Multiple sequence alignment - TraesCS3D01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G286600 chr3D 100.000 3171 0 0 1 3171 395640840 395644010 0.000000e+00 5856
1 TraesCS3D01G286600 chr3D 87.879 165 13 4 620 783 540547189 540547347 1.500000e-43 187
2 TraesCS3D01G286600 chr3D 86.391 169 13 5 621 783 279250187 279250023 3.250000e-40 176
3 TraesCS3D01G286600 chr3D 84.574 188 14 8 621 797 443372981 443373164 4.210000e-39 172
4 TraesCS3D01G286600 chr3A 95.257 1982 69 11 791 2750 515282931 515284909 0.000000e+00 3116
5 TraesCS3D01G286600 chr3A 94.758 1984 78 5 791 2750 515722907 515724888 0.000000e+00 3064
6 TraesCS3D01G286600 chr3A 91.369 336 22 4 2746 3075 515724927 515725261 1.340000e-123 453
7 TraesCS3D01G286600 chr3A 88.554 166 13 2 2746 2905 515284948 515285113 2.500000e-46 196
8 TraesCS3D01G286600 chr3A 85.792 183 12 4 621 794 264047580 264047757 6.990000e-42 182
9 TraesCS3D01G286600 chr3A 80.292 274 24 11 2904 3171 515285261 515285510 2.510000e-41 180
10 TraesCS3D01G286600 chr3A 92.157 102 5 1 3073 3171 515725317 515725418 1.190000e-29 141
11 TraesCS3D01G286600 chr3B 91.842 2280 115 30 785 3013 520445706 520447965 0.000000e+00 3114
12 TraesCS3D01G286600 chr3B 92.477 1954 92 12 819 2750 520370437 520372357 0.000000e+00 2743
13 TraesCS3D01G286600 chr3B 88.690 336 16 7 2746 3075 520372396 520372715 1.070000e-104 390
14 TraesCS3D01G286600 chr3B 84.559 272 41 1 93 364 500306176 500305906 5.210000e-68 268
15 TraesCS3D01G286600 chr3B 83.883 273 41 3 93 364 502811398 502811668 1.130000e-64 257
16 TraesCS3D01G286600 chr3B 85.075 201 12 7 621 808 225179962 225180157 4.180000e-44 189
17 TraesCS3D01G286600 chr3B 85.629 167 14 4 620 780 131498152 131498314 1.960000e-37 167
18 TraesCS3D01G286600 chr3B 86.869 99 7 4 3073 3167 520372762 520372858 4.330000e-19 106
19 TraesCS3D01G286600 chr7A 86.142 267 37 0 97 363 307960185 307959919 4.000000e-74 289
20 TraesCS3D01G286600 chr7A 85.662 272 38 1 93 364 619577508 619577238 5.180000e-73 285
21 TraesCS3D01G286600 chr7D 86.142 267 36 1 97 363 274697723 274697458 1.440000e-73 287
22 TraesCS3D01G286600 chr2B 85.294 272 39 1 93 364 784782147 784782417 2.410000e-71 279
23 TraesCS3D01G286600 chr6A 84.926 272 41 0 93 364 604571840 604572111 3.120000e-70 276
24 TraesCS3D01G286600 chr6A 85.128 195 15 3 620 804 105042076 105041886 1.500000e-43 187
25 TraesCS3D01G286600 chr7B 84.926 272 40 1 93 364 337593415 337593685 1.120000e-69 274
26 TraesCS3D01G286600 chr5B 84.559 272 41 1 93 364 375130836 375130566 5.210000e-68 268
27 TraesCS3D01G286600 chr5B 84.878 205 14 6 621 813 521152676 521152477 1.160000e-44 191
28 TraesCS3D01G286600 chr5B 87.349 166 14 4 620 783 159524920 159524760 1.940000e-42 183
29 TraesCS3D01G286600 chrUn 87.912 182 6 7 621 792 50991762 50991937 1.930000e-47 200
30 TraesCS3D01G286600 chr1B 86.096 187 11 5 617 792 519817975 519817793 1.500000e-43 187
31 TraesCS3D01G286600 chr1B 87.117 163 17 1 618 780 426854632 426854790 6.990000e-42 182
32 TraesCS3D01G286600 chr6B 85.946 185 13 4 617 792 711383849 711383669 5.400000e-43 185
33 TraesCS3D01G286600 chr5D 86.503 163 16 2 621 781 352933444 352933602 1.170000e-39 174
34 TraesCS3D01G286600 chr5D 86.957 161 13 5 621 780 421845810 421845963 1.170000e-39 174
35 TraesCS3D01G286600 chr2D 86.420 162 14 3 620 781 616431600 616431447 1.510000e-38 171
36 TraesCS3D01G286600 chr4D 84.916 179 12 5 627 795 416867834 416867661 1.960000e-37 167
37 TraesCS3D01G286600 chr4B 85.542 166 17 2 621 783 233524610 233524449 1.960000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G286600 chr3D 395640840 395644010 3170 False 5856.000000 5856 100.000000 1 3171 1 chr3D.!!$F1 3170
1 TraesCS3D01G286600 chr3A 515722907 515725418 2511 False 1219.333333 3064 92.761333 791 3171 3 chr3A.!!$F3 2380
2 TraesCS3D01G286600 chr3A 515282931 515285510 2579 False 1164.000000 3116 88.034333 791 3171 3 chr3A.!!$F2 2380
3 TraesCS3D01G286600 chr3B 520445706 520447965 2259 False 3114.000000 3114 91.842000 785 3013 1 chr3B.!!$F4 2228
4 TraesCS3D01G286600 chr3B 520370437 520372858 2421 False 1079.666667 2743 89.345333 819 3167 3 chr3B.!!$F5 2348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 580 0.040058 ATGCCACTGCTTGATTGGGA 59.96 50.0 0.0 0.0 38.71 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2576 2580 0.470833 AGGAGATGTAGGGCGCTGAT 60.471 55.0 14.51 5.16 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.060000 TGCTGGCATGAGCAGCAC 61.060 61.111 10.10 0.00 44.16 4.40
18 19 3.060000 GCTGGCATGAGCAGCACA 61.060 61.111 6.98 0.00 44.61 4.57
19 20 3.052620 GCTGGCATGAGCAGCACAG 62.053 63.158 6.98 0.00 44.61 3.66
20 21 2.360726 TGGCATGAGCAGCACAGG 60.361 61.111 0.00 0.00 44.61 4.00
21 22 2.045634 GGCATGAGCAGCACAGGA 60.046 61.111 8.79 0.00 44.61 3.86
22 23 2.404995 GGCATGAGCAGCACAGGAC 61.405 63.158 8.79 0.84 44.61 3.85
23 24 2.747822 GCATGAGCAGCACAGGACG 61.748 63.158 8.79 0.00 41.58 4.79
24 25 1.375140 CATGAGCAGCACAGGACGT 60.375 57.895 0.00 0.00 0.00 4.34
25 26 1.079543 ATGAGCAGCACAGGACGTC 60.080 57.895 7.13 7.13 0.00 4.34
26 27 2.807045 GAGCAGCACAGGACGTCG 60.807 66.667 9.92 0.00 0.00 5.12
29 30 2.661537 CAGCACAGGACGTCGCAA 60.662 61.111 9.92 0.00 0.00 4.85
30 31 2.029288 CAGCACAGGACGTCGCAAT 61.029 57.895 9.92 0.00 0.00 3.56
31 32 1.738099 AGCACAGGACGTCGCAATC 60.738 57.895 9.92 0.00 0.00 2.67
32 33 1.738099 GCACAGGACGTCGCAATCT 60.738 57.895 9.92 0.00 0.00 2.40
33 34 1.291877 GCACAGGACGTCGCAATCTT 61.292 55.000 9.92 0.00 0.00 2.40
34 35 1.148310 CACAGGACGTCGCAATCTTT 58.852 50.000 9.92 0.00 0.00 2.52
35 36 1.531149 CACAGGACGTCGCAATCTTTT 59.469 47.619 9.92 0.00 0.00 2.27
36 37 1.798813 ACAGGACGTCGCAATCTTTTC 59.201 47.619 9.92 0.00 0.00 2.29
37 38 1.798223 CAGGACGTCGCAATCTTTTCA 59.202 47.619 9.92 0.00 0.00 2.69
38 39 2.416547 CAGGACGTCGCAATCTTTTCAT 59.583 45.455 9.92 0.00 0.00 2.57
39 40 3.616821 CAGGACGTCGCAATCTTTTCATA 59.383 43.478 9.92 0.00 0.00 2.15
40 41 3.617263 AGGACGTCGCAATCTTTTCATAC 59.383 43.478 9.92 0.00 0.00 2.39
41 42 3.369756 GGACGTCGCAATCTTTTCATACA 59.630 43.478 9.92 0.00 0.00 2.29
42 43 4.492570 GGACGTCGCAATCTTTTCATACAG 60.493 45.833 9.92 0.00 0.00 2.74
43 44 3.370978 ACGTCGCAATCTTTTCATACAGG 59.629 43.478 0.00 0.00 0.00 4.00
44 45 3.616821 CGTCGCAATCTTTTCATACAGGA 59.383 43.478 0.00 0.00 0.00 3.86
45 46 4.092821 CGTCGCAATCTTTTCATACAGGAA 59.907 41.667 0.00 0.00 0.00 3.36
46 47 5.390461 CGTCGCAATCTTTTCATACAGGAAA 60.390 40.000 0.00 0.00 35.11 3.13
47 48 6.378582 GTCGCAATCTTTTCATACAGGAAAA 58.621 36.000 2.27 2.27 42.68 2.29
48 49 6.861055 GTCGCAATCTTTTCATACAGGAAAAA 59.139 34.615 3.71 0.00 43.82 1.94
49 50 7.542130 GTCGCAATCTTTTCATACAGGAAAAAT 59.458 33.333 3.71 0.00 43.82 1.82
50 51 8.087750 TCGCAATCTTTTCATACAGGAAAAATT 58.912 29.630 3.71 4.42 43.82 1.82
51 52 8.375465 CGCAATCTTTTCATACAGGAAAAATTC 58.625 33.333 3.71 0.00 43.82 2.17
52 53 8.375465 GCAATCTTTTCATACAGGAAAAATTCG 58.625 33.333 3.71 0.00 43.82 3.34
53 54 8.863049 CAATCTTTTCATACAGGAAAAATTCGG 58.137 33.333 3.71 0.00 43.82 4.30
54 55 6.386654 TCTTTTCATACAGGAAAAATTCGGC 58.613 36.000 3.71 0.00 43.82 5.54
55 56 5.713792 TTTCATACAGGAAAAATTCGGCA 57.286 34.783 0.00 0.00 34.05 5.69
56 57 4.695217 TCATACAGGAAAAATTCGGCAC 57.305 40.909 0.00 0.00 0.00 5.01
57 58 4.331968 TCATACAGGAAAAATTCGGCACT 58.668 39.130 0.00 0.00 0.00 4.40
58 59 4.394920 TCATACAGGAAAAATTCGGCACTC 59.605 41.667 0.00 0.00 0.00 3.51
59 60 2.863809 ACAGGAAAAATTCGGCACTCT 58.136 42.857 0.00 0.00 0.00 3.24
60 61 4.015872 ACAGGAAAAATTCGGCACTCTA 57.984 40.909 0.00 0.00 0.00 2.43
61 62 4.003648 ACAGGAAAAATTCGGCACTCTAG 58.996 43.478 0.00 0.00 0.00 2.43
62 63 4.253685 CAGGAAAAATTCGGCACTCTAGA 58.746 43.478 0.00 0.00 0.00 2.43
63 64 4.331168 CAGGAAAAATTCGGCACTCTAGAG 59.669 45.833 18.49 18.49 0.00 2.43
64 65 4.223032 AGGAAAAATTCGGCACTCTAGAGA 59.777 41.667 26.57 2.68 0.00 3.10
65 66 4.935808 GGAAAAATTCGGCACTCTAGAGAA 59.064 41.667 26.57 10.14 0.00 2.87
66 67 5.163844 GGAAAAATTCGGCACTCTAGAGAAC 60.164 44.000 26.57 16.12 0.00 3.01
67 68 2.853731 ATTCGGCACTCTAGAGAACG 57.146 50.000 26.57 23.16 0.00 3.95
68 69 1.817357 TTCGGCACTCTAGAGAACGA 58.183 50.000 26.57 24.77 32.94 3.85
69 70 1.085091 TCGGCACTCTAGAGAACGAC 58.915 55.000 26.57 14.43 31.17 4.34
70 71 0.099082 CGGCACTCTAGAGAACGACC 59.901 60.000 26.57 16.42 0.00 4.79
71 72 1.465794 GGCACTCTAGAGAACGACCT 58.534 55.000 26.57 0.00 0.00 3.85
72 73 1.819903 GGCACTCTAGAGAACGACCTT 59.180 52.381 26.57 0.00 0.00 3.50
73 74 2.416162 GGCACTCTAGAGAACGACCTTG 60.416 54.545 26.57 11.99 0.00 3.61
74 75 2.229302 GCACTCTAGAGAACGACCTTGT 59.771 50.000 26.57 0.00 0.00 3.16
75 76 3.827625 CACTCTAGAGAACGACCTTGTG 58.172 50.000 26.57 6.88 0.00 3.33
76 77 3.502595 CACTCTAGAGAACGACCTTGTGA 59.497 47.826 26.57 0.00 0.00 3.58
77 78 3.502979 ACTCTAGAGAACGACCTTGTGAC 59.497 47.826 26.57 0.00 0.00 3.67
78 79 2.818432 TCTAGAGAACGACCTTGTGACC 59.182 50.000 0.00 0.00 0.00 4.02
79 80 1.410004 AGAGAACGACCTTGTGACCA 58.590 50.000 0.00 0.00 0.00 4.02
80 81 1.971357 AGAGAACGACCTTGTGACCAT 59.029 47.619 0.00 0.00 0.00 3.55
81 82 3.162666 AGAGAACGACCTTGTGACCATA 58.837 45.455 0.00 0.00 0.00 2.74
82 83 3.576982 AGAGAACGACCTTGTGACCATAA 59.423 43.478 0.00 0.00 0.00 1.90
83 84 3.660865 AGAACGACCTTGTGACCATAAC 58.339 45.455 0.00 0.00 0.00 1.89
84 85 3.070446 AGAACGACCTTGTGACCATAACA 59.930 43.478 0.00 0.00 0.00 2.41
85 86 3.695830 ACGACCTTGTGACCATAACAT 57.304 42.857 0.00 0.00 0.00 2.71
86 87 4.015872 ACGACCTTGTGACCATAACATT 57.984 40.909 0.00 0.00 0.00 2.71
87 88 5.155278 ACGACCTTGTGACCATAACATTA 57.845 39.130 0.00 0.00 0.00 1.90
88 89 5.553123 ACGACCTTGTGACCATAACATTAA 58.447 37.500 0.00 0.00 0.00 1.40
89 90 5.410439 ACGACCTTGTGACCATAACATTAAC 59.590 40.000 0.00 0.00 0.00 2.01
90 91 5.642063 CGACCTTGTGACCATAACATTAACT 59.358 40.000 0.00 0.00 0.00 2.24
91 92 6.183360 CGACCTTGTGACCATAACATTAACTC 60.183 42.308 0.00 0.00 0.00 3.01
92 93 6.779860 ACCTTGTGACCATAACATTAACTCT 58.220 36.000 0.00 0.00 0.00 3.24
93 94 7.231467 ACCTTGTGACCATAACATTAACTCTT 58.769 34.615 0.00 0.00 0.00 2.85
94 95 7.174946 ACCTTGTGACCATAACATTAACTCTTG 59.825 37.037 0.00 0.00 0.00 3.02
95 96 7.362056 CCTTGTGACCATAACATTAACTCTTGG 60.362 40.741 0.00 0.00 0.00 3.61
96 97 6.539173 TGTGACCATAACATTAACTCTTGGT 58.461 36.000 0.00 0.00 38.64 3.67
97 98 7.001674 TGTGACCATAACATTAACTCTTGGTT 58.998 34.615 0.00 0.00 41.54 3.67
98 99 7.174253 TGTGACCATAACATTAACTCTTGGTTC 59.826 37.037 0.00 0.00 39.17 3.62
99 100 7.174253 GTGACCATAACATTAACTCTTGGTTCA 59.826 37.037 0.00 0.00 39.17 3.18
100 101 7.888021 TGACCATAACATTAACTCTTGGTTCAT 59.112 33.333 0.00 0.00 39.17 2.57
101 102 9.391006 GACCATAACATTAACTCTTGGTTCATA 57.609 33.333 0.00 0.00 39.17 2.15
102 103 9.396022 ACCATAACATTAACTCTTGGTTCATAG 57.604 33.333 0.00 0.00 39.17 2.23
103 104 8.840321 CCATAACATTAACTCTTGGTTCATAGG 58.160 37.037 0.00 0.00 39.17 2.57
104 105 8.840321 CATAACATTAACTCTTGGTTCATAGGG 58.160 37.037 0.00 0.00 39.17 3.53
105 106 6.388619 ACATTAACTCTTGGTTCATAGGGT 57.611 37.500 0.00 0.00 39.17 4.34
106 107 7.504926 ACATTAACTCTTGGTTCATAGGGTA 57.495 36.000 0.00 0.00 39.17 3.69
107 108 7.924541 ACATTAACTCTTGGTTCATAGGGTAA 58.075 34.615 0.00 0.00 39.17 2.85
108 109 8.047310 ACATTAACTCTTGGTTCATAGGGTAAG 58.953 37.037 0.00 0.00 39.17 2.34
109 110 7.801893 TTAACTCTTGGTTCATAGGGTAAGA 57.198 36.000 0.00 0.00 39.17 2.10
110 111 6.697641 AACTCTTGGTTCATAGGGTAAGAA 57.302 37.500 0.00 0.00 31.69 2.52
111 112 6.893020 ACTCTTGGTTCATAGGGTAAGAAT 57.107 37.500 0.00 0.00 0.00 2.40
112 113 7.989947 ACTCTTGGTTCATAGGGTAAGAATA 57.010 36.000 0.00 0.00 0.00 1.75
113 114 8.568617 ACTCTTGGTTCATAGGGTAAGAATAT 57.431 34.615 0.00 0.00 0.00 1.28
114 115 8.652290 ACTCTTGGTTCATAGGGTAAGAATATC 58.348 37.037 0.00 0.00 0.00 1.63
115 116 8.561536 TCTTGGTTCATAGGGTAAGAATATCA 57.438 34.615 0.00 0.00 0.00 2.15
116 117 9.170890 TCTTGGTTCATAGGGTAAGAATATCAT 57.829 33.333 0.00 0.00 0.00 2.45
119 120 9.837681 TGGTTCATAGGGTAAGAATATCATAGA 57.162 33.333 0.00 0.00 0.00 1.98
197 198 9.857656 AAAGATGTGTCATTTGATGTATAGGAT 57.142 29.630 0.00 0.00 0.00 3.24
217 218 7.929941 AGGATAGAAATTTTTCCACTGAGTC 57.070 36.000 14.53 0.00 37.92 3.36
218 219 7.694093 AGGATAGAAATTTTTCCACTGAGTCT 58.306 34.615 14.53 0.00 37.92 3.24
219 220 8.826765 AGGATAGAAATTTTTCCACTGAGTCTA 58.173 33.333 14.53 0.00 37.92 2.59
220 221 9.103861 GGATAGAAATTTTTCCACTGAGTCTAG 57.896 37.037 9.62 0.00 37.92 2.43
221 222 9.877178 GATAGAAATTTTTCCACTGAGTCTAGA 57.123 33.333 0.00 0.00 37.92 2.43
228 229 9.965902 ATTTTTCCACTGAGTCTAGATTAATGT 57.034 29.630 0.00 0.00 0.00 2.71
229 230 9.793259 TTTTTCCACTGAGTCTAGATTAATGTT 57.207 29.630 0.00 0.00 0.00 2.71
230 231 9.793259 TTTTCCACTGAGTCTAGATTAATGTTT 57.207 29.630 0.00 0.00 0.00 2.83
231 232 9.793259 TTTCCACTGAGTCTAGATTAATGTTTT 57.207 29.630 0.00 0.00 0.00 2.43
232 233 9.793259 TTCCACTGAGTCTAGATTAATGTTTTT 57.207 29.630 0.00 0.00 0.00 1.94
261 262 6.002062 CTTTACACTGTGAAGGATTGGTTC 57.998 41.667 15.86 0.00 0.00 3.62
262 263 2.863809 ACACTGTGAAGGATTGGTTCC 58.136 47.619 15.86 0.00 45.85 3.62
274 275 5.388408 GGATTGGTTCCTATCCTACGTAG 57.612 47.826 15.92 15.92 41.78 3.51
275 276 4.220163 GGATTGGTTCCTATCCTACGTAGG 59.780 50.000 32.05 32.05 42.06 3.18
289 290 6.607004 CCTACGTAGGAATAGGAATCCATT 57.393 41.667 33.93 0.00 46.63 3.16
290 291 7.005709 CCTACGTAGGAATAGGAATCCATTT 57.994 40.000 33.93 0.00 46.63 2.32
291 292 7.450903 CCTACGTAGGAATAGGAATCCATTTT 58.549 38.462 33.93 0.00 46.63 1.82
292 293 7.603024 CCTACGTAGGAATAGGAATCCATTTTC 59.397 40.741 33.93 1.30 46.63 2.29
293 294 6.895782 ACGTAGGAATAGGAATCCATTTTCA 58.104 36.000 0.61 0.00 39.55 2.69
294 295 6.766467 ACGTAGGAATAGGAATCCATTTTCAC 59.234 38.462 0.61 0.00 39.55 3.18
295 296 6.765989 CGTAGGAATAGGAATCCATTTTCACA 59.234 38.462 0.61 0.00 39.55 3.58
296 297 7.445402 CGTAGGAATAGGAATCCATTTTCACAT 59.555 37.037 0.61 0.00 39.55 3.21
297 298 9.793259 GTAGGAATAGGAATCCATTTTCACATA 57.207 33.333 0.61 0.00 39.55 2.29
298 299 8.930846 AGGAATAGGAATCCATTTTCACATAG 57.069 34.615 0.61 0.00 39.55 2.23
299 300 7.449704 AGGAATAGGAATCCATTTTCACATAGC 59.550 37.037 0.61 0.00 39.55 2.97
300 301 7.231317 GGAATAGGAATCCATTTTCACATAGCA 59.769 37.037 0.61 0.00 36.92 3.49
301 302 8.537728 AATAGGAATCCATTTTCACATAGCAA 57.462 30.769 0.61 0.00 0.00 3.91
302 303 6.855763 AGGAATCCATTTTCACATAGCAAA 57.144 33.333 0.61 0.00 0.00 3.68
303 304 6.870769 AGGAATCCATTTTCACATAGCAAAG 58.129 36.000 0.61 0.00 0.00 2.77
304 305 6.044682 GGAATCCATTTTCACATAGCAAAGG 58.955 40.000 0.00 0.00 0.00 3.11
305 306 5.603170 ATCCATTTTCACATAGCAAAGGG 57.397 39.130 0.00 0.00 33.53 3.95
306 307 3.195396 TCCATTTTCACATAGCAAAGGGC 59.805 43.478 0.00 0.00 45.30 5.19
318 319 3.407424 GCAAAGGGCTGAAAAGGAATT 57.593 42.857 0.00 0.00 40.25 2.17
319 320 3.329386 GCAAAGGGCTGAAAAGGAATTC 58.671 45.455 0.00 0.00 40.25 2.17
320 321 3.007290 GCAAAGGGCTGAAAAGGAATTCT 59.993 43.478 5.23 0.00 40.25 2.40
321 322 4.503817 GCAAAGGGCTGAAAAGGAATTCTT 60.504 41.667 5.23 0.00 40.25 2.52
322 323 5.233225 CAAAGGGCTGAAAAGGAATTCTTC 58.767 41.667 5.23 2.33 33.94 2.87
338 339 8.439993 GGAATTCTTCCTACAAAACTCCTATC 57.560 38.462 5.23 0.00 46.57 2.08
339 340 7.499563 GGAATTCTTCCTACAAAACTCCTATCC 59.500 40.741 5.23 0.00 46.57 2.59
340 341 7.757242 ATTCTTCCTACAAAACTCCTATCCT 57.243 36.000 0.00 0.00 0.00 3.24
341 342 7.569599 TTCTTCCTACAAAACTCCTATCCTT 57.430 36.000 0.00 0.00 0.00 3.36
342 343 7.569599 TCTTCCTACAAAACTCCTATCCTTT 57.430 36.000 0.00 0.00 0.00 3.11
343 344 8.674925 TCTTCCTACAAAACTCCTATCCTTTA 57.325 34.615 0.00 0.00 0.00 1.85
344 345 8.759782 TCTTCCTACAAAACTCCTATCCTTTAG 58.240 37.037 0.00 0.00 0.00 1.85
345 346 8.674925 TTCCTACAAAACTCCTATCCTTTAGA 57.325 34.615 0.00 0.00 0.00 2.10
346 347 8.674925 TCCTACAAAACTCCTATCCTTTAGAA 57.325 34.615 0.00 0.00 0.00 2.10
347 348 9.280456 TCCTACAAAACTCCTATCCTTTAGAAT 57.720 33.333 0.00 0.00 0.00 2.40
348 349 9.907229 CCTACAAAACTCCTATCCTTTAGAATT 57.093 33.333 0.00 0.00 0.00 2.17
350 351 8.809468 ACAAAACTCCTATCCTTTAGAATTCC 57.191 34.615 0.65 0.00 0.00 3.01
351 352 8.615705 ACAAAACTCCTATCCTTTAGAATTCCT 58.384 33.333 0.65 0.00 0.00 3.36
354 355 8.855804 AACTCCTATCCTTTAGAATTCCTACA 57.144 34.615 0.65 0.00 0.00 2.74
355 356 8.855804 ACTCCTATCCTTTAGAATTCCTACAA 57.144 34.615 0.65 0.00 0.00 2.41
356 357 9.280456 ACTCCTATCCTTTAGAATTCCTACAAA 57.720 33.333 0.65 0.00 0.00 2.83
362 363 9.997172 ATCCTTTAGAATTCCTACAAAATTCCT 57.003 29.630 0.65 0.00 41.82 3.36
366 367 8.747538 TTAGAATTCCTACAAAATTCCTAGGC 57.252 34.615 2.96 0.00 41.82 3.93
367 368 6.129874 AGAATTCCTACAAAATTCCTAGGCC 58.870 40.000 2.96 0.00 41.82 5.19
368 369 5.734031 ATTCCTACAAAATTCCTAGGCCT 57.266 39.130 11.78 11.78 0.00 5.19
369 370 5.530176 TTCCTACAAAATTCCTAGGCCTT 57.470 39.130 12.58 0.00 0.00 4.35
370 371 6.645884 TTCCTACAAAATTCCTAGGCCTTA 57.354 37.500 12.58 0.00 0.00 2.69
371 372 6.248569 TCCTACAAAATTCCTAGGCCTTAG 57.751 41.667 12.58 6.41 0.00 2.18
382 383 5.695424 CCTAGGCCTTAGGTTTAAAGTCT 57.305 43.478 12.58 0.00 43.50 3.24
383 384 6.803366 CCTAGGCCTTAGGTTTAAAGTCTA 57.197 41.667 12.58 0.00 43.50 2.59
384 385 6.580788 CCTAGGCCTTAGGTTTAAAGTCTAC 58.419 44.000 12.58 0.00 43.50 2.59
385 386 6.383436 CCTAGGCCTTAGGTTTAAAGTCTACT 59.617 42.308 12.58 0.00 43.50 2.57
386 387 7.562821 CCTAGGCCTTAGGTTTAAAGTCTACTA 59.437 40.741 12.58 0.00 43.50 1.82
387 388 7.991647 AGGCCTTAGGTTTAAAGTCTACTAT 57.008 36.000 0.00 0.00 0.00 2.12
389 390 9.671862 AGGCCTTAGGTTTAAAGTCTACTATAT 57.328 33.333 0.00 0.00 0.00 0.86
406 407 9.678941 TCTACTATATTTACATGCAGAGAAACG 57.321 33.333 0.00 0.00 0.00 3.60
407 408 9.678941 CTACTATATTTACATGCAGAGAAACGA 57.321 33.333 0.00 0.00 0.00 3.85
408 409 8.581057 ACTATATTTACATGCAGAGAAACGAG 57.419 34.615 0.00 0.00 0.00 4.18
409 410 4.606457 ATTTACATGCAGAGAAACGAGC 57.394 40.909 0.00 0.00 0.00 5.03
410 411 2.010145 TACATGCAGAGAAACGAGCC 57.990 50.000 0.00 0.00 0.00 4.70
411 412 0.322975 ACATGCAGAGAAACGAGCCT 59.677 50.000 0.00 0.00 0.00 4.58
412 413 1.005340 CATGCAGAGAAACGAGCCTC 58.995 55.000 0.00 0.00 0.00 4.70
413 414 0.107945 ATGCAGAGAAACGAGCCTCC 60.108 55.000 0.00 0.00 0.00 4.30
414 415 1.448717 GCAGAGAAACGAGCCTCCC 60.449 63.158 0.00 0.00 0.00 4.30
415 416 1.975327 CAGAGAAACGAGCCTCCCA 59.025 57.895 0.00 0.00 0.00 4.37
416 417 0.108424 CAGAGAAACGAGCCTCCCAG 60.108 60.000 0.00 0.00 0.00 4.45
417 418 0.543174 AGAGAAACGAGCCTCCCAGT 60.543 55.000 0.00 0.00 0.00 4.00
418 419 0.321996 GAGAAACGAGCCTCCCAGTT 59.678 55.000 0.00 0.00 0.00 3.16
419 420 0.321996 AGAAACGAGCCTCCCAGTTC 59.678 55.000 0.00 0.00 0.00 3.01
420 421 1.004918 AAACGAGCCTCCCAGTTCG 60.005 57.895 0.00 0.00 38.88 3.95
421 422 2.450479 AAACGAGCCTCCCAGTTCGG 62.450 60.000 3.00 0.00 37.38 4.30
422 423 3.382832 CGAGCCTCCCAGTTCGGT 61.383 66.667 0.00 0.00 0.00 4.69
423 424 2.943978 CGAGCCTCCCAGTTCGGTT 61.944 63.158 0.00 0.00 0.00 4.44
424 425 1.376037 GAGCCTCCCAGTTCGGTTG 60.376 63.158 0.00 0.00 0.00 3.77
425 426 1.827399 GAGCCTCCCAGTTCGGTTGA 61.827 60.000 0.00 0.00 0.00 3.18
426 427 1.072505 GCCTCCCAGTTCGGTTGAA 59.927 57.895 0.00 0.00 0.00 2.69
427 428 0.536460 GCCTCCCAGTTCGGTTGAAA 60.536 55.000 0.00 0.00 35.46 2.69
428 429 1.975660 CCTCCCAGTTCGGTTGAAAA 58.024 50.000 0.00 0.00 35.46 2.29
429 430 2.514803 CCTCCCAGTTCGGTTGAAAAT 58.485 47.619 0.00 0.00 35.46 1.82
430 431 2.890945 CCTCCCAGTTCGGTTGAAAATT 59.109 45.455 0.00 0.00 35.46 1.82
431 432 3.320826 CCTCCCAGTTCGGTTGAAAATTT 59.679 43.478 0.00 0.00 35.46 1.82
432 433 4.202212 CCTCCCAGTTCGGTTGAAAATTTT 60.202 41.667 2.28 2.28 35.46 1.82
433 434 5.010213 CCTCCCAGTTCGGTTGAAAATTTTA 59.990 40.000 2.75 0.00 35.46 1.52
434 435 6.079424 TCCCAGTTCGGTTGAAAATTTTAG 57.921 37.500 2.75 0.00 35.46 1.85
435 436 5.010213 TCCCAGTTCGGTTGAAAATTTTAGG 59.990 40.000 2.75 0.00 35.46 2.69
436 437 5.010213 CCCAGTTCGGTTGAAAATTTTAGGA 59.990 40.000 2.75 0.00 35.46 2.94
437 438 6.295067 CCCAGTTCGGTTGAAAATTTTAGGAT 60.295 38.462 2.75 0.00 35.46 3.24
438 439 6.586082 CCAGTTCGGTTGAAAATTTTAGGATG 59.414 38.462 2.75 0.00 35.46 3.51
439 440 7.145323 CAGTTCGGTTGAAAATTTTAGGATGT 58.855 34.615 2.75 0.00 35.46 3.06
440 441 7.651704 CAGTTCGGTTGAAAATTTTAGGATGTT 59.348 33.333 2.75 0.00 35.46 2.71
441 442 8.201464 AGTTCGGTTGAAAATTTTAGGATGTTT 58.799 29.630 2.75 0.00 35.46 2.83
442 443 7.938563 TCGGTTGAAAATTTTAGGATGTTTG 57.061 32.000 2.75 0.00 0.00 2.93
443 444 7.717568 TCGGTTGAAAATTTTAGGATGTTTGA 58.282 30.769 2.75 0.00 0.00 2.69
444 445 8.364142 TCGGTTGAAAATTTTAGGATGTTTGAT 58.636 29.630 2.75 0.00 0.00 2.57
445 446 8.987890 CGGTTGAAAATTTTAGGATGTTTGATT 58.012 29.630 2.75 0.00 0.00 2.57
448 449 8.845413 TGAAAATTTTAGGATGTTTGATTGGG 57.155 30.769 2.75 0.00 0.00 4.12
449 450 8.654997 TGAAAATTTTAGGATGTTTGATTGGGA 58.345 29.630 2.75 0.00 0.00 4.37
450 451 8.846943 AAAATTTTAGGATGTTTGATTGGGAC 57.153 30.769 0.37 0.00 0.00 4.46
451 452 5.637006 TTTTAGGATGTTTGATTGGGACG 57.363 39.130 0.00 0.00 0.00 4.79
452 453 2.879103 AGGATGTTTGATTGGGACGT 57.121 45.000 0.00 0.00 0.00 4.34
453 454 3.992943 AGGATGTTTGATTGGGACGTA 57.007 42.857 0.00 0.00 0.00 3.57
454 455 4.295141 AGGATGTTTGATTGGGACGTAA 57.705 40.909 0.00 0.00 0.00 3.18
455 456 4.658063 AGGATGTTTGATTGGGACGTAAA 58.342 39.130 0.00 0.00 0.00 2.01
456 457 5.261216 AGGATGTTTGATTGGGACGTAAAT 58.739 37.500 0.00 0.00 0.00 1.40
457 458 5.357032 AGGATGTTTGATTGGGACGTAAATC 59.643 40.000 9.89 9.89 34.11 2.17
458 459 5.124776 GGATGTTTGATTGGGACGTAAATCA 59.875 40.000 13.78 13.78 40.21 2.57
459 460 6.349777 GGATGTTTGATTGGGACGTAAATCAA 60.350 38.462 20.88 20.88 46.06 2.57
460 461 6.582677 TGTTTGATTGGGACGTAAATCAAT 57.417 33.333 23.38 15.31 46.61 2.57
461 462 6.385843 TGTTTGATTGGGACGTAAATCAATG 58.614 36.000 23.38 0.00 46.61 2.82
462 463 6.015856 TGTTTGATTGGGACGTAAATCAATGT 60.016 34.615 23.38 1.78 46.61 2.71
463 464 6.582677 TTGATTGGGACGTAAATCAATGTT 57.417 33.333 20.88 0.00 44.05 2.71
464 465 6.189677 TGATTGGGACGTAAATCAATGTTC 57.810 37.500 14.89 3.12 39.28 3.18
465 466 5.943416 TGATTGGGACGTAAATCAATGTTCT 59.057 36.000 14.89 0.00 39.28 3.01
466 467 7.106890 TGATTGGGACGTAAATCAATGTTCTA 58.893 34.615 14.89 0.00 39.28 2.10
467 468 7.773224 TGATTGGGACGTAAATCAATGTTCTAT 59.227 33.333 14.89 0.00 39.28 1.98
468 469 9.268268 GATTGGGACGTAAATCAATGTTCTATA 57.732 33.333 11.31 0.00 33.77 1.31
469 470 8.428186 TTGGGACGTAAATCAATGTTCTATAC 57.572 34.615 0.00 0.00 0.00 1.47
470 471 6.987992 TGGGACGTAAATCAATGTTCTATACC 59.012 38.462 0.00 0.00 0.00 2.73
471 472 6.145048 GGGACGTAAATCAATGTTCTATACCG 59.855 42.308 0.00 0.00 0.00 4.02
472 473 6.346359 GGACGTAAATCAATGTTCTATACCGC 60.346 42.308 0.00 0.00 0.00 5.68
473 474 6.044046 ACGTAAATCAATGTTCTATACCGCA 58.956 36.000 0.00 0.00 0.00 5.69
474 475 6.200286 ACGTAAATCAATGTTCTATACCGCAG 59.800 38.462 0.00 0.00 0.00 5.18
475 476 6.419710 CGTAAATCAATGTTCTATACCGCAGA 59.580 38.462 0.00 0.00 0.00 4.26
476 477 7.116376 CGTAAATCAATGTTCTATACCGCAGAT 59.884 37.037 0.00 0.00 0.00 2.90
477 478 7.807977 AAATCAATGTTCTATACCGCAGATT 57.192 32.000 0.00 0.00 0.00 2.40
478 479 7.426929 AATCAATGTTCTATACCGCAGATTC 57.573 36.000 0.00 0.00 0.00 2.52
479 480 5.297547 TCAATGTTCTATACCGCAGATTCC 58.702 41.667 0.00 0.00 0.00 3.01
480 481 4.955811 ATGTTCTATACCGCAGATTCCA 57.044 40.909 0.00 0.00 0.00 3.53
481 482 4.955811 TGTTCTATACCGCAGATTCCAT 57.044 40.909 0.00 0.00 0.00 3.41
482 483 5.290493 TGTTCTATACCGCAGATTCCATT 57.710 39.130 0.00 0.00 0.00 3.16
483 484 5.680619 TGTTCTATACCGCAGATTCCATTT 58.319 37.500 0.00 0.00 0.00 2.32
484 485 6.119536 TGTTCTATACCGCAGATTCCATTTT 58.880 36.000 0.00 0.00 0.00 1.82
485 486 6.601613 TGTTCTATACCGCAGATTCCATTTTT 59.398 34.615 0.00 0.00 0.00 1.94
528 529 8.798859 TCTCGGTTTATTAGTAGTTACTGACT 57.201 34.615 0.00 0.00 42.55 3.41
529 530 8.887717 TCTCGGTTTATTAGTAGTTACTGACTC 58.112 37.037 0.00 0.00 39.86 3.36
530 531 8.565896 TCGGTTTATTAGTAGTTACTGACTCA 57.434 34.615 0.00 0.00 39.86 3.41
531 532 8.454106 TCGGTTTATTAGTAGTTACTGACTCAC 58.546 37.037 0.00 0.00 39.86 3.51
532 533 8.457261 CGGTTTATTAGTAGTTACTGACTCACT 58.543 37.037 0.00 0.00 39.86 3.41
533 534 9.570488 GGTTTATTAGTAGTTACTGACTCACTG 57.430 37.037 0.00 0.00 39.86 3.66
534 535 9.570488 GTTTATTAGTAGTTACTGACTCACTGG 57.430 37.037 0.00 0.00 39.86 4.00
535 536 6.777213 ATTAGTAGTTACTGACTCACTGGG 57.223 41.667 0.00 0.00 39.86 4.45
536 537 4.115398 AGTAGTTACTGACTCACTGGGT 57.885 45.455 0.00 0.00 39.86 4.51
537 538 4.080687 AGTAGTTACTGACTCACTGGGTC 58.919 47.826 1.64 1.64 39.86 4.46
538 539 1.887198 AGTTACTGACTCACTGGGTCG 59.113 52.381 4.56 2.52 36.58 4.79
539 540 1.612463 GTTACTGACTCACTGGGTCGT 59.388 52.381 4.56 7.89 36.58 4.34
540 541 1.244816 TACTGACTCACTGGGTCGTG 58.755 55.000 13.53 8.04 36.58 4.35
541 542 1.373497 CTGACTCACTGGGTCGTGC 60.373 63.158 4.56 0.00 36.58 5.34
542 543 1.810606 CTGACTCACTGGGTCGTGCT 61.811 60.000 4.56 0.00 36.58 4.40
543 544 0.538746 TGACTCACTGGGTCGTGCTA 60.539 55.000 4.56 0.00 36.58 3.49
544 545 0.818296 GACTCACTGGGTCGTGCTAT 59.182 55.000 0.00 0.00 34.92 2.97
545 546 2.022195 GACTCACTGGGTCGTGCTATA 58.978 52.381 0.00 0.00 34.92 1.31
546 547 2.623889 GACTCACTGGGTCGTGCTATAT 59.376 50.000 0.00 0.00 34.92 0.86
547 548 2.623889 ACTCACTGGGTCGTGCTATATC 59.376 50.000 0.00 0.00 34.92 1.63
548 549 2.887783 CTCACTGGGTCGTGCTATATCT 59.112 50.000 0.00 0.00 34.92 1.98
549 550 2.885266 TCACTGGGTCGTGCTATATCTC 59.115 50.000 0.00 0.00 34.92 2.75
550 551 2.623416 CACTGGGTCGTGCTATATCTCA 59.377 50.000 0.00 0.00 0.00 3.27
551 552 2.887783 ACTGGGTCGTGCTATATCTCAG 59.112 50.000 0.00 0.00 0.00 3.35
552 553 3.149981 CTGGGTCGTGCTATATCTCAGA 58.850 50.000 0.00 0.00 0.00 3.27
553 554 3.761218 CTGGGTCGTGCTATATCTCAGAT 59.239 47.826 0.00 0.00 0.00 2.90
554 555 4.152647 TGGGTCGTGCTATATCTCAGATT 58.847 43.478 0.00 0.00 0.00 2.40
555 556 4.021981 TGGGTCGTGCTATATCTCAGATTG 60.022 45.833 0.00 0.00 0.00 2.67
556 557 4.489810 GGTCGTGCTATATCTCAGATTGG 58.510 47.826 0.00 0.00 0.00 3.16
557 558 4.489810 GTCGTGCTATATCTCAGATTGGG 58.510 47.826 0.00 0.00 0.00 4.12
558 559 4.218635 GTCGTGCTATATCTCAGATTGGGA 59.781 45.833 0.00 0.00 0.00 4.37
559 560 4.218635 TCGTGCTATATCTCAGATTGGGAC 59.781 45.833 0.00 0.00 23.94 4.46
560 561 4.021981 CGTGCTATATCTCAGATTGGGACA 60.022 45.833 0.00 0.00 23.94 4.02
561 562 5.337089 CGTGCTATATCTCAGATTGGGACAT 60.337 44.000 0.00 0.00 39.30 3.06
562 563 5.873712 GTGCTATATCTCAGATTGGGACATG 59.126 44.000 0.00 0.00 39.30 3.21
563 564 4.874966 GCTATATCTCAGATTGGGACATGC 59.125 45.833 0.00 0.00 39.30 4.06
564 565 2.653234 ATCTCAGATTGGGACATGCC 57.347 50.000 0.00 0.00 39.30 4.40
565 566 1.288188 TCTCAGATTGGGACATGCCA 58.712 50.000 8.20 0.00 39.30 4.92
566 567 1.065199 TCTCAGATTGGGACATGCCAC 60.065 52.381 8.20 0.00 39.30 5.01
567 568 0.994247 TCAGATTGGGACATGCCACT 59.006 50.000 8.20 0.00 39.30 4.00
568 569 1.100510 CAGATTGGGACATGCCACTG 58.899 55.000 8.20 0.00 39.30 3.66
569 570 0.682209 AGATTGGGACATGCCACTGC 60.682 55.000 8.20 0.00 39.30 4.40
570 571 0.682209 GATTGGGACATGCCACTGCT 60.682 55.000 8.20 0.00 39.30 4.24
571 572 0.251922 ATTGGGACATGCCACTGCTT 60.252 50.000 8.20 0.00 39.30 3.91
572 573 1.180456 TTGGGACATGCCACTGCTTG 61.180 55.000 8.20 0.00 45.49 4.01
573 574 1.303561 GGGACATGCCACTGCTTGA 60.304 57.895 7.34 0.00 43.40 3.02
574 575 0.682209 GGGACATGCCACTGCTTGAT 60.682 55.000 7.34 0.00 43.40 2.57
575 576 1.180029 GGACATGCCACTGCTTGATT 58.820 50.000 7.34 0.00 43.40 2.57
576 577 1.135199 GGACATGCCACTGCTTGATTG 60.135 52.381 7.34 0.00 43.40 2.67
577 578 0.892755 ACATGCCACTGCTTGATTGG 59.107 50.000 7.34 0.00 43.40 3.16
578 579 0.174845 CATGCCACTGCTTGATTGGG 59.825 55.000 0.00 0.00 43.40 4.12
579 580 0.040058 ATGCCACTGCTTGATTGGGA 59.960 50.000 0.00 0.00 38.71 4.37
580 581 0.895100 TGCCACTGCTTGATTGGGAC 60.895 55.000 0.00 0.00 38.71 4.46
581 582 0.895100 GCCACTGCTTGATTGGGACA 60.895 55.000 0.00 0.00 33.53 4.02
582 583 1.843368 CCACTGCTTGATTGGGACAT 58.157 50.000 0.00 0.00 39.30 3.06
583 584 2.945440 GCCACTGCTTGATTGGGACATA 60.945 50.000 0.00 0.00 33.46 2.29
584 585 3.355378 CCACTGCTTGATTGGGACATAA 58.645 45.455 0.00 0.00 39.30 1.90
585 586 3.763360 CCACTGCTTGATTGGGACATAAA 59.237 43.478 0.00 0.00 39.30 1.40
586 587 4.403432 CCACTGCTTGATTGGGACATAAAT 59.597 41.667 0.00 0.00 39.30 1.40
587 588 5.450965 CCACTGCTTGATTGGGACATAAATC 60.451 44.000 0.00 0.00 39.30 2.17
588 589 5.125900 CACTGCTTGATTGGGACATAAATCA 59.874 40.000 0.00 0.00 40.21 2.57
589 590 5.716228 ACTGCTTGATTGGGACATAAATCAA 59.284 36.000 9.68 9.68 45.74 2.57
590 591 6.381994 ACTGCTTGATTGGGACATAAATCAAT 59.618 34.615 10.32 0.00 46.33 2.57
591 592 6.575267 TGCTTGATTGGGACATAAATCAATG 58.425 36.000 10.32 7.04 46.33 2.82
592 593 6.154877 TGCTTGATTGGGACATAAATCAATGT 59.845 34.615 10.32 0.00 46.33 2.71
593 594 7.043565 GCTTGATTGGGACATAAATCAATGTT 58.956 34.615 10.32 0.00 46.33 2.71
594 595 7.223387 GCTTGATTGGGACATAAATCAATGTTC 59.777 37.037 10.32 0.00 46.33 3.18
595 596 7.959658 TGATTGGGACATAAATCAATGTTCT 57.040 32.000 0.00 0.00 40.17 3.01
596 597 9.473007 TTGATTGGGACATAAATCAATGTTCTA 57.527 29.630 6.70 0.00 44.05 2.10
597 598 9.645128 TGATTGGGACATAAATCAATGTTCTAT 57.355 29.630 0.00 0.00 40.17 1.98
600 601 8.918202 TGGGACATAAATCAATGTTCTATACC 57.082 34.615 0.00 0.00 40.17 2.73
601 602 8.723365 TGGGACATAAATCAATGTTCTATACCT 58.277 33.333 0.00 0.00 40.17 3.08
602 603 9.220767 GGGACATAAATCAATGTTCTATACCTC 57.779 37.037 0.00 0.00 40.17 3.85
603 604 9.778741 GGACATAAATCAATGTTCTATACCTCA 57.221 33.333 0.00 0.00 40.17 3.86
632 633 4.360951 TTTTTCATGTACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
633 634 3.604875 TTTCATGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
634 635 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
635 636 1.006758 TCATGTACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
636 637 2.242965 TCATGTACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
637 638 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
638 639 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
639 640 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
640 641 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
641 642 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
642 643 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
643 644 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
644 645 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
645 646 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
646 647 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
647 648 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
648 649 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
649 650 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
650 651 7.758076 CCCTCCGTTCCTAAATATTTGTTTTTC 59.242 37.037 11.05 0.00 0.00 2.29
651 652 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
672 673 9.801873 TTTTCTAAAGATTTCAACAAGTTGGAG 57.198 29.630 12.54 0.00 40.78 3.86
673 674 6.970484 TCTAAAGATTTCAACAAGTTGGAGC 58.030 36.000 12.54 5.49 40.78 4.70
674 675 5.596836 AAAGATTTCAACAAGTTGGAGCA 57.403 34.783 12.54 0.00 40.78 4.26
675 676 5.596836 AAGATTTCAACAAGTTGGAGCAA 57.403 34.783 12.54 0.00 40.78 3.91
676 677 5.596836 AGATTTCAACAAGTTGGAGCAAA 57.403 34.783 12.54 6.56 40.78 3.68
677 678 5.976458 AGATTTCAACAAGTTGGAGCAAAA 58.024 33.333 12.54 6.24 40.78 2.44
678 679 6.585416 AGATTTCAACAAGTTGGAGCAAAAT 58.415 32.000 12.54 10.18 40.78 1.82
679 680 6.480981 AGATTTCAACAAGTTGGAGCAAAATG 59.519 34.615 12.54 0.00 40.78 2.32
680 681 4.998671 TCAACAAGTTGGAGCAAAATGA 57.001 36.364 12.54 0.00 40.78 2.57
681 682 4.935702 TCAACAAGTTGGAGCAAAATGAG 58.064 39.130 12.54 0.00 40.78 2.90
682 683 4.402155 TCAACAAGTTGGAGCAAAATGAGT 59.598 37.500 12.54 0.00 40.78 3.41
683 684 4.311816 ACAAGTTGGAGCAAAATGAGTG 57.688 40.909 7.96 0.00 0.00 3.51
684 685 3.953612 ACAAGTTGGAGCAAAATGAGTGA 59.046 39.130 7.96 0.00 0.00 3.41
685 686 4.402155 ACAAGTTGGAGCAAAATGAGTGAA 59.598 37.500 7.96 0.00 0.00 3.18
686 687 5.069516 ACAAGTTGGAGCAAAATGAGTGAAT 59.930 36.000 7.96 0.00 0.00 2.57
687 688 5.382618 AGTTGGAGCAAAATGAGTGAATC 57.617 39.130 0.00 0.00 0.00 2.52
688 689 5.075493 AGTTGGAGCAAAATGAGTGAATCT 58.925 37.500 0.00 0.00 0.00 2.40
689 690 6.240894 AGTTGGAGCAAAATGAGTGAATCTA 58.759 36.000 0.00 0.00 0.00 1.98
690 691 6.150140 AGTTGGAGCAAAATGAGTGAATCTAC 59.850 38.462 0.00 0.00 0.00 2.59
691 692 5.809001 TGGAGCAAAATGAGTGAATCTACT 58.191 37.500 0.00 0.00 0.00 2.57
692 693 5.877012 TGGAGCAAAATGAGTGAATCTACTC 59.123 40.000 0.00 0.00 45.71 2.59
693 694 6.112058 GGAGCAAAATGAGTGAATCTACTCT 58.888 40.000 11.86 0.00 45.70 3.24
694 695 6.597280 GGAGCAAAATGAGTGAATCTACTCTT 59.403 38.462 11.86 5.43 45.70 2.85
695 696 7.120432 GGAGCAAAATGAGTGAATCTACTCTTT 59.880 37.037 11.86 9.63 45.70 2.52
696 697 9.155975 GAGCAAAATGAGTGAATCTACTCTTTA 57.844 33.333 11.86 0.00 45.70 1.85
697 698 9.507329 AGCAAAATGAGTGAATCTACTCTTTAA 57.493 29.630 11.86 0.00 45.70 1.52
728 729 9.081204 TGTTTATATACATCCGTATGTGGTAGT 57.919 33.333 3.56 0.00 45.99 2.73
729 730 9.565213 GTTTATATACATCCGTATGTGGTAGTC 57.435 37.037 3.56 0.00 45.99 2.59
730 731 9.524496 TTTATATACATCCGTATGTGGTAGTCT 57.476 33.333 3.56 0.00 45.99 3.24
733 734 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
734 735 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
735 736 6.513180 ACATCCGTATGTGGTAGTCTATTTG 58.487 40.000 0.00 0.00 44.79 2.32
736 737 6.322969 ACATCCGTATGTGGTAGTCTATTTGA 59.677 38.462 0.00 0.00 44.79 2.69
737 738 6.778834 TCCGTATGTGGTAGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
738 739 7.356089 TCCGTATGTGGTAGTCTATTTGAAT 57.644 36.000 0.00 0.00 0.00 2.57
739 740 7.207383 TCCGTATGTGGTAGTCTATTTGAATG 58.793 38.462 0.00 0.00 0.00 2.67
740 741 7.068962 TCCGTATGTGGTAGTCTATTTGAATGA 59.931 37.037 0.00 0.00 0.00 2.57
741 742 7.709182 CCGTATGTGGTAGTCTATTTGAATGAA 59.291 37.037 0.00 0.00 0.00 2.57
742 743 9.093970 CGTATGTGGTAGTCTATTTGAATGAAA 57.906 33.333 0.00 0.00 0.00 2.69
745 746 9.911788 ATGTGGTAGTCTATTTGAATGAAATCT 57.088 29.630 0.00 0.00 35.74 2.40
746 747 9.383519 TGTGGTAGTCTATTTGAATGAAATCTC 57.616 33.333 0.00 0.00 35.74 2.75
747 748 9.606631 GTGGTAGTCTATTTGAATGAAATCTCT 57.393 33.333 0.00 0.00 35.74 3.10
775 776 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
776 777 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
777 778 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
778 779 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
779 780 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
780 781 9.004231 ACAAATATTTAGGAACAGAGGGAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
785 786 8.798975 ATTTAGGAACAGAGGGAGTATATCAA 57.201 34.615 0.00 0.00 0.00 2.57
786 787 8.618240 TTTAGGAACAGAGGGAGTATATCAAA 57.382 34.615 0.00 0.00 0.00 2.69
787 788 8.618240 TTAGGAACAGAGGGAGTATATCAAAA 57.382 34.615 0.00 0.00 0.00 2.44
788 789 6.890293 AGGAACAGAGGGAGTATATCAAAAC 58.110 40.000 0.00 0.00 0.00 2.43
789 790 6.443849 AGGAACAGAGGGAGTATATCAAAACA 59.556 38.462 0.00 0.00 0.00 2.83
833 835 3.833545 ACTGACTCACTGTGTCGTATC 57.166 47.619 7.79 0.97 37.26 2.24
872 874 3.307782 CCTTGTTGTCAAAGTTACGACGT 59.692 43.478 5.52 5.52 34.50 4.34
920 923 2.159085 GGACTTCTATGACTCAACCCGG 60.159 54.545 0.00 0.00 0.00 5.73
977 981 2.373169 TGGATTCATCTATCCCACCAGC 59.627 50.000 0.00 0.00 42.91 4.85
1365 1369 1.446792 CTTCTCCGTGTGCGATGCT 60.447 57.895 0.00 0.00 41.33 3.79
1515 1519 1.418755 GCAACCTTACAGCGCGTAC 59.581 57.895 8.43 0.00 0.00 3.67
1788 1792 2.941064 CGGTGTGATCAAGCATCAGAAT 59.059 45.455 0.00 0.00 42.55 2.40
1881 1885 2.590114 GGGGTTGTACACCTCGGCT 61.590 63.158 12.36 0.00 46.38 5.52
1886 1890 0.179043 TTGTACACCTCGGCTGCAAA 60.179 50.000 0.50 0.00 0.00 3.68
2531 2535 9.374838 GGAGAGAATTTGATGTAAAATGCAATT 57.625 29.630 0.00 0.00 38.98 2.32
2750 2779 3.685139 CTGGCAGAGAAAACCAGTAGA 57.315 47.619 9.42 0.00 44.91 2.59
2790 2862 5.105063 GCTGGAGCATTTTACAAGATTTCC 58.895 41.667 0.00 0.00 41.59 3.13
2791 2863 5.336690 GCTGGAGCATTTTACAAGATTTCCA 60.337 40.000 0.00 0.00 41.59 3.53
2804 2876 0.171007 ATTTCCAAGCGATTGTGCCG 59.829 50.000 13.05 0.00 34.65 5.69
2878 2958 0.322277 CAATGCAGGGTCAGCTCAGT 60.322 55.000 0.00 0.00 0.00 3.41
2936 3165 1.405391 GGCCCATATGCAACACAAACC 60.405 52.381 0.00 0.00 0.00 3.27
2977 3206 5.834169 TCATTTATCGTTGACGCACCTATA 58.166 37.500 0.00 0.00 39.60 1.31
2981 3210 8.869897 CATTTATCGTTGACGCACCTATATATT 58.130 33.333 0.00 0.00 39.60 1.28
2983 3212 8.821147 TTATCGTTGACGCACCTATATATTTT 57.179 30.769 0.00 0.00 39.60 1.82
3039 3268 3.792401 TGCGTACTGGAATAACATGAGG 58.208 45.455 0.00 0.00 0.00 3.86
3114 3403 5.408299 CGGTGAATAGACATGAGTTTCACAA 59.592 40.000 23.41 0.00 41.47 3.33
3115 3404 6.603095 GGTGAATAGACATGAGTTTCACAAC 58.397 40.000 23.41 12.41 41.47 3.32
3124 3413 5.240183 ACATGAGTTTCACAACAGGATGAAG 59.760 40.000 0.00 0.00 39.69 3.02
3143 3432 4.166725 TGAAGATCAAGCATAACCAGGGAT 59.833 41.667 0.00 0.00 0.00 3.85
3148 3437 2.332063 AGCATAACCAGGGATCGTTG 57.668 50.000 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.052620 CTGTGCTGCTCATGCCAGC 62.053 63.158 23.24 23.24 40.84 4.85
2 3 2.407428 CCTGTGCTGCTCATGCCAG 61.407 63.158 4.73 8.36 38.71 4.85
3 4 2.360726 CCTGTGCTGCTCATGCCA 60.361 61.111 4.73 0.00 38.71 4.92
4 5 2.045634 TCCTGTGCTGCTCATGCC 60.046 61.111 4.73 0.00 38.71 4.40
5 6 2.747822 CGTCCTGTGCTGCTCATGC 61.748 63.158 4.73 0.00 40.20 4.06
6 7 1.357258 GACGTCCTGTGCTGCTCATG 61.357 60.000 3.51 2.85 0.00 3.07
7 8 1.079543 GACGTCCTGTGCTGCTCAT 60.080 57.895 3.51 0.00 0.00 2.90
8 9 2.340078 GACGTCCTGTGCTGCTCA 59.660 61.111 3.51 2.18 0.00 4.26
9 10 2.807045 CGACGTCCTGTGCTGCTC 60.807 66.667 10.58 0.00 0.00 4.26
12 13 1.959899 GATTGCGACGTCCTGTGCTG 61.960 60.000 10.58 0.00 0.00 4.41
13 14 1.738099 GATTGCGACGTCCTGTGCT 60.738 57.895 10.58 0.00 0.00 4.40
14 15 1.291877 AAGATTGCGACGTCCTGTGC 61.292 55.000 10.58 8.13 0.00 4.57
15 16 1.148310 AAAGATTGCGACGTCCTGTG 58.852 50.000 10.58 0.00 0.00 3.66
16 17 1.798813 GAAAAGATTGCGACGTCCTGT 59.201 47.619 10.58 0.00 0.00 4.00
17 18 1.798223 TGAAAAGATTGCGACGTCCTG 59.202 47.619 10.58 0.00 0.00 3.86
18 19 2.163818 TGAAAAGATTGCGACGTCCT 57.836 45.000 10.58 0.00 0.00 3.85
19 20 3.369756 TGTATGAAAAGATTGCGACGTCC 59.630 43.478 10.58 3.43 0.00 4.79
20 21 4.492570 CCTGTATGAAAAGATTGCGACGTC 60.493 45.833 5.18 5.18 0.00 4.34
21 22 3.370978 CCTGTATGAAAAGATTGCGACGT 59.629 43.478 0.00 0.00 0.00 4.34
22 23 3.616821 TCCTGTATGAAAAGATTGCGACG 59.383 43.478 0.00 0.00 0.00 5.12
23 24 5.545658 TTCCTGTATGAAAAGATTGCGAC 57.454 39.130 0.00 0.00 0.00 5.19
24 25 6.567687 TTTTCCTGTATGAAAAGATTGCGA 57.432 33.333 0.00 0.00 38.84 5.10
25 26 7.816945 ATTTTTCCTGTATGAAAAGATTGCG 57.183 32.000 0.00 0.00 43.09 4.85
26 27 8.375465 CGAATTTTTCCTGTATGAAAAGATTGC 58.625 33.333 0.00 0.00 43.09 3.56
27 28 8.863049 CCGAATTTTTCCTGTATGAAAAGATTG 58.137 33.333 0.00 0.00 43.09 2.67
28 29 7.545615 GCCGAATTTTTCCTGTATGAAAAGATT 59.454 33.333 0.00 0.00 43.09 2.40
29 30 7.035612 GCCGAATTTTTCCTGTATGAAAAGAT 58.964 34.615 0.00 0.00 43.09 2.40
30 31 6.015856 TGCCGAATTTTTCCTGTATGAAAAGA 60.016 34.615 0.00 0.00 43.09 2.52
31 32 6.089417 GTGCCGAATTTTTCCTGTATGAAAAG 59.911 38.462 0.00 0.00 43.09 2.27
32 33 5.923684 GTGCCGAATTTTTCCTGTATGAAAA 59.076 36.000 0.00 0.00 41.23 2.29
33 34 5.242838 AGTGCCGAATTTTTCCTGTATGAAA 59.757 36.000 0.00 0.00 32.60 2.69
34 35 4.764823 AGTGCCGAATTTTTCCTGTATGAA 59.235 37.500 0.00 0.00 0.00 2.57
35 36 4.331968 AGTGCCGAATTTTTCCTGTATGA 58.668 39.130 0.00 0.00 0.00 2.15
36 37 4.396166 AGAGTGCCGAATTTTTCCTGTATG 59.604 41.667 0.00 0.00 0.00 2.39
37 38 4.589908 AGAGTGCCGAATTTTTCCTGTAT 58.410 39.130 0.00 0.00 0.00 2.29
38 39 4.015872 AGAGTGCCGAATTTTTCCTGTA 57.984 40.909 0.00 0.00 0.00 2.74
39 40 2.863809 AGAGTGCCGAATTTTTCCTGT 58.136 42.857 0.00 0.00 0.00 4.00
40 41 4.253685 TCTAGAGTGCCGAATTTTTCCTG 58.746 43.478 0.00 0.00 0.00 3.86
41 42 4.223032 TCTCTAGAGTGCCGAATTTTTCCT 59.777 41.667 19.21 0.00 0.00 3.36
42 43 4.504858 TCTCTAGAGTGCCGAATTTTTCC 58.495 43.478 19.21 0.00 0.00 3.13
43 44 5.444745 CGTTCTCTAGAGTGCCGAATTTTTC 60.445 44.000 19.21 0.00 0.00 2.29
44 45 4.389077 CGTTCTCTAGAGTGCCGAATTTTT 59.611 41.667 19.21 0.00 0.00 1.94
45 46 3.927142 CGTTCTCTAGAGTGCCGAATTTT 59.073 43.478 19.21 0.00 0.00 1.82
46 47 3.192844 TCGTTCTCTAGAGTGCCGAATTT 59.807 43.478 19.21 0.00 0.00 1.82
47 48 2.753452 TCGTTCTCTAGAGTGCCGAATT 59.247 45.455 19.21 0.00 0.00 2.17
48 49 2.097791 GTCGTTCTCTAGAGTGCCGAAT 59.902 50.000 22.85 0.00 0.00 3.34
49 50 1.467734 GTCGTTCTCTAGAGTGCCGAA 59.532 52.381 22.85 9.20 0.00 4.30
50 51 1.085091 GTCGTTCTCTAGAGTGCCGA 58.915 55.000 19.21 19.46 0.00 5.54
51 52 0.099082 GGTCGTTCTCTAGAGTGCCG 59.901 60.000 19.21 17.75 0.00 5.69
52 53 1.465794 AGGTCGTTCTCTAGAGTGCC 58.534 55.000 19.21 13.98 0.00 5.01
53 54 2.229302 ACAAGGTCGTTCTCTAGAGTGC 59.771 50.000 19.21 11.92 0.00 4.40
54 55 3.502595 TCACAAGGTCGTTCTCTAGAGTG 59.497 47.826 19.21 9.97 0.00 3.51
55 56 3.502979 GTCACAAGGTCGTTCTCTAGAGT 59.497 47.826 19.21 0.00 0.00 3.24
56 57 3.119779 GGTCACAAGGTCGTTCTCTAGAG 60.120 52.174 13.98 13.98 0.00 2.43
57 58 2.818432 GGTCACAAGGTCGTTCTCTAGA 59.182 50.000 0.00 0.00 0.00 2.43
58 59 2.557056 TGGTCACAAGGTCGTTCTCTAG 59.443 50.000 0.00 0.00 0.00 2.43
59 60 2.589720 TGGTCACAAGGTCGTTCTCTA 58.410 47.619 0.00 0.00 0.00 2.43
60 61 1.410004 TGGTCACAAGGTCGTTCTCT 58.590 50.000 0.00 0.00 0.00 3.10
61 62 2.457366 ATGGTCACAAGGTCGTTCTC 57.543 50.000 0.00 0.00 0.00 2.87
62 63 3.070446 TGTTATGGTCACAAGGTCGTTCT 59.930 43.478 0.00 0.00 0.00 3.01
63 64 3.395639 TGTTATGGTCACAAGGTCGTTC 58.604 45.455 0.00 0.00 0.00 3.95
64 65 3.478857 TGTTATGGTCACAAGGTCGTT 57.521 42.857 0.00 0.00 0.00 3.85
65 66 3.695830 ATGTTATGGTCACAAGGTCGT 57.304 42.857 0.00 0.00 0.00 4.34
66 67 5.642063 AGTTAATGTTATGGTCACAAGGTCG 59.358 40.000 0.00 0.00 0.00 4.79
67 68 6.879458 AGAGTTAATGTTATGGTCACAAGGTC 59.121 38.462 0.00 0.00 0.00 3.85
68 69 6.779860 AGAGTTAATGTTATGGTCACAAGGT 58.220 36.000 0.00 0.00 0.00 3.50
69 70 7.362056 CCAAGAGTTAATGTTATGGTCACAAGG 60.362 40.741 0.00 0.00 0.00 3.61
70 71 7.174946 ACCAAGAGTTAATGTTATGGTCACAAG 59.825 37.037 0.00 0.00 34.78 3.16
71 72 7.001674 ACCAAGAGTTAATGTTATGGTCACAA 58.998 34.615 0.00 0.00 34.78 3.33
72 73 6.539173 ACCAAGAGTTAATGTTATGGTCACA 58.461 36.000 0.00 0.00 34.78 3.58
73 74 7.174253 TGAACCAAGAGTTAATGTTATGGTCAC 59.826 37.037 0.00 0.00 39.40 3.67
74 75 7.227873 TGAACCAAGAGTTAATGTTATGGTCA 58.772 34.615 0.00 0.00 39.40 4.02
75 76 7.681939 TGAACCAAGAGTTAATGTTATGGTC 57.318 36.000 0.00 0.00 39.40 4.02
76 77 9.396022 CTATGAACCAAGAGTTAATGTTATGGT 57.604 33.333 0.00 0.00 39.40 3.55
77 78 8.840321 CCTATGAACCAAGAGTTAATGTTATGG 58.160 37.037 0.00 0.00 39.40 2.74
78 79 8.840321 CCCTATGAACCAAGAGTTAATGTTATG 58.160 37.037 0.00 0.00 39.40 1.90
79 80 8.557450 ACCCTATGAACCAAGAGTTAATGTTAT 58.443 33.333 0.00 0.00 39.40 1.89
80 81 7.924541 ACCCTATGAACCAAGAGTTAATGTTA 58.075 34.615 0.00 0.00 39.40 2.41
81 82 6.790319 ACCCTATGAACCAAGAGTTAATGTT 58.210 36.000 0.00 0.00 39.40 2.71
82 83 6.388619 ACCCTATGAACCAAGAGTTAATGT 57.611 37.500 0.00 0.00 39.40 2.71
83 84 8.265055 TCTTACCCTATGAACCAAGAGTTAATG 58.735 37.037 0.00 0.00 39.40 1.90
84 85 8.388656 TCTTACCCTATGAACCAAGAGTTAAT 57.611 34.615 0.00 0.00 39.40 1.40
85 86 7.801893 TCTTACCCTATGAACCAAGAGTTAA 57.198 36.000 0.00 0.00 39.40 2.01
86 87 7.801893 TTCTTACCCTATGAACCAAGAGTTA 57.198 36.000 0.00 0.00 39.40 2.24
87 88 6.697641 TTCTTACCCTATGAACCAAGAGTT 57.302 37.500 0.00 0.00 43.07 3.01
88 89 6.893020 ATTCTTACCCTATGAACCAAGAGT 57.107 37.500 0.00 0.00 0.00 3.24
89 90 8.651389 TGATATTCTTACCCTATGAACCAAGAG 58.349 37.037 0.00 0.00 0.00 2.85
90 91 8.561536 TGATATTCTTACCCTATGAACCAAGA 57.438 34.615 0.00 0.00 0.00 3.02
93 94 9.837681 TCTATGATATTCTTACCCTATGAACCA 57.162 33.333 0.00 0.00 0.00 3.67
171 172 9.857656 ATCCTATACATCAAATGACACATCTTT 57.142 29.630 0.00 0.00 0.00 2.52
191 192 9.620259 GACTCAGTGGAAAAATTTCTATCCTAT 57.380 33.333 14.92 5.05 37.35 2.57
192 193 8.826765 AGACTCAGTGGAAAAATTTCTATCCTA 58.173 33.333 14.92 3.84 37.35 2.94
193 194 7.694093 AGACTCAGTGGAAAAATTTCTATCCT 58.306 34.615 14.92 0.00 37.35 3.24
194 195 7.929941 AGACTCAGTGGAAAAATTTCTATCC 57.070 36.000 5.91 9.55 37.35 2.59
195 196 9.877178 TCTAGACTCAGTGGAAAAATTTCTATC 57.123 33.333 5.91 0.00 37.35 2.08
202 203 9.965902 ACATTAATCTAGACTCAGTGGAAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
203 204 9.793259 AACATTAATCTAGACTCAGTGGAAAAA 57.207 29.630 0.00 0.00 0.00 1.94
204 205 9.793259 AAACATTAATCTAGACTCAGTGGAAAA 57.207 29.630 0.00 0.00 0.00 2.29
205 206 9.793259 AAAACATTAATCTAGACTCAGTGGAAA 57.207 29.630 0.00 0.00 0.00 3.13
206 207 9.793259 AAAAACATTAATCTAGACTCAGTGGAA 57.207 29.630 0.00 0.00 0.00 3.53
237 238 4.398319 ACCAATCCTTCACAGTGTAAAGG 58.602 43.478 18.12 18.12 40.80 3.11
238 239 5.048713 GGAACCAATCCTTCACAGTGTAAAG 60.049 44.000 0.00 0.00 45.56 1.85
239 240 4.825085 GGAACCAATCCTTCACAGTGTAAA 59.175 41.667 0.00 0.00 45.56 2.01
240 241 4.394729 GGAACCAATCCTTCACAGTGTAA 58.605 43.478 0.00 0.00 45.56 2.41
241 242 4.015872 GGAACCAATCCTTCACAGTGTA 57.984 45.455 0.00 0.00 45.56 2.90
242 243 2.863809 GGAACCAATCCTTCACAGTGT 58.136 47.619 0.00 0.00 45.56 3.55
252 253 4.220163 CCTACGTAGGATAGGAACCAATCC 59.780 50.000 33.93 0.00 46.75 3.01
253 254 5.388408 CCTACGTAGGATAGGAACCAATC 57.612 47.826 33.93 0.00 46.63 2.67
266 267 6.607004 AATGGATTCCTATTCCTACGTAGG 57.393 41.667 32.05 32.05 45.02 3.18
267 268 8.148351 TGAAAATGGATTCCTATTCCTACGTAG 58.852 37.037 15.92 15.92 34.17 3.51
268 269 7.929785 GTGAAAATGGATTCCTATTCCTACGTA 59.070 37.037 3.95 0.00 34.17 3.57
269 270 6.766467 GTGAAAATGGATTCCTATTCCTACGT 59.234 38.462 3.95 0.00 34.17 3.57
270 271 6.765989 TGTGAAAATGGATTCCTATTCCTACG 59.234 38.462 3.95 0.00 34.17 3.51
271 272 8.697507 ATGTGAAAATGGATTCCTATTCCTAC 57.302 34.615 3.95 2.84 34.17 3.18
273 274 7.449704 GCTATGTGAAAATGGATTCCTATTCCT 59.550 37.037 3.95 0.00 34.17 3.36
274 275 7.231317 TGCTATGTGAAAATGGATTCCTATTCC 59.769 37.037 3.95 2.17 0.00 3.01
275 276 8.169977 TGCTATGTGAAAATGGATTCCTATTC 57.830 34.615 3.95 6.52 0.00 1.75
276 277 8.537728 TTGCTATGTGAAAATGGATTCCTATT 57.462 30.769 3.95 0.00 0.00 1.73
277 278 8.537728 TTTGCTATGTGAAAATGGATTCCTAT 57.462 30.769 3.95 0.00 0.00 2.57
278 279 7.068593 CCTTTGCTATGTGAAAATGGATTCCTA 59.931 37.037 3.95 0.00 0.00 2.94
279 280 6.127253 CCTTTGCTATGTGAAAATGGATTCCT 60.127 38.462 3.95 0.00 0.00 3.36
280 281 6.044682 CCTTTGCTATGTGAAAATGGATTCC 58.955 40.000 0.00 0.00 0.00 3.01
281 282 6.044682 CCCTTTGCTATGTGAAAATGGATTC 58.955 40.000 0.00 0.00 0.00 2.52
282 283 5.627503 GCCCTTTGCTATGTGAAAATGGATT 60.628 40.000 0.00 0.00 36.87 3.01
283 284 4.141869 GCCCTTTGCTATGTGAAAATGGAT 60.142 41.667 0.00 0.00 36.87 3.41
284 285 3.195396 GCCCTTTGCTATGTGAAAATGGA 59.805 43.478 0.00 0.00 36.87 3.41
285 286 3.524541 GCCCTTTGCTATGTGAAAATGG 58.475 45.455 0.00 0.00 36.87 3.16
296 297 9.139940 GAAGAATTCCTTTTCAGCCCTTTGCTA 62.140 40.741 0.65 0.00 44.46 3.49
297 298 8.416002 GAAGAATTCCTTTTCAGCCCTTTGCT 62.416 42.308 0.65 0.00 46.33 3.91
298 299 3.007290 AGAATTCCTTTTCAGCCCTTTGC 59.993 43.478 0.65 0.00 41.71 3.68
299 300 4.879197 AGAATTCCTTTTCAGCCCTTTG 57.121 40.909 0.65 0.00 0.00 2.77
300 301 5.474578 GAAGAATTCCTTTTCAGCCCTTT 57.525 39.130 0.65 0.00 39.83 3.11
314 315 8.268605 AGGATAGGAGTTTTGTAGGAAGAATTC 58.731 37.037 0.00 0.00 46.67 2.17
315 316 8.164057 AGGATAGGAGTTTTGTAGGAAGAATT 57.836 34.615 0.00 0.00 0.00 2.17
316 317 7.757242 AGGATAGGAGTTTTGTAGGAAGAAT 57.243 36.000 0.00 0.00 0.00 2.40
317 318 7.569599 AAGGATAGGAGTTTTGTAGGAAGAA 57.430 36.000 0.00 0.00 0.00 2.52
318 319 7.569599 AAAGGATAGGAGTTTTGTAGGAAGA 57.430 36.000 0.00 0.00 0.00 2.87
319 320 8.759782 TCTAAAGGATAGGAGTTTTGTAGGAAG 58.240 37.037 0.00 0.00 0.00 3.46
320 321 8.674925 TCTAAAGGATAGGAGTTTTGTAGGAA 57.325 34.615 0.00 0.00 0.00 3.36
321 322 8.674925 TTCTAAAGGATAGGAGTTTTGTAGGA 57.325 34.615 0.00 0.00 0.00 2.94
322 323 9.907229 AATTCTAAAGGATAGGAGTTTTGTAGG 57.093 33.333 0.00 0.00 0.00 3.18
324 325 9.901172 GGAATTCTAAAGGATAGGAGTTTTGTA 57.099 33.333 5.23 0.00 0.00 2.41
325 326 8.615705 AGGAATTCTAAAGGATAGGAGTTTTGT 58.384 33.333 5.23 0.00 0.00 2.83
328 329 9.280456 TGTAGGAATTCTAAAGGATAGGAGTTT 57.720 33.333 5.23 0.00 0.00 2.66
329 330 8.855804 TGTAGGAATTCTAAAGGATAGGAGTT 57.144 34.615 5.23 0.00 0.00 3.01
330 331 8.855804 TTGTAGGAATTCTAAAGGATAGGAGT 57.144 34.615 5.23 0.00 0.00 3.85
336 337 9.997172 AGGAATTTTGTAGGAATTCTAAAGGAT 57.003 29.630 5.23 0.00 41.19 3.24
340 341 9.185680 GCCTAGGAATTTTGTAGGAATTCTAAA 57.814 33.333 14.75 0.29 41.19 1.85
341 342 7.778382 GGCCTAGGAATTTTGTAGGAATTCTAA 59.222 37.037 14.75 0.00 41.19 2.10
342 343 7.128883 AGGCCTAGGAATTTTGTAGGAATTCTA 59.871 37.037 14.75 0.00 41.19 2.10
343 344 6.068794 AGGCCTAGGAATTTTGTAGGAATTCT 60.069 38.462 14.75 0.00 41.19 2.40
344 345 6.129874 AGGCCTAGGAATTTTGTAGGAATTC 58.870 40.000 14.75 0.00 40.88 2.17
345 346 6.092346 AGGCCTAGGAATTTTGTAGGAATT 57.908 37.500 14.75 0.00 36.19 2.17
346 347 5.734031 AGGCCTAGGAATTTTGTAGGAAT 57.266 39.130 14.75 0.00 36.19 3.01
347 348 5.530176 AAGGCCTAGGAATTTTGTAGGAA 57.470 39.130 14.75 0.00 36.19 3.36
348 349 6.248569 CTAAGGCCTAGGAATTTTGTAGGA 57.751 41.667 14.75 0.00 36.19 2.94
361 362 7.421087 AGTAGACTTTAAACCTAAGGCCTAG 57.579 40.000 5.16 3.78 30.61 3.02
363 364 7.991647 ATAGTAGACTTTAAACCTAAGGCCT 57.008 36.000 0.00 0.00 30.61 5.19
380 381 9.678941 CGTTTCTCTGCATGTAAATATAGTAGA 57.321 33.333 0.00 0.00 0.00 2.59
381 382 9.678941 TCGTTTCTCTGCATGTAAATATAGTAG 57.321 33.333 0.00 0.00 0.00 2.57
382 383 9.678941 CTCGTTTCTCTGCATGTAAATATAGTA 57.321 33.333 0.00 0.00 0.00 1.82
383 384 7.169982 GCTCGTTTCTCTGCATGTAAATATAGT 59.830 37.037 0.00 0.00 0.00 2.12
384 385 7.359598 GGCTCGTTTCTCTGCATGTAAATATAG 60.360 40.741 0.00 0.00 0.00 1.31
385 386 6.423905 GGCTCGTTTCTCTGCATGTAAATATA 59.576 38.462 0.00 0.00 0.00 0.86
386 387 5.237344 GGCTCGTTTCTCTGCATGTAAATAT 59.763 40.000 0.00 0.00 0.00 1.28
387 388 4.570772 GGCTCGTTTCTCTGCATGTAAATA 59.429 41.667 0.00 0.00 0.00 1.40
388 389 3.375299 GGCTCGTTTCTCTGCATGTAAAT 59.625 43.478 0.00 0.00 0.00 1.40
389 390 2.742053 GGCTCGTTTCTCTGCATGTAAA 59.258 45.455 0.00 0.00 0.00 2.01
390 391 2.028112 AGGCTCGTTTCTCTGCATGTAA 60.028 45.455 0.00 0.00 0.00 2.41
391 392 1.550524 AGGCTCGTTTCTCTGCATGTA 59.449 47.619 0.00 0.00 0.00 2.29
392 393 0.322975 AGGCTCGTTTCTCTGCATGT 59.677 50.000 0.00 0.00 0.00 3.21
393 394 1.005340 GAGGCTCGTTTCTCTGCATG 58.995 55.000 0.00 0.00 0.00 4.06
394 395 0.107945 GGAGGCTCGTTTCTCTGCAT 60.108 55.000 8.69 0.00 0.00 3.96
395 396 1.293498 GGAGGCTCGTTTCTCTGCA 59.707 57.895 8.69 0.00 0.00 4.41
396 397 1.448717 GGGAGGCTCGTTTCTCTGC 60.449 63.158 8.69 0.00 0.00 4.26
397 398 0.108424 CTGGGAGGCTCGTTTCTCTG 60.108 60.000 8.69 0.00 0.00 3.35
398 399 0.543174 ACTGGGAGGCTCGTTTCTCT 60.543 55.000 8.69 0.00 0.00 3.10
399 400 0.321996 AACTGGGAGGCTCGTTTCTC 59.678 55.000 8.69 0.00 0.00 2.87
400 401 0.321996 GAACTGGGAGGCTCGTTTCT 59.678 55.000 8.69 0.00 0.00 2.52
401 402 1.014564 CGAACTGGGAGGCTCGTTTC 61.015 60.000 8.69 7.11 0.00 2.78
402 403 1.004918 CGAACTGGGAGGCTCGTTT 60.005 57.895 8.69 0.00 0.00 3.60
403 404 2.657237 CGAACTGGGAGGCTCGTT 59.343 61.111 8.69 7.20 0.00 3.85
404 405 3.382832 CCGAACTGGGAGGCTCGT 61.383 66.667 8.69 0.00 0.00 4.18
405 406 2.943978 AACCGAACTGGGAGGCTCG 61.944 63.158 8.69 0.00 44.64 5.03
406 407 1.376037 CAACCGAACTGGGAGGCTC 60.376 63.158 5.78 5.78 44.64 4.70
407 408 1.415672 TTCAACCGAACTGGGAGGCT 61.416 55.000 0.00 0.00 44.64 4.58
408 409 0.536460 TTTCAACCGAACTGGGAGGC 60.536 55.000 0.00 0.00 44.64 4.70
409 410 1.975660 TTTTCAACCGAACTGGGAGG 58.024 50.000 0.00 0.00 44.64 4.30
410 411 4.584327 AAATTTTCAACCGAACTGGGAG 57.416 40.909 0.00 0.00 44.64 4.30
411 412 5.010213 CCTAAAATTTTCAACCGAACTGGGA 59.990 40.000 6.72 0.00 44.64 4.37
412 413 5.010213 TCCTAAAATTTTCAACCGAACTGGG 59.990 40.000 6.72 0.00 44.64 4.45
413 414 6.079424 TCCTAAAATTTTCAACCGAACTGG 57.921 37.500 6.72 0.00 46.41 4.00
414 415 7.145323 ACATCCTAAAATTTTCAACCGAACTG 58.855 34.615 6.72 0.00 0.00 3.16
415 416 7.284919 ACATCCTAAAATTTTCAACCGAACT 57.715 32.000 6.72 0.00 0.00 3.01
416 417 7.940178 AACATCCTAAAATTTTCAACCGAAC 57.060 32.000 6.72 0.00 0.00 3.95
417 418 8.198109 TCAAACATCCTAAAATTTTCAACCGAA 58.802 29.630 6.72 0.00 0.00 4.30
418 419 7.717568 TCAAACATCCTAAAATTTTCAACCGA 58.282 30.769 6.72 0.00 0.00 4.69
419 420 7.938563 TCAAACATCCTAAAATTTTCAACCG 57.061 32.000 6.72 0.00 0.00 4.44
422 423 9.282569 CCCAATCAAACATCCTAAAATTTTCAA 57.717 29.630 6.72 0.00 0.00 2.69
423 424 8.654997 TCCCAATCAAACATCCTAAAATTTTCA 58.345 29.630 6.72 0.00 0.00 2.69
424 425 8.935844 GTCCCAATCAAACATCCTAAAATTTTC 58.064 33.333 6.72 0.00 0.00 2.29
425 426 7.602265 CGTCCCAATCAAACATCCTAAAATTTT 59.398 33.333 8.75 8.75 0.00 1.82
426 427 7.096551 CGTCCCAATCAAACATCCTAAAATTT 58.903 34.615 0.00 0.00 0.00 1.82
427 428 6.210584 ACGTCCCAATCAAACATCCTAAAATT 59.789 34.615 0.00 0.00 0.00 1.82
428 429 5.714806 ACGTCCCAATCAAACATCCTAAAAT 59.285 36.000 0.00 0.00 0.00 1.82
429 430 5.074115 ACGTCCCAATCAAACATCCTAAAA 58.926 37.500 0.00 0.00 0.00 1.52
430 431 4.658063 ACGTCCCAATCAAACATCCTAAA 58.342 39.130 0.00 0.00 0.00 1.85
431 432 4.295141 ACGTCCCAATCAAACATCCTAA 57.705 40.909 0.00 0.00 0.00 2.69
432 433 3.992943 ACGTCCCAATCAAACATCCTA 57.007 42.857 0.00 0.00 0.00 2.94
433 434 2.879103 ACGTCCCAATCAAACATCCT 57.121 45.000 0.00 0.00 0.00 3.24
434 435 5.124776 TGATTTACGTCCCAATCAAACATCC 59.875 40.000 12.84 0.00 36.64 3.51
435 436 6.189677 TGATTTACGTCCCAATCAAACATC 57.810 37.500 12.84 0.00 36.64 3.06
436 437 6.582677 TTGATTTACGTCCCAATCAAACAT 57.417 33.333 20.12 0.00 43.32 2.71
441 442 5.943416 AGAACATTGATTTACGTCCCAATCA 59.057 36.000 11.70 11.70 37.58 2.57
442 443 6.436843 AGAACATTGATTTACGTCCCAATC 57.563 37.500 0.00 0.00 0.00 2.67
443 444 9.052759 GTATAGAACATTGATTTACGTCCCAAT 57.947 33.333 0.00 0.00 0.00 3.16
444 445 7.496591 GGTATAGAACATTGATTTACGTCCCAA 59.503 37.037 0.00 0.00 0.00 4.12
445 446 6.987992 GGTATAGAACATTGATTTACGTCCCA 59.012 38.462 0.00 0.00 0.00 4.37
446 447 6.145048 CGGTATAGAACATTGATTTACGTCCC 59.855 42.308 0.00 0.00 0.00 4.46
447 448 6.346359 GCGGTATAGAACATTGATTTACGTCC 60.346 42.308 0.00 0.00 0.00 4.79
448 449 6.199531 TGCGGTATAGAACATTGATTTACGTC 59.800 38.462 0.00 0.00 0.00 4.34
449 450 6.044046 TGCGGTATAGAACATTGATTTACGT 58.956 36.000 0.00 0.00 0.00 3.57
450 451 6.419710 TCTGCGGTATAGAACATTGATTTACG 59.580 38.462 0.00 0.00 0.00 3.18
451 452 7.709269 TCTGCGGTATAGAACATTGATTTAC 57.291 36.000 0.00 0.00 0.00 2.01
452 453 8.902540 AATCTGCGGTATAGAACATTGATTTA 57.097 30.769 0.00 0.00 0.00 1.40
453 454 7.041098 GGAATCTGCGGTATAGAACATTGATTT 60.041 37.037 0.00 0.00 0.00 2.17
454 455 6.428159 GGAATCTGCGGTATAGAACATTGATT 59.572 38.462 0.00 0.00 0.00 2.57
455 456 5.934625 GGAATCTGCGGTATAGAACATTGAT 59.065 40.000 0.00 0.00 0.00 2.57
456 457 5.163353 TGGAATCTGCGGTATAGAACATTGA 60.163 40.000 0.00 0.00 0.00 2.57
457 458 5.056480 TGGAATCTGCGGTATAGAACATTG 58.944 41.667 0.00 0.00 0.00 2.82
458 459 5.290493 TGGAATCTGCGGTATAGAACATT 57.710 39.130 0.00 0.00 0.00 2.71
459 460 4.955811 TGGAATCTGCGGTATAGAACAT 57.044 40.909 0.00 0.00 0.00 2.71
460 461 4.955811 ATGGAATCTGCGGTATAGAACA 57.044 40.909 0.00 0.00 0.00 3.18
461 462 6.619801 AAAATGGAATCTGCGGTATAGAAC 57.380 37.500 0.00 0.00 0.00 3.01
502 503 9.406113 AGTCAGTAACTACTAATAAACCGAGAT 57.594 33.333 0.00 0.00 36.07 2.75
503 504 8.798859 AGTCAGTAACTACTAATAAACCGAGA 57.201 34.615 0.00 0.00 36.07 4.04
504 505 8.671921 TGAGTCAGTAACTACTAATAAACCGAG 58.328 37.037 0.00 0.00 38.74 4.63
505 506 8.454106 GTGAGTCAGTAACTACTAATAAACCGA 58.546 37.037 0.00 0.00 38.74 4.69
506 507 8.457261 AGTGAGTCAGTAACTACTAATAAACCG 58.543 37.037 0.00 0.00 38.74 4.44
507 508 9.570488 CAGTGAGTCAGTAACTACTAATAAACC 57.430 37.037 0.00 0.00 38.74 3.27
508 509 9.570488 CCAGTGAGTCAGTAACTACTAATAAAC 57.430 37.037 0.00 0.00 38.74 2.01
509 510 8.746530 CCCAGTGAGTCAGTAACTACTAATAAA 58.253 37.037 0.00 0.00 38.74 1.40
510 511 7.892241 ACCCAGTGAGTCAGTAACTACTAATAA 59.108 37.037 0.00 0.00 38.74 1.40
511 512 7.408543 ACCCAGTGAGTCAGTAACTACTAATA 58.591 38.462 0.00 0.00 38.74 0.98
512 513 6.254522 ACCCAGTGAGTCAGTAACTACTAAT 58.745 40.000 0.00 0.00 38.74 1.73
513 514 5.638133 ACCCAGTGAGTCAGTAACTACTAA 58.362 41.667 0.00 0.00 38.74 2.24
514 515 5.251764 GACCCAGTGAGTCAGTAACTACTA 58.748 45.833 0.00 0.00 38.74 1.82
515 516 4.080687 GACCCAGTGAGTCAGTAACTACT 58.919 47.826 0.00 0.00 38.74 2.57
516 517 3.119919 CGACCCAGTGAGTCAGTAACTAC 60.120 52.174 5.57 0.00 38.74 2.73
517 518 3.079578 CGACCCAGTGAGTCAGTAACTA 58.920 50.000 5.57 0.00 38.74 2.24
518 519 1.887198 CGACCCAGTGAGTCAGTAACT 59.113 52.381 5.57 0.00 42.42 2.24
519 520 1.612463 ACGACCCAGTGAGTCAGTAAC 59.388 52.381 5.57 0.00 33.70 2.50
520 521 1.611977 CACGACCCAGTGAGTCAGTAA 59.388 52.381 5.57 0.00 44.43 2.24
521 522 1.244816 CACGACCCAGTGAGTCAGTA 58.755 55.000 5.57 0.00 44.43 2.74
522 523 2.041976 CACGACCCAGTGAGTCAGT 58.958 57.895 5.57 0.00 44.43 3.41
523 524 1.373497 GCACGACCCAGTGAGTCAG 60.373 63.158 5.57 0.93 44.43 3.51
524 525 0.538746 TAGCACGACCCAGTGAGTCA 60.539 55.000 5.57 0.00 44.43 3.41
525 526 0.818296 ATAGCACGACCCAGTGAGTC 59.182 55.000 0.88 0.00 44.43 3.36
526 527 2.139323 TATAGCACGACCCAGTGAGT 57.861 50.000 0.88 0.00 44.43 3.41
527 528 2.887783 AGATATAGCACGACCCAGTGAG 59.112 50.000 0.88 0.00 44.43 3.51
528 529 2.885266 GAGATATAGCACGACCCAGTGA 59.115 50.000 0.88 0.00 44.43 3.41
529 530 2.623416 TGAGATATAGCACGACCCAGTG 59.377 50.000 0.00 0.00 44.47 3.66
530 531 2.887783 CTGAGATATAGCACGACCCAGT 59.112 50.000 0.00 0.00 0.00 4.00
531 532 3.149981 TCTGAGATATAGCACGACCCAG 58.850 50.000 0.00 0.00 0.00 4.45
532 533 3.223674 TCTGAGATATAGCACGACCCA 57.776 47.619 0.00 0.00 0.00 4.51
533 534 4.489810 CAATCTGAGATATAGCACGACCC 58.510 47.826 0.00 0.00 0.00 4.46
534 535 4.489810 CCAATCTGAGATATAGCACGACC 58.510 47.826 0.00 0.00 0.00 4.79
535 536 4.218635 TCCCAATCTGAGATATAGCACGAC 59.781 45.833 0.00 0.00 0.00 4.34
536 537 4.218635 GTCCCAATCTGAGATATAGCACGA 59.781 45.833 0.00 0.00 0.00 4.35
537 538 4.021981 TGTCCCAATCTGAGATATAGCACG 60.022 45.833 0.00 0.00 0.00 5.34
538 539 5.474578 TGTCCCAATCTGAGATATAGCAC 57.525 43.478 0.00 0.00 0.00 4.40
539 540 5.570236 GCATGTCCCAATCTGAGATATAGCA 60.570 44.000 0.00 0.00 0.00 3.49
540 541 4.874966 GCATGTCCCAATCTGAGATATAGC 59.125 45.833 0.00 0.00 0.00 2.97
541 542 5.046087 TGGCATGTCCCAATCTGAGATATAG 60.046 44.000 0.00 0.00 30.32 1.31
542 543 4.845796 TGGCATGTCCCAATCTGAGATATA 59.154 41.667 0.00 0.00 30.32 0.86
543 544 3.654321 TGGCATGTCCCAATCTGAGATAT 59.346 43.478 0.00 0.00 30.32 1.63
544 545 3.047857 TGGCATGTCCCAATCTGAGATA 58.952 45.455 0.00 0.00 30.32 1.98
545 546 1.848388 TGGCATGTCCCAATCTGAGAT 59.152 47.619 0.00 0.00 30.32 2.75
546 547 1.065199 GTGGCATGTCCCAATCTGAGA 60.065 52.381 0.00 0.00 36.46 3.27
547 548 1.064906 AGTGGCATGTCCCAATCTGAG 60.065 52.381 0.00 0.00 36.46 3.35
548 549 0.994247 AGTGGCATGTCCCAATCTGA 59.006 50.000 0.00 0.00 36.46 3.27
549 550 1.100510 CAGTGGCATGTCCCAATCTG 58.899 55.000 0.00 0.00 36.46 2.90
550 551 0.682209 GCAGTGGCATGTCCCAATCT 60.682 55.000 0.00 0.00 40.72 2.40
551 552 0.682209 AGCAGTGGCATGTCCCAATC 60.682 55.000 0.00 0.00 44.61 2.67
552 553 0.251922 AAGCAGTGGCATGTCCCAAT 60.252 50.000 0.00 0.00 44.61 3.16
553 554 1.153524 AAGCAGTGGCATGTCCCAA 59.846 52.632 0.00 0.00 44.61 4.12
554 555 1.604308 CAAGCAGTGGCATGTCCCA 60.604 57.895 0.00 0.00 44.61 4.37
555 556 0.682209 ATCAAGCAGTGGCATGTCCC 60.682 55.000 0.00 0.00 44.61 4.46
556 557 1.135199 CAATCAAGCAGTGGCATGTCC 60.135 52.381 0.00 0.00 44.61 4.02
557 558 1.135199 CCAATCAAGCAGTGGCATGTC 60.135 52.381 0.00 0.00 44.61 3.06
558 559 0.892755 CCAATCAAGCAGTGGCATGT 59.107 50.000 0.00 0.00 44.61 3.21
559 560 0.174845 CCCAATCAAGCAGTGGCATG 59.825 55.000 0.00 0.00 44.61 4.06
560 561 0.040058 TCCCAATCAAGCAGTGGCAT 59.960 50.000 0.00 0.00 44.61 4.40
561 562 0.895100 GTCCCAATCAAGCAGTGGCA 60.895 55.000 0.00 0.00 44.61 4.92
562 563 0.895100 TGTCCCAATCAAGCAGTGGC 60.895 55.000 0.00 0.00 39.10 5.01
563 564 1.843368 ATGTCCCAATCAAGCAGTGG 58.157 50.000 0.00 0.00 40.24 4.00
564 565 5.125900 TGATTTATGTCCCAATCAAGCAGTG 59.874 40.000 0.00 0.00 36.64 3.66
565 566 5.263599 TGATTTATGTCCCAATCAAGCAGT 58.736 37.500 0.00 0.00 36.64 4.40
566 567 5.840243 TGATTTATGTCCCAATCAAGCAG 57.160 39.130 0.00 0.00 36.64 4.24
571 572 7.959658 AGAACATTGATTTATGTCCCAATCA 57.040 32.000 0.00 0.00 37.76 2.57
574 575 9.349713 GGTATAGAACATTGATTTATGTCCCAA 57.650 33.333 0.00 0.00 37.76 4.12
575 576 8.723365 AGGTATAGAACATTGATTTATGTCCCA 58.277 33.333 0.00 0.00 37.76 4.37
576 577 9.220767 GAGGTATAGAACATTGATTTATGTCCC 57.779 37.037 0.00 0.00 37.76 4.46
577 578 9.778741 TGAGGTATAGAACATTGATTTATGTCC 57.221 33.333 0.00 0.00 37.76 4.02
611 612 4.320870 GAACGGAGGGAGTACATGAAAAA 58.679 43.478 0.00 0.00 0.00 1.94
612 613 3.307199 GGAACGGAGGGAGTACATGAAAA 60.307 47.826 0.00 0.00 0.00 2.29
613 614 2.235402 GGAACGGAGGGAGTACATGAAA 59.765 50.000 0.00 0.00 0.00 2.69
614 615 1.829222 GGAACGGAGGGAGTACATGAA 59.171 52.381 0.00 0.00 0.00 2.57
615 616 1.006758 AGGAACGGAGGGAGTACATGA 59.993 52.381 0.00 0.00 0.00 3.07
616 617 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
617 618 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
618 619 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
619 620 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
620 621 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
621 622 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
622 623 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
623 624 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
624 625 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
625 626 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
646 647 9.801873 CTCCAACTTGTTGAAATCTTTAGAAAA 57.198 29.630 14.30 0.00 0.00 2.29
647 648 7.920682 GCTCCAACTTGTTGAAATCTTTAGAAA 59.079 33.333 14.30 0.00 0.00 2.52
648 649 7.068103 TGCTCCAACTTGTTGAAATCTTTAGAA 59.932 33.333 14.30 0.00 0.00 2.10
649 650 6.545666 TGCTCCAACTTGTTGAAATCTTTAGA 59.454 34.615 14.30 0.41 0.00 2.10
650 651 6.738114 TGCTCCAACTTGTTGAAATCTTTAG 58.262 36.000 14.30 0.00 0.00 1.85
651 652 6.707440 TGCTCCAACTTGTTGAAATCTTTA 57.293 33.333 14.30 0.00 0.00 1.85
652 653 5.596836 TGCTCCAACTTGTTGAAATCTTT 57.403 34.783 14.30 0.00 0.00 2.52
653 654 5.596836 TTGCTCCAACTTGTTGAAATCTT 57.403 34.783 14.30 0.00 0.00 2.40
654 655 5.596836 TTTGCTCCAACTTGTTGAAATCT 57.403 34.783 14.30 0.00 0.00 2.40
655 656 6.479660 TCATTTTGCTCCAACTTGTTGAAATC 59.520 34.615 14.30 2.65 0.00 2.17
656 657 6.347696 TCATTTTGCTCCAACTTGTTGAAAT 58.652 32.000 14.30 8.96 0.00 2.17
657 658 5.728471 TCATTTTGCTCCAACTTGTTGAAA 58.272 33.333 14.30 7.26 0.00 2.69
658 659 5.105392 ACTCATTTTGCTCCAACTTGTTGAA 60.105 36.000 14.30 1.12 0.00 2.69
659 660 4.402155 ACTCATTTTGCTCCAACTTGTTGA 59.598 37.500 14.30 1.35 0.00 3.18
660 661 4.505191 CACTCATTTTGCTCCAACTTGTTG 59.495 41.667 6.52 6.52 0.00 3.33
661 662 4.402155 TCACTCATTTTGCTCCAACTTGTT 59.598 37.500 0.00 0.00 0.00 2.83
662 663 3.953612 TCACTCATTTTGCTCCAACTTGT 59.046 39.130 0.00 0.00 0.00 3.16
663 664 4.572985 TCACTCATTTTGCTCCAACTTG 57.427 40.909 0.00 0.00 0.00 3.16
664 665 5.537674 AGATTCACTCATTTTGCTCCAACTT 59.462 36.000 0.00 0.00 0.00 2.66
665 666 5.075493 AGATTCACTCATTTTGCTCCAACT 58.925 37.500 0.00 0.00 0.00 3.16
666 667 5.382618 AGATTCACTCATTTTGCTCCAAC 57.617 39.130 0.00 0.00 0.00 3.77
667 668 6.240894 AGTAGATTCACTCATTTTGCTCCAA 58.759 36.000 0.00 0.00 0.00 3.53
668 669 5.809001 AGTAGATTCACTCATTTTGCTCCA 58.191 37.500 0.00 0.00 0.00 3.86
669 670 6.112058 AGAGTAGATTCACTCATTTTGCTCC 58.888 40.000 14.52 0.00 46.15 4.70
670 671 7.608308 AAGAGTAGATTCACTCATTTTGCTC 57.392 36.000 14.52 0.00 46.15 4.26
671 672 7.992754 AAAGAGTAGATTCACTCATTTTGCT 57.007 32.000 14.52 0.00 46.15 3.91
702 703 9.081204 ACTACCACATACGGATGTATATAAACA 57.919 33.333 14.23 0.00 44.82 2.83
703 704 9.565213 GACTACCACATACGGATGTATATAAAC 57.435 37.037 14.23 0.00 44.82 2.01
704 705 9.524496 AGACTACCACATACGGATGTATATAAA 57.476 33.333 14.23 0.00 44.82 1.40
707 708 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
708 709 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
709 710 8.304596 CAAATAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
710 711 7.503230 TCAAATAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
712 713 6.745116 TCAAATAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
713 714 6.971726 TCAAATAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
714 715 6.778834 TTCAAATAGACTACCACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
715 716 7.207383 TCATTCAAATAGACTACCACATACGG 58.793 38.462 0.00 0.00 0.00 4.02
716 717 8.642908 TTCATTCAAATAGACTACCACATACG 57.357 34.615 0.00 0.00 0.00 3.06
719 720 9.911788 AGATTTCATTCAAATAGACTACCACAT 57.088 29.630 0.00 0.00 34.60 3.21
720 721 9.383519 GAGATTTCATTCAAATAGACTACCACA 57.616 33.333 0.00 0.00 34.60 4.17
721 722 9.606631 AGAGATTTCATTCAAATAGACTACCAC 57.393 33.333 0.00 0.00 34.60 4.16
749 750 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
750 751 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
751 752 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
752 753 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
753 754 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
754 755 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
759 760 9.892444 TTGATATACTCCCTCTGTTCCTAAATA 57.108 33.333 0.00 0.00 0.00 1.40
760 761 8.798975 TTGATATACTCCCTCTGTTCCTAAAT 57.201 34.615 0.00 0.00 0.00 1.40
761 762 8.618240 TTTGATATACTCCCTCTGTTCCTAAA 57.382 34.615 0.00 0.00 0.00 1.85
762 763 8.483758 GTTTTGATATACTCCCTCTGTTCCTAA 58.516 37.037 0.00 0.00 0.00 2.69
763 764 7.622081 TGTTTTGATATACTCCCTCTGTTCCTA 59.378 37.037 0.00 0.00 0.00 2.94
764 765 6.443849 TGTTTTGATATACTCCCTCTGTTCCT 59.556 38.462 0.00 0.00 0.00 3.36
765 766 6.650120 TGTTTTGATATACTCCCTCTGTTCC 58.350 40.000 0.00 0.00 0.00 3.62
766 767 8.561738 TTTGTTTTGATATACTCCCTCTGTTC 57.438 34.615 0.00 0.00 0.00 3.18
767 768 8.383175 TCTTTGTTTTGATATACTCCCTCTGTT 58.617 33.333 0.00 0.00 0.00 3.16
768 769 7.918076 TCTTTGTTTTGATATACTCCCTCTGT 58.082 34.615 0.00 0.00 0.00 3.41
769 770 8.792830 TTCTTTGTTTTGATATACTCCCTCTG 57.207 34.615 0.00 0.00 0.00 3.35
806 807 2.695666 ACACAGTGAGTCAGTACTGCTT 59.304 45.455 18.45 8.28 46.27 3.91
833 835 2.746803 GGCCGTCGAAATTGACCCG 61.747 63.158 0.00 0.00 35.40 5.28
872 874 3.042733 GCCCATGGACGGATGGACA 62.043 63.158 15.22 0.00 45.24 4.02
910 912 1.342672 ACTTGTGGTCCGGGTTGAGT 61.343 55.000 0.00 0.00 0.00 3.41
977 981 1.043022 GGAAGGCCCCTGCAATATTG 58.957 55.000 11.27 11.27 40.13 1.90
1276 1280 3.138930 GAGTGCTCGCCTCGCCATA 62.139 63.158 0.00 0.00 0.00 2.74
1365 1369 4.316823 ACCAGGTCCCTGCTCGGA 62.317 66.667 7.87 0.00 42.35 4.55
1515 1519 7.543172 CCAAACATAACCTGATCATGAAACAAG 59.457 37.037 0.00 0.00 0.00 3.16
1881 1885 2.904866 GGCGTCAGGTGGTTTGCA 60.905 61.111 0.00 0.00 0.00 4.08
1917 1921 0.603569 TCTTCTCTGAACGGCTGGTC 59.396 55.000 2.72 2.72 0.00 4.02
2477 2481 1.080093 CGCTTCTTACCGAGCACCA 60.080 57.895 0.00 0.00 0.00 4.17
2531 2535 9.559732 ACTTTGCAATCACATTAGCTATACATA 57.440 29.630 0.00 0.00 0.00 2.29
2576 2580 0.470833 AGGAGATGTAGGGCGCTGAT 60.471 55.000 14.51 5.16 0.00 2.90
2750 2779 2.037772 CCAGCTCTTCTGTAGTGTTGGT 59.962 50.000 9.84 0.00 41.27 3.67
2790 2862 0.729140 GGAAACGGCACAATCGCTTG 60.729 55.000 0.00 0.00 38.39 4.01
2791 2863 1.169661 TGGAAACGGCACAATCGCTT 61.170 50.000 0.00 0.00 0.00 4.68
2857 2937 0.607217 TGAGCTGACCCTGCATTGTG 60.607 55.000 0.00 0.00 0.00 3.33
2900 2980 0.471971 GGCCAGGCTCCATCCTAGTA 60.472 60.000 12.43 0.00 33.95 1.82
3039 3268 6.993786 AAAGAAAGCTGCTACCTAGAAATC 57.006 37.500 0.90 0.00 0.00 2.17
3114 3403 5.128919 GGTTATGCTTGATCTTCATCCTGT 58.871 41.667 0.00 0.00 0.00 4.00
3115 3404 5.128205 TGGTTATGCTTGATCTTCATCCTG 58.872 41.667 0.00 0.00 0.00 3.86
3124 3413 3.070018 CGATCCCTGGTTATGCTTGATC 58.930 50.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.