Multiple sequence alignment - TraesCS3D01G288000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G288000 chr3D 100.000 5825 0 0 1 5825 397140743 397134919 0.000000e+00 10757.0
1 TraesCS3D01G288000 chr3D 92.284 648 49 1 5179 5825 54687415 54686768 0.000000e+00 918.0
2 TraesCS3D01G288000 chr3D 89.691 97 8 2 299 395 397140359 397140265 7.930000e-24 122.0
3 TraesCS3D01G288000 chr3D 89.691 97 8 2 385 479 397140445 397140349 7.930000e-24 122.0
4 TraesCS3D01G288000 chr3B 91.649 3293 171 37 385 3612 522397457 522394204 0.000000e+00 4462.0
5 TraesCS3D01G288000 chr3B 95.174 891 37 4 4292 5178 522393633 522392745 0.000000e+00 1402.0
6 TraesCS3D01G288000 chr3B 92.976 541 24 5 3642 4180 522394205 522393677 0.000000e+00 776.0
7 TraesCS3D01G288000 chr3A 92.015 2342 143 24 385 2711 516556785 516554473 0.000000e+00 3249.0
8 TraesCS3D01G288000 chr3A 94.328 1481 57 12 2694 4166 516554457 516552996 0.000000e+00 2244.0
9 TraesCS3D01G288000 chr3A 93.018 888 47 11 4294 5179 516552938 516552064 0.000000e+00 1282.0
10 TraesCS3D01G288000 chr5A 92.668 641 45 2 5180 5819 482780212 482780851 0.000000e+00 922.0
11 TraesCS3D01G288000 chr5A 77.564 156 24 7 38 192 433028315 433028170 3.740000e-12 84.2
12 TraesCS3D01G288000 chr2A 92.056 642 48 2 5179 5817 682157336 682156695 0.000000e+00 900.0
13 TraesCS3D01G288000 chr2B 91.022 646 54 3 5178 5819 75617422 75618067 0.000000e+00 869.0
14 TraesCS3D01G288000 chr5D 92.040 603 26 3 5224 5825 492587124 492587705 0.000000e+00 828.0
15 TraesCS3D01G288000 chr5D 93.617 47 2 1 5179 5224 492571008 492571054 1.050000e-07 69.4
16 TraesCS3D01G288000 chr6B 89.130 644 66 3 5178 5817 716698430 716697787 0.000000e+00 798.0
17 TraesCS3D01G288000 chr7A 88.615 650 73 1 5177 5825 694349323 694349972 0.000000e+00 789.0
18 TraesCS3D01G288000 chr7B 90.909 583 52 1 5236 5817 667872921 667873503 0.000000e+00 782.0
19 TraesCS3D01G288000 chr7B 94.495 109 6 0 4182 4290 594954419 594954311 1.000000e-37 169.0
20 TraesCS3D01G288000 chr7B 77.041 196 31 7 1 192 530017244 530017059 3.710000e-17 100.0
21 TraesCS3D01G288000 chr7D 85.978 649 69 11 5175 5817 64554992 64555624 0.000000e+00 675.0
22 TraesCS3D01G288000 chr7D 92.920 113 3 1 4180 4287 390929781 390929893 6.040000e-35 159.0
23 TraesCS3D01G288000 chr7D 92.174 115 5 3 4176 4289 618216529 618216418 6.040000e-35 159.0
24 TraesCS3D01G288000 chr7D 92.453 106 8 0 4187 4292 46086973 46086868 1.010000e-32 152.0
25 TraesCS3D01G288000 chr6D 95.495 111 4 1 4181 4291 319685617 319685726 6.000000e-40 176.0
26 TraesCS3D01G288000 chr5B 94.017 117 3 1 4178 4290 386569576 386569460 2.160000e-39 174.0
27 TraesCS3D01G288000 chr5B 79.221 154 18 8 26 175 485587923 485588066 1.730000e-15 95.3
28 TraesCS3D01G288000 chr1D 94.595 111 4 1 4181 4291 76975368 76975476 2.790000e-38 171.0
29 TraesCS3D01G288000 chr1D 91.743 109 7 2 4181 4289 69110725 69110831 3.640000e-32 150.0
30 TraesCS3D01G288000 chr1B 89.916 119 10 2 4172 4289 678067354 678067237 1.010000e-32 152.0
31 TraesCS3D01G288000 chr1B 87.179 78 3 4 26 99 118164351 118164277 1.350000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G288000 chr3D 397134919 397140743 5824 True 3667.000000 10757 93.127333 1 5825 3 chr3D.!!$R2 5824
1 TraesCS3D01G288000 chr3D 54686768 54687415 647 True 918.000000 918 92.284000 5179 5825 1 chr3D.!!$R1 646
2 TraesCS3D01G288000 chr3B 522392745 522397457 4712 True 2213.333333 4462 93.266333 385 5178 3 chr3B.!!$R1 4793
3 TraesCS3D01G288000 chr3A 516552064 516556785 4721 True 2258.333333 3249 93.120333 385 5179 3 chr3A.!!$R1 4794
4 TraesCS3D01G288000 chr5A 482780212 482780851 639 False 922.000000 922 92.668000 5180 5819 1 chr5A.!!$F1 639
5 TraesCS3D01G288000 chr2A 682156695 682157336 641 True 900.000000 900 92.056000 5179 5817 1 chr2A.!!$R1 638
6 TraesCS3D01G288000 chr2B 75617422 75618067 645 False 869.000000 869 91.022000 5178 5819 1 chr2B.!!$F1 641
7 TraesCS3D01G288000 chr5D 492587124 492587705 581 False 828.000000 828 92.040000 5224 5825 1 chr5D.!!$F2 601
8 TraesCS3D01G288000 chr6B 716697787 716698430 643 True 798.000000 798 89.130000 5178 5817 1 chr6B.!!$R1 639
9 TraesCS3D01G288000 chr7A 694349323 694349972 649 False 789.000000 789 88.615000 5177 5825 1 chr7A.!!$F1 648
10 TraesCS3D01G288000 chr7B 667872921 667873503 582 False 782.000000 782 90.909000 5236 5817 1 chr7B.!!$F1 581
11 TraesCS3D01G288000 chr7D 64554992 64555624 632 False 675.000000 675 85.978000 5175 5817 1 chr7D.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 542 0.031585 CGTGGAGGAGAACAACGACA 59.968 55.000 0.00 0.0 0.00 4.35 F
659 679 0.180406 ATCTAACATGGCCGGTGGAC 59.820 55.000 1.90 0.0 0.00 4.02 F
1714 1757 0.034089 GCATTGCCTGGGACTTACCT 60.034 55.000 0.00 0.0 38.98 3.08 F
2234 2279 1.347062 TGGTACTCCTGCACACATCA 58.653 50.000 0.00 0.0 34.23 3.07 F
3442 3528 3.076621 TGCACTTGGCTAAACATGAGAG 58.923 45.455 0.00 0.0 45.15 3.20 F
3443 3529 3.244526 TGCACTTGGCTAAACATGAGAGA 60.245 43.478 0.00 0.0 45.15 3.10 F
4388 4509 1.312815 GCAGTCTGCACAGAACCTTT 58.687 50.000 20.16 0.0 44.26 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1454 2.040544 CACTAAGCCCGGCAACAGG 61.041 63.158 13.15 0.0 37.12 4.00 R
1859 1902 3.062234 GCTGACATAAGTGGTCGTTAAGC 59.938 47.826 0.00 0.0 38.10 3.09 R
2961 3040 0.320374 CGGAGCTACCTGGTGTTTCA 59.680 55.000 10.23 0.0 36.31 2.69 R
3852 3969 0.820871 ACTCCTCGTCTGAATCTGGC 59.179 55.000 0.00 0.0 0.00 4.85 R
4344 4465 0.103208 CACGCCAGTCCTCCAGATAC 59.897 60.000 0.00 0.0 0.00 2.24 R
4452 4573 0.521735 GGTCCATTCGTCCTGCAAAC 59.478 55.000 0.00 0.0 0.00 2.93 R
5574 5705 0.179004 TTTGCAGGGATCAACACGGT 60.179 50.000 0.00 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.821421 AGCTCTCCTACGGTTTAATGG 57.179 47.619 0.00 0.00 0.00 3.16
21 22 3.371965 AGCTCTCCTACGGTTTAATGGA 58.628 45.455 0.00 0.00 0.00 3.41
22 23 3.967987 AGCTCTCCTACGGTTTAATGGAT 59.032 43.478 0.00 0.00 0.00 3.41
23 24 4.058817 GCTCTCCTACGGTTTAATGGATG 58.941 47.826 0.00 0.00 0.00 3.51
24 25 4.058817 CTCTCCTACGGTTTAATGGATGC 58.941 47.826 0.00 0.00 0.00 3.91
25 26 2.800544 CTCCTACGGTTTAATGGATGCG 59.199 50.000 0.00 0.00 0.00 4.73
26 27 1.263217 CCTACGGTTTAATGGATGCGC 59.737 52.381 0.00 0.00 0.00 6.09
27 28 1.937223 CTACGGTTTAATGGATGCGCA 59.063 47.619 14.96 14.96 0.00 6.09
28 29 1.388547 ACGGTTTAATGGATGCGCAT 58.611 45.000 25.66 25.66 0.00 4.73
29 30 1.333619 ACGGTTTAATGGATGCGCATC 59.666 47.619 36.71 36.71 37.11 3.91
40 41 2.279741 GATGCGCATCCAACTTACTCA 58.720 47.619 35.11 0.00 31.76 3.41
41 42 1.438651 TGCGCATCCAACTTACTCAC 58.561 50.000 5.66 0.00 0.00 3.51
42 43 0.370273 GCGCATCCAACTTACTCACG 59.630 55.000 0.30 0.00 0.00 4.35
43 44 1.990799 CGCATCCAACTTACTCACGA 58.009 50.000 0.00 0.00 0.00 4.35
44 45 2.333926 CGCATCCAACTTACTCACGAA 58.666 47.619 0.00 0.00 0.00 3.85
45 46 2.345641 CGCATCCAACTTACTCACGAAG 59.654 50.000 0.00 0.00 0.00 3.79
46 47 3.585862 GCATCCAACTTACTCACGAAGA 58.414 45.455 0.00 0.00 0.00 2.87
47 48 3.368236 GCATCCAACTTACTCACGAAGAC 59.632 47.826 0.00 0.00 0.00 3.01
48 49 3.655276 TCCAACTTACTCACGAAGACC 57.345 47.619 0.00 0.00 0.00 3.85
49 50 3.228453 TCCAACTTACTCACGAAGACCT 58.772 45.455 0.00 0.00 0.00 3.85
50 51 4.401022 TCCAACTTACTCACGAAGACCTA 58.599 43.478 0.00 0.00 0.00 3.08
51 52 4.458295 TCCAACTTACTCACGAAGACCTAG 59.542 45.833 0.00 0.00 0.00 3.02
52 53 4.458295 CCAACTTACTCACGAAGACCTAGA 59.542 45.833 0.00 0.00 0.00 2.43
53 54 5.392165 CCAACTTACTCACGAAGACCTAGAG 60.392 48.000 0.00 0.00 0.00 2.43
54 55 3.690628 ACTTACTCACGAAGACCTAGAGC 59.309 47.826 0.00 0.00 0.00 4.09
55 56 2.500392 ACTCACGAAGACCTAGAGCT 57.500 50.000 0.00 0.00 0.00 4.09
56 57 2.361789 ACTCACGAAGACCTAGAGCTC 58.638 52.381 5.27 5.27 0.00 4.09
57 58 2.290387 ACTCACGAAGACCTAGAGCTCA 60.290 50.000 17.77 0.82 0.00 4.26
58 59 2.948979 CTCACGAAGACCTAGAGCTCAT 59.051 50.000 17.77 3.63 0.00 2.90
59 60 3.357203 TCACGAAGACCTAGAGCTCATT 58.643 45.455 17.77 0.00 0.00 2.57
60 61 3.764434 TCACGAAGACCTAGAGCTCATTT 59.236 43.478 17.77 0.00 0.00 2.32
61 62 3.862267 CACGAAGACCTAGAGCTCATTTG 59.138 47.826 17.77 3.74 0.00 2.32
62 63 3.764434 ACGAAGACCTAGAGCTCATTTGA 59.236 43.478 17.77 0.00 0.00 2.69
63 64 4.142271 ACGAAGACCTAGAGCTCATTTGAG 60.142 45.833 17.77 3.13 44.75 3.02
64 65 4.692228 GAAGACCTAGAGCTCATTTGAGG 58.308 47.826 17.77 15.32 42.29 3.86
65 66 3.987745 AGACCTAGAGCTCATTTGAGGA 58.012 45.455 17.77 0.00 42.29 3.71
66 67 3.960102 AGACCTAGAGCTCATTTGAGGAG 59.040 47.826 17.77 0.00 42.29 3.69
67 68 3.037549 ACCTAGAGCTCATTTGAGGAGG 58.962 50.000 17.77 10.68 42.29 4.30
68 69 2.224257 CCTAGAGCTCATTTGAGGAGGC 60.224 54.545 17.77 0.00 42.29 4.70
69 70 1.582389 AGAGCTCATTTGAGGAGGCT 58.418 50.000 17.77 1.10 42.29 4.58
70 71 1.485895 AGAGCTCATTTGAGGAGGCTC 59.514 52.381 17.77 5.78 42.29 4.70
71 72 1.209019 GAGCTCATTTGAGGAGGCTCA 59.791 52.381 17.69 0.00 42.29 4.26
72 73 1.845143 AGCTCATTTGAGGAGGCTCAT 59.155 47.619 17.69 9.71 42.29 2.90
73 74 2.158784 AGCTCATTTGAGGAGGCTCATC 60.159 50.000 21.52 21.52 42.29 2.92
74 75 2.421107 GCTCATTTGAGGAGGCTCATCA 60.421 50.000 26.39 26.39 42.29 3.07
75 76 3.748027 GCTCATTTGAGGAGGCTCATCAT 60.748 47.826 29.81 15.36 37.03 2.45
76 77 4.462133 CTCATTTGAGGAGGCTCATCATT 58.538 43.478 29.81 18.58 37.03 2.57
77 78 4.204799 TCATTTGAGGAGGCTCATCATTG 58.795 43.478 29.81 26.86 37.03 2.82
78 79 4.080186 TCATTTGAGGAGGCTCATCATTGA 60.080 41.667 29.81 28.31 37.03 2.57
79 80 4.305539 TTTGAGGAGGCTCATCATTGAA 57.694 40.909 29.81 19.38 37.03 2.69
80 81 4.305539 TTGAGGAGGCTCATCATTGAAA 57.694 40.909 29.81 13.91 37.03 2.69
81 82 4.515028 TGAGGAGGCTCATCATTGAAAT 57.485 40.909 26.39 0.00 31.68 2.17
82 83 5.635278 TGAGGAGGCTCATCATTGAAATA 57.365 39.130 26.39 2.60 31.68 1.40
83 84 6.196918 TGAGGAGGCTCATCATTGAAATAT 57.803 37.500 26.39 0.00 31.68 1.28
84 85 7.320384 TGAGGAGGCTCATCATTGAAATATA 57.680 36.000 26.39 1.10 31.68 0.86
85 86 7.164122 TGAGGAGGCTCATCATTGAAATATAC 58.836 38.462 26.39 0.00 31.68 1.47
86 87 7.083062 AGGAGGCTCATCATTGAAATATACA 57.917 36.000 17.69 0.00 0.00 2.29
87 88 7.520798 AGGAGGCTCATCATTGAAATATACAA 58.479 34.615 17.69 0.00 0.00 2.41
88 89 7.664731 AGGAGGCTCATCATTGAAATATACAAG 59.335 37.037 17.69 0.00 0.00 3.16
89 90 7.446625 GGAGGCTCATCATTGAAATATACAAGT 59.553 37.037 17.69 0.00 0.00 3.16
90 91 8.388484 AGGCTCATCATTGAAATATACAAGTC 57.612 34.615 0.00 0.00 0.00 3.01
91 92 7.994911 AGGCTCATCATTGAAATATACAAGTCA 59.005 33.333 0.00 0.00 0.00 3.41
92 93 8.623903 GGCTCATCATTGAAATATACAAGTCAA 58.376 33.333 0.00 0.00 34.68 3.18
93 94 9.661187 GCTCATCATTGAAATATACAAGTCAAG 57.339 33.333 0.00 0.00 33.74 3.02
110 111 9.106070 ACAAGTCAAGTTTTAGAATACGAAGTT 57.894 29.630 0.00 0.00 37.78 2.66
111 112 9.582223 CAAGTCAAGTTTTAGAATACGAAGTTC 57.418 33.333 0.00 0.00 37.78 3.01
112 113 8.307921 AGTCAAGTTTTAGAATACGAAGTTCC 57.692 34.615 0.00 0.00 37.78 3.62
113 114 8.148999 AGTCAAGTTTTAGAATACGAAGTTCCT 58.851 33.333 0.00 0.00 37.78 3.36
114 115 8.433893 GTCAAGTTTTAGAATACGAAGTTCCTC 58.566 37.037 0.00 0.00 37.78 3.71
115 116 8.145767 TCAAGTTTTAGAATACGAAGTTCCTCA 58.854 33.333 0.00 0.00 37.78 3.86
116 117 7.886405 AGTTTTAGAATACGAAGTTCCTCAC 57.114 36.000 0.00 0.00 37.78 3.51
117 118 7.668492 AGTTTTAGAATACGAAGTTCCTCACT 58.332 34.615 0.00 0.00 37.78 3.41
118 119 7.813627 AGTTTTAGAATACGAAGTTCCTCACTC 59.186 37.037 0.00 0.00 37.78 3.51
119 120 4.722361 AGAATACGAAGTTCCTCACTCC 57.278 45.455 0.00 0.00 37.78 3.85
120 121 3.447944 AGAATACGAAGTTCCTCACTCCC 59.552 47.826 0.00 0.00 37.78 4.30
121 122 1.553706 TACGAAGTTCCTCACTCCCC 58.446 55.000 0.00 0.00 37.78 4.81
122 123 1.215647 CGAAGTTCCTCACTCCCCG 59.784 63.158 0.00 0.00 32.94 5.73
123 124 1.079057 GAAGTTCCTCACTCCCCGC 60.079 63.158 0.00 0.00 32.94 6.13
124 125 1.536662 AAGTTCCTCACTCCCCGCT 60.537 57.895 0.00 0.00 32.94 5.52
125 126 0.252103 AAGTTCCTCACTCCCCGCTA 60.252 55.000 0.00 0.00 32.94 4.26
126 127 0.684805 AGTTCCTCACTCCCCGCTAG 60.685 60.000 0.00 0.00 0.00 3.42
127 128 0.971447 GTTCCTCACTCCCCGCTAGT 60.971 60.000 0.00 0.00 0.00 2.57
128 129 0.627451 TTCCTCACTCCCCGCTAGTA 59.373 55.000 0.00 0.00 0.00 1.82
129 130 0.851469 TCCTCACTCCCCGCTAGTAT 59.149 55.000 0.00 0.00 0.00 2.12
130 131 0.962489 CCTCACTCCCCGCTAGTATG 59.038 60.000 0.00 0.00 0.00 2.39
131 132 1.693627 CTCACTCCCCGCTAGTATGT 58.306 55.000 0.00 0.00 0.00 2.29
132 133 2.488528 CCTCACTCCCCGCTAGTATGTA 60.489 54.545 0.00 0.00 0.00 2.29
133 134 3.220110 CTCACTCCCCGCTAGTATGTAA 58.780 50.000 0.00 0.00 0.00 2.41
134 135 3.634504 TCACTCCCCGCTAGTATGTAAA 58.365 45.455 0.00 0.00 0.00 2.01
135 136 4.220724 TCACTCCCCGCTAGTATGTAAAT 58.779 43.478 0.00 0.00 0.00 1.40
136 137 5.387788 TCACTCCCCGCTAGTATGTAAATA 58.612 41.667 0.00 0.00 0.00 1.40
137 138 5.834742 TCACTCCCCGCTAGTATGTAAATAA 59.165 40.000 0.00 0.00 0.00 1.40
138 139 6.015688 TCACTCCCCGCTAGTATGTAAATAAG 60.016 42.308 0.00 0.00 0.00 1.73
139 140 6.015688 CACTCCCCGCTAGTATGTAAATAAGA 60.016 42.308 0.00 0.00 0.00 2.10
140 141 6.015603 ACTCCCCGCTAGTATGTAAATAAGAC 60.016 42.308 0.00 0.00 0.00 3.01
141 142 6.073314 TCCCCGCTAGTATGTAAATAAGACT 58.927 40.000 0.00 0.00 0.00 3.24
142 143 6.552350 TCCCCGCTAGTATGTAAATAAGACTT 59.448 38.462 0.00 0.00 0.00 3.01
143 144 6.645415 CCCCGCTAGTATGTAAATAAGACTTG 59.355 42.308 0.00 0.00 0.00 3.16
144 145 6.645415 CCCGCTAGTATGTAAATAAGACTTGG 59.355 42.308 0.00 0.00 0.00 3.61
145 146 6.645415 CCGCTAGTATGTAAATAAGACTTGGG 59.355 42.308 0.00 0.00 0.00 4.12
146 147 7.431249 CGCTAGTATGTAAATAAGACTTGGGA 58.569 38.462 0.00 0.00 31.03 4.37
147 148 7.924412 CGCTAGTATGTAAATAAGACTTGGGAA 59.076 37.037 0.00 0.00 31.03 3.97
148 149 9.043079 GCTAGTATGTAAATAAGACTTGGGAAC 57.957 37.037 0.00 0.00 0.00 3.62
151 152 9.047947 AGTATGTAAATAAGACTTGGGAACTCT 57.952 33.333 0.00 0.00 0.00 3.24
152 153 9.315525 GTATGTAAATAAGACTTGGGAACTCTC 57.684 37.037 0.00 0.00 0.00 3.20
153 154 7.311092 TGTAAATAAGACTTGGGAACTCTCA 57.689 36.000 0.00 0.00 0.00 3.27
154 155 7.741785 TGTAAATAAGACTTGGGAACTCTCAA 58.258 34.615 0.00 0.00 0.00 3.02
155 156 7.660208 TGTAAATAAGACTTGGGAACTCTCAAC 59.340 37.037 0.00 0.00 0.00 3.18
156 157 5.825593 ATAAGACTTGGGAACTCTCAACA 57.174 39.130 0.00 0.00 0.00 3.33
157 158 4.503714 AAGACTTGGGAACTCTCAACAA 57.496 40.909 0.00 0.00 0.00 2.83
158 159 4.713792 AGACTTGGGAACTCTCAACAAT 57.286 40.909 0.00 0.00 0.00 2.71
159 160 4.392940 AGACTTGGGAACTCTCAACAATG 58.607 43.478 0.00 0.00 0.00 2.82
160 161 4.103153 AGACTTGGGAACTCTCAACAATGA 59.897 41.667 0.00 0.00 0.00 2.57
161 162 4.792068 ACTTGGGAACTCTCAACAATGAA 58.208 39.130 0.00 0.00 34.49 2.57
162 163 5.200483 ACTTGGGAACTCTCAACAATGAAA 58.800 37.500 0.00 0.00 34.49 2.69
163 164 5.835280 ACTTGGGAACTCTCAACAATGAAAT 59.165 36.000 0.00 0.00 34.49 2.17
164 165 5.710513 TGGGAACTCTCAACAATGAAATG 57.289 39.130 0.00 0.00 34.49 2.32
165 166 4.022068 TGGGAACTCTCAACAATGAAATGC 60.022 41.667 0.00 0.00 34.49 3.56
166 167 4.022068 GGGAACTCTCAACAATGAAATGCA 60.022 41.667 0.00 0.00 34.49 3.96
167 168 5.509501 GGGAACTCTCAACAATGAAATGCAA 60.510 40.000 0.00 0.00 34.49 4.08
168 169 6.161381 GGAACTCTCAACAATGAAATGCAAT 58.839 36.000 0.00 0.00 34.49 3.56
169 170 6.090358 GGAACTCTCAACAATGAAATGCAATG 59.910 38.462 0.00 0.00 34.49 2.82
170 171 6.335471 ACTCTCAACAATGAAATGCAATGA 57.665 33.333 0.00 0.00 34.49 2.57
171 172 6.751157 ACTCTCAACAATGAAATGCAATGAA 58.249 32.000 0.00 0.00 34.49 2.57
172 173 6.866770 ACTCTCAACAATGAAATGCAATGAAG 59.133 34.615 0.00 0.00 34.49 3.02
173 174 6.751157 TCTCAACAATGAAATGCAATGAAGT 58.249 32.000 0.00 0.00 34.49 3.01
174 175 6.643360 TCTCAACAATGAAATGCAATGAAGTG 59.357 34.615 0.00 0.00 34.49 3.16
175 176 5.697178 TCAACAATGAAATGCAATGAAGTGG 59.303 36.000 0.00 0.00 31.71 4.00
176 177 5.217978 ACAATGAAATGCAATGAAGTGGT 57.782 34.783 0.00 0.00 31.71 4.16
177 178 4.992319 ACAATGAAATGCAATGAAGTGGTG 59.008 37.500 0.00 0.00 31.71 4.17
178 179 3.029320 TGAAATGCAATGAAGTGGTGC 57.971 42.857 0.00 0.00 38.78 5.01
179 180 2.629137 TGAAATGCAATGAAGTGGTGCT 59.371 40.909 0.00 0.00 39.09 4.40
180 181 3.825585 TGAAATGCAATGAAGTGGTGCTA 59.174 39.130 0.00 0.00 39.09 3.49
181 182 3.855689 AATGCAATGAAGTGGTGCTAC 57.144 42.857 0.00 0.00 39.09 3.58
182 183 2.566833 TGCAATGAAGTGGTGCTACT 57.433 45.000 0.00 0.00 39.09 2.57
183 184 2.862541 TGCAATGAAGTGGTGCTACTT 58.137 42.857 0.54 0.54 43.24 2.24
184 185 3.221771 TGCAATGAAGTGGTGCTACTTT 58.778 40.909 2.60 0.00 40.78 2.66
185 186 3.253188 TGCAATGAAGTGGTGCTACTTTC 59.747 43.478 2.60 0.00 40.78 2.62
186 187 3.253188 GCAATGAAGTGGTGCTACTTTCA 59.747 43.478 2.60 3.59 40.78 2.69
187 188 4.261572 GCAATGAAGTGGTGCTACTTTCAA 60.262 41.667 2.60 0.00 40.78 2.69
188 189 5.735922 GCAATGAAGTGGTGCTACTTTCAAA 60.736 40.000 2.60 0.00 40.78 2.69
189 190 4.893424 TGAAGTGGTGCTACTTTCAAAC 57.107 40.909 2.60 0.00 40.78 2.93
190 191 4.265893 TGAAGTGGTGCTACTTTCAAACA 58.734 39.130 2.60 0.00 40.78 2.83
191 192 4.095782 TGAAGTGGTGCTACTTTCAAACAC 59.904 41.667 2.60 0.00 40.78 3.32
192 193 3.616219 AGTGGTGCTACTTTCAAACACA 58.384 40.909 0.00 0.00 32.89 3.72
193 194 3.377172 AGTGGTGCTACTTTCAAACACAC 59.623 43.478 0.00 0.00 32.89 3.82
194 195 3.377172 GTGGTGCTACTTTCAAACACACT 59.623 43.478 0.00 0.00 32.89 3.55
195 196 4.573201 GTGGTGCTACTTTCAAACACACTA 59.427 41.667 0.00 0.00 32.89 2.74
196 197 4.573201 TGGTGCTACTTTCAAACACACTAC 59.427 41.667 0.00 0.00 32.89 2.73
197 198 4.573201 GGTGCTACTTTCAAACACACTACA 59.427 41.667 0.00 0.00 32.89 2.74
198 199 5.238650 GGTGCTACTTTCAAACACACTACAT 59.761 40.000 0.00 0.00 32.89 2.29
199 200 6.238648 GGTGCTACTTTCAAACACACTACATT 60.239 38.462 0.00 0.00 32.89 2.71
200 201 7.193595 GTGCTACTTTCAAACACACTACATTT 58.806 34.615 0.00 0.00 0.00 2.32
201 202 7.165812 GTGCTACTTTCAAACACACTACATTTG 59.834 37.037 0.00 0.00 35.15 2.32
202 203 7.148154 TGCTACTTTCAAACACACTACATTTGT 60.148 33.333 0.00 0.00 35.33 2.83
203 204 8.339714 GCTACTTTCAAACACACTACATTTGTA 58.660 33.333 0.00 0.00 35.33 2.41
204 205 9.646336 CTACTTTCAAACACACTACATTTGTAC 57.354 33.333 0.00 0.00 35.33 2.90
205 206 8.276252 ACTTTCAAACACACTACATTTGTACT 57.724 30.769 0.00 0.00 35.33 2.73
206 207 8.395633 ACTTTCAAACACACTACATTTGTACTC 58.604 33.333 0.00 0.00 35.33 2.59
207 208 8.500753 TTTCAAACACACTACATTTGTACTCT 57.499 30.769 0.00 0.00 35.33 3.24
208 209 9.602568 TTTCAAACACACTACATTTGTACTCTA 57.397 29.630 0.00 0.00 35.33 2.43
209 210 9.602568 TTCAAACACACTACATTTGTACTCTAA 57.397 29.630 0.00 0.00 35.33 2.10
210 211 9.602568 TCAAACACACTACATTTGTACTCTAAA 57.397 29.630 0.00 0.00 35.33 1.85
214 215 9.826574 ACACACTACATTTGTACTCTAAAAAGA 57.173 29.630 0.00 0.00 0.00 2.52
230 231 9.727627 CTCTAAAAAGAATAATGATGTTGCTCC 57.272 33.333 0.00 0.00 0.00 4.70
231 232 9.466497 TCTAAAAAGAATAATGATGTTGCTCCT 57.534 29.630 0.00 0.00 0.00 3.69
233 234 8.992835 AAAAAGAATAATGATGTTGCTCCTTC 57.007 30.769 0.00 0.00 0.00 3.46
234 235 7.951347 AAAGAATAATGATGTTGCTCCTTCT 57.049 32.000 0.00 0.00 0.00 2.85
235 236 7.565323 AAGAATAATGATGTTGCTCCTTCTC 57.435 36.000 0.00 0.00 0.00 2.87
236 237 6.897986 AGAATAATGATGTTGCTCCTTCTCT 58.102 36.000 0.00 0.00 0.00 3.10
237 238 6.991531 AGAATAATGATGTTGCTCCTTCTCTC 59.008 38.462 0.00 0.00 0.00 3.20
238 239 4.840716 AATGATGTTGCTCCTTCTCTCT 57.159 40.909 0.00 0.00 0.00 3.10
239 240 3.883830 TGATGTTGCTCCTTCTCTCTC 57.116 47.619 0.00 0.00 0.00 3.20
240 241 3.168292 TGATGTTGCTCCTTCTCTCTCA 58.832 45.455 0.00 0.00 0.00 3.27
241 242 3.773667 TGATGTTGCTCCTTCTCTCTCAT 59.226 43.478 0.00 0.00 0.00 2.90
242 243 4.224594 TGATGTTGCTCCTTCTCTCTCATT 59.775 41.667 0.00 0.00 0.00 2.57
243 244 4.630644 TGTTGCTCCTTCTCTCTCATTT 57.369 40.909 0.00 0.00 0.00 2.32
244 245 4.978099 TGTTGCTCCTTCTCTCTCATTTT 58.022 39.130 0.00 0.00 0.00 1.82
245 246 5.380043 TGTTGCTCCTTCTCTCTCATTTTT 58.620 37.500 0.00 0.00 0.00 1.94
246 247 6.533730 TGTTGCTCCTTCTCTCTCATTTTTA 58.466 36.000 0.00 0.00 0.00 1.52
247 248 7.170965 TGTTGCTCCTTCTCTCTCATTTTTAT 58.829 34.615 0.00 0.00 0.00 1.40
248 249 7.120285 TGTTGCTCCTTCTCTCTCATTTTTATG 59.880 37.037 0.00 0.00 0.00 1.90
249 250 5.587844 TGCTCCTTCTCTCTCATTTTTATGC 59.412 40.000 0.00 0.00 0.00 3.14
250 251 5.008514 GCTCCTTCTCTCTCATTTTTATGCC 59.991 44.000 0.00 0.00 0.00 4.40
251 252 6.319048 TCCTTCTCTCTCATTTTTATGCCT 57.681 37.500 0.00 0.00 0.00 4.75
252 253 6.725364 TCCTTCTCTCTCATTTTTATGCCTT 58.275 36.000 0.00 0.00 0.00 4.35
253 254 7.177878 TCCTTCTCTCTCATTTTTATGCCTTT 58.822 34.615 0.00 0.00 0.00 3.11
254 255 7.671398 TCCTTCTCTCTCATTTTTATGCCTTTT 59.329 33.333 0.00 0.00 0.00 2.27
255 256 8.309656 CCTTCTCTCTCATTTTTATGCCTTTTT 58.690 33.333 0.00 0.00 0.00 1.94
256 257 9.136952 CTTCTCTCTCATTTTTATGCCTTTTTG 57.863 33.333 0.00 0.00 0.00 2.44
257 258 8.408043 TCTCTCTCATTTTTATGCCTTTTTGA 57.592 30.769 0.00 0.00 0.00 2.69
258 259 9.028284 TCTCTCTCATTTTTATGCCTTTTTGAT 57.972 29.630 0.00 0.00 0.00 2.57
261 262 9.859427 CTCTCATTTTTATGCCTTTTTGATACA 57.141 29.630 0.00 0.00 0.00 2.29
267 268 9.995003 TTTTTATGCCTTTTTGATACATCTTGT 57.005 25.926 0.00 0.00 0.00 3.16
268 269 9.995003 TTTTATGCCTTTTTGATACATCTTGTT 57.005 25.926 0.00 0.00 0.00 2.83
269 270 9.995003 TTTATGCCTTTTTGATACATCTTGTTT 57.005 25.926 0.00 0.00 0.00 2.83
270 271 9.995003 TTATGCCTTTTTGATACATCTTGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
271 272 7.712264 TGCCTTTTTGATACATCTTGTTTTG 57.288 32.000 0.00 0.00 0.00 2.44
272 273 7.495901 TGCCTTTTTGATACATCTTGTTTTGA 58.504 30.769 0.00 0.00 0.00 2.69
273 274 8.149647 TGCCTTTTTGATACATCTTGTTTTGAT 58.850 29.630 0.00 0.00 0.00 2.57
274 275 8.650714 GCCTTTTTGATACATCTTGTTTTGATC 58.349 33.333 0.00 0.00 0.00 2.92
275 276 9.695526 CCTTTTTGATACATCTTGTTTTGATCA 57.304 29.630 0.00 0.00 0.00 2.92
303 304 8.821686 TTTTGGATCTCTTTTCTATAATGCCA 57.178 30.769 0.00 0.00 0.00 4.92
304 305 8.821686 TTTGGATCTCTTTTCTATAATGCCAA 57.178 30.769 0.00 0.00 0.00 4.52
305 306 8.455903 TTGGATCTCTTTTCTATAATGCCAAG 57.544 34.615 0.00 0.00 0.00 3.61
306 307 7.577303 TGGATCTCTTTTCTATAATGCCAAGT 58.423 34.615 0.00 0.00 0.00 3.16
307 308 7.716998 TGGATCTCTTTTCTATAATGCCAAGTC 59.283 37.037 0.00 0.00 0.00 3.01
308 309 7.095439 GGATCTCTTTTCTATAATGCCAAGTCG 60.095 40.741 0.00 0.00 0.00 4.18
309 310 6.640518 TCTCTTTTCTATAATGCCAAGTCGT 58.359 36.000 0.00 0.00 0.00 4.34
310 311 7.778083 TCTCTTTTCTATAATGCCAAGTCGTA 58.222 34.615 0.00 0.00 0.00 3.43
311 312 7.921214 TCTCTTTTCTATAATGCCAAGTCGTAG 59.079 37.037 0.00 0.00 0.00 3.51
312 313 6.479001 TCTTTTCTATAATGCCAAGTCGTAGC 59.521 38.462 0.00 0.00 0.00 3.58
313 314 3.897325 TCTATAATGCCAAGTCGTAGCG 58.103 45.455 0.00 0.00 0.00 4.26
314 315 2.882927 ATAATGCCAAGTCGTAGCGA 57.117 45.000 0.00 0.00 0.00 4.93
315 316 2.203800 TAATGCCAAGTCGTAGCGAG 57.796 50.000 0.00 0.00 36.23 5.03
316 317 0.530744 AATGCCAAGTCGTAGCGAGA 59.469 50.000 0.00 0.00 36.23 4.04
317 318 0.530744 ATGCCAAGTCGTAGCGAGAA 59.469 50.000 0.00 0.00 36.23 2.87
318 319 0.109272 TGCCAAGTCGTAGCGAGAAG 60.109 55.000 0.00 0.00 36.23 2.85
319 320 0.109226 GCCAAGTCGTAGCGAGAAGT 60.109 55.000 0.00 0.00 36.23 3.01
320 321 1.618861 CCAAGTCGTAGCGAGAAGTG 58.381 55.000 0.00 0.00 36.23 3.16
321 322 1.618861 CAAGTCGTAGCGAGAAGTGG 58.381 55.000 0.00 0.00 36.23 4.00
322 323 1.199327 CAAGTCGTAGCGAGAAGTGGA 59.801 52.381 0.00 0.00 36.23 4.02
323 324 1.088306 AGTCGTAGCGAGAAGTGGAG 58.912 55.000 0.00 0.00 36.23 3.86
324 325 0.099082 GTCGTAGCGAGAAGTGGAGG 59.901 60.000 0.00 0.00 36.23 4.30
325 326 1.226717 CGTAGCGAGAAGTGGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
326 327 1.890894 GTAGCGAGAAGTGGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
327 328 0.179124 GTAGCGAGAAGTGGAGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
328 329 1.949847 TAGCGAGAAGTGGAGGCAGC 61.950 60.000 0.00 0.00 0.00 5.25
329 330 2.659016 CGAGAAGTGGAGGCAGCA 59.341 61.111 0.00 0.00 0.00 4.41
330 331 1.447489 CGAGAAGTGGAGGCAGCAG 60.447 63.158 0.00 0.00 0.00 4.24
331 332 1.078567 GAGAAGTGGAGGCAGCAGG 60.079 63.158 0.00 0.00 0.00 4.85
332 333 1.537397 AGAAGTGGAGGCAGCAGGA 60.537 57.895 0.00 0.00 0.00 3.86
333 334 1.130054 AGAAGTGGAGGCAGCAGGAA 61.130 55.000 0.00 0.00 0.00 3.36
334 335 0.676151 GAAGTGGAGGCAGCAGGAAG 60.676 60.000 0.00 0.00 0.00 3.46
335 336 1.130054 AAGTGGAGGCAGCAGGAAGA 61.130 55.000 0.00 0.00 0.00 2.87
336 337 1.376553 GTGGAGGCAGCAGGAAGAC 60.377 63.158 0.00 0.00 0.00 3.01
337 338 1.842920 TGGAGGCAGCAGGAAGACA 60.843 57.895 0.00 0.00 0.00 3.41
338 339 1.078567 GGAGGCAGCAGGAAGACAG 60.079 63.158 0.00 0.00 0.00 3.51
339 340 1.744741 GAGGCAGCAGGAAGACAGC 60.745 63.158 0.00 0.00 0.00 4.40
340 341 3.123620 GGCAGCAGGAAGACAGCG 61.124 66.667 0.00 0.00 0.00 5.18
341 342 3.123620 GCAGCAGGAAGACAGCGG 61.124 66.667 0.00 0.00 0.00 5.52
342 343 3.123620 CAGCAGGAAGACAGCGGC 61.124 66.667 0.00 0.00 0.00 6.53
343 344 4.749310 AGCAGGAAGACAGCGGCG 62.749 66.667 0.51 0.51 0.00 6.46
348 349 4.077188 GAAGACAGCGGCGCACAC 62.077 66.667 35.02 22.46 0.00 3.82
378 379 4.847444 GGCAGCCGCTCCCTCTTC 62.847 72.222 0.00 0.00 38.60 2.87
379 380 3.780173 GCAGCCGCTCCCTCTTCT 61.780 66.667 0.00 0.00 34.30 2.85
380 381 2.498726 CAGCCGCTCCCTCTTCTC 59.501 66.667 0.00 0.00 0.00 2.87
381 382 2.762043 AGCCGCTCCCTCTTCTCC 60.762 66.667 0.00 0.00 0.00 3.71
382 383 2.762043 GCCGCTCCCTCTTCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
383 384 2.791868 GCCGCTCCCTCTTCTCCTC 61.792 68.421 0.00 0.00 0.00 3.71
390 391 0.914644 CCCTCTTCTCCTCATGCCAA 59.085 55.000 0.00 0.00 0.00 4.52
396 397 1.847328 TCTCCTCATGCCAAGTCGTA 58.153 50.000 0.00 0.00 0.00 3.43
412 413 1.226717 GTAGCGAGAAGTGGAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
415 416 4.069232 CGAGAAGTGGAGGCGGCA 62.069 66.667 13.08 0.00 0.00 5.69
427 428 3.423154 GCGGCAGGAAGACAACGG 61.423 66.667 0.00 0.00 0.00 4.44
431 432 1.891919 GCAGGAAGACAACGGTGCA 60.892 57.895 0.00 0.00 0.00 4.57
470 483 4.150454 CGCTCCCCCTCCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
476 489 1.695597 CCCCTCCTCCTCTGGCAAT 60.696 63.158 0.00 0.00 0.00 3.56
490 503 1.886777 GCAATCGCCTCTCCTCTGC 60.887 63.158 0.00 0.00 0.00 4.26
506 519 2.881352 GCCGAACTTCGCTCCTCG 60.881 66.667 5.61 0.00 38.82 4.63
508 521 1.801913 CCGAACTTCGCTCCTCGTG 60.802 63.158 5.61 0.00 38.82 4.35
524 542 0.031585 CGTGGAGGAGAACAACGACA 59.968 55.000 0.00 0.00 0.00 4.35
580 598 2.114411 GAGGGCGGTGGTGGAAAA 59.886 61.111 0.00 0.00 0.00 2.29
610 630 2.734606 TGGTTATGCTGTATATTCGCGC 59.265 45.455 0.00 0.00 0.00 6.86
615 635 1.615107 GCTGTATATTCGCGCGGTCC 61.615 60.000 31.69 12.45 0.00 4.46
627 647 2.831366 GCGGTCCGATACGAGAGCA 61.831 63.158 17.49 0.00 0.00 4.26
629 649 0.317103 CGGTCCGATACGAGAGCAAG 60.317 60.000 4.91 0.00 0.00 4.01
634 654 1.135046 CGATACGAGAGCAAGCATGG 58.865 55.000 0.00 0.00 0.00 3.66
644 664 3.920231 AGCAAGCATGGTCAGAATCTA 57.080 42.857 0.00 0.00 29.35 1.98
652 672 3.281727 TGGTCAGAATCTAACATGGCC 57.718 47.619 0.00 0.00 37.94 5.36
654 674 2.213499 GTCAGAATCTAACATGGCCGG 58.787 52.381 0.00 0.00 0.00 6.13
659 679 0.180406 ATCTAACATGGCCGGTGGAC 59.820 55.000 1.90 0.00 0.00 4.02
661 681 2.886730 CTAACATGGCCGGTGGACCC 62.887 65.000 1.90 0.00 0.00 4.46
679 699 4.083600 GTGCGGCGATTCGTGCAA 62.084 61.111 23.04 10.06 40.48 4.08
706 726 1.451387 GACGGACGGGGCATCATTT 60.451 57.895 0.00 0.00 0.00 2.32
712 732 1.401905 GACGGGGCATCATTTGTCTTC 59.598 52.381 0.00 0.00 0.00 2.87
720 740 5.126707 GGGCATCATTTGTCTTCAATCTCTT 59.873 40.000 0.00 0.00 33.32 2.85
724 744 9.070149 GCATCATTTGTCTTCAATCTCTTAAAC 57.930 33.333 0.00 0.00 33.32 2.01
731 751 7.726216 TGTCTTCAATCTCTTAAACTCAGACA 58.274 34.615 0.00 0.00 35.67 3.41
735 755 8.539770 TTCAATCTCTTAAACTCAGACATCAC 57.460 34.615 0.00 0.00 0.00 3.06
743 764 8.721478 TCTTAAACTCAGACATCACATTTTAGC 58.279 33.333 0.00 0.00 0.00 3.09
767 788 5.220340 CGATTCCGTAATATTTATCCCACGC 60.220 44.000 0.00 0.00 0.00 5.34
775 796 0.457166 TTTATCCCACGCGACACTCG 60.457 55.000 15.93 0.00 43.89 4.18
788 809 4.110482 GCGACACTCGTAAAATACCATCT 58.890 43.478 0.00 0.00 42.81 2.90
816 837 2.236395 CCCAAACACTAGACGGGAAGAT 59.764 50.000 0.00 0.00 39.44 2.40
818 839 3.684788 CCAAACACTAGACGGGAAGATTG 59.315 47.826 0.00 0.00 0.00 2.67
894 915 3.190874 GCGCTGCTACTGATCTTTAAGT 58.809 45.455 0.00 0.00 0.00 2.24
947 968 1.376037 CAAAGACGGCCACTCCCTC 60.376 63.158 2.24 0.00 0.00 4.30
1048 1082 1.218047 CCGGCCTCTTTCATCGTGA 59.782 57.895 0.00 0.00 0.00 4.35
1096 1130 1.303643 CCAACCCCAAGAGGTGAGC 60.304 63.158 0.00 0.00 40.05 4.26
1097 1131 1.763770 CAACCCCAAGAGGTGAGCT 59.236 57.895 0.00 0.00 40.05 4.09
1305 1339 0.730840 CGGCGGTAACTTCAAATCCC 59.269 55.000 0.00 0.00 0.00 3.85
1329 1363 1.774727 GCTTTTGCATGTTTCGCCG 59.225 52.632 0.00 0.00 46.58 6.46
1336 1370 2.357034 ATGTTTCGCCGTCGCAGT 60.357 55.556 0.00 0.00 35.26 4.40
1393 1430 2.386661 TTCCTGGCGACTCTGAATTC 57.613 50.000 0.00 0.00 0.00 2.17
1476 1519 4.614555 ATGTGTGTGTGTAACTTGTGTG 57.385 40.909 0.00 0.00 38.04 3.82
1587 1630 4.867047 CAGATTATCGATCCTGATTTCGGG 59.133 45.833 0.00 0.00 43.86 5.14
1611 1654 0.391597 ACATCGTCTCGTGTGGGTTT 59.608 50.000 0.00 0.00 0.00 3.27
1714 1757 0.034089 GCATTGCCTGGGACTTACCT 60.034 55.000 0.00 0.00 38.98 3.08
1859 1902 3.975992 GCATAAGTCAGTGCCAACG 57.024 52.632 0.00 0.00 35.35 4.10
1907 1951 3.624900 CTTCAATTGCTATGCATCGGTG 58.375 45.455 0.19 0.00 38.76 4.94
1923 1967 1.609061 CGGTGGATCTGCACTTGAACT 60.609 52.381 1.81 0.00 0.00 3.01
1961 2005 1.877637 AGTGCTGTGCAATGACGTTA 58.122 45.000 0.00 0.00 41.47 3.18
2034 2079 4.166187 GGCTTTGCCTAAAACTCTTCTG 57.834 45.455 0.73 0.00 46.69 3.02
2035 2080 3.569548 GCTTTGCCTAAAACTCTTCTGC 58.430 45.455 0.00 0.00 0.00 4.26
2098 2143 1.619654 CAGCACTTCCATGGGTCAAA 58.380 50.000 13.02 0.00 0.00 2.69
2234 2279 1.347062 TGGTACTCCTGCACACATCA 58.653 50.000 0.00 0.00 34.23 3.07
2463 2509 8.190784 GGTTGGATCTTTATGTTAACATGGAAG 58.809 37.037 27.62 26.34 37.15 3.46
2470 2516 9.787435 TCTTTATGTTAACATGGAAGTTAGTGT 57.213 29.630 27.62 3.30 37.15 3.55
2737 2815 7.522725 GCCATTACTTCCAGCTACTACGTATAA 60.523 40.741 0.00 0.00 0.00 0.98
2738 2816 8.521176 CCATTACTTCCAGCTACTACGTATAAT 58.479 37.037 0.00 0.00 0.00 1.28
2739 2817 9.343103 CATTACTTCCAGCTACTACGTATAATG 57.657 37.037 0.00 0.00 0.00 1.90
2740 2818 5.770417 ACTTCCAGCTACTACGTATAATGC 58.230 41.667 0.00 0.00 0.00 3.56
2746 2824 5.926542 CAGCTACTACGTATAATGCACCAAT 59.073 40.000 0.00 0.00 0.00 3.16
2747 2825 6.423905 CAGCTACTACGTATAATGCACCAATT 59.576 38.462 0.00 0.00 0.00 2.32
2753 2831 9.820725 ACTACGTATAATGCACCAATTAGTTTA 57.179 29.630 0.00 0.00 0.00 2.01
2801 2880 7.270757 ACTTGACACTGTTGTTTATTGCATA 57.729 32.000 0.00 0.00 35.47 3.14
2802 2881 7.711846 ACTTGACACTGTTGTTTATTGCATAA 58.288 30.769 0.00 0.00 35.47 1.90
2888 2967 3.181427 ACTCTGTCAGGTGGTTCTCTAGT 60.181 47.826 0.00 0.00 0.00 2.57
2939 3018 9.482627 CCTAGTGAATTAGGATCATACTGAAAC 57.517 37.037 0.00 0.00 42.39 2.78
2961 3040 3.243434 CCATCTCGAAGTATAACACGCCT 60.243 47.826 0.00 0.00 0.00 5.52
3243 3322 3.645687 CCCATTTGGAAAAGGTTCTGGAA 59.354 43.478 0.00 0.00 37.39 3.53
3328 3407 4.975502 TGAGTTTGTTCGACAATGCAATTC 59.024 37.500 0.00 0.00 38.00 2.17
3441 3527 3.138884 TGCACTTGGCTAAACATGAGA 57.861 42.857 0.00 0.00 45.15 3.27
3442 3528 3.076621 TGCACTTGGCTAAACATGAGAG 58.923 45.455 0.00 0.00 45.15 3.20
3443 3529 3.244526 TGCACTTGGCTAAACATGAGAGA 60.245 43.478 0.00 0.00 45.15 3.10
3610 3696 7.658261 AGACAACAAGGTAAATTAAAAGCTCC 58.342 34.615 0.00 0.00 0.00 4.70
3611 3697 7.286775 AGACAACAAGGTAAATTAAAAGCTCCA 59.713 33.333 0.00 0.00 0.00 3.86
3612 3698 7.787028 ACAACAAGGTAAATTAAAAGCTCCAA 58.213 30.769 0.00 0.00 0.00 3.53
3613 3699 8.261522 ACAACAAGGTAAATTAAAAGCTCCAAA 58.738 29.630 0.00 0.00 0.00 3.28
3614 3700 8.547894 CAACAAGGTAAATTAAAAGCTCCAAAC 58.452 33.333 0.00 0.00 0.00 2.93
3615 3701 8.018537 ACAAGGTAAATTAAAAGCTCCAAACT 57.981 30.769 0.00 0.00 0.00 2.66
3616 3702 9.138596 ACAAGGTAAATTAAAAGCTCCAAACTA 57.861 29.630 0.00 0.00 0.00 2.24
3749 3866 8.826546 CATGTGTTGCACTATAAAACATACTC 57.173 34.615 0.00 0.00 36.31 2.59
3750 3867 7.372451 TGTGTTGCACTATAAAACATACTCC 57.628 36.000 0.00 0.00 36.31 3.85
3751 3868 6.937465 TGTGTTGCACTATAAAACATACTCCA 59.063 34.615 0.00 0.00 36.31 3.86
3752 3869 7.445707 TGTGTTGCACTATAAAACATACTCCAA 59.554 33.333 0.00 0.00 36.31 3.53
3753 3870 7.749126 GTGTTGCACTATAAAACATACTCCAAC 59.251 37.037 0.00 0.00 36.31 3.77
3754 3871 7.445707 TGTTGCACTATAAAACATACTCCAACA 59.554 33.333 0.00 0.00 36.37 3.33
3755 3872 7.372451 TGCACTATAAAACATACTCCAACAC 57.628 36.000 0.00 0.00 0.00 3.32
3756 3873 7.165485 TGCACTATAAAACATACTCCAACACT 58.835 34.615 0.00 0.00 0.00 3.55
3757 3874 7.663905 TGCACTATAAAACATACTCCAACACTT 59.336 33.333 0.00 0.00 0.00 3.16
3852 3969 6.981762 ATTAGAGCAATCAGAGTGAAAGTG 57.018 37.500 0.94 0.00 0.00 3.16
3864 3981 3.406764 AGTGAAAGTGCCAGATTCAGAC 58.593 45.455 0.00 0.00 34.02 3.51
3965 4082 9.764363 TCCTTATGATGCGTTGGATATATATTC 57.236 33.333 0.00 0.00 0.00 1.75
4109 4227 9.605955 CGAACATCTAAATGTGTGTTATTTTGA 57.394 29.630 0.00 0.00 45.48 2.69
4186 4304 6.593268 AAACCAGACTAAAGAGAGTACTCC 57.407 41.667 19.38 10.83 43.53 3.85
4187 4305 4.602107 ACCAGACTAAAGAGAGTACTCCC 58.398 47.826 19.38 7.90 43.53 4.30
4188 4306 4.292836 ACCAGACTAAAGAGAGTACTCCCT 59.707 45.833 19.38 10.47 43.53 4.20
4191 4309 5.588648 CAGACTAAAGAGAGTACTCCCTCTG 59.411 48.000 19.38 11.85 41.85 3.35
4192 4310 5.252164 AGACTAAAGAGAGTACTCCCTCTGT 59.748 44.000 19.38 13.58 41.85 3.41
4194 4312 7.030234 ACTAAAGAGAGTACTCCCTCTGTAA 57.970 40.000 19.38 5.50 41.85 2.41
4196 4314 6.593268 AAAGAGAGTACTCCCTCTGTAAAC 57.407 41.667 19.38 0.00 41.85 2.01
4197 4315 5.523883 AGAGAGTACTCCCTCTGTAAACT 57.476 43.478 19.38 0.00 41.85 2.66
4201 4319 8.780003 AGAGAGTACTCCCTCTGTAAACTAATA 58.220 37.037 19.38 0.00 41.85 0.98
4202 4320 9.577222 GAGAGTACTCCCTCTGTAAACTAATAT 57.423 37.037 19.38 0.00 41.85 1.28
4209 4327 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
4210 4328 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
4242 4360 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4243 4361 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4244 4362 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4245 4363 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4252 4370 9.900710 AGTGATCTAAACGCTCTTATATTAGTG 57.099 33.333 0.00 0.00 0.00 2.74
4253 4371 9.894783 GTGATCTAAACGCTCTTATATTAGTGA 57.105 33.333 0.00 0.00 0.00 3.41
4262 4380 9.680315 ACGCTCTTATATTAGTGATCTAAACAC 57.320 33.333 0.00 0.00 39.23 3.32
4283 4401 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
4284 4402 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
4285 4403 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
4286 4404 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
4287 4405 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
4290 4408 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
4344 4465 1.662629 CCTACAGCGCTCAAGATTGTG 59.337 52.381 7.13 0.00 0.00 3.33
4388 4509 1.312815 GCAGTCTGCACAGAACCTTT 58.687 50.000 20.16 0.00 44.26 3.11
4394 4515 2.555547 GCACAGAACCTTTGCGCCT 61.556 57.895 4.18 0.00 0.00 5.52
4405 4526 1.785041 TTTGCGCCTGCTGTCTTCAC 61.785 55.000 4.18 0.00 43.34 3.18
4480 4601 1.218047 CGAATGGACCGGAGAGCAA 59.782 57.895 9.46 0.00 0.00 3.91
4489 4610 3.135994 GACCGGAGAGCAAAAAGTACAA 58.864 45.455 9.46 0.00 0.00 2.41
4725 4846 3.976942 GCAAGACCTAAAATGCATATGCG 59.023 43.478 22.21 8.88 45.83 4.73
4961 5084 8.915654 CAGTGTAGAAAAAGCAATGTTTATTCC 58.084 33.333 0.00 0.00 0.00 3.01
5062 5185 7.273815 GTGAACTTAAGTGCTCATAGACAGTAC 59.726 40.741 14.83 0.00 0.00 2.73
5073 5196 6.570571 GCTCATAGACAGTACACTTCAGTTGA 60.571 42.308 0.00 0.00 0.00 3.18
5091 5214 7.436933 TCAGTTGAATTCAGACTATGCGATAT 58.563 34.615 17.33 0.00 0.00 1.63
5128 5251 2.673368 CACCTATCGCACTTTTCTGTCC 59.327 50.000 0.00 0.00 0.00 4.02
5165 5289 4.853924 AAACAAGGGTTTAGCATGTCAG 57.146 40.909 0.00 0.00 45.12 3.51
5574 5705 2.159099 CGCAGATGCTCCAAGGTAGTTA 60.159 50.000 2.95 0.00 39.32 2.24
5616 5747 2.048127 GCTGAAGCTCCCGTCGTT 60.048 61.111 0.00 0.00 38.21 3.85
5728 5861 0.314302 CTGTCTCGTCGGTGTCCTTT 59.686 55.000 0.00 0.00 0.00 3.11
5758 5891 5.567423 GCAATTTCCAAGTCCTGCAAGTATT 60.567 40.000 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.370526 GATGCGCATCCATTAAACCGTAGG 62.371 50.000 35.11 0.00 42.54 3.18
7 8 1.937223 TGCGCATCCATTAAACCGTAG 59.063 47.619 5.66 0.00 0.00 3.51
8 9 2.025589 TGCGCATCCATTAAACCGTA 57.974 45.000 5.66 0.00 0.00 4.02
9 10 1.333619 GATGCGCATCCATTAAACCGT 59.666 47.619 35.11 4.90 31.76 4.83
10 11 2.036556 GATGCGCATCCATTAAACCG 57.963 50.000 35.11 0.00 31.76 4.44
20 21 2.030946 GTGAGTAAGTTGGATGCGCATC 59.969 50.000 36.71 36.71 37.11 3.91
21 22 2.009774 GTGAGTAAGTTGGATGCGCAT 58.990 47.619 25.66 25.66 0.00 4.73
22 23 1.438651 GTGAGTAAGTTGGATGCGCA 58.561 50.000 14.96 14.96 0.00 6.09
23 24 0.370273 CGTGAGTAAGTTGGATGCGC 59.630 55.000 0.00 0.00 0.00 6.09
24 25 1.990799 TCGTGAGTAAGTTGGATGCG 58.009 50.000 0.00 0.00 0.00 4.73
25 26 3.368236 GTCTTCGTGAGTAAGTTGGATGC 59.632 47.826 0.00 0.00 0.00 3.91
26 27 3.927142 GGTCTTCGTGAGTAAGTTGGATG 59.073 47.826 0.00 0.00 0.00 3.51
27 28 3.833070 AGGTCTTCGTGAGTAAGTTGGAT 59.167 43.478 0.00 0.00 0.00 3.41
28 29 3.228453 AGGTCTTCGTGAGTAAGTTGGA 58.772 45.455 0.00 0.00 0.00 3.53
29 30 3.662247 AGGTCTTCGTGAGTAAGTTGG 57.338 47.619 0.00 0.00 0.00 3.77
30 31 5.624344 TCTAGGTCTTCGTGAGTAAGTTG 57.376 43.478 0.00 0.00 0.00 3.16
31 32 4.156373 GCTCTAGGTCTTCGTGAGTAAGTT 59.844 45.833 0.00 0.00 0.00 2.66
32 33 3.690628 GCTCTAGGTCTTCGTGAGTAAGT 59.309 47.826 0.00 0.00 0.00 2.24
33 34 3.942748 AGCTCTAGGTCTTCGTGAGTAAG 59.057 47.826 0.00 0.00 0.00 2.34
34 35 3.940221 GAGCTCTAGGTCTTCGTGAGTAA 59.060 47.826 6.43 0.00 39.31 2.24
35 36 3.055312 TGAGCTCTAGGTCTTCGTGAGTA 60.055 47.826 16.19 0.00 42.60 2.59
36 37 2.290387 TGAGCTCTAGGTCTTCGTGAGT 60.290 50.000 16.19 0.00 42.60 3.41
37 38 2.360844 TGAGCTCTAGGTCTTCGTGAG 58.639 52.381 16.19 0.00 42.60 3.51
38 39 2.491675 TGAGCTCTAGGTCTTCGTGA 57.508 50.000 16.19 0.00 42.60 4.35
39 40 3.791973 AATGAGCTCTAGGTCTTCGTG 57.208 47.619 16.19 0.00 42.60 4.35
40 41 3.764434 TCAAATGAGCTCTAGGTCTTCGT 59.236 43.478 16.19 0.00 42.60 3.85
41 42 4.358851 CTCAAATGAGCTCTAGGTCTTCG 58.641 47.826 16.19 0.95 42.60 3.79
42 43 4.404073 TCCTCAAATGAGCTCTAGGTCTTC 59.596 45.833 16.19 0.00 42.60 2.87
43 44 4.357325 TCCTCAAATGAGCTCTAGGTCTT 58.643 43.478 16.19 1.68 42.60 3.01
44 45 3.960102 CTCCTCAAATGAGCTCTAGGTCT 59.040 47.826 16.19 0.00 42.60 3.85
45 46 3.069443 CCTCCTCAAATGAGCTCTAGGTC 59.931 52.174 16.19 2.22 40.75 3.85
46 47 3.037549 CCTCCTCAAATGAGCTCTAGGT 58.962 50.000 16.19 0.00 40.75 3.08
47 48 2.224257 GCCTCCTCAAATGAGCTCTAGG 60.224 54.545 16.19 13.09 40.75 3.02
48 49 2.699846 AGCCTCCTCAAATGAGCTCTAG 59.300 50.000 16.19 4.66 40.75 2.43
49 50 2.697751 GAGCCTCCTCAAATGAGCTCTA 59.302 50.000 16.19 1.49 40.75 2.43
50 51 1.485895 GAGCCTCCTCAAATGAGCTCT 59.514 52.381 16.19 0.00 40.75 4.09
51 52 1.209019 TGAGCCTCCTCAAATGAGCTC 59.791 52.381 6.82 6.82 44.79 4.09
52 53 1.283347 TGAGCCTCCTCAAATGAGCT 58.717 50.000 4.87 0.00 44.79 4.09
53 54 3.869623 TGAGCCTCCTCAAATGAGC 57.130 52.632 4.87 0.00 44.79 4.26
61 62 7.164122 TGTATATTTCAATGATGAGCCTCCTC 58.836 38.462 0.00 0.00 36.78 3.71
62 63 7.083062 TGTATATTTCAATGATGAGCCTCCT 57.917 36.000 0.00 0.00 36.78 3.69
63 64 7.446625 ACTTGTATATTTCAATGATGAGCCTCC 59.553 37.037 0.00 0.00 36.78 4.30
64 65 8.388484 ACTTGTATATTTCAATGATGAGCCTC 57.612 34.615 0.00 0.00 36.78 4.70
65 66 7.994911 TGACTTGTATATTTCAATGATGAGCCT 59.005 33.333 0.00 0.00 36.78 4.58
66 67 8.158169 TGACTTGTATATTTCAATGATGAGCC 57.842 34.615 0.00 0.00 36.78 4.70
67 68 9.661187 CTTGACTTGTATATTTCAATGATGAGC 57.339 33.333 0.00 0.00 36.78 4.26
83 84 9.754382 ACTTCGTATTCTAAAACTTGACTTGTA 57.246 29.630 0.00 0.00 0.00 2.41
84 85 8.658499 ACTTCGTATTCTAAAACTTGACTTGT 57.342 30.769 0.00 0.00 0.00 3.16
85 86 9.582223 GAACTTCGTATTCTAAAACTTGACTTG 57.418 33.333 0.00 0.00 0.00 3.16
86 87 8.771766 GGAACTTCGTATTCTAAAACTTGACTT 58.228 33.333 0.00 0.00 0.00 3.01
87 88 8.148999 AGGAACTTCGTATTCTAAAACTTGACT 58.851 33.333 0.00 0.00 27.25 3.41
88 89 8.307921 AGGAACTTCGTATTCTAAAACTTGAC 57.692 34.615 0.00 0.00 27.25 3.18
89 90 8.145767 TGAGGAACTTCGTATTCTAAAACTTGA 58.854 33.333 0.00 0.00 41.55 3.02
90 91 8.221766 GTGAGGAACTTCGTATTCTAAAACTTG 58.778 37.037 0.00 0.00 41.55 3.16
91 92 8.148999 AGTGAGGAACTTCGTATTCTAAAACTT 58.851 33.333 0.00 0.00 41.55 2.66
92 93 7.668492 AGTGAGGAACTTCGTATTCTAAAACT 58.332 34.615 0.00 0.00 41.55 2.66
93 94 7.063191 GGAGTGAGGAACTTCGTATTCTAAAAC 59.937 40.741 0.00 0.00 41.55 2.43
94 95 7.095270 GGAGTGAGGAACTTCGTATTCTAAAA 58.905 38.462 0.00 0.00 41.55 1.52
95 96 6.350780 GGGAGTGAGGAACTTCGTATTCTAAA 60.351 42.308 0.00 0.00 41.55 1.85
96 97 5.126707 GGGAGTGAGGAACTTCGTATTCTAA 59.873 44.000 0.00 0.00 41.55 2.10
97 98 4.643784 GGGAGTGAGGAACTTCGTATTCTA 59.356 45.833 0.00 0.00 41.55 2.10
98 99 3.447944 GGGAGTGAGGAACTTCGTATTCT 59.552 47.826 0.00 0.00 41.55 2.40
99 100 3.430513 GGGGAGTGAGGAACTTCGTATTC 60.431 52.174 0.00 0.00 41.55 1.75
100 101 2.500504 GGGGAGTGAGGAACTTCGTATT 59.499 50.000 0.00 0.00 41.55 1.89
101 102 2.108970 GGGGAGTGAGGAACTTCGTAT 58.891 52.381 0.00 0.00 41.55 3.06
102 103 1.553706 GGGGAGTGAGGAACTTCGTA 58.446 55.000 0.00 0.00 41.55 3.43
103 104 1.533469 CGGGGAGTGAGGAACTTCGT 61.533 60.000 0.00 0.00 41.55 3.85
104 105 1.215647 CGGGGAGTGAGGAACTTCG 59.784 63.158 0.00 0.00 41.55 3.79
105 106 1.079057 GCGGGGAGTGAGGAACTTC 60.079 63.158 0.00 0.00 41.55 3.01
106 107 0.252103 TAGCGGGGAGTGAGGAACTT 60.252 55.000 0.00 0.00 41.55 2.66
108 109 0.971447 ACTAGCGGGGAGTGAGGAAC 60.971 60.000 0.00 0.00 0.00 3.62
109 110 0.627451 TACTAGCGGGGAGTGAGGAA 59.373 55.000 0.00 0.00 0.00 3.36
110 111 0.851469 ATACTAGCGGGGAGTGAGGA 59.149 55.000 0.00 0.00 0.00 3.71
111 112 0.962489 CATACTAGCGGGGAGTGAGG 59.038 60.000 0.00 0.00 0.00 3.86
112 113 1.693627 ACATACTAGCGGGGAGTGAG 58.306 55.000 0.00 0.00 0.00 3.51
113 114 3.301794 TTACATACTAGCGGGGAGTGA 57.698 47.619 0.00 0.00 0.00 3.41
114 115 4.602340 ATTTACATACTAGCGGGGAGTG 57.398 45.455 0.00 0.00 0.00 3.51
115 116 6.015603 GTCTTATTTACATACTAGCGGGGAGT 60.016 42.308 0.00 0.00 0.00 3.85
116 117 6.208994 AGTCTTATTTACATACTAGCGGGGAG 59.791 42.308 0.00 0.00 0.00 4.30
117 118 6.073314 AGTCTTATTTACATACTAGCGGGGA 58.927 40.000 0.00 0.00 0.00 4.81
118 119 6.342338 AGTCTTATTTACATACTAGCGGGG 57.658 41.667 0.00 0.00 0.00 5.73
119 120 6.645415 CCAAGTCTTATTTACATACTAGCGGG 59.355 42.308 0.00 0.00 0.00 6.13
120 121 6.645415 CCCAAGTCTTATTTACATACTAGCGG 59.355 42.308 0.00 0.00 0.00 5.52
121 122 7.431249 TCCCAAGTCTTATTTACATACTAGCG 58.569 38.462 0.00 0.00 0.00 4.26
122 123 9.043079 GTTCCCAAGTCTTATTTACATACTAGC 57.957 37.037 0.00 0.00 0.00 3.42
125 126 9.047947 AGAGTTCCCAAGTCTTATTTACATACT 57.952 33.333 0.00 0.00 37.96 2.12
126 127 9.315525 GAGAGTTCCCAAGTCTTATTTACATAC 57.684 37.037 0.00 0.00 41.17 2.39
127 128 9.042450 TGAGAGTTCCCAAGTCTTATTTACATA 57.958 33.333 0.00 0.00 41.17 2.29
128 129 7.918076 TGAGAGTTCCCAAGTCTTATTTACAT 58.082 34.615 0.00 0.00 41.17 2.29
129 130 7.311092 TGAGAGTTCCCAAGTCTTATTTACA 57.689 36.000 0.00 0.00 41.17 2.41
130 131 7.660208 TGTTGAGAGTTCCCAAGTCTTATTTAC 59.340 37.037 0.00 0.00 41.17 2.01
131 132 7.741785 TGTTGAGAGTTCCCAAGTCTTATTTA 58.258 34.615 0.00 0.00 41.17 1.40
132 133 6.601332 TGTTGAGAGTTCCCAAGTCTTATTT 58.399 36.000 0.00 0.00 41.17 1.40
133 134 6.187727 TGTTGAGAGTTCCCAAGTCTTATT 57.812 37.500 0.00 0.00 41.17 1.40
134 135 5.825593 TGTTGAGAGTTCCCAAGTCTTAT 57.174 39.130 0.00 0.00 41.17 1.73
135 136 5.623956 TTGTTGAGAGTTCCCAAGTCTTA 57.376 39.130 0.00 0.00 41.17 2.10
136 137 4.503714 TTGTTGAGAGTTCCCAAGTCTT 57.496 40.909 0.00 0.00 41.17 3.01
137 138 4.103153 TCATTGTTGAGAGTTCCCAAGTCT 59.897 41.667 0.00 0.00 43.71 3.24
138 139 4.389374 TCATTGTTGAGAGTTCCCAAGTC 58.611 43.478 0.00 0.00 0.00 3.01
139 140 4.437682 TCATTGTTGAGAGTTCCCAAGT 57.562 40.909 0.00 0.00 0.00 3.16
140 141 5.772825 TTTCATTGTTGAGAGTTCCCAAG 57.227 39.130 0.00 0.00 32.27 3.61
141 142 5.509501 GCATTTCATTGTTGAGAGTTCCCAA 60.510 40.000 0.00 0.00 32.27 4.12
142 143 4.022068 GCATTTCATTGTTGAGAGTTCCCA 60.022 41.667 0.00 0.00 32.27 4.37
143 144 4.022068 TGCATTTCATTGTTGAGAGTTCCC 60.022 41.667 0.00 0.00 32.27 3.97
144 145 5.125100 TGCATTTCATTGTTGAGAGTTCC 57.875 39.130 0.00 0.00 32.27 3.62
145 146 6.864685 TCATTGCATTTCATTGTTGAGAGTTC 59.135 34.615 0.00 0.00 32.27 3.01
146 147 6.751157 TCATTGCATTTCATTGTTGAGAGTT 58.249 32.000 0.00 0.00 32.27 3.01
147 148 6.335471 TCATTGCATTTCATTGTTGAGAGT 57.665 33.333 0.00 0.00 32.27 3.24
148 149 6.866770 ACTTCATTGCATTTCATTGTTGAGAG 59.133 34.615 0.00 0.00 32.27 3.20
149 150 6.643360 CACTTCATTGCATTTCATTGTTGAGA 59.357 34.615 0.00 0.00 32.27 3.27
150 151 6.128661 CCACTTCATTGCATTTCATTGTTGAG 60.129 38.462 0.00 0.00 32.27 3.02
151 152 5.697178 CCACTTCATTGCATTTCATTGTTGA 59.303 36.000 0.00 0.00 0.00 3.18
152 153 5.467399 ACCACTTCATTGCATTTCATTGTTG 59.533 36.000 0.00 0.00 0.00 3.33
153 154 5.467399 CACCACTTCATTGCATTTCATTGTT 59.533 36.000 0.00 0.00 0.00 2.83
154 155 4.992319 CACCACTTCATTGCATTTCATTGT 59.008 37.500 0.00 0.00 0.00 2.71
155 156 4.142988 GCACCACTTCATTGCATTTCATTG 60.143 41.667 0.00 0.00 36.22 2.82
156 157 3.998341 GCACCACTTCATTGCATTTCATT 59.002 39.130 0.00 0.00 36.22 2.57
157 158 3.259876 AGCACCACTTCATTGCATTTCAT 59.740 39.130 0.00 0.00 38.81 2.57
158 159 2.629137 AGCACCACTTCATTGCATTTCA 59.371 40.909 0.00 0.00 38.81 2.69
159 160 3.308438 AGCACCACTTCATTGCATTTC 57.692 42.857 0.00 0.00 38.81 2.17
160 161 3.828451 AGTAGCACCACTTCATTGCATTT 59.172 39.130 0.00 0.00 38.81 2.32
161 162 3.424703 AGTAGCACCACTTCATTGCATT 58.575 40.909 0.00 0.00 38.81 3.56
162 163 3.077484 AGTAGCACCACTTCATTGCAT 57.923 42.857 0.00 0.00 38.81 3.96
163 164 2.566833 AGTAGCACCACTTCATTGCA 57.433 45.000 0.00 0.00 38.81 4.08
164 165 3.253188 TGAAAGTAGCACCACTTCATTGC 59.747 43.478 0.00 0.00 37.78 3.56
165 166 5.437289 TTGAAAGTAGCACCACTTCATTG 57.563 39.130 0.00 0.00 37.78 2.82
166 167 5.359576 TGTTTGAAAGTAGCACCACTTCATT 59.640 36.000 0.00 0.00 37.78 2.57
167 168 4.887071 TGTTTGAAAGTAGCACCACTTCAT 59.113 37.500 0.00 0.00 37.78 2.57
168 169 4.095782 GTGTTTGAAAGTAGCACCACTTCA 59.904 41.667 0.00 0.00 37.78 3.02
169 170 4.095782 TGTGTTTGAAAGTAGCACCACTTC 59.904 41.667 0.00 0.00 37.78 3.01
170 171 4.013728 TGTGTTTGAAAGTAGCACCACTT 58.986 39.130 0.00 0.00 40.49 3.16
171 172 3.377172 GTGTGTTTGAAAGTAGCACCACT 59.623 43.478 0.00 0.00 0.00 4.00
172 173 3.377172 AGTGTGTTTGAAAGTAGCACCAC 59.623 43.478 0.00 0.00 0.00 4.16
173 174 3.616219 AGTGTGTTTGAAAGTAGCACCA 58.384 40.909 0.00 0.00 0.00 4.17
174 175 4.573201 TGTAGTGTGTTTGAAAGTAGCACC 59.427 41.667 0.00 0.00 0.00 5.01
175 176 5.728351 TGTAGTGTGTTTGAAAGTAGCAC 57.272 39.130 0.00 0.00 0.00 4.40
176 177 6.935741 AATGTAGTGTGTTTGAAAGTAGCA 57.064 33.333 0.00 0.00 0.00 3.49
177 178 7.193595 ACAAATGTAGTGTGTTTGAAAGTAGC 58.806 34.615 4.31 0.00 36.58 3.58
178 179 9.646336 GTACAAATGTAGTGTGTTTGAAAGTAG 57.354 33.333 4.31 0.00 36.58 2.57
179 180 9.386010 AGTACAAATGTAGTGTGTTTGAAAGTA 57.614 29.630 0.00 0.00 36.58 2.24
180 181 8.276252 AGTACAAATGTAGTGTGTTTGAAAGT 57.724 30.769 0.00 0.00 36.58 2.66
181 182 8.612619 AGAGTACAAATGTAGTGTGTTTGAAAG 58.387 33.333 5.67 0.00 36.58 2.62
182 183 8.500753 AGAGTACAAATGTAGTGTGTTTGAAA 57.499 30.769 5.67 0.00 36.58 2.69
183 184 9.602568 TTAGAGTACAAATGTAGTGTGTTTGAA 57.397 29.630 5.67 0.00 36.58 2.69
184 185 9.602568 TTTAGAGTACAAATGTAGTGTGTTTGA 57.397 29.630 5.67 0.00 36.58 2.69
188 189 9.826574 TCTTTTTAGAGTACAAATGTAGTGTGT 57.173 29.630 5.67 0.00 34.54 3.72
204 205 9.727627 GGAGCAACATCATTATTCTTTTTAGAG 57.272 33.333 0.00 0.00 0.00 2.43
205 206 9.466497 AGGAGCAACATCATTATTCTTTTTAGA 57.534 29.630 0.00 0.00 0.00 2.10
208 209 8.810041 AGAAGGAGCAACATCATTATTCTTTTT 58.190 29.630 0.00 0.00 0.00 1.94
209 210 8.358582 AGAAGGAGCAACATCATTATTCTTTT 57.641 30.769 0.00 0.00 0.00 2.27
210 211 7.833183 AGAGAAGGAGCAACATCATTATTCTTT 59.167 33.333 0.00 0.00 0.00 2.52
211 212 7.344913 AGAGAAGGAGCAACATCATTATTCTT 58.655 34.615 0.00 0.00 0.00 2.52
212 213 6.897986 AGAGAAGGAGCAACATCATTATTCT 58.102 36.000 0.00 0.00 0.00 2.40
213 214 6.991531 AGAGAGAAGGAGCAACATCATTATTC 59.008 38.462 0.00 0.00 0.00 1.75
214 215 6.897986 AGAGAGAAGGAGCAACATCATTATT 58.102 36.000 0.00 0.00 0.00 1.40
215 216 6.099413 TGAGAGAGAAGGAGCAACATCATTAT 59.901 38.462 0.00 0.00 0.00 1.28
216 217 5.423290 TGAGAGAGAAGGAGCAACATCATTA 59.577 40.000 0.00 0.00 0.00 1.90
217 218 4.224594 TGAGAGAGAAGGAGCAACATCATT 59.775 41.667 0.00 0.00 0.00 2.57
218 219 3.773667 TGAGAGAGAAGGAGCAACATCAT 59.226 43.478 0.00 0.00 0.00 2.45
219 220 3.168292 TGAGAGAGAAGGAGCAACATCA 58.832 45.455 0.00 0.00 0.00 3.07
220 221 3.883830 TGAGAGAGAAGGAGCAACATC 57.116 47.619 0.00 0.00 0.00 3.06
221 222 4.840716 AATGAGAGAGAAGGAGCAACAT 57.159 40.909 0.00 0.00 0.00 2.71
222 223 4.630644 AAATGAGAGAGAAGGAGCAACA 57.369 40.909 0.00 0.00 0.00 3.33
223 224 5.956068 AAAAATGAGAGAGAAGGAGCAAC 57.044 39.130 0.00 0.00 0.00 4.17
224 225 6.094603 GCATAAAAATGAGAGAGAAGGAGCAA 59.905 38.462 0.00 0.00 0.00 3.91
225 226 5.587844 GCATAAAAATGAGAGAGAAGGAGCA 59.412 40.000 0.00 0.00 0.00 4.26
226 227 5.008514 GGCATAAAAATGAGAGAGAAGGAGC 59.991 44.000 0.00 0.00 0.00 4.70
227 228 6.355747 AGGCATAAAAATGAGAGAGAAGGAG 58.644 40.000 0.00 0.00 0.00 3.69
228 229 6.319048 AGGCATAAAAATGAGAGAGAAGGA 57.681 37.500 0.00 0.00 0.00 3.36
229 230 7.401955 AAAGGCATAAAAATGAGAGAGAAGG 57.598 36.000 0.00 0.00 0.00 3.46
230 231 9.136952 CAAAAAGGCATAAAAATGAGAGAGAAG 57.863 33.333 0.00 0.00 0.00 2.85
231 232 8.859090 TCAAAAAGGCATAAAAATGAGAGAGAA 58.141 29.630 0.00 0.00 0.00 2.87
232 233 8.408043 TCAAAAAGGCATAAAAATGAGAGAGA 57.592 30.769 0.00 0.00 0.00 3.10
235 236 9.859427 TGTATCAAAAAGGCATAAAAATGAGAG 57.141 29.630 0.00 0.00 0.00 3.20
241 242 9.995003 ACAAGATGTATCAAAAAGGCATAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
242 243 9.995003 AACAAGATGTATCAAAAAGGCATAAAA 57.005 25.926 0.00 0.00 0.00 1.52
243 244 9.995003 AAACAAGATGTATCAAAAAGGCATAAA 57.005 25.926 0.00 0.00 0.00 1.40
244 245 9.995003 AAAACAAGATGTATCAAAAAGGCATAA 57.005 25.926 0.00 0.00 0.00 1.90
245 246 9.421806 CAAAACAAGATGTATCAAAAAGGCATA 57.578 29.630 0.00 0.00 0.00 3.14
246 247 8.149647 TCAAAACAAGATGTATCAAAAAGGCAT 58.850 29.630 0.00 0.00 0.00 4.40
247 248 7.495901 TCAAAACAAGATGTATCAAAAAGGCA 58.504 30.769 0.00 0.00 0.00 4.75
248 249 7.945033 TCAAAACAAGATGTATCAAAAAGGC 57.055 32.000 0.00 0.00 0.00 4.35
249 250 9.695526 TGATCAAAACAAGATGTATCAAAAAGG 57.304 29.630 0.00 0.00 0.00 3.11
277 278 9.253832 TGGCATTATAGAAAAGAGATCCAAAAA 57.746 29.630 0.00 0.00 0.00 1.94
278 279 8.821686 TGGCATTATAGAAAAGAGATCCAAAA 57.178 30.769 0.00 0.00 0.00 2.44
279 280 8.821686 TTGGCATTATAGAAAAGAGATCCAAA 57.178 30.769 0.00 0.00 0.00 3.28
280 281 8.055181 ACTTGGCATTATAGAAAAGAGATCCAA 58.945 33.333 0.00 0.00 0.00 3.53
281 282 7.577303 ACTTGGCATTATAGAAAAGAGATCCA 58.423 34.615 0.00 0.00 0.00 3.41
282 283 7.095439 CGACTTGGCATTATAGAAAAGAGATCC 60.095 40.741 0.00 0.00 0.00 3.36
283 284 7.439655 ACGACTTGGCATTATAGAAAAGAGATC 59.560 37.037 0.00 0.00 0.00 2.75
284 285 7.275920 ACGACTTGGCATTATAGAAAAGAGAT 58.724 34.615 0.00 0.00 0.00 2.75
285 286 6.640518 ACGACTTGGCATTATAGAAAAGAGA 58.359 36.000 0.00 0.00 0.00 3.10
286 287 6.910536 ACGACTTGGCATTATAGAAAAGAG 57.089 37.500 0.00 0.00 0.00 2.85
287 288 6.479001 GCTACGACTTGGCATTATAGAAAAGA 59.521 38.462 0.00 0.00 0.00 2.52
288 289 6.562270 CGCTACGACTTGGCATTATAGAAAAG 60.562 42.308 0.00 0.00 0.00 2.27
289 290 5.233476 CGCTACGACTTGGCATTATAGAAAA 59.767 40.000 0.00 0.00 0.00 2.29
290 291 4.743151 CGCTACGACTTGGCATTATAGAAA 59.257 41.667 0.00 0.00 0.00 2.52
291 292 4.037089 TCGCTACGACTTGGCATTATAGAA 59.963 41.667 0.00 0.00 0.00 2.10
292 293 3.566742 TCGCTACGACTTGGCATTATAGA 59.433 43.478 0.00 0.00 0.00 1.98
293 294 3.897325 TCGCTACGACTTGGCATTATAG 58.103 45.455 0.00 0.00 0.00 1.31
294 295 3.566742 TCTCGCTACGACTTGGCATTATA 59.433 43.478 0.00 0.00 0.00 0.98
295 296 2.361119 TCTCGCTACGACTTGGCATTAT 59.639 45.455 0.00 0.00 0.00 1.28
296 297 1.746787 TCTCGCTACGACTTGGCATTA 59.253 47.619 0.00 0.00 0.00 1.90
297 298 0.530744 TCTCGCTACGACTTGGCATT 59.469 50.000 0.00 0.00 0.00 3.56
298 299 0.530744 TTCTCGCTACGACTTGGCAT 59.469 50.000 0.00 0.00 0.00 4.40
299 300 0.109272 CTTCTCGCTACGACTTGGCA 60.109 55.000 0.00 0.00 0.00 4.92
300 301 0.109226 ACTTCTCGCTACGACTTGGC 60.109 55.000 0.00 0.00 0.00 4.52
301 302 1.618861 CACTTCTCGCTACGACTTGG 58.381 55.000 0.00 0.00 0.00 3.61
302 303 1.199327 TCCACTTCTCGCTACGACTTG 59.801 52.381 0.00 0.00 0.00 3.16
303 304 1.469308 CTCCACTTCTCGCTACGACTT 59.531 52.381 0.00 0.00 0.00 3.01
304 305 1.088306 CTCCACTTCTCGCTACGACT 58.912 55.000 0.00 0.00 0.00 4.18
305 306 0.099082 CCTCCACTTCTCGCTACGAC 59.901 60.000 0.00 0.00 0.00 4.34
306 307 1.654954 GCCTCCACTTCTCGCTACGA 61.655 60.000 0.00 0.00 0.00 3.43
307 308 1.226717 GCCTCCACTTCTCGCTACG 60.227 63.158 0.00 0.00 0.00 3.51
308 309 0.179124 CTGCCTCCACTTCTCGCTAC 60.179 60.000 0.00 0.00 0.00 3.58
309 310 1.949847 GCTGCCTCCACTTCTCGCTA 61.950 60.000 0.00 0.00 0.00 4.26
310 311 2.977178 CTGCCTCCACTTCTCGCT 59.023 61.111 0.00 0.00 0.00 4.93
311 312 2.817396 GCTGCCTCCACTTCTCGC 60.817 66.667 0.00 0.00 0.00 5.03
312 313 1.447489 CTGCTGCCTCCACTTCTCG 60.447 63.158 0.00 0.00 0.00 4.04
313 314 1.078567 CCTGCTGCCTCCACTTCTC 60.079 63.158 0.00 0.00 0.00 2.87
314 315 1.130054 TTCCTGCTGCCTCCACTTCT 61.130 55.000 0.00 0.00 0.00 2.85
315 316 0.676151 CTTCCTGCTGCCTCCACTTC 60.676 60.000 0.00 0.00 0.00 3.01
316 317 1.130054 TCTTCCTGCTGCCTCCACTT 61.130 55.000 0.00 0.00 0.00 3.16
317 318 1.537397 TCTTCCTGCTGCCTCCACT 60.537 57.895 0.00 0.00 0.00 4.00
318 319 1.376553 GTCTTCCTGCTGCCTCCAC 60.377 63.158 0.00 0.00 0.00 4.02
319 320 1.834856 CTGTCTTCCTGCTGCCTCCA 61.835 60.000 0.00 0.00 0.00 3.86
320 321 1.078567 CTGTCTTCCTGCTGCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
321 322 1.744741 GCTGTCTTCCTGCTGCCTC 60.745 63.158 0.00 0.00 35.32 4.70
322 323 2.350514 GCTGTCTTCCTGCTGCCT 59.649 61.111 0.00 0.00 35.32 4.75
323 324 3.123620 CGCTGTCTTCCTGCTGCC 61.124 66.667 0.00 0.00 35.98 4.85
324 325 3.123620 CCGCTGTCTTCCTGCTGC 61.124 66.667 0.00 0.00 35.98 5.25
325 326 3.123620 GCCGCTGTCTTCCTGCTG 61.124 66.667 0.00 0.00 35.98 4.41
326 327 4.749310 CGCCGCTGTCTTCCTGCT 62.749 66.667 0.00 0.00 35.98 4.24
331 332 4.077188 GTGTGCGCCGCTGTCTTC 62.077 66.667 11.67 0.00 0.00 2.87
361 362 4.847444 GAAGAGGGAGCGGCTGCC 62.847 72.222 30.65 30.65 44.31 4.85
362 363 3.731653 GAGAAGAGGGAGCGGCTGC 62.732 68.421 13.60 13.60 43.24 5.25
363 364 2.498726 GAGAAGAGGGAGCGGCTG 59.501 66.667 7.50 0.00 0.00 4.85
364 365 2.762043 GGAGAAGAGGGAGCGGCT 60.762 66.667 0.00 0.00 0.00 5.52
365 366 2.762043 AGGAGAAGAGGGAGCGGC 60.762 66.667 0.00 0.00 0.00 6.53
366 367 0.758685 ATGAGGAGAAGAGGGAGCGG 60.759 60.000 0.00 0.00 0.00 5.52
367 368 0.388659 CATGAGGAGAAGAGGGAGCG 59.611 60.000 0.00 0.00 0.00 5.03
368 369 0.106521 GCATGAGGAGAAGAGGGAGC 59.893 60.000 0.00 0.00 0.00 4.70
369 370 0.758123 GGCATGAGGAGAAGAGGGAG 59.242 60.000 0.00 0.00 0.00 4.30
370 371 0.043183 TGGCATGAGGAGAAGAGGGA 59.957 55.000 0.00 0.00 0.00 4.20
371 372 0.914644 TTGGCATGAGGAGAAGAGGG 59.085 55.000 0.00 0.00 0.00 4.30
372 373 1.558756 ACTTGGCATGAGGAGAAGAGG 59.441 52.381 7.45 0.00 0.00 3.69
373 374 2.738000 CGACTTGGCATGAGGAGAAGAG 60.738 54.545 7.45 0.00 0.00 2.85
374 375 1.205655 CGACTTGGCATGAGGAGAAGA 59.794 52.381 7.45 0.00 0.00 2.87
375 376 1.066573 ACGACTTGGCATGAGGAGAAG 60.067 52.381 7.45 0.00 0.00 2.85
376 377 0.976641 ACGACTTGGCATGAGGAGAA 59.023 50.000 7.45 0.00 0.00 2.87
377 378 1.751351 CTACGACTTGGCATGAGGAGA 59.249 52.381 7.45 0.00 0.00 3.71
378 379 1.804372 GCTACGACTTGGCATGAGGAG 60.804 57.143 7.45 7.73 0.00 3.69
379 380 0.175760 GCTACGACTTGGCATGAGGA 59.824 55.000 7.45 0.00 0.00 3.71
380 381 1.148157 CGCTACGACTTGGCATGAGG 61.148 60.000 7.45 1.14 0.00 3.86
381 382 0.179137 TCGCTACGACTTGGCATGAG 60.179 55.000 7.45 0.00 0.00 2.90
382 383 0.179137 CTCGCTACGACTTGGCATGA 60.179 55.000 7.45 0.00 0.00 3.07
383 384 0.179137 TCTCGCTACGACTTGGCATG 60.179 55.000 0.00 0.00 0.00 4.06
390 391 1.088306 CTCCACTTCTCGCTACGACT 58.912 55.000 0.00 0.00 0.00 4.18
396 397 3.764466 CCGCCTCCACTTCTCGCT 61.764 66.667 0.00 0.00 0.00 4.93
412 413 2.617274 GCACCGTTGTCTTCCTGCC 61.617 63.158 0.00 0.00 0.00 4.85
415 416 0.814010 GTGTGCACCGTTGTCTTCCT 60.814 55.000 15.69 0.00 0.00 3.36
453 455 4.150454 AGAGGAGGAGGGGGAGCG 62.150 72.222 0.00 0.00 0.00 5.03
480 493 0.179150 CGAAGTTCGGCAGAGGAGAG 60.179 60.000 17.61 0.00 36.00 3.20
490 503 1.801913 CACGAGGAGCGAAGTTCGG 60.802 63.158 25.55 10.92 44.57 4.30
506 519 2.234300 TTGTCGTTGTTCTCCTCCAC 57.766 50.000 0.00 0.00 0.00 4.02
508 521 2.544267 CTGTTTGTCGTTGTTCTCCTCC 59.456 50.000 0.00 0.00 0.00 4.30
524 542 1.526887 CGAATCGTGCAGTCACTGTTT 59.473 47.619 6.68 0.00 40.99 2.83
580 598 8.823220 AATATACAGCATAACCACTTCCTTTT 57.177 30.769 0.00 0.00 0.00 2.27
586 604 4.447724 CGCGAATATACAGCATAACCACTT 59.552 41.667 0.00 0.00 0.00 3.16
594 614 0.319555 ACCGCGCGAATATACAGCAT 60.320 50.000 34.63 0.00 0.00 3.79
595 615 0.937699 GACCGCGCGAATATACAGCA 60.938 55.000 34.63 0.00 0.00 4.41
597 617 1.334992 CGGACCGCGCGAATATACAG 61.335 60.000 34.63 14.59 0.00 2.74
603 623 2.354305 GTATCGGACCGCGCGAAT 60.354 61.111 34.63 19.92 0.00 3.34
610 630 0.317103 CTTGCTCTCGTATCGGACCG 60.317 60.000 7.84 7.84 0.00 4.79
615 635 1.135046 CCATGCTTGCTCTCGTATCG 58.865 55.000 0.00 0.00 0.00 2.92
622 642 2.239150 AGATTCTGACCATGCTTGCTCT 59.761 45.455 0.00 0.00 0.00 4.09
627 647 4.885907 CCATGTTAGATTCTGACCATGCTT 59.114 41.667 6.17 0.00 0.00 3.91
629 649 3.004106 GCCATGTTAGATTCTGACCATGC 59.996 47.826 6.17 2.76 0.00 4.06
634 654 2.213499 CCGGCCATGTTAGATTCTGAC 58.787 52.381 2.24 1.77 0.00 3.51
644 664 4.360405 GGGTCCACCGGCCATGTT 62.360 66.667 0.00 0.00 36.71 2.71
663 683 2.576287 GATTTGCACGAATCGCCGCA 62.576 55.000 14.93 14.93 36.94 5.69
698 718 9.070149 GTTTAAGAGATTGAAGACAAATGATGC 57.930 33.333 0.00 0.00 39.54 3.91
706 726 7.726216 TGTCTGAGTTTAAGAGATTGAAGACA 58.274 34.615 0.00 0.00 38.30 3.41
712 732 7.895975 TGTGATGTCTGAGTTTAAGAGATTG 57.104 36.000 0.00 0.00 28.46 2.67
720 740 6.871492 TCGCTAAAATGTGATGTCTGAGTTTA 59.129 34.615 0.00 0.00 0.00 2.01
724 744 5.980698 ATCGCTAAAATGTGATGTCTGAG 57.019 39.130 0.00 0.00 36.04 3.35
731 751 6.861065 ATTACGGAATCGCTAAAATGTGAT 57.139 33.333 0.00 0.00 40.63 3.06
743 764 5.220340 GCGTGGGATAAATATTACGGAATCG 60.220 44.000 0.00 0.00 43.02 3.34
762 783 1.065358 ATTTTACGAGTGTCGCGTGG 58.935 50.000 5.77 0.00 45.12 4.94
767 788 5.575606 ACAAGATGGTATTTTACGAGTGTCG 59.424 40.000 0.00 0.00 46.93 4.35
775 796 4.947388 TGGGAGCACAAGATGGTATTTTAC 59.053 41.667 0.00 0.00 39.82 2.01
788 809 2.805295 CGTCTAGTGTTTGGGAGCACAA 60.805 50.000 0.00 0.00 39.22 3.33
894 915 1.243902 GGATTTGGTTTGCCTCGTGA 58.756 50.000 0.00 0.00 35.27 4.35
1038 1072 3.115892 GCGGGCGTCACGATGAAA 61.116 61.111 0.00 0.00 0.00 2.69
1048 1082 3.532155 GAGATGAGGAGCGGGCGT 61.532 66.667 0.00 0.00 0.00 5.68
1305 1339 0.318120 AAACATGCAAAAGCTCGGGG 59.682 50.000 0.00 0.00 0.00 5.73
1329 1363 4.025396 TGCTAATACTACTACGACTGCGAC 60.025 45.833 0.00 0.00 41.64 5.19
1336 1370 3.881089 TGCTGCTGCTAATACTACTACGA 59.119 43.478 17.00 0.00 40.48 3.43
1417 1454 2.040544 CACTAAGCCCGGCAACAGG 61.041 63.158 13.15 0.00 37.12 4.00
1418 1455 2.690778 GCACTAAGCCCGGCAACAG 61.691 63.158 13.15 7.74 37.23 3.16
1419 1456 2.671619 GCACTAAGCCCGGCAACA 60.672 61.111 13.15 0.00 37.23 3.33
1438 1475 9.565090 ACACACACATATATCTTCAATTAGCAT 57.435 29.630 0.00 0.00 0.00 3.79
1445 1482 9.719355 AAGTTACACACACACATATATCTTCAA 57.281 29.630 0.00 0.00 0.00 2.69
1476 1519 5.294552 GGAAATTATACAGACACCAGAGCAC 59.705 44.000 0.00 0.00 0.00 4.40
1611 1654 4.344968 TCGCTGATCTCCAAATCCTTGATA 59.655 41.667 0.00 0.00 34.14 2.15
1708 1751 9.360093 CTGAAGACAGTCAAACTAATAGGTAAG 57.640 37.037 2.66 0.00 39.11 2.34
1714 1757 7.540474 AGACCTGAAGACAGTCAAACTAATA 57.460 36.000 2.66 0.00 42.05 0.98
1859 1902 3.062234 GCTGACATAAGTGGTCGTTAAGC 59.938 47.826 0.00 0.00 38.10 3.09
1907 1951 6.423302 CAGATATACAGTTCAAGTGCAGATCC 59.577 42.308 0.00 0.00 0.00 3.36
1923 1967 9.613428 ACAGCACTTTTAAATAGCAGATATACA 57.387 29.630 8.95 0.00 0.00 2.29
2035 2080 5.820131 TCTTCAAACTGTACAGCACAAATG 58.180 37.500 22.90 12.12 36.48 2.32
2098 2143 5.301551 TGCAGACATTGTAACATTGACCTTT 59.698 36.000 0.00 0.00 0.00 3.11
2470 2516 9.073475 AGTCTGTTTACCATTATTAGTGCAAAA 57.927 29.630 0.00 0.00 0.00 2.44
2765 2843 7.968405 ACAACAGTGTCAAGTTCTTTTATTCAC 59.032 33.333 0.00 0.00 29.49 3.18
2767 2845 8.911247 AACAACAGTGTCAAGTTCTTTTATTC 57.089 30.769 0.00 0.00 36.80 1.75
2801 2880 2.943036 TAGTCAAGTTCGCCCCTTTT 57.057 45.000 0.00 0.00 0.00 2.27
2802 2881 2.572104 AGATAGTCAAGTTCGCCCCTTT 59.428 45.455 0.00 0.00 0.00 3.11
2939 3018 3.050619 GGCGTGTTATACTTCGAGATGG 58.949 50.000 0.00 0.00 0.00 3.51
2961 3040 0.320374 CGGAGCTACCTGGTGTTTCA 59.680 55.000 10.23 0.00 36.31 2.69
3119 3198 4.013267 ACAGAGACAAGTCAATGGAAGG 57.987 45.455 2.72 0.00 0.00 3.46
3243 3322 3.402628 ACGTATTTGTCTTGCCTGAGT 57.597 42.857 0.00 0.00 0.00 3.41
3278 3357 5.130145 AGCTATCCAAGAGAAATGTGCTACT 59.870 40.000 0.00 0.00 0.00 2.57
3629 3715 9.965902 ATTCTGTTACTTCTGATTACCTTCAAT 57.034 29.630 0.00 0.00 0.00 2.57
3749 3866 5.681105 CACAACATTAACGAGAAAGTGTTGG 59.319 40.000 17.11 5.86 46.34 3.77
3751 3868 6.431198 ACACAACATTAACGAGAAAGTGTT 57.569 33.333 0.00 0.00 34.38 3.32
3752 3869 6.431198 AACACAACATTAACGAGAAAGTGT 57.569 33.333 0.00 0.00 39.13 3.55
3753 3870 8.829514 TTTAACACAACATTAACGAGAAAGTG 57.170 30.769 0.00 0.00 0.00 3.16
3757 3874 9.790389 ACAATTTTAACACAACATTAACGAGAA 57.210 25.926 0.00 0.00 0.00 2.87
3852 3969 0.820871 ACTCCTCGTCTGAATCTGGC 59.179 55.000 0.00 0.00 0.00 4.85
3864 3981 1.433534 GGTGCAAGAAGAACTCCTCG 58.566 55.000 0.00 0.00 0.00 4.63
3965 4082 4.391216 GGACTCTGTGAATGATGAACTGTG 59.609 45.833 0.00 0.00 0.00 3.66
4109 4227 4.291249 TCCCAGTGCCCTTTTCTAATACTT 59.709 41.667 0.00 0.00 0.00 2.24
4176 4294 7.885009 ATTAGTTTACAGAGGGAGTACTCTC 57.115 40.000 21.88 18.89 45.71 3.20
4183 4301 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
4184 4302 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
4219 4337 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4226 4344 9.900710 CACTAATATAAGAGCGTTTAGATCACT 57.099 33.333 0.00 0.00 37.82 3.41
4227 4345 9.894783 TCACTAATATAAGAGCGTTTAGATCAC 57.105 33.333 0.00 0.00 37.82 3.06
4236 4354 9.680315 GTGTTTAGATCACTAATATAAGAGCGT 57.320 33.333 0.00 0.00 38.23 5.07
4237 4355 9.900710 AGTGTTTAGATCACTAATATAAGAGCG 57.099 33.333 0.00 0.00 43.17 5.03
4257 4375 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
4258 4376 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
4259 4377 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
4260 4378 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
4261 4379 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
4262 4380 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4263 4381 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
4264 4382 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4265 4383 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
4267 4385 9.294614 CTAAGTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
4268 4386 8.494433 TCTAAGTACTCCCTCCGTAAACTAATA 58.506 37.037 0.00 0.00 0.00 0.98
4269 4387 7.349598 TCTAAGTACTCCCTCCGTAAACTAAT 58.650 38.462 0.00 0.00 0.00 1.73
4270 4388 6.721318 TCTAAGTACTCCCTCCGTAAACTAA 58.279 40.000 0.00 0.00 0.00 2.24
4271 4389 6.313519 TCTAAGTACTCCCTCCGTAAACTA 57.686 41.667 0.00 0.00 0.00 2.24
4272 4390 5.184892 TCTAAGTACTCCCTCCGTAAACT 57.815 43.478 0.00 0.00 0.00 2.66
4273 4391 5.183904 TGTTCTAAGTACTCCCTCCGTAAAC 59.816 44.000 0.00 0.00 0.00 2.01
4274 4392 5.324409 TGTTCTAAGTACTCCCTCCGTAAA 58.676 41.667 0.00 0.00 0.00 2.01
4275 4393 4.922206 TGTTCTAAGTACTCCCTCCGTAA 58.078 43.478 0.00 0.00 0.00 3.18
4276 4394 4.574674 TGTTCTAAGTACTCCCTCCGTA 57.425 45.455 0.00 0.00 0.00 4.02
4277 4395 3.446442 TGTTCTAAGTACTCCCTCCGT 57.554 47.619 0.00 0.00 0.00 4.69
4278 4396 4.796038 TTTGTTCTAAGTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
4319 4440 0.818296 CTTGAGCGCTGTAGGGTAGT 59.182 55.000 18.48 0.00 0.00 2.73
4344 4465 0.103208 CACGCCAGTCCTCCAGATAC 59.897 60.000 0.00 0.00 0.00 2.24
4388 4509 2.666190 GTGAAGACAGCAGGCGCA 60.666 61.111 10.83 0.00 42.27 6.09
4452 4573 0.521735 GGTCCATTCGTCCTGCAAAC 59.478 55.000 0.00 0.00 0.00 2.93
4480 4601 6.260050 CAGGTACATCGCCATATTGTACTTTT 59.740 38.462 12.23 0.58 43.25 2.27
4489 4610 3.641436 TGTCTTCAGGTACATCGCCATAT 59.359 43.478 0.00 0.00 0.00 1.78
4695 4816 4.622740 GCATTTTAGGTCTTGCATGTGTTC 59.377 41.667 0.00 0.00 35.22 3.18
4725 4846 3.605743 GCTATCTGCAAAGCATCAGAC 57.394 47.619 9.78 0.00 41.53 3.51
4877 5000 6.488715 AGAAACTCCTTGAGCCTATTGAATT 58.511 36.000 0.00 0.00 32.04 2.17
5062 5185 6.541086 GCATAGTCTGAATTCAACTGAAGTG 58.459 40.000 22.68 17.89 37.48 3.16
5128 5251 6.318900 ACCCTTGTTTTCTTTGAGTAGTTCTG 59.681 38.462 0.00 0.00 0.00 3.02
5279 5409 2.048877 CTTGGCAAAGGCGGCTTG 60.049 61.111 26.23 18.98 42.47 4.01
5574 5705 0.179004 TTTGCAGGGATCAACACGGT 60.179 50.000 0.00 0.00 0.00 4.83
5728 5861 1.691434 GGACTTGGAAATTGCCACCAA 59.309 47.619 3.97 5.67 40.68 3.67
5766 5900 0.729116 CCATGTCCACGATGTGCTTC 59.271 55.000 0.00 0.00 31.34 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.