Multiple sequence alignment - TraesCS3D01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G286200 chr3D 100.000 6311 0 0 1 6311 395054912 395061222 0.000000e+00 11655.0
1 TraesCS3D01G286200 chr3D 94.375 160 8 1 1 160 579956570 579956412 1.760000e-60 244.0
2 TraesCS3D01G286200 chr3D 88.820 161 11 4 1 156 532168175 532168333 2.320000e-44 191.0
3 TraesCS3D01G286200 chr3D 89.474 76 8 0 211 286 126399635 126399560 5.210000e-16 97.1
4 TraesCS3D01G286200 chr3D 85.333 75 5 5 4862 4933 613746552 613746623 8.780000e-09 73.1
5 TraesCS3D01G286200 chr3A 87.976 3152 230 56 3222 6311 514559977 514563041 0.000000e+00 3583.0
6 TraesCS3D01G286200 chr3A 92.010 1915 69 31 705 2539 514557428 514559338 0.000000e+00 2612.0
7 TraesCS3D01G286200 chr3A 93.254 504 17 7 2613 3102 514559483 514559983 0.000000e+00 726.0
8 TraesCS3D01G286200 chr3A 84.301 465 58 10 3564 4025 18852744 18853196 2.090000e-119 440.0
9 TraesCS3D01G286200 chr3A 84.301 465 58 9 3564 4025 18871123 18871575 2.090000e-119 440.0
10 TraesCS3D01G286200 chr3A 85.358 321 47 0 157 477 514555492 514555812 3.650000e-87 333.0
11 TraesCS3D01G286200 chr3A 90.000 140 13 1 4157 4295 18853276 18853415 5.030000e-41 180.0
12 TraesCS3D01G286200 chr3A 90.000 140 13 1 4157 4295 18871655 18871794 5.030000e-41 180.0
13 TraesCS3D01G286200 chr3A 88.889 108 8 2 610 713 514556089 514556196 5.130000e-26 130.0
14 TraesCS3D01G286200 chr3A 85.333 75 5 5 4862 4933 749413884 749413955 8.780000e-09 73.1
15 TraesCS3D01G286200 chr3B 91.411 1828 81 28 492 2280 519765272 519767062 0.000000e+00 2436.0
16 TraesCS3D01G286200 chr3B 93.937 1105 57 7 3247 4348 519767863 519768960 0.000000e+00 1661.0
17 TraesCS3D01G286200 chr3B 92.406 1093 57 12 4377 5451 519768956 519770040 0.000000e+00 1535.0
18 TraesCS3D01G286200 chr3B 88.610 439 40 5 2674 3102 519767414 519767852 5.600000e-145 525.0
19 TraesCS3D01G286200 chr3B 93.487 261 15 2 2283 2543 519767101 519767359 2.760000e-103 387.0
20 TraesCS3D01G286200 chr3B 88.776 98 6 4 2535 2628 686352332 686352236 1.440000e-21 115.0
21 TraesCS3D01G286200 chr3B 89.130 92 6 3 2539 2627 407184978 407184888 1.860000e-20 111.0
22 TraesCS3D01G286200 chr3B 90.244 82 4 3 3127 3205 669921187 669921267 3.110000e-18 104.0
23 TraesCS3D01G286200 chr3B 85.135 74 7 2 4862 4933 822982868 822982939 8.780000e-09 73.1
24 TraesCS3D01G286200 chr2D 86.114 821 98 7 5483 6291 14520918 14520102 0.000000e+00 870.0
25 TraesCS3D01G286200 chr2D 79.127 733 130 17 5486 6201 536988616 536989342 9.510000e-133 484.0
26 TraesCS3D01G286200 chr2D 91.925 161 12 1 1 160 186653118 186652958 2.290000e-54 224.0
27 TraesCS3D01G286200 chr2D 87.654 162 15 4 1 158 154827304 154827144 3.890000e-42 183.0
28 TraesCS3D01G286200 chr2D 91.429 70 5 1 3127 3195 378756781 378756850 1.870000e-15 95.3
29 TraesCS3D01G286200 chr5D 84.878 820 110 7 5487 6293 354720614 354721432 0.000000e+00 815.0
30 TraesCS3D01G286200 chr5D 88.119 101 7 3 2529 2624 521630404 521630304 1.440000e-21 115.0
31 TraesCS3D01G286200 chr5D 89.247 93 6 2 2535 2624 504792924 504793015 5.170000e-21 113.0
32 TraesCS3D01G286200 chr5D 93.939 66 1 2 3131 3195 408976701 408976764 5.210000e-16 97.1
33 TraesCS3D01G286200 chr5D 96.000 50 2 0 4887 4936 368333263 368333312 1.460000e-11 82.4
34 TraesCS3D01G286200 chr7D 83.205 780 91 15 5483 6246 3599808 3599053 0.000000e+00 678.0
35 TraesCS3D01G286200 chr7D 81.618 816 130 18 5486 6288 428039581 428040389 0.000000e+00 658.0
36 TraesCS3D01G286200 chr7D 87.037 162 16 4 1 157 31577296 31577457 1.810000e-40 178.0
37 TraesCS3D01G286200 chr7D 86.667 165 13 6 1 156 119058755 119058591 2.340000e-39 174.0
38 TraesCS3D01G286200 chr7D 90.278 72 2 4 3129 3195 119165940 119166011 8.710000e-14 89.8
39 TraesCS3D01G286200 chr5B 86.726 565 63 3 5741 6293 525593440 525592876 8.990000e-173 617.0
40 TraesCS3D01G286200 chr5B 96.000 50 2 0 4887 4936 436259153 436259202 1.460000e-11 82.4
41 TraesCS3D01G286200 chr7A 88.934 497 53 2 5482 5977 655043329 655043824 4.180000e-171 612.0
42 TraesCS3D01G286200 chr7A 79.474 799 146 12 5509 6293 76368162 76367368 9.250000e-153 551.0
43 TraesCS3D01G286200 chr7A 84.946 465 55 9 3564 4025 238588766 238589218 2.070000e-124 457.0
44 TraesCS3D01G286200 chr7A 90.000 140 13 1 4157 4295 238589298 238589437 5.030000e-41 180.0
45 TraesCS3D01G286200 chr7A 91.111 90 4 3 2539 2625 731264649 731264737 1.110000e-22 119.0
46 TraesCS3D01G286200 chr7A 86.154 65 8 1 4891 4954 712180984 712181048 1.140000e-07 69.4
47 TraesCS3D01G286200 chr7B 92.308 403 26 5 5482 5881 594061951 594061551 9.180000e-158 568.0
48 TraesCS3D01G286200 chr5A 85.161 465 54 9 3564 4025 567942208 567941756 4.460000e-126 462.0
49 TraesCS3D01G286200 chr5A 85.161 465 54 9 3564 4025 708311795 708312247 4.460000e-126 462.0
50 TraesCS3D01G286200 chr5A 90.000 140 13 1 4157 4295 567941676 567941537 5.030000e-41 180.0
51 TraesCS3D01G286200 chr5A 90.000 140 13 1 4157 4295 708312327 708312466 5.030000e-41 180.0
52 TraesCS3D01G286200 chr5A 96.000 50 2 0 4887 4936 470196289 470196338 1.460000e-11 82.4
53 TraesCS3D01G286200 chr1B 80.742 566 92 10 5741 6291 397829160 397828597 5.850000e-115 425.0
54 TraesCS3D01G286200 chr1B 88.217 314 36 1 5487 5799 6540916 6541229 2.150000e-99 374.0
55 TraesCS3D01G286200 chr1B 83.553 152 19 5 7 154 360372407 360372556 3.070000e-28 137.0
56 TraesCS3D01G286200 chr1B 90.323 93 5 2 2542 2631 129095888 129095797 1.110000e-22 119.0
57 TraesCS3D01G286200 chr1B 75.568 176 37 1 1362 1537 588321780 588321611 1.460000e-11 82.4
58 TraesCS3D01G286200 chr1B 80.000 90 10 7 4223 4308 622935334 622935249 6.830000e-05 60.2
59 TraesCS3D01G286200 chr6D 86.503 163 15 5 1 157 357784931 357785092 8.410000e-39 172.0
60 TraesCS3D01G286200 chr6D 93.443 61 3 1 3132 3191 26738821 26738761 8.710000e-14 89.8
61 TraesCS3D01G286200 chr6D 90.141 71 1 4 3131 3195 24554522 24554592 3.130000e-13 87.9
62 TraesCS3D01G286200 chr1D 74.664 446 85 20 1359 1796 435145117 435145542 8.410000e-39 172.0
63 TraesCS3D01G286200 chr1D 91.304 69 0 2 3133 3195 311688920 311688852 8.710000e-14 89.8
64 TraesCS3D01G286200 chr2B 86.928 153 14 3 1 148 137262383 137262232 3.910000e-37 167.0
65 TraesCS3D01G286200 chr2B 88.776 98 7 2 2540 2634 281272330 281272234 4.000000e-22 117.0
66 TraesCS3D01G286200 chr6B 92.045 88 3 2 2540 2624 193639958 193640044 3.090000e-23 121.0
67 TraesCS3D01G286200 chr4A 89.691 97 5 3 2535 2627 614251422 614251517 1.110000e-22 119.0
68 TraesCS3D01G286200 chr4A 91.549 71 0 2 3130 3194 626981490 626981560 6.740000e-15 93.5
69 TraesCS3D01G286200 chr4A 88.732 71 3 3 3126 3191 574392722 574392792 1.460000e-11 82.4
70 TraesCS3D01G286200 chr4D 77.778 108 21 2 4609 4716 475176591 475176487 5.280000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G286200 chr3D 395054912 395061222 6310 False 11655.0 11655 100.0000 1 6311 1 chr3D.!!$F1 6310
1 TraesCS3D01G286200 chr3A 514555492 514563041 7549 False 1476.8 3583 89.4974 157 6311 5 chr3A.!!$F4 6154
2 TraesCS3D01G286200 chr3A 18852744 18853415 671 False 310.0 440 87.1505 3564 4295 2 chr3A.!!$F2 731
3 TraesCS3D01G286200 chr3A 18871123 18871794 671 False 310.0 440 87.1505 3564 4295 2 chr3A.!!$F3 731
4 TraesCS3D01G286200 chr3B 519765272 519770040 4768 False 1308.8 2436 91.9702 492 5451 5 chr3B.!!$F3 4959
5 TraesCS3D01G286200 chr2D 14520102 14520918 816 True 870.0 870 86.1140 5483 6291 1 chr2D.!!$R1 808
6 TraesCS3D01G286200 chr2D 536988616 536989342 726 False 484.0 484 79.1270 5486 6201 1 chr2D.!!$F2 715
7 TraesCS3D01G286200 chr5D 354720614 354721432 818 False 815.0 815 84.8780 5487 6293 1 chr5D.!!$F1 806
8 TraesCS3D01G286200 chr7D 3599053 3599808 755 True 678.0 678 83.2050 5483 6246 1 chr7D.!!$R1 763
9 TraesCS3D01G286200 chr7D 428039581 428040389 808 False 658.0 658 81.6180 5486 6288 1 chr7D.!!$F3 802
10 TraesCS3D01G286200 chr5B 525592876 525593440 564 True 617.0 617 86.7260 5741 6293 1 chr5B.!!$R1 552
11 TraesCS3D01G286200 chr7A 76367368 76368162 794 True 551.0 551 79.4740 5509 6293 1 chr7A.!!$R1 784
12 TraesCS3D01G286200 chr7A 238588766 238589437 671 False 318.5 457 87.4730 3564 4295 2 chr7A.!!$F4 731
13 TraesCS3D01G286200 chr5A 567941537 567942208 671 True 321.0 462 87.5805 3564 4295 2 chr5A.!!$R1 731
14 TraesCS3D01G286200 chr5A 708311795 708312466 671 False 321.0 462 87.5805 3564 4295 2 chr5A.!!$F2 731
15 TraesCS3D01G286200 chr1B 397828597 397829160 563 True 425.0 425 80.7420 5741 6291 1 chr1B.!!$R2 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.029300 CTTGCTGGTCGTGTGTTTGG 59.971 55.0 0.00 0.00 0.00 3.28 F
112 113 0.179119 GTGTTCGCTACCTGCCGTAT 60.179 55.0 0.00 0.00 38.78 3.06 F
1126 2532 0.038021 TAAGCTGCCTGCAATCCACA 59.962 50.0 0.00 0.00 45.94 4.17 F
1968 3400 0.241481 ACGAGTCGAACAAGGAGCTC 59.759 55.0 21.50 4.71 0.00 4.09 F
2629 4207 0.107459 GGACGGAGGGAGTACGTACT 60.107 60.0 27.71 27.71 41.40 2.73 F
3136 4736 0.320421 TGTGCGCTGAAAGGTACTCC 60.320 55.0 9.73 0.00 38.49 3.85 F
4006 5615 0.328258 TTGGCAGAGGTTAGGCTTCC 59.672 55.0 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1045 2451 0.319383 GCGACGCAGATGGAGATGAT 60.319 55.000 16.42 0.00 0.00 2.45 R
2058 3490 0.326264 AGAAGGGCTTGCTGTACCAG 59.674 55.000 0.00 0.00 34.12 4.00 R
2603 4157 0.033796 ACTCCCTCCGTCCGATGTAA 60.034 55.000 0.00 0.00 0.00 2.41 R
3117 4717 0.320421 GGAGTACCTTTCAGCGCACA 60.320 55.000 11.47 0.00 0.00 4.57 R
4593 6226 0.412244 AGGTACTCCAGGCCTGTACA 59.588 55.000 30.63 13.55 38.50 2.90 R
4604 6240 1.741770 CGCCTTGTGCAGGTACTCC 60.742 63.158 0.00 0.00 46.07 3.85 R
5472 7134 0.103390 TTTCGAGGAAGCGACACACA 59.897 50.000 0.00 0.00 40.42 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.349682 CCGTGTACTGGCTAGGGA 57.650 61.111 0.85 0.00 0.00 4.20
19 20 2.116383 CCGTGTACTGGCTAGGGAG 58.884 63.158 0.85 0.00 0.00 4.30
28 29 2.813200 GCTAGGGAGCCGTGTACC 59.187 66.667 0.00 0.00 43.49 3.34
29 30 2.794028 GCTAGGGAGCCGTGTACCC 61.794 68.421 0.00 0.00 43.49 3.69
30 31 2.042639 TAGGGAGCCGTGTACCCC 60.043 66.667 0.00 0.00 44.21 4.95
31 32 4.007323 AGGGAGCCGTGTACCCCT 62.007 66.667 0.00 0.00 44.21 4.79
32 33 2.172229 TAGGGAGCCGTGTACCCCTT 62.172 60.000 10.04 0.00 46.57 3.95
33 34 2.599757 GGGAGCCGTGTACCCCTTT 61.600 63.158 0.00 0.00 37.85 3.11
34 35 1.266867 GGGAGCCGTGTACCCCTTTA 61.267 60.000 0.00 0.00 37.85 1.85
35 36 0.614812 GGAGCCGTGTACCCCTTTAA 59.385 55.000 0.00 0.00 0.00 1.52
36 37 1.676916 GGAGCCGTGTACCCCTTTAAC 60.677 57.143 0.00 0.00 0.00 2.01
37 38 1.277273 GAGCCGTGTACCCCTTTAACT 59.723 52.381 0.00 0.00 0.00 2.24
38 39 1.701292 AGCCGTGTACCCCTTTAACTT 59.299 47.619 0.00 0.00 0.00 2.66
39 40 2.107031 AGCCGTGTACCCCTTTAACTTT 59.893 45.455 0.00 0.00 0.00 2.66
40 41 2.485426 GCCGTGTACCCCTTTAACTTTC 59.515 50.000 0.00 0.00 0.00 2.62
41 42 3.076621 CCGTGTACCCCTTTAACTTTCC 58.923 50.000 0.00 0.00 0.00 3.13
42 43 3.244665 CCGTGTACCCCTTTAACTTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
43 44 4.392047 CGTGTACCCCTTTAACTTTCCTT 58.608 43.478 0.00 0.00 0.00 3.36
44 45 4.453478 CGTGTACCCCTTTAACTTTCCTTC 59.547 45.833 0.00 0.00 0.00 3.46
45 46 5.379187 GTGTACCCCTTTAACTTTCCTTCA 58.621 41.667 0.00 0.00 0.00 3.02
46 47 5.829391 GTGTACCCCTTTAACTTTCCTTCAA 59.171 40.000 0.00 0.00 0.00 2.69
47 48 5.829391 TGTACCCCTTTAACTTTCCTTCAAC 59.171 40.000 0.00 0.00 0.00 3.18
48 49 5.138758 ACCCCTTTAACTTTCCTTCAACT 57.861 39.130 0.00 0.00 0.00 3.16
49 50 4.893524 ACCCCTTTAACTTTCCTTCAACTG 59.106 41.667 0.00 0.00 0.00 3.16
50 51 4.262036 CCCCTTTAACTTTCCTTCAACTGC 60.262 45.833 0.00 0.00 0.00 4.40
51 52 4.262036 CCCTTTAACTTTCCTTCAACTGCC 60.262 45.833 0.00 0.00 0.00 4.85
52 53 4.262036 CCTTTAACTTTCCTTCAACTGCCC 60.262 45.833 0.00 0.00 0.00 5.36
53 54 1.704641 AACTTTCCTTCAACTGCCCC 58.295 50.000 0.00 0.00 0.00 5.80
54 55 0.555769 ACTTTCCTTCAACTGCCCCA 59.444 50.000 0.00 0.00 0.00 4.96
55 56 1.147817 ACTTTCCTTCAACTGCCCCAT 59.852 47.619 0.00 0.00 0.00 4.00
56 57 1.547372 CTTTCCTTCAACTGCCCCATG 59.453 52.381 0.00 0.00 0.00 3.66
57 58 0.251742 TTCCTTCAACTGCCCCATGG 60.252 55.000 4.14 4.14 0.00 3.66
58 59 1.077265 CCTTCAACTGCCCCATGGT 59.923 57.895 11.73 0.00 0.00 3.55
59 60 0.542702 CCTTCAACTGCCCCATGGTT 60.543 55.000 11.73 0.00 0.00 3.67
60 61 0.604578 CTTCAACTGCCCCATGGTTG 59.395 55.000 11.73 8.33 40.87 3.77
61 62 0.831288 TTCAACTGCCCCATGGTTGG 60.831 55.000 11.73 6.85 43.23 3.77
69 70 3.698765 CCATGGTTGGGGTCTTGC 58.301 61.111 2.57 0.00 39.56 4.01
70 71 1.077265 CCATGGTTGGGGTCTTGCT 59.923 57.895 2.57 0.00 39.56 3.91
71 72 1.252904 CCATGGTTGGGGTCTTGCTG 61.253 60.000 2.57 0.00 39.56 4.41
72 73 1.077265 ATGGTTGGGGTCTTGCTGG 59.923 57.895 0.00 0.00 0.00 4.85
73 74 1.729267 ATGGTTGGGGTCTTGCTGGT 61.729 55.000 0.00 0.00 0.00 4.00
74 75 1.603739 GGTTGGGGTCTTGCTGGTC 60.604 63.158 0.00 0.00 0.00 4.02
75 76 1.966451 GTTGGGGTCTTGCTGGTCG 60.966 63.158 0.00 0.00 0.00 4.79
76 77 2.448582 TTGGGGTCTTGCTGGTCGT 61.449 57.895 0.00 0.00 0.00 4.34
77 78 2.358737 GGGGTCTTGCTGGTCGTG 60.359 66.667 0.00 0.00 0.00 4.35
78 79 2.426023 GGGTCTTGCTGGTCGTGT 59.574 61.111 0.00 0.00 0.00 4.49
79 80 1.961277 GGGTCTTGCTGGTCGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
80 81 1.227556 GGTCTTGCTGGTCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
81 82 0.814010 GGTCTTGCTGGTCGTGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
82 83 1.014352 GTCTTGCTGGTCGTGTGTTT 58.986 50.000 0.00 0.00 0.00 2.83
83 84 1.013596 TCTTGCTGGTCGTGTGTTTG 58.986 50.000 0.00 0.00 0.00 2.93
84 85 0.029300 CTTGCTGGTCGTGTGTTTGG 59.971 55.000 0.00 0.00 0.00 3.28
85 86 0.393132 TTGCTGGTCGTGTGTTTGGA 60.393 50.000 0.00 0.00 0.00 3.53
86 87 1.092921 TGCTGGTCGTGTGTTTGGAC 61.093 55.000 0.00 0.00 0.00 4.02
87 88 1.092921 GCTGGTCGTGTGTTTGGACA 61.093 55.000 0.00 0.00 32.39 4.02
88 89 1.593196 CTGGTCGTGTGTTTGGACAT 58.407 50.000 0.00 0.00 38.23 3.06
89 90 1.531149 CTGGTCGTGTGTTTGGACATC 59.469 52.381 0.00 0.00 38.23 3.06
90 91 1.140052 TGGTCGTGTGTTTGGACATCT 59.860 47.619 0.00 0.00 38.23 2.90
91 92 1.798813 GGTCGTGTGTTTGGACATCTC 59.201 52.381 0.00 0.00 38.23 2.75
92 93 2.548067 GGTCGTGTGTTTGGACATCTCT 60.548 50.000 0.00 0.00 38.23 3.10
93 94 2.476619 GTCGTGTGTTTGGACATCTCTG 59.523 50.000 0.00 0.00 38.23 3.35
94 95 2.102420 TCGTGTGTTTGGACATCTCTGT 59.898 45.455 0.00 0.00 38.23 3.41
95 96 2.221749 CGTGTGTTTGGACATCTCTGTG 59.778 50.000 0.00 0.00 38.23 3.66
96 97 3.206150 GTGTGTTTGGACATCTCTGTGT 58.794 45.455 0.00 0.00 38.23 3.72
97 98 3.627577 GTGTGTTTGGACATCTCTGTGTT 59.372 43.478 0.00 0.00 38.23 3.32
98 99 3.876914 TGTGTTTGGACATCTCTGTGTTC 59.123 43.478 0.00 0.00 38.23 3.18
99 100 3.059597 GTGTTTGGACATCTCTGTGTTCG 60.060 47.826 0.00 0.00 38.23 3.95
100 101 1.795768 TTGGACATCTCTGTGTTCGC 58.204 50.000 0.00 0.00 35.14 4.70
101 102 0.969149 TGGACATCTCTGTGTTCGCT 59.031 50.000 0.00 0.00 35.14 4.93
102 103 2.167662 TGGACATCTCTGTGTTCGCTA 58.832 47.619 0.00 0.00 35.14 4.26
103 104 2.094700 TGGACATCTCTGTGTTCGCTAC 60.095 50.000 0.00 0.00 35.14 3.58
104 105 2.531206 GACATCTCTGTGTTCGCTACC 58.469 52.381 0.00 0.00 35.14 3.18
105 106 2.164624 GACATCTCTGTGTTCGCTACCT 59.835 50.000 0.00 0.00 35.14 3.08
106 107 2.094494 ACATCTCTGTGTTCGCTACCTG 60.094 50.000 0.00 0.00 33.22 4.00
107 108 0.243907 TCTCTGTGTTCGCTACCTGC 59.756 55.000 0.00 0.00 38.57 4.85
108 109 0.737715 CTCTGTGTTCGCTACCTGCC 60.738 60.000 0.00 0.00 38.78 4.85
109 110 2.048597 TGTGTTCGCTACCTGCCG 60.049 61.111 0.00 0.00 38.78 5.69
110 111 2.048503 GTGTTCGCTACCTGCCGT 60.049 61.111 0.00 0.00 38.78 5.68
111 112 1.213537 GTGTTCGCTACCTGCCGTA 59.786 57.895 0.00 0.00 38.78 4.02
112 113 0.179119 GTGTTCGCTACCTGCCGTAT 60.179 55.000 0.00 0.00 38.78 3.06
113 114 0.179121 TGTTCGCTACCTGCCGTATG 60.179 55.000 0.00 0.00 38.78 2.39
114 115 0.874607 GTTCGCTACCTGCCGTATGG 60.875 60.000 0.00 0.00 38.78 2.74
135 136 4.779987 GGCTTTATTTATAAAGTCGGGCG 58.220 43.478 18.51 0.00 46.78 6.13
136 137 4.216731 GCTTTATTTATAAAGTCGGGCGC 58.783 43.478 18.51 0.00 46.78 6.53
137 138 4.260866 GCTTTATTTATAAAGTCGGGCGCA 60.261 41.667 10.83 0.00 46.78 6.09
138 139 5.562113 GCTTTATTTATAAAGTCGGGCGCAT 60.562 40.000 10.83 0.00 46.78 4.73
139 140 3.896648 ATTTATAAAGTCGGGCGCATG 57.103 42.857 10.83 0.00 0.00 4.06
140 141 0.941542 TTATAAAGTCGGGCGCATGC 59.058 50.000 10.83 7.91 41.71 4.06
192 193 2.582498 CGCGACGGGAGGATTCAC 60.582 66.667 0.00 0.00 0.00 3.18
202 203 2.434185 GGATTCACGACTGCGGCA 60.434 61.111 1.29 1.29 43.17 5.69
205 206 3.596066 ATTCACGACTGCGGCAGCT 62.596 57.895 28.80 16.31 45.42 4.24
209 210 2.432456 CGACTGCGGCAGCTACAA 60.432 61.111 28.80 0.00 45.42 2.41
242 243 3.376918 GGTTGCCCTGCTGCTTCC 61.377 66.667 0.00 0.00 0.00 3.46
253 254 3.020026 CTGCTTCCGCTTCACGCTG 62.020 63.158 0.00 0.00 41.76 5.18
305 306 4.337060 CGGCCGTGTGAGTGACGA 62.337 66.667 19.50 0.00 39.21 4.20
314 315 3.450115 GAGTGACGACGGGAGGGG 61.450 72.222 0.00 0.00 0.00 4.79
364 365 2.950673 GCATGGAAACGCCGTTCA 59.049 55.556 1.60 0.00 40.66 3.18
394 395 2.828549 GCCCCATCACGGCGATTT 60.829 61.111 16.62 0.00 36.47 2.17
444 445 0.870307 CGGAGGGATTTACGACAGCG 60.870 60.000 0.00 0.00 44.79 5.18
456 457 4.377708 ACAGCGGCGATGCAGACA 62.378 61.111 26.50 0.00 37.31 3.41
477 478 4.256180 GGCGCGGAATGGGAGGAT 62.256 66.667 8.83 0.00 0.00 3.24
478 479 2.203209 GCGCGGAATGGGAGGATT 60.203 61.111 8.83 0.00 0.00 3.01
479 480 1.070786 GCGCGGAATGGGAGGATTA 59.929 57.895 8.83 0.00 0.00 1.75
480 481 0.951040 GCGCGGAATGGGAGGATTAG 60.951 60.000 8.83 0.00 0.00 1.73
481 482 0.320771 CGCGGAATGGGAGGATTAGG 60.321 60.000 0.00 0.00 0.00 2.69
493 556 3.071167 GGAGGATTAGGTTTGACGGCTAT 59.929 47.826 0.00 0.00 0.00 2.97
523 586 5.659440 AATATGAAGGTGTCCGCAAAAAT 57.341 34.783 0.00 0.00 0.00 1.82
528 591 6.576662 TGAAGGTGTCCGCAAAAATATTTA 57.423 33.333 0.01 0.00 0.00 1.40
529 592 6.383415 TGAAGGTGTCCGCAAAAATATTTAC 58.617 36.000 0.01 0.00 0.00 2.01
530 593 4.976987 AGGTGTCCGCAAAAATATTTACG 58.023 39.130 0.01 6.21 35.53 3.18
534 597 2.113289 CCGCAAAAATATTTACGGCCG 58.887 47.619 26.86 26.86 45.59 6.13
538 603 4.417506 GCAAAAATATTTACGGCCGAACT 58.582 39.130 35.90 17.53 0.00 3.01
550 615 1.140407 GCCGAACTTGATCGAGACGG 61.140 60.000 30.09 30.09 45.48 4.79
585 652 5.622007 CGGTCCTGTGTAGACGGTTATTTTA 60.622 44.000 0.00 0.00 34.97 1.52
591 658 4.028187 GTGTAGACGGTTATTTTACGCGAG 60.028 45.833 15.93 0.00 0.00 5.03
595 662 1.740043 CGGTTATTTTACGCGAGGGGT 60.740 52.381 15.93 0.00 0.00 4.95
602 669 1.444836 TTACGCGAGGGGTTGATTTG 58.555 50.000 15.93 0.00 0.00 2.32
605 672 2.038269 GCGAGGGGTTGATTTGCGA 61.038 57.895 0.00 0.00 0.00 5.10
606 673 1.982073 GCGAGGGGTTGATTTGCGAG 61.982 60.000 0.00 0.00 0.00 5.03
610 677 1.561542 AGGGGTTGATTTGCGAGATCT 59.438 47.619 0.00 0.00 0.00 2.75
620 687 2.859526 TGCGAGATCTGCTAGAGTTG 57.140 50.000 0.00 0.00 0.00 3.16
621 688 1.202348 TGCGAGATCTGCTAGAGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
623 690 2.481104 GCGAGATCTGCTAGAGTTGCTT 60.481 50.000 0.00 0.00 0.00 3.91
630 780 3.448660 TCTGCTAGAGTTGCTTAGATGCA 59.551 43.478 0.00 0.00 41.65 3.96
642 792 3.637432 CTTAGATGCACTTAGGAGCTCG 58.363 50.000 7.83 0.00 35.34 5.03
668 818 0.445436 GCAGAGTGTTCGGCTGATTG 59.555 55.000 0.00 0.00 40.75 2.67
703 853 2.486636 TTCGGCTCGCTGTGTGGTAG 62.487 60.000 0.00 0.00 0.00 3.18
707 2097 1.666011 CTCGCTGTGTGGTAGTGGT 59.334 57.895 0.00 0.00 0.00 4.16
721 2111 2.725221 AGTGGTAGGGGTAGTAGACG 57.275 55.000 0.00 0.00 0.00 4.18
887 2278 7.847487 TCGAAATACGCCAGAATAAAATACAG 58.153 34.615 0.00 0.00 42.26 2.74
1070 2476 3.945434 CATCTGCGTCGCCCATGC 61.945 66.667 15.88 0.00 37.56 4.06
1123 2529 1.718757 CGGTAAGCTGCCTGCAATCC 61.719 60.000 0.00 0.00 45.94 3.01
1124 2530 0.680921 GGTAAGCTGCCTGCAATCCA 60.681 55.000 0.00 0.00 45.94 3.41
1125 2531 0.453390 GTAAGCTGCCTGCAATCCAC 59.547 55.000 0.00 0.00 45.94 4.02
1126 2532 0.038021 TAAGCTGCCTGCAATCCACA 59.962 50.000 0.00 0.00 45.94 4.17
1127 2533 1.530013 AAGCTGCCTGCAATCCACAC 61.530 55.000 0.00 0.00 45.94 3.82
1128 2534 2.270257 GCTGCCTGCAATCCACACA 61.270 57.895 0.00 0.00 42.31 3.72
1129 2535 1.601419 GCTGCCTGCAATCCACACAT 61.601 55.000 0.00 0.00 42.31 3.21
1144 2550 1.003233 ACACATTTTCTCCCCGGAGTC 59.997 52.381 0.73 0.00 42.49 3.36
1175 2606 2.915659 ACTCGTGGCACCCTCGAA 60.916 61.111 12.86 0.00 46.34 3.71
1181 2612 1.070786 TGGCACCCTCGAACTGTTC 59.929 57.895 10.48 10.48 0.00 3.18
1527 2958 1.569479 GCGTCAACTTCTGGCAGACC 61.569 60.000 18.55 0.33 0.00 3.85
1552 2983 2.750637 TCTCCAGCGTCTCCGACC 60.751 66.667 0.00 0.00 35.63 4.79
1695 3126 2.050168 TACACCGTCGTGGCGAAC 60.050 61.111 0.00 0.00 44.86 3.95
1756 3187 2.202492 CCGACGACGAGAAGCTGG 60.202 66.667 9.28 0.00 42.66 4.85
1776 3207 1.024579 TCGTAAGGTACCCGTCGGAC 61.025 60.000 14.39 3.34 38.47 4.79
1968 3400 0.241481 ACGAGTCGAACAAGGAGCTC 59.759 55.000 21.50 4.71 0.00 4.09
2058 3490 0.606604 TCTACCTCAACAACGGCCTC 59.393 55.000 0.00 0.00 0.00 4.70
2166 3598 2.741211 GAACCGACCGCCAACTCC 60.741 66.667 0.00 0.00 0.00 3.85
2293 3767 4.511826 GGTGTCTCTGAACTGAATTTCGTT 59.488 41.667 6.40 6.40 0.00 3.85
2306 3780 6.072508 ACTGAATTTCGTTATGCACAGTGATT 60.073 34.615 4.15 0.00 36.29 2.57
2307 3781 6.676950 TGAATTTCGTTATGCACAGTGATTT 58.323 32.000 4.15 0.00 0.00 2.17
2317 3791 9.410556 GTTATGCACAGTGATTTTTACTGAAAT 57.589 29.630 4.15 5.16 46.52 2.17
2339 3840 7.614124 AATGAAGCTGACATTTTGTTGTTTT 57.386 28.000 11.89 0.00 34.86 2.43
2439 3940 3.995506 GATCCGTGTGGCCCCAAGG 62.996 68.421 13.93 13.93 35.57 3.61
2550 4104 6.593759 TCAGTCCTAAATACTACTCCCTCT 57.406 41.667 0.00 0.00 0.00 3.69
2553 4107 6.263617 CAGTCCTAAATACTACTCCCTCTGTC 59.736 46.154 0.00 0.00 0.00 3.51
2557 4111 4.561254 AATACTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
2559 4113 5.681494 ATACTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
2561 4115 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
2563 4117 1.770658 CTCCCTCTGTCCCATAATGCA 59.229 52.381 0.00 0.00 0.00 3.96
2564 4118 2.173356 CTCCCTCTGTCCCATAATGCAA 59.827 50.000 0.00 0.00 0.00 4.08
2566 4120 2.173356 CCCTCTGTCCCATAATGCAAGA 59.827 50.000 0.00 0.00 0.00 3.02
2568 4122 3.370846 CCTCTGTCCCATAATGCAAGACA 60.371 47.826 0.00 0.00 36.16 3.41
2569 4123 4.458397 CTCTGTCCCATAATGCAAGACAT 58.542 43.478 0.00 0.00 42.30 3.06
2624 4202 0.750911 ACATCGGACGGAGGGAGTAC 60.751 60.000 0.00 0.00 0.00 2.73
2625 4203 1.525535 ATCGGACGGAGGGAGTACG 60.526 63.158 0.00 0.00 46.50 3.67
2626 4204 2.262774 ATCGGACGGAGGGAGTACGT 62.263 60.000 0.00 0.00 45.42 3.57
2627 4205 1.153369 CGGACGGAGGGAGTACGTA 60.153 63.158 0.00 0.00 40.75 3.57
2628 4206 1.432270 CGGACGGAGGGAGTACGTAC 61.432 65.000 18.10 18.10 40.75 3.67
2629 4207 0.107459 GGACGGAGGGAGTACGTACT 60.107 60.000 27.71 27.71 41.40 2.73
2630 4208 1.139058 GGACGGAGGGAGTACGTACTA 59.861 57.143 27.44 0.00 41.40 1.82
2634 4212 3.209410 CGGAGGGAGTACGTACTATGTT 58.791 50.000 27.44 13.65 36.50 2.71
2642 4220 8.651389 AGGGAGTACGTACTATGTTACATAGTA 58.349 37.037 30.30 30.30 36.50 1.82
2671 4249 5.690865 ACTGAGAAACATGTAACCTTTGGA 58.309 37.500 0.00 0.00 0.00 3.53
2672 4250 6.126409 ACTGAGAAACATGTAACCTTTGGAA 58.874 36.000 0.00 0.00 0.00 3.53
2922 4522 1.073216 CGTCGCTTGCTGTCCTGTAG 61.073 60.000 0.00 0.00 0.00 2.74
3044 4644 2.489329 CGGCAACAAGTTCAATGGATCT 59.511 45.455 0.00 0.00 0.00 2.75
3089 4689 0.947244 CGCAAGAAGGTGCACTTTCT 59.053 50.000 31.93 31.93 45.19 2.52
3102 4702 8.142485 AGGTGCACTTTCTTTAAGGTAGTATA 57.858 34.615 17.98 0.00 38.23 1.47
3103 4703 8.769359 AGGTGCACTTTCTTTAAGGTAGTATAT 58.231 33.333 17.98 0.00 38.23 0.86
3104 4704 9.392259 GGTGCACTTTCTTTAAGGTAGTATATT 57.608 33.333 17.98 0.00 38.23 1.28
3133 4733 2.766970 TTTTGTGCGCTGAAAGGTAC 57.233 45.000 9.73 0.00 0.00 3.34
3135 4735 1.508632 TTGTGCGCTGAAAGGTACTC 58.491 50.000 9.73 0.00 38.49 2.59
3136 4736 0.320421 TGTGCGCTGAAAGGTACTCC 60.320 55.000 9.73 0.00 38.49 3.85
3137 4737 1.019805 GTGCGCTGAAAGGTACTCCC 61.020 60.000 9.73 0.00 38.49 4.30
3139 4739 0.460459 GCGCTGAAAGGTACTCCCTC 60.460 60.000 0.00 0.00 45.47 4.30
3140 4740 1.187087 CGCTGAAAGGTACTCCCTCT 58.813 55.000 0.00 0.00 45.47 3.69
3141 4741 1.134965 CGCTGAAAGGTACTCCCTCTG 60.135 57.143 0.00 0.00 45.47 3.35
3142 4742 1.903183 GCTGAAAGGTACTCCCTCTGT 59.097 52.381 0.00 0.00 45.47 3.41
3143 4743 3.097614 GCTGAAAGGTACTCCCTCTGTA 58.902 50.000 0.00 0.00 45.47 2.74
3144 4744 3.514309 GCTGAAAGGTACTCCCTCTGTAA 59.486 47.826 0.00 0.00 45.47 2.41
3145 4745 4.020485 GCTGAAAGGTACTCCCTCTGTAAA 60.020 45.833 0.00 0.00 45.47 2.01
3146 4746 5.479124 TGAAAGGTACTCCCTCTGTAAAC 57.521 43.478 0.00 0.00 45.47 2.01
3147 4747 5.152934 TGAAAGGTACTCCCTCTGTAAACT 58.847 41.667 0.00 0.00 45.47 2.66
3148 4748 6.317312 TGAAAGGTACTCCCTCTGTAAACTA 58.683 40.000 0.00 0.00 45.47 2.24
3149 4749 6.783977 TGAAAGGTACTCCCTCTGTAAACTAA 59.216 38.462 0.00 0.00 45.47 2.24
3150 4750 7.456902 TGAAAGGTACTCCCTCTGTAAACTAAT 59.543 37.037 0.00 0.00 45.47 1.73
3151 4751 8.906238 AAAGGTACTCCCTCTGTAAACTAATA 57.094 34.615 0.00 0.00 45.47 0.98
3152 4752 9.503369 AAAGGTACTCCCTCTGTAAACTAATAT 57.497 33.333 0.00 0.00 45.47 1.28
3216 4816 9.629878 TTTAGAGAAGGAGTAGTATACAGAAGG 57.370 37.037 5.50 0.00 46.26 3.46
3217 4817 7.454553 AGAGAAGGAGTAGTATACAGAAGGA 57.545 40.000 5.50 0.00 46.26 3.36
3218 4818 7.514721 AGAGAAGGAGTAGTATACAGAAGGAG 58.485 42.308 5.50 0.00 46.26 3.69
3219 4819 7.128263 AGAGAAGGAGTAGTATACAGAAGGAGT 59.872 40.741 5.50 0.00 46.26 3.85
3220 4820 8.334522 AGAAGGAGTAGTATACAGAAGGAGTA 57.665 38.462 5.50 0.00 46.26 2.59
3221 4821 8.434392 AGAAGGAGTAGTATACAGAAGGAGTAG 58.566 40.741 5.50 0.00 46.26 2.57
3222 4822 7.695074 AGGAGTAGTATACAGAAGGAGTAGT 57.305 40.000 5.50 0.00 46.26 2.73
3223 4823 8.795899 AGGAGTAGTATACAGAAGGAGTAGTA 57.204 38.462 5.50 0.00 46.26 1.82
3224 4824 9.396351 AGGAGTAGTATACAGAAGGAGTAGTAT 57.604 37.037 5.50 0.00 46.26 2.12
3299 4901 1.202639 ACGAACCTGCTCATTGTCACA 60.203 47.619 0.00 0.00 0.00 3.58
3301 4903 2.349817 CGAACCTGCTCATTGTCACAAC 60.350 50.000 0.00 0.00 0.00 3.32
3554 5160 3.876300 CAGGAGCACTGCCGTAAC 58.124 61.111 0.00 0.00 40.97 2.50
3612 5218 3.062042 GGTTGTGGTGGTAACTCTTACG 58.938 50.000 0.00 0.00 37.00 3.18
3797 5406 6.691508 AGGTAAATCAAAAGAAGACAATGGC 58.308 36.000 0.00 0.00 0.00 4.40
3854 5463 7.224753 CAGTTCAGTTACAAAGAGCTAAAGACA 59.775 37.037 0.00 0.00 0.00 3.41
4006 5615 0.328258 TTGGCAGAGGTTAGGCTTCC 59.672 55.000 0.00 0.00 0.00 3.46
4035 5649 7.989741 CAGCTCTTTTCCTCTCATTCCTAATTA 59.010 37.037 0.00 0.00 0.00 1.40
4037 5651 7.227711 GCTCTTTTCCTCTCATTCCTAATTACC 59.772 40.741 0.00 0.00 0.00 2.85
4071 5687 5.697473 TTTTTCTTCCATCGTGTGCATAA 57.303 34.783 0.00 0.00 0.00 1.90
4133 5749 5.200368 AGAATTTGTCAGTTTCGCCAAAT 57.800 34.783 0.00 0.00 38.72 2.32
4143 5759 5.007626 TCAGTTTCGCCAAATCATATACTGC 59.992 40.000 0.00 0.00 32.63 4.40
4338 5961 3.444388 AGAGAAGCTAAGAGGTACCAACG 59.556 47.826 15.94 0.00 0.00 4.10
4344 5967 2.833631 AAGAGGTACCAACGGACAAG 57.166 50.000 15.94 0.00 0.00 3.16
4345 5968 1.713297 AGAGGTACCAACGGACAAGT 58.287 50.000 15.94 0.00 0.00 3.16
4347 5970 2.824341 AGAGGTACCAACGGACAAGTAG 59.176 50.000 15.94 0.00 0.00 2.57
4349 5972 3.758554 GAGGTACCAACGGACAAGTAGTA 59.241 47.826 15.94 0.00 0.00 1.82
4350 5973 3.760684 AGGTACCAACGGACAAGTAGTAG 59.239 47.826 15.94 0.00 0.00 2.57
4352 5975 1.068055 ACCAACGGACAAGTAGTAGCG 60.068 52.381 0.00 0.00 0.00 4.26
4353 5976 1.068055 CCAACGGACAAGTAGTAGCGT 60.068 52.381 0.00 0.00 0.00 5.07
4354 5977 2.248487 CAACGGACAAGTAGTAGCGTC 58.752 52.381 0.00 0.00 0.00 5.19
4355 5978 1.818642 ACGGACAAGTAGTAGCGTCT 58.181 50.000 0.00 0.00 0.00 4.18
4356 5979 2.157738 ACGGACAAGTAGTAGCGTCTT 58.842 47.619 0.00 0.00 0.00 3.01
4357 5980 3.338249 ACGGACAAGTAGTAGCGTCTTA 58.662 45.455 0.00 0.00 0.00 2.10
4358 5981 3.126000 ACGGACAAGTAGTAGCGTCTTAC 59.874 47.826 0.00 0.00 0.00 2.34
4359 5982 3.678662 GGACAAGTAGTAGCGTCTTACG 58.321 50.000 0.00 0.00 45.88 3.18
4408 6031 3.246167 ACTCTCACCCCTGAAACTCCTAT 60.246 47.826 0.00 0.00 0.00 2.57
4440 6063 9.739276 ACTTGTATGTATCCTTCAGAAAAATCA 57.261 29.630 0.00 0.00 0.00 2.57
4488 6117 2.099427 ACTAAGGATTTCGCTCGACTCC 59.901 50.000 10.45 10.45 0.00 3.85
4511 6140 4.116238 GCTCAAGGTTTGCTAGCTACTAG 58.884 47.826 17.23 10.78 37.16 2.57
4512 6141 4.688021 CTCAAGGTTTGCTAGCTACTAGG 58.312 47.826 17.23 7.63 34.88 3.02
4513 6142 3.118738 TCAAGGTTTGCTAGCTACTAGGC 60.119 47.826 17.23 0.00 34.88 3.93
4593 6226 7.651808 ACTGAATTTTCATTTTCTGACGATGT 58.348 30.769 0.00 0.00 36.46 3.06
4604 6240 0.246360 TGACGATGTGTACAGGCCTG 59.754 55.000 31.60 31.60 0.00 4.85
4801 6437 2.040544 TCGACCCCGAGTACGTTCC 61.041 63.158 0.00 0.00 40.30 3.62
4804 6440 1.661498 GACCCCGAGTACGTTCCTCC 61.661 65.000 0.00 0.00 37.88 4.30
4821 6457 2.514803 CTCCCCACTAACCAAAACCAG 58.485 52.381 0.00 0.00 0.00 4.00
4851 6508 3.383620 AACTGAAGTGCTCTCTGACAG 57.616 47.619 0.00 0.00 0.00 3.51
4856 6513 3.763671 TGCTCTCTGACAGCACGA 58.236 55.556 3.35 0.00 42.09 4.35
4857 6514 1.583477 TGCTCTCTGACAGCACGAG 59.417 57.895 3.35 4.92 42.09 4.18
5043 6700 2.860293 GTGGACGACAACATGCGG 59.140 61.111 0.00 0.00 0.00 5.69
5203 6860 1.823169 GAGGGTGCACGGTTCCTACA 61.823 60.000 11.45 0.00 0.00 2.74
5283 6940 0.324830 AGAGTGGGAGGGTGCTAGAC 60.325 60.000 0.00 0.00 0.00 2.59
5316 6976 1.957177 CCCGCAGCTAGATAAGTCTGA 59.043 52.381 0.00 0.00 35.87 3.27
5392 7054 6.601613 TCATAACATGTCCCCACAATAAGAAC 59.398 38.462 0.00 0.00 35.64 3.01
5403 7065 5.646360 CCCACAATAAGAACAAACGGTATCT 59.354 40.000 0.00 0.00 0.00 1.98
5415 7077 5.661759 ACAAACGGTATCTATTCCCTCTTCT 59.338 40.000 0.00 0.00 0.00 2.85
5418 7080 4.140994 ACGGTATCTATTCCCTCTTCTCCA 60.141 45.833 0.00 0.00 0.00 3.86
5440 7102 1.283029 TGAGCTCCCCCTTCTTTGATG 59.717 52.381 12.15 0.00 0.00 3.07
5456 7118 0.247736 GATGGTGTGTCGCTTCCTCT 59.752 55.000 0.00 0.00 0.00 3.69
5472 7134 6.038714 CGCTTCCTCTAAATAGGCTTTTGATT 59.961 38.462 0.00 0.00 36.51 2.57
5480 7142 4.685169 ATAGGCTTTTGATTGTGTGTCG 57.315 40.909 0.00 0.00 0.00 4.35
5642 7307 2.656646 CACCTAGTGGCAGTCGCA 59.343 61.111 0.00 0.00 41.24 5.10
5662 7327 1.078759 AAGCGACACTACGATGCTGC 61.079 55.000 0.00 0.00 35.77 5.25
5681 7346 3.343788 GAGCCGACGCACTGTAGCT 62.344 63.158 0.00 0.00 41.61 3.32
5806 7477 1.157585 GCCGGAAAGACCTTCTCAAC 58.842 55.000 5.05 0.00 36.31 3.18
5823 7494 5.657474 TCTCAACCACCATCTTATTACGAC 58.343 41.667 0.00 0.00 0.00 4.34
5838 7509 2.421131 CGACTCGTCCAAAGTGTCG 58.579 57.895 6.46 6.46 44.87 4.35
5896 7567 3.395702 TTGCGGCGGATGGGTAGT 61.396 61.111 9.78 0.00 0.00 2.73
5903 7574 0.608640 GCGGATGGGTAGTCCTATGG 59.391 60.000 0.00 0.00 35.02 2.74
5905 7576 2.326428 CGGATGGGTAGTCCTATGGTT 58.674 52.381 0.00 0.00 35.02 3.67
5982 7653 0.888736 CGTCCACATCACCCTTGCAA 60.889 55.000 0.00 0.00 0.00 4.08
5983 7654 1.327303 GTCCACATCACCCTTGCAAA 58.673 50.000 0.00 0.00 0.00 3.68
6006 7678 6.710597 AAGTACAAGCGAAGAGGATATGTA 57.289 37.500 0.00 0.00 0.00 2.29
6019 7691 2.551721 GGATATGTACCTCCGTCTCCGA 60.552 54.545 0.00 0.00 35.63 4.55
6116 7803 5.822519 AGCTGCCAAACGAATATCTTAATCA 59.177 36.000 0.00 0.00 0.00 2.57
6160 7850 1.136828 TGGAGCTAACCAAGGTGTGT 58.863 50.000 0.00 0.00 35.60 3.72
6161 7851 1.493022 TGGAGCTAACCAAGGTGTGTT 59.507 47.619 0.00 0.00 35.60 3.32
6222 7912 0.898789 ACTCTGTCGTCGGGGTGATT 60.899 55.000 0.00 0.00 31.60 2.57
6240 7930 3.259625 TGATTCTCCATGACACGGTGTTA 59.740 43.478 15.94 12.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.017559 GCTCCCTAGCCAGTACACGG 62.018 65.000 0.00 0.00 43.40 4.94
12 13 2.132352 GGGGTACACGGCTCCCTAG 61.132 68.421 0.00 0.00 40.88 3.02
13 14 2.042639 GGGGTACACGGCTCCCTA 60.043 66.667 0.00 0.00 40.88 3.53
14 15 4.007323 AGGGGTACACGGCTCCCT 62.007 66.667 0.00 0.00 44.43 4.20
15 16 1.266867 TAAAGGGGTACACGGCTCCC 61.267 60.000 0.00 0.00 40.41 4.30
16 17 0.614812 TTAAAGGGGTACACGGCTCC 59.385 55.000 0.00 0.00 0.00 4.70
17 18 1.277273 AGTTAAAGGGGTACACGGCTC 59.723 52.381 0.00 0.00 0.00 4.70
18 19 1.355112 AGTTAAAGGGGTACACGGCT 58.645 50.000 0.00 0.00 0.00 5.52
19 20 2.189594 AAGTTAAAGGGGTACACGGC 57.810 50.000 0.00 0.00 0.00 5.68
20 21 3.076621 GGAAAGTTAAAGGGGTACACGG 58.923 50.000 0.00 0.00 0.00 4.94
21 22 4.011966 AGGAAAGTTAAAGGGGTACACG 57.988 45.455 0.00 0.00 0.00 4.49
22 23 5.379187 TGAAGGAAAGTTAAAGGGGTACAC 58.621 41.667 0.00 0.00 0.00 2.90
23 24 5.649970 TGAAGGAAAGTTAAAGGGGTACA 57.350 39.130 0.00 0.00 0.00 2.90
24 25 6.016527 CAGTTGAAGGAAAGTTAAAGGGGTAC 60.017 42.308 0.00 0.00 0.00 3.34
25 26 6.066032 CAGTTGAAGGAAAGTTAAAGGGGTA 58.934 40.000 0.00 0.00 0.00 3.69
26 27 4.893524 CAGTTGAAGGAAAGTTAAAGGGGT 59.106 41.667 0.00 0.00 0.00 4.95
27 28 4.262036 GCAGTTGAAGGAAAGTTAAAGGGG 60.262 45.833 0.00 0.00 0.00 4.79
28 29 4.262036 GGCAGTTGAAGGAAAGTTAAAGGG 60.262 45.833 0.00 0.00 0.00 3.95
29 30 4.262036 GGGCAGTTGAAGGAAAGTTAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
30 31 4.262036 GGGGCAGTTGAAGGAAAGTTAAAG 60.262 45.833 0.00 0.00 0.00 1.85
31 32 3.639561 GGGGCAGTTGAAGGAAAGTTAAA 59.360 43.478 0.00 0.00 0.00 1.52
32 33 3.227614 GGGGCAGTTGAAGGAAAGTTAA 58.772 45.455 0.00 0.00 0.00 2.01
33 34 2.175931 TGGGGCAGTTGAAGGAAAGTTA 59.824 45.455 0.00 0.00 0.00 2.24
34 35 1.063266 TGGGGCAGTTGAAGGAAAGTT 60.063 47.619 0.00 0.00 0.00 2.66
35 36 0.555769 TGGGGCAGTTGAAGGAAAGT 59.444 50.000 0.00 0.00 0.00 2.66
36 37 1.547372 CATGGGGCAGTTGAAGGAAAG 59.453 52.381 0.00 0.00 0.00 2.62
37 38 1.631405 CATGGGGCAGTTGAAGGAAA 58.369 50.000 0.00 0.00 0.00 3.13
38 39 0.251742 CCATGGGGCAGTTGAAGGAA 60.252 55.000 2.85 0.00 0.00 3.36
39 40 1.383799 CCATGGGGCAGTTGAAGGA 59.616 57.895 2.85 0.00 0.00 3.36
40 41 0.542702 AACCATGGGGCAGTTGAAGG 60.543 55.000 18.09 0.00 37.90 3.46
41 42 0.604578 CAACCATGGGGCAGTTGAAG 59.395 55.000 18.09 0.00 42.76 3.02
42 43 0.831288 CCAACCATGGGGCAGTTGAA 60.831 55.000 18.09 0.00 42.76 2.69
43 44 1.228831 CCAACCATGGGGCAGTTGA 60.229 57.895 18.09 0.00 42.76 3.18
44 45 3.379880 CCAACCATGGGGCAGTTG 58.620 61.111 18.09 10.76 43.51 3.16
53 54 1.252904 CCAGCAAGACCCCAACCATG 61.253 60.000 0.00 0.00 0.00 3.66
54 55 1.077265 CCAGCAAGACCCCAACCAT 59.923 57.895 0.00 0.00 0.00 3.55
55 56 2.351924 GACCAGCAAGACCCCAACCA 62.352 60.000 0.00 0.00 0.00 3.67
56 57 1.603739 GACCAGCAAGACCCCAACC 60.604 63.158 0.00 0.00 0.00 3.77
57 58 1.966451 CGACCAGCAAGACCCCAAC 60.966 63.158 0.00 0.00 0.00 3.77
58 59 2.429930 CGACCAGCAAGACCCCAA 59.570 61.111 0.00 0.00 0.00 4.12
59 60 2.847234 ACGACCAGCAAGACCCCA 60.847 61.111 0.00 0.00 0.00 4.96
60 61 2.358737 CACGACCAGCAAGACCCC 60.359 66.667 0.00 0.00 0.00 4.95
61 62 1.961277 CACACGACCAGCAAGACCC 60.961 63.158 0.00 0.00 0.00 4.46
62 63 0.814010 AACACACGACCAGCAAGACC 60.814 55.000 0.00 0.00 0.00 3.85
63 64 1.014352 AAACACACGACCAGCAAGAC 58.986 50.000 0.00 0.00 0.00 3.01
64 65 1.013596 CAAACACACGACCAGCAAGA 58.986 50.000 0.00 0.00 0.00 3.02
65 66 0.029300 CCAAACACACGACCAGCAAG 59.971 55.000 0.00 0.00 0.00 4.01
66 67 0.393132 TCCAAACACACGACCAGCAA 60.393 50.000 0.00 0.00 0.00 3.91
67 68 1.092921 GTCCAAACACACGACCAGCA 61.093 55.000 0.00 0.00 0.00 4.41
68 69 1.092921 TGTCCAAACACACGACCAGC 61.093 55.000 0.00 0.00 0.00 4.85
69 70 1.531149 GATGTCCAAACACACGACCAG 59.469 52.381 0.00 0.00 38.48 4.00
70 71 1.140052 AGATGTCCAAACACACGACCA 59.860 47.619 0.00 0.00 38.48 4.02
71 72 1.798813 GAGATGTCCAAACACACGACC 59.201 52.381 0.00 0.00 38.48 4.79
72 73 2.476619 CAGAGATGTCCAAACACACGAC 59.523 50.000 0.00 0.00 38.48 4.34
73 74 2.102420 ACAGAGATGTCCAAACACACGA 59.898 45.455 0.00 0.00 38.48 4.35
74 75 2.221749 CACAGAGATGTCCAAACACACG 59.778 50.000 0.00 0.00 38.48 4.49
75 76 3.206150 ACACAGAGATGTCCAAACACAC 58.794 45.455 0.00 0.00 38.48 3.82
76 77 3.558931 ACACAGAGATGTCCAAACACA 57.441 42.857 0.00 0.00 38.48 3.72
77 78 3.059597 CGAACACAGAGATGTCCAAACAC 60.060 47.826 0.00 0.00 38.48 3.32
78 79 3.130633 CGAACACAGAGATGTCCAAACA 58.869 45.455 0.00 0.00 40.38 2.83
79 80 2.096218 GCGAACACAGAGATGTCCAAAC 60.096 50.000 0.00 0.00 30.55 2.93
80 81 2.143122 GCGAACACAGAGATGTCCAAA 58.857 47.619 0.00 0.00 30.55 3.28
81 82 1.344438 AGCGAACACAGAGATGTCCAA 59.656 47.619 0.00 0.00 30.55 3.53
82 83 0.969149 AGCGAACACAGAGATGTCCA 59.031 50.000 0.00 0.00 30.55 4.02
83 84 2.531206 GTAGCGAACACAGAGATGTCC 58.469 52.381 0.00 0.00 30.55 4.02
84 85 2.164624 AGGTAGCGAACACAGAGATGTC 59.835 50.000 0.00 0.00 30.55 3.06
85 86 2.094494 CAGGTAGCGAACACAGAGATGT 60.094 50.000 0.00 0.00 0.00 3.06
86 87 2.534298 CAGGTAGCGAACACAGAGATG 58.466 52.381 0.00 0.00 0.00 2.90
87 88 1.134965 GCAGGTAGCGAACACAGAGAT 60.135 52.381 0.00 0.00 0.00 2.75
88 89 0.243907 GCAGGTAGCGAACACAGAGA 59.756 55.000 0.00 0.00 0.00 3.10
89 90 2.743195 GCAGGTAGCGAACACAGAG 58.257 57.895 0.00 0.00 0.00 3.35
90 91 4.988065 GCAGGTAGCGAACACAGA 57.012 55.556 0.00 0.00 0.00 3.41
116 117 5.753744 CATGCGCCCGACTTTATAAATAAA 58.246 37.500 4.18 0.00 0.00 1.40
117 118 4.319911 GCATGCGCCCGACTTTATAAATAA 60.320 41.667 4.18 0.00 0.00 1.40
118 119 3.187637 GCATGCGCCCGACTTTATAAATA 59.812 43.478 4.18 0.00 0.00 1.40
119 120 2.031157 GCATGCGCCCGACTTTATAAAT 60.031 45.455 4.18 0.00 0.00 1.40
120 121 1.332375 GCATGCGCCCGACTTTATAAA 59.668 47.619 4.18 0.00 0.00 1.40
121 122 0.941542 GCATGCGCCCGACTTTATAA 59.058 50.000 4.18 0.00 0.00 0.98
122 123 2.612200 GCATGCGCCCGACTTTATA 58.388 52.632 4.18 0.00 0.00 0.98
123 124 3.420943 GCATGCGCCCGACTTTAT 58.579 55.556 4.18 0.00 0.00 1.40
177 178 1.226603 GTCGTGAATCCTCCCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
179 180 1.890894 CAGTCGTGAATCCTCCCGT 59.109 57.895 0.00 0.00 0.00 5.28
192 193 2.432456 TTGTAGCTGCCGCAGTCG 60.432 61.111 21.29 0.00 39.10 4.18
196 197 2.047274 GGAGTTGTAGCTGCCGCA 60.047 61.111 2.05 0.00 39.10 5.69
202 203 1.204941 GTCGTCCATGGAGTTGTAGCT 59.795 52.381 16.81 0.00 0.00 3.32
205 206 1.068125 CACGTCGTCCATGGAGTTGTA 60.068 52.381 16.81 0.00 0.00 2.41
209 210 1.469335 AACCACGTCGTCCATGGAGT 61.469 55.000 16.81 6.62 36.94 3.85
253 254 2.202892 CCTACTCCTTTCGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
259 260 2.890961 GCCGCGCCTACTCCTTTC 60.891 66.667 0.00 0.00 0.00 2.62
288 289 4.337060 TCGTCACTCACACGGCCG 62.337 66.667 26.86 26.86 37.85 6.13
294 295 2.265904 CCTCCCGTCGTCACTCACA 61.266 63.158 0.00 0.00 0.00 3.58
338 339 3.430862 TTTCCATGCGCTGACGGC 61.431 61.111 9.73 0.00 40.57 5.68
339 340 2.480555 GTTTCCATGCGCTGACGG 59.519 61.111 9.73 3.58 40.57 4.79
346 347 2.202298 GAACGGCGTTTCCATGCG 60.202 61.111 27.48 0.00 35.51 4.73
347 348 1.154225 CTGAACGGCGTTTCCATGC 60.154 57.895 27.48 13.13 34.01 4.06
358 359 2.983592 GCCACAACCCCTGAACGG 60.984 66.667 0.00 0.00 0.00 4.44
390 391 2.485122 CTCGTTGCGCCCCAAATC 59.515 61.111 4.18 0.00 34.68 2.17
403 404 2.185350 CAAGCCATCTCGCCTCGT 59.815 61.111 0.00 0.00 0.00 4.18
405 406 2.203126 CCCAAGCCATCTCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
427 428 1.152383 GCCGCTGTCGTAAATCCCTC 61.152 60.000 0.00 0.00 0.00 4.30
464 465 3.118038 TCAAACCTAATCCTCCCATTCCG 60.118 47.826 0.00 0.00 0.00 4.30
469 470 1.557832 CCGTCAAACCTAATCCTCCCA 59.442 52.381 0.00 0.00 0.00 4.37
477 478 1.407712 GCCCATAGCCGTCAAACCTAA 60.408 52.381 0.00 0.00 34.35 2.69
478 479 0.179468 GCCCATAGCCGTCAAACCTA 59.821 55.000 0.00 0.00 34.35 3.08
479 480 1.077716 GCCCATAGCCGTCAAACCT 60.078 57.895 0.00 0.00 34.35 3.50
480 481 3.509659 GCCCATAGCCGTCAAACC 58.490 61.111 0.00 0.00 34.35 3.27
493 556 1.283613 ACACCTTCATATTTCGGCCCA 59.716 47.619 0.00 0.00 0.00 5.36
507 570 5.395642 CGTAAATATTTTTGCGGACACCTT 58.604 37.500 5.91 0.00 44.14 3.50
523 586 3.117794 CGATCAAGTTCGGCCGTAAATA 58.882 45.455 27.15 1.01 35.50 1.40
528 591 1.153823 CTCGATCAAGTTCGGCCGT 60.154 57.895 27.15 2.66 39.56 5.68
529 592 1.138883 TCTCGATCAAGTTCGGCCG 59.861 57.895 22.12 22.12 39.56 6.13
530 593 1.140407 CGTCTCGATCAAGTTCGGCC 61.140 60.000 0.00 0.00 39.56 6.13
532 595 0.170561 ACCGTCTCGATCAAGTTCGG 59.829 55.000 14.74 14.74 39.56 4.30
534 597 4.727235 AAAAACCGTCTCGATCAAGTTC 57.273 40.909 0.00 0.00 0.00 3.01
560 625 1.530013 AACCGTCTACACAGGACCGG 61.530 60.000 0.00 0.00 35.33 5.28
567 632 3.607641 CGCGTAAAATAACCGTCTACACA 59.392 43.478 0.00 0.00 0.00 3.72
585 652 2.332654 GCAAATCAACCCCTCGCGT 61.333 57.895 5.77 0.00 0.00 6.01
591 658 1.672881 CAGATCTCGCAAATCAACCCC 59.327 52.381 0.00 0.00 0.00 4.95
595 662 4.142071 ACTCTAGCAGATCTCGCAAATCAA 60.142 41.667 16.20 0.17 0.00 2.57
602 669 1.066908 AGCAACTCTAGCAGATCTCGC 59.933 52.381 8.56 8.56 0.00 5.03
605 672 5.509501 GCATCTAAGCAACTCTAGCAGATCT 60.510 44.000 0.00 0.00 0.00 2.75
606 673 4.685628 GCATCTAAGCAACTCTAGCAGATC 59.314 45.833 0.00 0.00 0.00 2.75
610 677 3.893326 TGCATCTAAGCAACTCTAGCA 57.107 42.857 0.00 0.00 42.46 3.49
620 687 3.389221 GAGCTCCTAAGTGCATCTAAGC 58.611 50.000 0.87 0.00 34.89 3.09
621 688 3.637432 CGAGCTCCTAAGTGCATCTAAG 58.363 50.000 8.47 0.00 34.89 2.18
623 690 1.338337 GCGAGCTCCTAAGTGCATCTA 59.662 52.381 8.47 0.00 34.89 1.98
630 780 0.814457 CTGACAGCGAGCTCCTAAGT 59.186 55.000 8.47 1.57 0.00 2.24
642 792 1.287730 CCGAACACTCTGCTGACAGC 61.288 60.000 20.86 20.86 44.10 4.40
668 818 3.003378 AGCCGAACACTGCTTTTCTTTAC 59.997 43.478 0.00 0.00 32.94 2.01
703 853 1.685148 CCGTCTACTACCCCTACCAC 58.315 60.000 0.00 0.00 0.00 4.16
707 2097 0.855598 ATGGCCGTCTACTACCCCTA 59.144 55.000 0.00 0.00 0.00 3.53
721 2111 1.793714 CGTAAAACATGCGTCATGGCC 60.794 52.381 19.30 0.00 45.16 5.36
870 2261 3.308595 TGCGACTGTATTTTATTCTGGCG 59.691 43.478 0.00 0.00 34.15 5.69
887 2278 2.230864 GTTAATGCACGTCTTTGCGAC 58.769 47.619 0.00 0.00 46.20 5.19
1041 2447 1.000827 ACGCAGATGGAGATGATCGAC 60.001 52.381 0.00 0.00 0.00 4.20
1045 2451 0.319383 GCGACGCAGATGGAGATGAT 60.319 55.000 16.42 0.00 0.00 2.45
1095 2501 1.566018 GCAGCTTACCGCGAGTGTTT 61.566 55.000 8.23 0.00 45.59 2.83
1123 2529 1.271379 ACTCCGGGGAGAAAATGTGTG 60.271 52.381 21.16 0.00 44.53 3.82
1124 2530 1.003233 GACTCCGGGGAGAAAATGTGT 59.997 52.381 21.16 0.00 44.53 3.72
1125 2531 1.679032 GGACTCCGGGGAGAAAATGTG 60.679 57.143 21.16 0.00 44.53 3.21
1126 2532 0.618981 GGACTCCGGGGAGAAAATGT 59.381 55.000 21.16 0.00 44.53 2.71
1127 2533 0.462047 CGGACTCCGGGGAGAAAATG 60.462 60.000 21.16 2.87 44.15 2.32
1128 2534 1.905512 CGGACTCCGGGGAGAAAAT 59.094 57.895 21.16 0.00 44.15 1.82
1129 2535 3.384348 CGGACTCCGGGGAGAAAA 58.616 61.111 21.16 0.00 44.15 2.29
1144 2550 3.113322 CCACGAGTGTGTAATGTATCGG 58.887 50.000 2.36 0.00 44.92 4.18
1149 2555 1.508632 GTGCCACGAGTGTGTAATGT 58.491 50.000 2.36 0.00 44.92 2.71
1154 2580 3.161450 AGGGTGCCACGAGTGTGT 61.161 61.111 2.36 0.00 44.92 3.72
1156 2582 3.991051 CGAGGGTGCCACGAGTGT 61.991 66.667 2.36 0.00 39.84 3.55
1175 2606 1.210967 TGAAACCTGGAACCGAACAGT 59.789 47.619 0.00 0.00 32.90 3.55
1181 2612 0.804989 GCTGATGAAACCTGGAACCG 59.195 55.000 0.00 0.00 0.00 4.44
1527 2958 2.050351 ACGCTGGAGACGTTCACG 60.050 61.111 0.00 0.00 41.93 4.35
1695 3126 4.864334 GCCATGGACAGGGAGGCG 62.864 72.222 18.40 0.00 35.42 5.52
2058 3490 0.326264 AGAAGGGCTTGCTGTACCAG 59.674 55.000 0.00 0.00 34.12 4.00
2091 3523 2.544685 CCGAACATTGAGCTGGAGTAG 58.455 52.381 0.00 0.00 0.00 2.57
2232 3664 2.232452 GACCATACCATCTCCTCCATCG 59.768 54.545 0.00 0.00 0.00 3.84
2233 3665 3.513515 GAGACCATACCATCTCCTCCATC 59.486 52.174 0.00 0.00 36.18 3.51
2293 3767 8.791675 TCATTTCAGTAAAAATCACTGTGCATA 58.208 29.630 2.12 0.00 43.21 3.14
2306 3780 9.033481 CAAAATGTCAGCTTCATTTCAGTAAAA 57.967 29.630 20.06 0.00 42.31 1.52
2307 3781 8.196771 ACAAAATGTCAGCTTCATTTCAGTAAA 58.803 29.630 20.06 0.00 42.31 2.01
2317 3791 8.715191 AATAAAACAACAAAATGTCAGCTTCA 57.285 26.923 0.00 0.00 31.81 3.02
2348 3849 2.993863 ACTCACTAGGTTCCCCCAAATT 59.006 45.455 0.00 0.00 34.66 1.82
2359 3860 3.845781 CCATAATGGCACTCACTAGGT 57.154 47.619 0.00 0.00 0.00 3.08
2381 3882 6.327365 TCTTGATCTCATACTTGGCCTTGATA 59.673 38.462 3.32 0.00 0.00 2.15
2439 3940 4.141869 ACCTACACCGTCCCACAAATATAC 60.142 45.833 0.00 0.00 0.00 1.47
2550 4104 5.999205 AAAATGTCTTGCATTATGGGACA 57.001 34.783 0.00 0.00 46.29 4.02
2600 4154 0.384669 CCCTCCGTCCGATGTAAGAC 59.615 60.000 0.00 0.00 0.00 3.01
2601 4155 0.256752 TCCCTCCGTCCGATGTAAGA 59.743 55.000 0.00 0.00 0.00 2.10
2602 4156 0.669077 CTCCCTCCGTCCGATGTAAG 59.331 60.000 0.00 0.00 0.00 2.34
2603 4157 0.033796 ACTCCCTCCGTCCGATGTAA 60.034 55.000 0.00 0.00 0.00 2.41
2604 4158 0.839277 TACTCCCTCCGTCCGATGTA 59.161 55.000 0.00 0.00 0.00 2.29
2606 4160 1.783031 CGTACTCCCTCCGTCCGATG 61.783 65.000 0.00 0.00 0.00 3.84
2608 4162 1.613317 TACGTACTCCCTCCGTCCGA 61.613 60.000 0.00 0.00 36.12 4.55
2609 4163 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
2610 4164 0.107459 AGTACGTACTCCCTCCGTCC 60.107 60.000 22.45 0.00 36.12 4.79
2611 4165 2.604046 TAGTACGTACTCCCTCCGTC 57.396 55.000 30.53 0.00 37.73 4.79
2644 4222 8.576442 CCAAAGGTTACATGTTTCTCAGTTATT 58.424 33.333 2.30 0.00 0.00 1.40
2657 4235 5.389859 TTCTGCATTCCAAAGGTTACATG 57.610 39.130 0.00 0.00 0.00 3.21
2658 4236 5.539955 AGTTTCTGCATTCCAAAGGTTACAT 59.460 36.000 0.00 0.00 0.00 2.29
2660 4238 5.453567 AGTTTCTGCATTCCAAAGGTTAC 57.546 39.130 0.00 0.00 0.00 2.50
2671 4249 3.228188 TGGAGGACAAGTTTCTGCATT 57.772 42.857 0.00 0.00 0.00 3.56
2672 4250 2.957402 TGGAGGACAAGTTTCTGCAT 57.043 45.000 0.00 0.00 0.00 3.96
2785 4376 2.225491 GCAGCACAAAAATACTGACGGA 59.775 45.455 0.00 0.00 31.67 4.69
2840 4440 6.656693 ACTGTTGTGAGATAAATCCCTGAAAG 59.343 38.462 0.00 0.00 0.00 2.62
2956 4556 5.444613 GCGAGTGTAACAGTGACAATGTATG 60.445 44.000 9.24 0.00 41.43 2.39
2958 4558 3.985279 GCGAGTGTAACAGTGACAATGTA 59.015 43.478 9.24 0.00 41.43 2.29
3044 4644 7.116736 ACCTTTTTAGAAGACTTTCTGGAACA 58.883 34.615 0.26 0.00 43.41 3.18
3113 4713 2.685897 AGTACCTTTCAGCGCACAAAAA 59.314 40.909 11.47 3.21 0.00 1.94
3114 4714 2.289547 GAGTACCTTTCAGCGCACAAAA 59.710 45.455 11.47 5.91 0.00 2.44
3115 4715 1.871039 GAGTACCTTTCAGCGCACAAA 59.129 47.619 11.47 6.91 0.00 2.83
3116 4716 1.508632 GAGTACCTTTCAGCGCACAA 58.491 50.000 11.47 0.00 0.00 3.33
3117 4717 0.320421 GGAGTACCTTTCAGCGCACA 60.320 55.000 11.47 0.00 0.00 4.57
3118 4718 1.019805 GGGAGTACCTTTCAGCGCAC 61.020 60.000 11.47 0.00 35.85 5.34
3119 4719 1.295423 GGGAGTACCTTTCAGCGCA 59.705 57.895 11.47 0.00 35.85 6.09
3120 4720 4.203618 GGGAGTACCTTTCAGCGC 57.796 61.111 0.00 0.00 35.85 5.92
3190 4790 9.629878 CCTTCTGTATACTACTCCTTCTCTAAA 57.370 37.037 4.17 0.00 0.00 1.85
3191 4791 9.000978 TCCTTCTGTATACTACTCCTTCTCTAA 57.999 37.037 4.17 0.00 0.00 2.10
3192 4792 8.564364 TCCTTCTGTATACTACTCCTTCTCTA 57.436 38.462 4.17 0.00 0.00 2.43
3193 4793 7.128263 ACTCCTTCTGTATACTACTCCTTCTCT 59.872 40.741 4.17 0.00 0.00 3.10
3194 4794 7.284820 ACTCCTTCTGTATACTACTCCTTCTC 58.715 42.308 4.17 0.00 0.00 2.87
3195 4795 7.215743 ACTCCTTCTGTATACTACTCCTTCT 57.784 40.000 4.17 0.00 0.00 2.85
3196 4796 8.212995 ACTACTCCTTCTGTATACTACTCCTTC 58.787 40.741 4.17 0.00 0.00 3.46
3197 4797 8.104838 ACTACTCCTTCTGTATACTACTCCTT 57.895 38.462 4.17 0.00 0.00 3.36
3198 4798 7.695074 ACTACTCCTTCTGTATACTACTCCT 57.305 40.000 4.17 0.00 0.00 3.69
3282 4884 2.880890 GAGTTGTGACAATGAGCAGGTT 59.119 45.455 0.00 0.00 0.00 3.50
3437 5043 8.877864 AATAAGGGTCACAAATCATAGTGAAA 57.122 30.769 0.00 0.00 45.38 2.69
3480 5086 3.181507 TGCTGCTTATGTTCGCTTCAATC 60.182 43.478 0.00 0.00 0.00 2.67
3542 5148 3.011760 GCGACAGTTACGGCAGTGC 62.012 63.158 6.55 6.55 0.00 4.40
3543 5149 1.372997 AGCGACAGTTACGGCAGTG 60.373 57.895 0.00 0.00 0.00 3.66
3544 5150 1.372997 CAGCGACAGTTACGGCAGT 60.373 57.895 0.00 0.00 0.00 4.40
3573 5179 4.753107 ACAACCACCATTACAGAAAGTACG 59.247 41.667 0.00 0.00 30.91 3.67
3612 5218 3.123620 CTCCTGCGAAGGCACAGC 61.124 66.667 3.77 0.00 46.21 4.40
3706 5315 6.952773 TTTATTAGCAACCAAGAACACAGT 57.047 33.333 0.00 0.00 0.00 3.55
3774 5383 5.572896 CGCCATTGTCTTCTTTTGATTTACC 59.427 40.000 0.00 0.00 0.00 2.85
3797 5406 0.723414 ATTGCATTGAGACAGCGTCG 59.277 50.000 0.00 0.00 37.67 5.12
3854 5463 5.582665 GGACTTCTCGAAGCTATTTGTGATT 59.417 40.000 6.58 0.00 41.99 2.57
4006 5615 3.910568 ATGAGAGGAAAAGAGCTGGAG 57.089 47.619 0.00 0.00 0.00 3.86
4154 5777 3.754323 TCAACGAGTGACCAAGTGTTTTT 59.246 39.130 0.00 0.00 0.00 1.94
4155 5778 3.340034 TCAACGAGTGACCAAGTGTTTT 58.660 40.909 0.00 0.00 0.00 2.43
4156 5779 2.980568 TCAACGAGTGACCAAGTGTTT 58.019 42.857 0.00 0.00 0.00 2.83
4157 5780 2.684001 TCAACGAGTGACCAAGTGTT 57.316 45.000 0.00 0.00 0.00 3.32
4338 5961 3.678662 CGTAAGACGCTACTACTTGTCC 58.321 50.000 0.00 0.00 43.02 4.02
4374 5997 2.871633 GGGTGAGAGTAGACGCTACTAC 59.128 54.545 16.19 11.57 41.87 2.73
4375 5998 2.158842 GGGGTGAGAGTAGACGCTACTA 60.159 54.545 16.19 0.92 0.00 1.82
4384 6007 2.498078 GGAGTTTCAGGGGTGAGAGTAG 59.502 54.545 0.00 0.00 0.00 2.57
4440 6063 1.414181 CGCCATGTTAGGGACTCAGAT 59.586 52.381 0.00 0.00 41.75 2.90
4446 6069 0.963355 TTTGGCGCCATGTTAGGGAC 60.963 55.000 33.25 0.00 0.00 4.46
4488 6117 1.661112 GTAGCTAGCAAACCTTGAGCG 59.339 52.381 18.83 0.00 36.10 5.03
4511 6140 2.552743 GGTGTGTCCAAAGAAGTTAGCC 59.447 50.000 0.00 0.00 35.97 3.93
4512 6141 3.211045 TGGTGTGTCCAAAGAAGTTAGC 58.789 45.455 0.00 0.00 44.12 3.09
4513 6142 3.251004 GCTGGTGTGTCCAAAGAAGTTAG 59.749 47.826 0.00 0.00 46.59 2.34
4593 6226 0.412244 AGGTACTCCAGGCCTGTACA 59.588 55.000 30.63 13.55 38.50 2.90
4604 6240 1.741770 CGCCTTGTGCAGGTACTCC 60.742 63.158 0.00 0.00 46.07 3.85
4801 6437 2.107552 TCTGGTTTTGGTTAGTGGGGAG 59.892 50.000 0.00 0.00 0.00 4.30
4804 6440 3.072476 TCTCTCTGGTTTTGGTTAGTGGG 59.928 47.826 0.00 0.00 0.00 4.61
4821 6457 3.534524 GCACTTCAGTTTGCTTCTCTC 57.465 47.619 0.00 0.00 35.74 3.20
4851 6508 1.807573 GTACCTGCAGAGCTCGTGC 60.808 63.158 23.22 23.22 41.59 5.34
4856 6513 2.223803 AGTGTAGTACCTGCAGAGCT 57.776 50.000 17.39 12.19 0.00 4.09
4857 6514 2.732597 CGAAGTGTAGTACCTGCAGAGC 60.733 54.545 17.39 4.59 0.00 4.09
5043 6700 3.384532 TTGAGGTCGTACCGCCCC 61.385 66.667 5.60 0.00 44.90 5.80
5180 6837 1.374758 GAACCGTGCACCCTCTCAG 60.375 63.158 12.15 0.00 0.00 3.35
5181 6838 2.741092 GAACCGTGCACCCTCTCA 59.259 61.111 12.15 0.00 0.00 3.27
5219 6876 1.480219 GCTTTCCGCATACTCGTCGG 61.480 60.000 0.00 0.00 44.16 4.79
5220 6877 0.800683 TGCTTTCCGCATACTCGTCG 60.801 55.000 0.00 0.00 45.47 5.12
5221 6878 3.044809 TGCTTTCCGCATACTCGTC 57.955 52.632 0.00 0.00 45.47 4.20
5316 6976 5.416083 TCGGATAAATCACAACGACATTCT 58.584 37.500 0.00 0.00 0.00 2.40
5392 7054 6.163135 AGAAGAGGGAATAGATACCGTTTG 57.837 41.667 0.00 0.00 0.00 2.93
5403 7065 4.302067 AGCTCAATGGAGAAGAGGGAATA 58.698 43.478 0.00 0.00 44.26 1.75
5415 7077 0.253347 AGAAGGGGGAGCTCAATGGA 60.253 55.000 17.19 0.00 0.00 3.41
5418 7080 1.995542 TCAAAGAAGGGGGAGCTCAAT 59.004 47.619 17.19 0.00 0.00 2.57
5440 7102 2.450609 TTTAGAGGAAGCGACACACC 57.549 50.000 0.00 0.00 0.00 4.16
5456 7118 6.607689 CGACACACAATCAAAAGCCTATTTA 58.392 36.000 0.00 0.00 0.00 1.40
5472 7134 0.103390 TTTCGAGGAAGCGACACACA 59.897 50.000 0.00 0.00 40.42 3.72
5480 7142 3.953874 GAAAGCCTATTTCGAGGAAGC 57.046 47.619 0.00 0.00 39.15 3.86
5642 7307 1.350193 CAGCATCGTAGTGTCGCTTT 58.650 50.000 0.00 0.00 0.00 3.51
5662 7327 2.577112 CTACAGTGCGTCGGCTCG 60.577 66.667 0.00 0.00 40.82 5.03
5673 7338 2.166459 TGAATGCGCTTCTAGCTACAGT 59.834 45.455 9.73 0.00 39.60 3.55
5681 7346 2.874086 CCACATGATGAATGCGCTTCTA 59.126 45.455 9.73 2.14 40.22 2.10
5692 7357 2.190313 GCCTCGGCCACATGATGA 59.810 61.111 2.24 0.00 34.56 2.92
5717 7382 2.101965 CTCTCGAGGCAGCGTGAG 59.898 66.667 13.56 14.23 42.80 3.51
5806 7477 4.288531 GACGAGTCGTAATAAGATGGTGG 58.711 47.826 19.93 0.00 41.37 4.61
5823 7494 1.986378 GACATCGACACTTTGGACGAG 59.014 52.381 0.00 0.00 34.99 4.18
5838 7509 1.135689 AGTTTTTGCGGCGATGACATC 60.136 47.619 12.98 5.28 0.00 3.06
5896 7567 2.433239 GCGGACTTCCTTAACCATAGGA 59.567 50.000 0.00 0.00 40.01 2.94
5903 7574 2.074576 GACCTTGCGGACTTCCTTAAC 58.925 52.381 0.00 0.00 0.00 2.01
5905 7576 0.611714 GGACCTTGCGGACTTCCTTA 59.388 55.000 0.00 0.00 0.00 2.69
5982 7653 5.978814 ACATATCCTCTTCGCTTGTACTTT 58.021 37.500 0.00 0.00 0.00 2.66
5983 7654 5.599999 ACATATCCTCTTCGCTTGTACTT 57.400 39.130 0.00 0.00 0.00 2.24
6222 7912 1.548719 CCTAACACCGTGTCATGGAGA 59.451 52.381 18.36 0.00 0.00 3.71
6240 7930 3.742433 CAGACGCTTCTGGAATATCCT 57.258 47.619 12.26 0.00 45.06 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.