.00 36.02 2.92
5564 7358 3.253432 TCCCGTTGACTGATCTATCATCG 59.747 47.826 16.75 16.75 37.64 3.84
5604 7399 4.098770 GGCACATGCTCAACTTCAAGTTG 61.099 47.826 22.39 22.39 45.86 3.16
5675 7470 2.501723 AGGACCGCAAGTTGATCAGTAT 59.498 45.455 7.16 0.00 0.00 2.12
5676 7471 2.609459 GGACCGCAAGTTGATCAGTATG 59.391 50.000 7.16 0.00 37.54 2.39
5793 8271 3.181485 ACAGACGTAATCCTAAGAGCAGC 60.181 47.826 0.00 0.00 0.00 5.25
5796 8274 4.045783 GACGTAATCCTAAGAGCAGCTTC 58.954 47.826 0.00 0.00 38.05 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.769835 AGGGCCTAGATCATTTTGATTTGA 58.230 37.500 2.82 0.00 37.20 2.69
1 2 6.475596 AAGGGCCTAGATCATTTTGATTTG 57.524 37.500 6.41 0.00 37.20 2.32
2 3 7.180766 TGAAAAGGGCCTAGATCATTTTGATTT 59.819 33.333 6.41 0.00 37.20 2.17
3 4 6.669154 TGAAAAGGGCCTAGATCATTTTGATT 59.331 34.615 6.41 0.00 37.20 2.57
4 5 6.197168 TGAAAAGGGCCTAGATCATTTTGAT 58.803 36.000 6.41 0.00 40.34 2.57
5 6 5.579047 TGAAAAGGGCCTAGATCATTTTGA 58.421 37.500 6.41 0.00 0.00 2.69
6 7 5.920193 TGAAAAGGGCCTAGATCATTTTG 57.080 39.130 6.41 0.00 0.00 2.44
7 8 7.619302 TGTATTGAAAAGGGCCTAGATCATTTT 59.381 33.333 6.41 0.67 0.00 1.82
8 9 7.125391 TGTATTGAAAAGGGCCTAGATCATTT 58.875 34.615 6.41 1.56 0.00 2.32
9 10 6.672593 TGTATTGAAAAGGGCCTAGATCATT 58.327 36.000 6.41 10.58 0.00 2.57
10 11 6.126361 ACTGTATTGAAAAGGGCCTAGATCAT 60.126 38.462 6.41 0.00 0.00 2.45
11 12 5.191722 ACTGTATTGAAAAGGGCCTAGATCA 59.808 40.000 6.41 9.22 0.00 2.92
12 13 5.685728 ACTGTATTGAAAAGGGCCTAGATC 58.314 41.667 6.41 6.32 0.00 2.75
13 14 5.717119 ACTGTATTGAAAAGGGCCTAGAT 57.283 39.130 6.41 0.00 0.00 1.98
14 15 6.824958 ATACTGTATTGAAAAGGGCCTAGA 57.175 37.500 6.41 0.00 0.00 2.43
15 16 9.574516 AATTATACTGTATTGAAAAGGGCCTAG 57.425 33.333 6.41 0.00 0.00 3.02
16 17 9.349713 CAATTATACTGTATTGAAAAGGGCCTA 57.650 33.333 6.41 0.00 34.44 3.93
17 18 8.058847 TCAATTATACTGTATTGAAAAGGGCCT 58.941 33.333 0.00 0.00 37.71 5.19
18 19 8.232913 TCAATTATACTGTATTGAAAAGGGCC 57.767 34.615 5.52 0.00 37.71 5.80
19 20 9.516314 GTTCAATTATACTGTATTGAAAAGGGC 57.484 33.333 15.18 3.81 46.46 5.19
26 27 9.836864 AGAGCATGTTCAATTATACTGTATTGA 57.163 29.630 12.41 3.15 38.59 2.57
28 29 9.836864 TGAGAGCATGTTCAATTATACTGTATT 57.163 29.630 12.41 0.00 0.00 1.89
31 32 9.265901 GTATGAGAGCATGTTCAATTATACTGT 57.734 33.333 12.41 0.00 35.94 3.55
32 33 9.264719 TGTATGAGAGCATGTTCAATTATACTG 57.735 33.333 12.41 0.00 35.94 2.74
33 34 9.265901 GTGTATGAGAGCATGTTCAATTATACT 57.734 33.333 12.41 0.00 35.94 2.12
34 35 8.217115 CGTGTATGAGAGCATGTTCAATTATAC 58.783 37.037 12.41 13.05 35.94 1.47
35 36 7.095649 GCGTGTATGAGAGCATGTTCAATTATA 60.096 37.037 12.41 2.43 35.94 0.98
36 37 6.293081 GCGTGTATGAGAGCATGTTCAATTAT 60.293 38.462 12.41 3.30 35.94 1.28
37 38 5.006649 GCGTGTATGAGAGCATGTTCAATTA 59.993 40.000 12.41 0.00 35.94 1.40
38 39 4.201851 GCGTGTATGAGAGCATGTTCAATT 60.202 41.667 12.41 0.00 35.94 2.32
39 40 3.310774 GCGTGTATGAGAGCATGTTCAAT 59.689 43.478 12.41 7.53 35.94 2.57
40 41 2.672874 GCGTGTATGAGAGCATGTTCAA 59.327 45.455 12.41 0.00 35.94 2.69
41 42 2.094026 AGCGTGTATGAGAGCATGTTCA 60.094 45.455 12.41 5.81 35.94 3.18
42 43 2.544685 AGCGTGTATGAGAGCATGTTC 58.455 47.619 0.50 0.50 35.94 3.18
43 44 2.680312 AGCGTGTATGAGAGCATGTT 57.320 45.000 0.00 0.00 35.94 2.71
44 45 2.680312 AAGCGTGTATGAGAGCATGT 57.320 45.000 0.00 0.00 35.94 3.21
45 46 3.055591 CCTAAGCGTGTATGAGAGCATG 58.944 50.000 0.00 0.00 35.94 4.06
46 47 2.695666 ACCTAAGCGTGTATGAGAGCAT 59.304 45.455 0.00 0.00 38.54 3.79
47 48 2.100197 ACCTAAGCGTGTATGAGAGCA 58.900 47.619 0.00 0.00 0.00 4.26
48 49 2.873133 ACCTAAGCGTGTATGAGAGC 57.127 50.000 0.00 0.00 0.00 4.09
49 50 7.591006 TTAAAAACCTAAGCGTGTATGAGAG 57.409 36.000 0.00 0.00 0.00 3.20
50 51 9.090692 GTATTAAAAACCTAAGCGTGTATGAGA 57.909 33.333 0.00 0.00 0.00 3.27
51 52 8.875803 TGTATTAAAAACCTAAGCGTGTATGAG 58.124 33.333 0.00 0.00 0.00 2.90
52 53 8.774890 TGTATTAAAAACCTAAGCGTGTATGA 57.225 30.769 0.00 0.00 0.00 2.15
53 54 8.662141 ACTGTATTAAAAACCTAAGCGTGTATG 58.338 33.333 0.00 0.00 0.00 2.39
54 55 8.782339 ACTGTATTAAAAACCTAAGCGTGTAT 57.218 30.769 0.00 0.00 0.00 2.29
55 56 9.874205 ATACTGTATTAAAAACCTAAGCGTGTA 57.126 29.630 0.00 0.00 0.00 2.90
56 57 8.782339 ATACTGTATTAAAAACCTAAGCGTGT 57.218 30.769 0.00 0.00 0.00 4.49
72 73 8.937207 AACGGAGGAGTAAGATATACTGTATT 57.063 34.615 5.52 0.00 0.00 1.89
73 74 7.611079 GGAACGGAGGAGTAAGATATACTGTAT 59.389 40.741 5.53 5.53 0.00 2.29
74 75 6.939163 GGAACGGAGGAGTAAGATATACTGTA 59.061 42.308 0.00 0.00 0.00 2.74
75 76 5.769162 GGAACGGAGGAGTAAGATATACTGT 59.231 44.000 0.00 0.00 0.00 3.55
76 77 6.256912 GGAACGGAGGAGTAAGATATACTG 57.743 45.833 0.00 0.00 0.00 2.74
95 96 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
96 97 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
97 98 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
98 99 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
99 100 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
100 101 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
101 102 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
102 103 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
103 104 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
104 105 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
105 106 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
106 107 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
107 108 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
108 109 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
109 110 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
110 111 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
111 112 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
112 113 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
138 139 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
139 140 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
140 141 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
141 142 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
142 143 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
143 144 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
144 145 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
145 146 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
146 147 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
147 148 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
148 149 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
149 150 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
150 151 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
151 152 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
152 153 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
153 154 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
154 155 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
155 156 4.092821 TCAAATTACTCGTCGCAGAAATGG 59.907 41.667 0.00 0.00 39.69 3.16
156 157 5.203358 TCAAATTACTCGTCGCAGAAATG 57.797 39.130 0.00 0.00 39.69 2.32
157 158 5.856126 TTCAAATTACTCGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
158 159 5.660629 TTTCAAATTACTCGTCGCAGAAA 57.339 34.783 0.00 0.00 39.69 2.52
159 160 5.390461 CCATTTCAAATTACTCGTCGCAGAA 60.390 40.000 0.00 0.00 39.69 3.02
160 161 4.092821 CCATTTCAAATTACTCGTCGCAGA 59.907 41.667 0.00 0.00 0.00 4.26
161 162 4.092821 TCCATTTCAAATTACTCGTCGCAG 59.907 41.667 0.00 0.00 0.00 5.18
162 163 3.997681 TCCATTTCAAATTACTCGTCGCA 59.002 39.130 0.00 0.00 0.00 5.10
163 164 4.593597 TCCATTTCAAATTACTCGTCGC 57.406 40.909 0.00 0.00 0.00 5.19
164 165 6.344572 TCATCCATTTCAAATTACTCGTCG 57.655 37.500 0.00 0.00 0.00 5.12
165 166 7.752695 ACTTCATCCATTTCAAATTACTCGTC 58.247 34.615 0.00 0.00 0.00 4.20
166 167 7.687941 ACTTCATCCATTTCAAATTACTCGT 57.312 32.000 0.00 0.00 0.00 4.18
175 176 9.270640 CCAAAACAAATACTTCATCCATTTCAA 57.729 29.630 0.00 0.00 0.00 2.69
176 177 7.877097 CCCAAAACAAATACTTCATCCATTTCA 59.123 33.333 0.00 0.00 0.00 2.69
177 178 7.877612 ACCCAAAACAAATACTTCATCCATTTC 59.122 33.333 0.00 0.00 0.00 2.17
178 179 7.744733 ACCCAAAACAAATACTTCATCCATTT 58.255 30.769 0.00 0.00 0.00 2.32
179 180 7.315066 ACCCAAAACAAATACTTCATCCATT 57.685 32.000 0.00 0.00 0.00 3.16
180 181 6.933514 ACCCAAAACAAATACTTCATCCAT 57.066 33.333 0.00 0.00 0.00 3.41
181 182 6.739331 AACCCAAAACAAATACTTCATCCA 57.261 33.333 0.00 0.00 0.00 3.41
182 183 8.364894 AGTTAACCCAAAACAAATACTTCATCC 58.635 33.333 0.88 0.00 0.00 3.51
191 192 8.616942 GCACATTTTAGTTAACCCAAAACAAAT 58.383 29.630 14.56 3.08 0.00 2.32
192 193 7.606456 TGCACATTTTAGTTAACCCAAAACAAA 59.394 29.630 14.56 1.26 0.00 2.83
193 194 7.103641 TGCACATTTTAGTTAACCCAAAACAA 58.896 30.769 14.56 0.00 0.00 2.83
194 195 6.640518 TGCACATTTTAGTTAACCCAAAACA 58.359 32.000 14.56 8.13 0.00 2.83
195 196 7.095397 GGATGCACATTTTAGTTAACCCAAAAC 60.095 37.037 14.56 6.30 0.00 2.43
196 197 6.931840 GGATGCACATTTTAGTTAACCCAAAA 59.068 34.615 14.59 14.59 0.00 2.44
197 198 6.042093 TGGATGCACATTTTAGTTAACCCAAA 59.958 34.615 0.88 2.18 0.00 3.28
198 199 5.540337 TGGATGCACATTTTAGTTAACCCAA 59.460 36.000 0.88 0.00 0.00 4.12
199 200 5.080337 TGGATGCACATTTTAGTTAACCCA 58.920 37.500 0.88 0.00 0.00 4.51
200 201 5.652994 TGGATGCACATTTTAGTTAACCC 57.347 39.130 0.88 0.00 0.00 4.11
211 212 5.244755 GGTTAACCAAAATGGATGCACATT 58.755 37.500 20.12 0.00 40.96 2.71
212 213 4.323409 GGGTTAACCAAAATGGATGCACAT 60.323 41.667 25.71 0.00 40.96 3.21
213 214 3.007398 GGGTTAACCAAAATGGATGCACA 59.993 43.478 25.71 0.00 40.96 4.57
214 215 3.595173 GGGTTAACCAAAATGGATGCAC 58.405 45.455 25.71 0.05 40.96 4.57
215 216 3.971245 GGGTTAACCAAAATGGATGCA 57.029 42.857 25.71 0.00 40.96 3.96
229 230 5.939296 ACGGATCTTATTCGTTTTGGGTTAA 59.061 36.000 0.00 0.00 32.95 2.01
262 263 1.629345 GCGCACGTACCAGGTTTACC 61.629 60.000 0.30 0.00 0.00 2.85
298 299 0.948678 TAACTGTGCAAAAGCGACCC 59.051 50.000 0.00 0.00 0.00 4.46
327 328 4.198530 TCTCGCATGCAATTAGGATCAAA 58.801 39.130 19.57 0.00 0.00 2.69
392 393 0.392998 AGGCGAAATCCTGATGCGTT 60.393 50.000 0.00 0.00 34.56 4.84
393 394 0.464036 TAGGCGAAATCCTGATGCGT 59.536 50.000 0.00 0.00 37.01 5.24
487 491 1.019805 GCTTGCTGACGGGAGGTTAC 61.020 60.000 0.00 0.00 0.00 2.50
488 492 1.295423 GCTTGCTGACGGGAGGTTA 59.705 57.895 0.00 0.00 0.00 2.85
489 493 2.032681 GCTTGCTGACGGGAGGTT 59.967 61.111 0.00 0.00 0.00 3.50
504 509 2.437359 GATGCTCAACTGCCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
505 510 2.747460 TGATGCTCAACTGCCCGC 60.747 61.111 0.00 0.00 0.00 6.13
730 747 3.093835 TGGGTTATGCGGAGGGGG 61.094 66.667 0.00 0.00 0.00 5.40
750 767 1.797933 CGAAGACGGAGCGAGTGTG 60.798 63.158 0.00 0.00 35.72 3.82
751 768 2.185103 GACGAAGACGGAGCGAGTGT 62.185 60.000 0.00 0.00 44.46 3.55
752 769 1.512310 GACGAAGACGGAGCGAGTG 60.512 63.158 0.00 0.00 44.46 3.51
753 770 1.235948 AAGACGAAGACGGAGCGAGT 61.236 55.000 0.00 0.00 44.46 4.18
877 894 2.424246 CGGTGGAGAGAGAGAGGTAAAC 59.576 54.545 0.00 0.00 0.00 2.01
881 898 1.379309 GCGGTGGAGAGAGAGAGGT 60.379 63.158 0.00 0.00 0.00 3.85
976 1027 0.776451 CGACTGTGTTGTCACTACGC 59.224 55.000 0.00 0.00 44.14 4.42
987 1045 1.118965 TCCCCATGTCACGACTGTGT 61.119 55.000 0.00 0.00 46.49 3.72
989 1047 1.671742 GTCCCCATGTCACGACTGT 59.328 57.895 0.00 0.00 0.00 3.55
990 1048 1.446099 CGTCCCCATGTCACGACTG 60.446 63.158 2.95 0.00 35.49 3.51
991 1049 2.646175 CCGTCCCCATGTCACGACT 61.646 63.158 9.27 0.00 35.49 4.18
992 1050 2.125673 CCGTCCCCATGTCACGAC 60.126 66.667 9.27 0.00 35.49 4.34
993 1051 4.077184 GCCGTCCCCATGTCACGA 62.077 66.667 9.27 0.00 35.49 4.35
1225 1283 3.057734 GGTCGAACTTGAACTTGTCGAT 58.942 45.455 0.00 0.00 0.00 3.59
1425 1502 4.100498 ACCCATCCGTCGAGTACAAATTAT 59.900 41.667 0.00 0.00 0.00 1.28
1427 1504 2.235402 ACCCATCCGTCGAGTACAAATT 59.765 45.455 0.00 0.00 0.00 1.82
1428 1505 1.829222 ACCCATCCGTCGAGTACAAAT 59.171 47.619 0.00 0.00 0.00 2.32
1429 1506 1.067425 CACCCATCCGTCGAGTACAAA 60.067 52.381 0.00 0.00 0.00 2.83
1431 1508 0.609957 ACACCCATCCGTCGAGTACA 60.610 55.000 0.00 0.00 0.00 2.90
1432 1509 0.179145 CACACCCATCCGTCGAGTAC 60.179 60.000 0.00 0.00 0.00 2.73
1434 1511 1.469335 AACACACCCATCCGTCGAGT 61.469 55.000 0.00 0.00 0.00 4.18
1435 1512 0.736325 GAACACACCCATCCGTCGAG 60.736 60.000 0.00 0.00 0.00 4.04
1436 1513 1.290955 GAACACACCCATCCGTCGA 59.709 57.895 0.00 0.00 0.00 4.20
1437 1514 1.740296 GGAACACACCCATCCGTCG 60.740 63.158 0.00 0.00 0.00 5.12
1438 1515 0.673644 CTGGAACACACCCATCCGTC 60.674 60.000 0.00 0.00 35.96 4.79
1439 1516 1.125093 TCTGGAACACACCCATCCGT 61.125 55.000 0.00 0.00 35.96 4.69
1440 1517 0.253044 ATCTGGAACACACCCATCCG 59.747 55.000 0.00 0.00 35.96 4.18
1441 1518 2.369394 GAATCTGGAACACACCCATCC 58.631 52.381 0.00 0.00 32.49 3.51
1442 1519 2.009774 CGAATCTGGAACACACCCATC 58.990 52.381 0.00 0.00 32.49 3.51
1443 1520 1.628340 TCGAATCTGGAACACACCCAT 59.372 47.619 0.00 0.00 32.49 4.00
1444 1521 1.001974 CTCGAATCTGGAACACACCCA 59.998 52.381 0.00 0.00 0.00 4.51
1445 1522 1.726853 CTCGAATCTGGAACACACCC 58.273 55.000 0.00 0.00 0.00 4.61
1449 1526 1.656095 CGAAGCTCGAATCTGGAACAC 59.344 52.381 0.00 0.00 43.74 3.32
1451 1528 1.656095 CACGAAGCTCGAATCTGGAAC 59.344 52.381 11.64 0.00 43.74 3.62
1679 1760 2.279741 GACTGATGATTTGGTAGCGCA 58.720 47.619 11.47 0.00 0.00 6.09
1683 1764 5.118990 ACGGAATGACTGATGATTTGGTAG 58.881 41.667 0.00 0.00 0.00 3.18
1709 1808 8.521860 CAGTTAGTTAAAGACGATCGTCATAAC 58.478 37.037 37.68 37.68 46.76 1.89
1710 1809 8.453320 TCAGTTAGTTAAAGACGATCGTCATAA 58.547 33.333 40.51 33.58 46.76 1.90
1711 1810 7.907045 GTCAGTTAGTTAAAGACGATCGTCATA 59.093 37.037 40.51 30.88 46.76 2.15
1723 1822 6.750148 ACTCTCCACAGTCAGTTAGTTAAAG 58.250 40.000 0.00 0.00 0.00 1.85
1749 1851 2.092212 CAGCCCTAATCTTCACCACCAT 60.092 50.000 0.00 0.00 0.00 3.55
1750 1852 1.281867 CAGCCCTAATCTTCACCACCA 59.718 52.381 0.00 0.00 0.00 4.17
1937 2039 3.055167 TGATGAGCGAATTGAAAGGGAGA 60.055 43.478 0.00 0.00 0.00 3.71
1941 2043 3.004106 GGGATGATGAGCGAATTGAAAGG 59.996 47.826 0.00 0.00 0.00 3.11
1965 2067 3.307829 CAGTGGTGCTACGTCTACG 57.692 57.895 0.00 0.04 46.33 3.51
2021 2136 1.446272 GGCGAAGAACCAGTCCTCG 60.446 63.158 0.00 0.00 42.15 4.63
2026 2141 1.122019 AGGAGTGGCGAAGAACCAGT 61.122 55.000 0.00 0.00 43.70 4.00
2027 2142 0.390472 GAGGAGTGGCGAAGAACCAG 60.390 60.000 0.00 0.00 38.04 4.00
2028 2143 0.832135 AGAGGAGTGGCGAAGAACCA 60.832 55.000 0.00 0.00 33.84 3.67
2029 2144 1.183549 TAGAGGAGTGGCGAAGAACC 58.816 55.000 0.00 0.00 0.00 3.62
2030 2145 3.528597 AATAGAGGAGTGGCGAAGAAC 57.471 47.619 0.00 0.00 0.00 3.01
2031 2146 4.504858 GAAAATAGAGGAGTGGCGAAGAA 58.495 43.478 0.00 0.00 0.00 2.52
2032 2147 3.118738 GGAAAATAGAGGAGTGGCGAAGA 60.119 47.826 0.00 0.00 0.00 2.87
2143 2258 1.202545 CGCCTTTCTAGTTCCTAGGGC 60.203 57.143 9.46 2.33 36.36 5.19
2230 2346 8.329203 AGAAGTTCCTTTTTCTTGCTATACAG 57.671 34.615 0.00 0.00 29.64 2.74
2247 2363 4.779993 ATTCCTACATGGGAGAAGTTCC 57.220 45.455 0.00 0.00 46.00 3.62
2323 2511 2.092968 AGTATATGGGTGTGTGTGCAGG 60.093 50.000 0.00 0.00 0.00 4.85
2348 2547 9.457110 TTCGTACGTTACTTACACTTGAATAAA 57.543 29.630 16.05 0.00 0.00 1.40
2350 2549 8.073167 TGTTCGTACGTTACTTACACTTGAATA 58.927 33.333 16.05 0.00 0.00 1.75
2351 2550 6.917477 TGTTCGTACGTTACTTACACTTGAAT 59.083 34.615 16.05 0.00 0.00 2.57
2354 2553 5.116074 CCTGTTCGTACGTTACTTACACTTG 59.884 44.000 16.05 1.19 0.00 3.16
2355 2554 5.215160 CCTGTTCGTACGTTACTTACACTT 58.785 41.667 16.05 0.00 0.00 3.16
2356 2555 4.787598 CCTGTTCGTACGTTACTTACACT 58.212 43.478 16.05 0.00 0.00 3.55
2357 2556 3.361940 GCCTGTTCGTACGTTACTTACAC 59.638 47.826 16.05 1.67 0.00 2.90
2359 2558 3.564511 TGCCTGTTCGTACGTTACTTAC 58.435 45.455 16.05 8.53 0.00 2.34
2368 2849 5.038033 TCAAATTTGTTTGCCTGTTCGTAC 58.962 37.500 17.47 0.00 32.23 3.67
2489 2972 2.414293 GCTACACGTCGACTTCTCATGT 60.414 50.000 14.70 10.14 0.00 3.21
2535 3018 3.005554 AGTTGCCATCAGAGATCGTTTG 58.994 45.455 0.00 0.00 0.00 2.93
2821 3304 5.140747 ACTGCTTTTGACTAGATTCGAGT 57.859 39.130 0.00 0.00 0.00 4.18
2885 3391 6.096705 TCTGAATTTTTGCAAGTCAGAAGGAA 59.903 34.615 21.88 7.98 41.22 3.36
2886 3392 5.593909 TCTGAATTTTTGCAAGTCAGAAGGA 59.406 36.000 21.88 8.40 41.22 3.36
2904 3410 8.454570 AAATGTGGCATTTTCTTTTTCTGAAT 57.545 26.923 0.00 0.00 0.00 2.57
2928 3434 0.916086 ATGGCCGACACCCAGAATAA 59.084 50.000 0.00 0.00 35.48 1.40
3054 3560 6.676456 GCTTTCAGGTCTTAACAGCACATATG 60.676 42.308 0.00 0.00 0.00 1.78
3056 3562 4.695455 GCTTTCAGGTCTTAACAGCACATA 59.305 41.667 0.00 0.00 0.00 2.29
3059 3565 2.226674 GGCTTTCAGGTCTTAACAGCAC 59.773 50.000 0.00 0.00 0.00 4.40
3076 3582 6.127786 GCAGAAACTGAAATAGATCTTGGCTT 60.128 38.462 0.00 0.00 32.44 4.35
3112 3619 1.603802 CAGCGAACAAAGACATGGTGT 59.396 47.619 0.00 0.00 0.00 4.16
3133 3640 1.034838 GGTCACCAACCTGTTGCACA 61.035 55.000 4.48 0.00 45.45 4.57
3166 3673 5.715439 ACTGTGAAATGGAGATGGGATTA 57.285 39.130 0.00 0.00 0.00 1.75
3253 3760 0.392060 TGGCTAGACGTACTGCGAGA 60.392 55.000 0.00 0.00 44.77 4.04
3284 3791 1.449601 GGCTCGGCGGAAAGATTGA 60.450 57.895 7.21 0.00 0.00 2.57
3298 3805 2.033662 GTCGATGATAAACGCTTGGCTC 60.034 50.000 0.00 0.00 0.00 4.70
3299 3806 1.933853 GTCGATGATAAACGCTTGGCT 59.066 47.619 0.00 0.00 0.00 4.75
3331 3838 9.040939 CCTGAAAATGATCAACGTGTATATACA 57.959 33.333 11.62 11.62 0.00 2.29
3339 3846 4.455533 TCCTTCCTGAAAATGATCAACGTG 59.544 41.667 0.00 0.00 0.00 4.49
3380 3887 2.789213 TCGTTCTTGATCATGGCCAAA 58.211 42.857 10.96 0.17 0.00 3.28
3496 4170 2.359214 GCTGGCAGGTTTAATCCTAAGC 59.641 50.000 17.64 10.43 35.87 3.09
3549 4223 1.674221 GGCAAGACATGTCGCTCTCTT 60.674 52.381 19.85 5.12 34.09 2.85
3568 4242 4.190001 CCAAGAGTCACAGATTCATCAGG 58.810 47.826 0.00 0.00 0.00 3.86
3646 4320 3.411351 CACCCGGCGTCGAAGTTG 61.411 66.667 12.93 0.00 39.00 3.16
3763 4437 1.592669 GGCGACCACGATGATGGAG 60.593 63.158 0.00 0.00 43.02 3.86
3916 4590 2.619074 GGGTAGAAAGCAGCATGAGGTT 60.619 50.000 0.00 0.00 39.69 3.50
3918 4592 1.211457 AGGGTAGAAAGCAGCATGAGG 59.789 52.381 0.00 0.00 39.69 3.86
3964 4638 4.602259 ACGGTCACCACGGCACTG 62.602 66.667 0.00 0.00 35.23 3.66
3980 4654 1.127951 CGACGTTATGCTGGGAAACAC 59.872 52.381 0.00 0.00 0.00 3.32
3989 4663 3.349488 TCAATCGATCGACGTTATGCT 57.651 42.857 22.06 0.00 43.13 3.79
3993 4667 5.173131 CACATCAATCAATCGATCGACGTTA 59.827 40.000 22.06 6.85 43.13 3.18
4005 4679 3.491356 CGACGTTTGCACATCAATCAAT 58.509 40.909 0.00 0.00 34.12 2.57
4006 4680 2.914861 CGACGTTTGCACATCAATCAA 58.085 42.857 0.00 0.00 34.12 2.57
4007 4681 1.399599 GCGACGTTTGCACATCAATCA 60.400 47.619 8.64 0.00 34.12 2.57
4008 4682 1.250476 GCGACGTTTGCACATCAATC 58.750 50.000 8.64 0.00 34.12 2.67
4125 4800 3.040409 CGGGTACTGCTTTACGTCC 57.960 57.895 0.00 0.00 0.00 4.79
4243 4918 5.007385 TCATAAACCTAAGAGAAGGCGTC 57.993 43.478 0.00 0.00 40.62 5.19
4251 4926 7.030165 ACGCGATATGATCATAAACCTAAGAG 58.970 38.462 19.03 9.52 0.00 2.85
4253 4928 8.683550 TTACGCGATATGATCATAAACCTAAG 57.316 34.615 19.03 9.57 0.00 2.18
4254 4929 9.647797 AATTACGCGATATGATCATAAACCTAA 57.352 29.630 19.03 11.10 0.00 2.69
4273 4948 6.943981 TGCAAGTATAACATCTCAATTACGC 58.056 36.000 0.00 0.00 0.00 4.42
4295 4976 4.646492 ACCCATCTCAAAATCCTACATTGC 59.354 41.667 0.00 0.00 0.00 3.56
4297 4978 6.493166 TCAACCCATCTCAAAATCCTACATT 58.507 36.000 0.00 0.00 0.00 2.71
4419 5111 2.606272 CGACGCCCCAAGAAAATACTAC 59.394 50.000 0.00 0.00 0.00 2.73
4420 5112 2.496871 TCGACGCCCCAAGAAAATACTA 59.503 45.455 0.00 0.00 0.00 1.82
4421 5113 1.276989 TCGACGCCCCAAGAAAATACT 59.723 47.619 0.00 0.00 0.00 2.12
4422 5114 1.729284 TCGACGCCCCAAGAAAATAC 58.271 50.000 0.00 0.00 0.00 1.89
4432 5125 1.949465 AAGTTAATGATCGACGCCCC 58.051 50.000 0.00 0.00 0.00 5.80
4458 5151 1.164411 CGCCTGCCATGTTCAGTTAA 58.836 50.000 10.22 0.00 0.00 2.01
4674 5479 1.668294 CTTCTCCGTCACCTGCAGT 59.332 57.895 13.81 0.00 0.00 4.40
4826 5635 1.732259 CATCCACACTGTCTAAACGCC 59.268 52.381 0.00 0.00 0.00 5.68
4836 5645 4.512944 GCCACAATATCTACATCCACACTG 59.487 45.833 0.00 0.00 0.00 3.66
4859 5668 3.179869 TTCTTGCGCTTGTGCCACG 62.180 57.895 9.73 0.00 35.36 4.94
4906 6564 1.406065 ATCCAGAGTCCATCCAGGCG 61.406 60.000 0.00 0.00 37.29 5.52
4935 6593 4.054671 CCTGAATCCTTTCGAGATACAGC 58.945 47.826 0.00 0.00 34.39 4.40
4943 6601 1.204146 CCTCCCCTGAATCCTTTCGA 58.796 55.000 0.00 0.00 34.39 3.71
4955 6613 1.285962 CAATGACCATGAACCTCCCCT 59.714 52.381 0.00 0.00 0.00 4.79
4959 6617 3.947834 CCCTTACAATGACCATGAACCTC 59.052 47.826 0.00 0.00 0.00 3.85
5080 6738 8.708205 CGTAAACCCGATACGAGCAAATATGC 62.708 46.154 0.06 0.00 46.81 3.14
5083 6741 4.043750 CGTAAACCCGATACGAGCAAATA 58.956 43.478 0.06 0.00 46.81 1.40
5157 6815 6.344500 CATCACTTTGTAGCAGAGGAAGTAT 58.656 40.000 0.00 0.00 0.00 2.12
5183 6841 5.283457 ACTACTTAGATGCATGACTTCCC 57.717 43.478 2.46 0.00 0.00 3.97
5207 6865 7.915293 ATATAAGACATTTTTGACACCACGA 57.085 32.000 0.00 0.00 0.00 4.35
5208 6866 8.964420 AAATATAAGACATTTTTGACACCACG 57.036 30.769 0.00 0.00 0.00 4.94
5209 6867 9.061610 CGAAATATAAGACATTTTTGACACCAC 57.938 33.333 0.00 0.00 0.00 4.16
5210 6868 9.004717 TCGAAATATAAGACATTTTTGACACCA 57.995 29.630 0.00 0.00 0.00 4.17
5234 6976 2.621998 ACATGGTACTCCCTTCGTATCG 59.378 50.000 0.00 0.00 0.00 2.92
5254 6996 7.675637 GCAGTAAAACATGAACCCGTCTATTAC 60.676 40.741 0.00 0.00 0.00 1.89
5257 6999 4.634443 GCAGTAAAACATGAACCCGTCTAT 59.366 41.667 0.00 0.00 0.00 1.98
5262 7004 3.252215 TCTTGCAGTAAAACATGAACCCG 59.748 43.478 0.00 0.00 0.00 5.28
5352 7142 7.693951 CCAAATAAGCTGACGAGAAAATAACAG 59.306 37.037 0.00 0.00 0.00 3.16
5386 7177 1.816835 TGGAGATACGTCTGGACACAC 59.183 52.381 0.00 0.00 33.97 3.82
5395 7186 1.038280 AACGGGGATGGAGATACGTC 58.962 55.000 0.00 0.00 32.98 4.34
5407 7198 2.619646 CCTTTCTTTTTCGAAACGGGGA 59.380 45.455 10.79 3.86 0.00 4.81
5412 7203 7.591006 ACCTTTTTCCTTTCTTTTTCGAAAC 57.409 32.000 10.79 0.00 0.00 2.78
5414 7205 8.909923 AGATACCTTTTTCCTTTCTTTTTCGAA 58.090 29.630 0.00 0.00 0.00 3.71
5427 7218 4.035675 CGATTGCTGGAGATACCTTTTTCC 59.964 45.833 0.00 0.00 39.86 3.13
5434 7225 3.258372 TCCATACGATTGCTGGAGATACC 59.742 47.826 0.00 0.00 34.17 2.73
5438 7229 2.890808 GTCCATACGATTGCTGGAGA 57.109 50.000 5.30 0.00 39.66 3.71
5457 7248 1.823260 TATTTTATCCCGCGCGCACG 61.823 55.000 32.61 20.02 44.07 5.34
5458 7249 0.110823 CTATTTTATCCCGCGCGCAC 60.111 55.000 32.61 2.05 0.00 5.34
5459 7250 1.225376 CCTATTTTATCCCGCGCGCA 61.225 55.000 32.61 13.93 0.00 6.09
5460 7251 1.495951 CCTATTTTATCCCGCGCGC 59.504 57.895 27.36 23.91 0.00 6.86
5462 7253 1.583495 GGCCCTATTTTATCCCGCGC 61.583 60.000 0.00 0.00 0.00 6.86
5463 7254 0.036306 AGGCCCTATTTTATCCCGCG 59.964 55.000 0.00 0.00 0.00 6.46
5465 7256 2.372172 ACTCAGGCCCTATTTTATCCCG 59.628 50.000 0.00 0.00 0.00 5.14
5467 7258 5.473846 GCTTTACTCAGGCCCTATTTTATCC 59.526 44.000 0.00 0.00 0.00 2.59
5468 7259 6.062095 TGCTTTACTCAGGCCCTATTTTATC 58.938 40.000 0.00 0.00 0.00 1.75
5470 7261 5.444744 TGCTTTACTCAGGCCCTATTTTA 57.555 39.130 0.00 0.00 0.00 1.52
5471 7262 4.316025 TGCTTTACTCAGGCCCTATTTT 57.684 40.909 0.00 0.00 0.00 1.82
5472 7263 4.316025 TTGCTTTACTCAGGCCCTATTT 57.684 40.909 0.00 0.00 0.00 1.40
5473 7264 4.316025 TTTGCTTTACTCAGGCCCTATT 57.684 40.909 0.00 0.00 0.00 1.73
5474 7265 4.526438 ATTTGCTTTACTCAGGCCCTAT 57.474 40.909 0.00 0.00 0.00 2.57
5476 7267 2.907458 ATTTGCTTTACTCAGGCCCT 57.093 45.000 0.00 0.00 0.00 5.19
5477 7268 3.181500 CGTAATTTGCTTTACTCAGGCCC 60.181 47.826 0.00 0.00 31.28 5.80
5478 7269 3.439129 ACGTAATTTGCTTTACTCAGGCC 59.561 43.478 0.00 0.00 31.28 5.19
5479 7270 4.153475 TCACGTAATTTGCTTTACTCAGGC 59.847 41.667 0.00 0.00 31.28 4.85
5480 7271 5.856126 TCACGTAATTTGCTTTACTCAGG 57.144 39.130 0.00 0.00 31.28 3.86
5481 7272 6.792250 CAGTTCACGTAATTTGCTTTACTCAG 59.208 38.462 0.00 0.00 31.28 3.35
5482 7273 6.480651 TCAGTTCACGTAATTTGCTTTACTCA 59.519 34.615 0.00 0.00 31.28 3.41
5483 7274 6.790825 GTCAGTTCACGTAATTTGCTTTACTC 59.209 38.462 0.00 0.00 31.28 2.59
5484 7275 6.259167 TGTCAGTTCACGTAATTTGCTTTACT 59.741 34.615 0.00 0.00 31.28 2.24
5485 7276 6.356190 GTGTCAGTTCACGTAATTTGCTTTAC 59.644 38.462 0.00 0.00 0.00 2.01
5486 7277 6.037281 TGTGTCAGTTCACGTAATTTGCTTTA 59.963 34.615 0.00 0.00 40.74 1.85
5487 7278 5.163703 TGTGTCAGTTCACGTAATTTGCTTT 60.164 36.000 0.00 0.00 40.74 3.51
5488 7279 4.334203 TGTGTCAGTTCACGTAATTTGCTT 59.666 37.500 0.00 0.00 40.74 3.91
5489 7280 3.874543 TGTGTCAGTTCACGTAATTTGCT 59.125 39.130 0.00 0.00 40.74 3.91
5490 7281 4.203950 TGTGTCAGTTCACGTAATTTGC 57.796 40.909 0.00 0.00 40.74 3.68
5491 7282 6.019075 TCTCTTGTGTCAGTTCACGTAATTTG 60.019 38.462 0.00 0.00 40.74 2.32
5492 7283 6.046593 TCTCTTGTGTCAGTTCACGTAATTT 58.953 36.000 0.00 0.00 40.74 1.82
5493 7284 5.597806 TCTCTTGTGTCAGTTCACGTAATT 58.402 37.500 0.00 0.00 40.74 1.40
5494 7285 5.196341 TCTCTTGTGTCAGTTCACGTAAT 57.804 39.130 0.00 0.00 40.74 1.89
5495 7286 4.642445 TCTCTTGTGTCAGTTCACGTAA 57.358 40.909 0.00 0.00 40.74 3.18
5496 7287 4.277423 TCATCTCTTGTGTCAGTTCACGTA 59.723 41.667 0.00 0.00 40.74 3.57
5497 7288 3.068165 TCATCTCTTGTGTCAGTTCACGT 59.932 43.478 0.00 0.00 40.74 4.49
5498 7289 3.642705 TCATCTCTTGTGTCAGTTCACG 58.357 45.455 0.00 0.00 40.74 4.35
5499 7290 4.811024 TGTTCATCTCTTGTGTCAGTTCAC 59.189 41.667 0.00 0.00 38.63 3.18
5500 7291 5.022282 TGTTCATCTCTTGTGTCAGTTCA 57.978 39.130 0.00 0.00 0.00 3.18
5501 7292 5.176590 GTCTGTTCATCTCTTGTGTCAGTTC 59.823 44.000 0.00 0.00 0.00 3.01
5518 7309 4.888917 AGACTTGGCTTCTTAGTCTGTTC 58.111 43.478 0.00 0.00 45.06 3.18
5544 7338 4.222886 GACGATGATAGATCAGTCAACGG 58.777 47.826 23.53 12.45 42.53 4.44
5557 7351 9.783256 CCTGTCGTTTTATATATGACGATGATA 57.217 33.333 18.27 9.15 44.90 2.15
5558 7352 7.275779 GCCTGTCGTTTTATATATGACGATGAT 59.724 37.037 18.27 0.00 44.90 2.45
5559 7353 6.584942 GCCTGTCGTTTTATATATGACGATGA 59.415 38.462 18.27 10.90 44.90 2.92
5560 7354 6.364976 TGCCTGTCGTTTTATATATGACGATG 59.635 38.462 18.27 14.87 44.90 3.84
5561 7355 6.365247 GTGCCTGTCGTTTTATATATGACGAT 59.635 38.462 18.27 0.00 44.90 3.73
5562 7356 5.688621 GTGCCTGTCGTTTTATATATGACGA 59.311 40.000 13.81 13.81 41.62 4.20
5563 7357 5.460748 TGTGCCTGTCGTTTTATATATGACG 59.539 40.000 10.50 10.50 34.90 4.35
5564 7358 6.838198 TGTGCCTGTCGTTTTATATATGAC 57.162 37.500 0.00 0.00 33.20 3.06
5604 7399 8.405418 TGCGGTCCTGGTTATATATATATCTC 57.595 38.462 8.55 4.04 0.00 2.75
5608 7403 7.093814 ACGTTTGCGGTCCTGGTTATATATATA 60.094 37.037 0.00 0.00 43.45 0.86
5611 7406 4.202284 ACGTTTGCGGTCCTGGTTATATAT 60.202 41.667 0.00 0.00 43.45 0.86
5612 7407 3.132646 ACGTTTGCGGTCCTGGTTATATA 59.867 43.478 0.00 0.00 43.45 0.86
5613 7408 2.093341 ACGTTTGCGGTCCTGGTTATAT 60.093 45.455 0.00 0.00 43.45 0.86
5675 7470 6.627087 ACTTCATCCTTCCTTCATAGTTCA 57.373 37.500 0.00 0.00 0.00 3.18
5676 7471 7.923878 GTCTACTTCATCCTTCCTTCATAGTTC 59.076 40.741 0.00 0.00 0.00 3.01
5679 7538 6.442952 CGTCTACTTCATCCTTCCTTCATAG 58.557 44.000 0.00 0.00 0.00 2.23
5721 8197 6.037786 TGATCTAAAACTGATCGTTCCTGT 57.962 37.500 0.00 0.00 42.18 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.