Multiple sequence alignment - TraesCS3D01G284000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G284000 chr3D 100.000 5418 0 0 1 5418 392961044 392955627 0.000000e+00 10006
1 TraesCS3D01G284000 chr3B 93.789 3896 152 35 766 4606 512746432 512742572 0.000000e+00 5771
2 TraesCS3D01G284000 chr3B 89.082 403 25 6 295 696 512746937 512746553 2.930000e-132 483
3 TraesCS3D01G284000 chr3B 77.174 368 57 19 4740 5084 515251668 515251305 7.160000e-44 189
4 TraesCS3D01G284000 chr3B 89.831 118 8 3 4518 4635 670200684 670200797 1.220000e-31 148
5 TraesCS3D01G284000 chr3A 93.512 2944 113 22 1843 4740 512558975 512556064 0.000000e+00 4307
6 TraesCS3D01G284000 chr3A 87.251 1906 86 65 1 1847 512562760 512560953 0.000000e+00 2028
7 TraesCS3D01G284000 chr2D 87.231 697 68 9 4739 5418 177111645 177112337 0.000000e+00 774
8 TraesCS3D01G284000 chr2D 84.615 637 64 25 4791 5418 490580419 490581030 2.160000e-168 603
9 TraesCS3D01G284000 chr2D 89.184 490 43 8 4937 5418 557094108 557093621 2.160000e-168 603
10 TraesCS3D01G284000 chr2D 83.173 208 23 4 4746 4942 187588807 187588601 4.310000e-41 180
11 TraesCS3D01G284000 chr4B 84.091 704 64 19 4732 5418 600372367 600373039 2.130000e-178 636
12 TraesCS3D01G284000 chr4B 76.643 715 117 28 4740 5418 657794291 657793591 3.110000e-92 350
13 TraesCS3D01G284000 chr7D 75.882 709 115 30 4741 5417 263977792 263978476 1.470000e-80 311
14 TraesCS3D01G284000 chr6B 76.603 624 107 28 4818 5418 177811206 177811813 1.900000e-79 307
15 TraesCS3D01G284000 chr6D 75.670 522 96 22 4818 5317 95017752 95017240 1.170000e-56 231
16 TraesCS3D01G284000 chr5B 77.778 369 52 21 4741 5084 592795 592432 3.310000e-47 200
17 TraesCS3D01G284000 chr4A 83.019 212 26 3 4741 4942 699003135 699002924 3.330000e-42 183
18 TraesCS3D01G284000 chr7B 79.848 263 31 16 4739 4980 176742820 176742559 7.210000e-39 172
19 TraesCS3D01G284000 chrUn 87.786 131 14 2 4739 4868 29750472 29750601 9.400000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G284000 chr3D 392955627 392961044 5417 True 10006.0 10006 100.0000 1 5418 1 chr3D.!!$R1 5417
1 TraesCS3D01G284000 chr3B 512742572 512746937 4365 True 3127.0 5771 91.4355 295 4606 2 chr3B.!!$R2 4311
2 TraesCS3D01G284000 chr3A 512556064 512562760 6696 True 3167.5 4307 90.3815 1 4740 2 chr3A.!!$R1 4739
3 TraesCS3D01G284000 chr2D 177111645 177112337 692 False 774.0 774 87.2310 4739 5418 1 chr2D.!!$F1 679
4 TraesCS3D01G284000 chr2D 490580419 490581030 611 False 603.0 603 84.6150 4791 5418 1 chr2D.!!$F2 627
5 TraesCS3D01G284000 chr4B 600372367 600373039 672 False 636.0 636 84.0910 4732 5418 1 chr4B.!!$F1 686
6 TraesCS3D01G284000 chr4B 657793591 657794291 700 True 350.0 350 76.6430 4740 5418 1 chr4B.!!$R1 678
7 TraesCS3D01G284000 chr7D 263977792 263978476 684 False 311.0 311 75.8820 4741 5417 1 chr7D.!!$F1 676
8 TraesCS3D01G284000 chr6B 177811206 177811813 607 False 307.0 307 76.6030 4818 5418 1 chr6B.!!$F1 600
9 TraesCS3D01G284000 chr6D 95017240 95017752 512 True 231.0 231 75.6700 4818 5317 1 chr6D.!!$R1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.249155 TCGGCTCGAACGACACTTTT 60.249 50.000 7.68 0.00 35.12 2.27 F
810 911 0.661020 GGCTAGCTCGTCTCACTCTC 59.339 60.000 15.72 0.00 0.00 3.20 F
1989 4106 0.521291 TTTTGCTCATACTGTGCGGC 59.479 50.000 0.00 0.00 39.51 6.53 F
2962 5101 0.254178 ATGGTCATGCAGGGACACTC 59.746 55.000 19.36 6.42 37.00 3.51 F
2963 5102 1.448540 GGTCATGCAGGGACACTCG 60.449 63.158 19.36 0.00 37.00 4.18 F
3656 5815 3.252701 ACTGTATTACTAGCGTCGATGGG 59.747 47.826 6.79 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1366 0.180406 CACGGGAATGGGGGAGTAAG 59.820 60.000 0.00 0.0 0.00 2.34 R
2688 4823 0.035820 TTATCTTGACCACCACGGCC 60.036 55.000 0.00 0.0 39.03 6.13 R
3646 5805 0.462047 ACCATTTCTCCCATCGACGC 60.462 55.000 0.00 0.0 0.00 5.19 R
3790 5949 0.541392 CCATGATGTTCCCGTCCAGA 59.459 55.000 0.00 0.0 0.00 3.86 R
3988 6147 1.022735 ATAGCTGGTACGTCTCGGTG 58.977 55.000 0.00 0.0 0.00 4.94 R
4927 7118 1.550524 AGAACATTCACCTAGCGCAGA 59.449 47.619 11.47 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.105134 TCACTCCTTTTACAAGCCCGAA 59.895 45.455 0.00 0.00 0.00 4.30
52 53 0.249155 TCGGCTCGAACGACACTTTT 60.249 50.000 7.68 0.00 35.12 2.27
54 55 1.499049 GGCTCGAACGACACTTTTCT 58.501 50.000 0.00 0.00 0.00 2.52
65 66 4.038763 ACGACACTTTTCTGTATCTCCACA 59.961 41.667 0.00 0.00 0.00 4.17
93 94 1.824852 CTAGCCCAAAGCCCGAAAATT 59.175 47.619 0.00 0.00 45.47 1.82
103 104 3.701664 AGCCCGAAAATTCTCCTGAAAT 58.298 40.909 0.00 0.00 35.63 2.17
110 111 7.315142 CCGAAAATTCTCCTGAAATCATGAAA 58.685 34.615 0.00 0.00 35.63 2.69
120 121 7.775120 TCCTGAAATCATGAAAAAGATAAGCC 58.225 34.615 0.00 0.00 0.00 4.35
121 122 6.982724 CCTGAAATCATGAAAAAGATAAGCCC 59.017 38.462 0.00 0.00 0.00 5.19
122 123 6.563422 TGAAATCATGAAAAAGATAAGCCCG 58.437 36.000 0.00 0.00 0.00 6.13
123 124 6.376864 TGAAATCATGAAAAAGATAAGCCCGA 59.623 34.615 0.00 0.00 0.00 5.14
124 125 6.773976 AATCATGAAAAAGATAAGCCCGAA 57.226 33.333 0.00 0.00 0.00 4.30
125 126 6.773976 ATCATGAAAAAGATAAGCCCGAAA 57.226 33.333 0.00 0.00 0.00 3.46
126 127 5.949735 TCATGAAAAAGATAAGCCCGAAAC 58.050 37.500 0.00 0.00 0.00 2.78
127 128 4.776795 TGAAAAAGATAAGCCCGAAACC 57.223 40.909 0.00 0.00 0.00 3.27
128 129 3.508402 TGAAAAAGATAAGCCCGAAACCC 59.492 43.478 0.00 0.00 0.00 4.11
129 130 2.891191 AAAGATAAGCCCGAAACCCA 57.109 45.000 0.00 0.00 0.00 4.51
130 131 2.891191 AAGATAAGCCCGAAACCCAA 57.109 45.000 0.00 0.00 0.00 4.12
131 132 2.891191 AGATAAGCCCGAAACCCAAA 57.109 45.000 0.00 0.00 0.00 3.28
132 133 2.443416 AGATAAGCCCGAAACCCAAAC 58.557 47.619 0.00 0.00 0.00 2.93
133 134 2.041216 AGATAAGCCCGAAACCCAAACT 59.959 45.455 0.00 0.00 0.00 2.66
134 135 3.264964 AGATAAGCCCGAAACCCAAACTA 59.735 43.478 0.00 0.00 0.00 2.24
135 136 2.597578 AAGCCCGAAACCCAAACTAT 57.402 45.000 0.00 0.00 0.00 2.12
136 137 2.124277 AGCCCGAAACCCAAACTATC 57.876 50.000 0.00 0.00 0.00 2.08
137 138 1.633945 AGCCCGAAACCCAAACTATCT 59.366 47.619 0.00 0.00 0.00 1.98
138 139 2.041216 AGCCCGAAACCCAAACTATCTT 59.959 45.455 0.00 0.00 0.00 2.40
139 140 2.823747 GCCCGAAACCCAAACTATCTTT 59.176 45.455 0.00 0.00 0.00 2.52
140 141 3.257375 GCCCGAAACCCAAACTATCTTTT 59.743 43.478 0.00 0.00 0.00 2.27
141 142 4.805219 CCCGAAACCCAAACTATCTTTTG 58.195 43.478 0.00 0.00 36.40 2.44
157 158 2.837532 TTTGGGCTGAAAAATGAGGC 57.162 45.000 0.00 0.00 0.00 4.70
161 162 0.965363 GGCTGAAAAATGAGGCCCGA 60.965 55.000 0.00 0.00 37.12 5.14
162 163 0.887933 GCTGAAAAATGAGGCCCGAA 59.112 50.000 0.00 0.00 0.00 4.30
163 164 1.478105 GCTGAAAAATGAGGCCCGAAT 59.522 47.619 0.00 0.00 0.00 3.34
164 165 2.736400 GCTGAAAAATGAGGCCCGAATG 60.736 50.000 0.00 0.00 0.00 2.67
165 166 1.204467 TGAAAAATGAGGCCCGAATGC 59.796 47.619 0.00 0.00 0.00 3.56
166 167 1.204467 GAAAAATGAGGCCCGAATGCA 59.796 47.619 0.00 0.00 0.00 3.96
208 209 4.564110 GGGCCGGGCTGTCCATAC 62.564 72.222 28.80 4.21 34.36 2.39
210 211 4.564110 GCCGGGCTGTCCATACCC 62.564 72.222 12.87 0.00 40.51 3.69
211 212 3.087253 CCGGGCTGTCCATACCCA 61.087 66.667 0.00 0.00 44.49 4.51
213 214 2.919043 GGGCTGTCCATACCCAGG 59.081 66.667 0.00 0.00 43.64 4.45
214 215 2.001269 GGGCTGTCCATACCCAGGT 61.001 63.158 0.00 0.00 43.64 4.00
231 232 2.809119 CAGGTCTATCGCACGAGTCTAT 59.191 50.000 0.00 0.00 0.00 1.98
235 236 2.480802 TCTATCGCACGAGTCTATGCTC 59.519 50.000 12.74 0.00 39.79 4.26
238 239 1.068250 GCACGAGTCTATGCTCCCC 59.932 63.158 8.57 0.00 38.84 4.81
240 241 2.336809 CGAGTCTATGCTCCCCGC 59.663 66.667 0.00 0.00 39.77 6.13
263 272 4.212004 CGAAAATCTCGTGATATGCCACAT 59.788 41.667 0.00 0.00 42.89 3.21
328 342 1.477558 CCGTGTACCCTCTACCCGTAT 60.478 57.143 0.00 0.00 0.00 3.06
329 343 2.301346 CGTGTACCCTCTACCCGTATT 58.699 52.381 0.00 0.00 0.00 1.89
638 684 2.421739 GTCAGCCACTGTCGGTGT 59.578 61.111 10.90 0.00 43.94 4.16
646 692 1.606889 ACTGTCGGTGTCCTCTCCC 60.607 63.158 0.00 0.00 0.00 4.30
718 790 0.737715 CGCTGCTCTACCACTTCCAC 60.738 60.000 0.00 0.00 0.00 4.02
723 795 2.165641 TGCTCTACCACTTCCACATACG 59.834 50.000 0.00 0.00 0.00 3.06
724 796 2.165845 GCTCTACCACTTCCACATACGT 59.834 50.000 0.00 0.00 0.00 3.57
727 799 2.642139 ACCACTTCCACATACGTACG 57.358 50.000 15.01 15.01 0.00 3.67
728 800 1.274596 CCACTTCCACATACGTACGC 58.725 55.000 16.72 0.00 0.00 4.42
729 801 0.911856 CACTTCCACATACGTACGCG 59.088 55.000 16.72 3.53 44.93 6.01
730 802 0.799534 ACTTCCACATACGTACGCGC 60.800 55.000 16.72 0.00 42.83 6.86
732 804 2.887463 TTCCACATACGTACGCGCCC 62.887 60.000 16.72 0.00 42.83 6.13
733 805 3.317036 CACATACGTACGCGCCCG 61.317 66.667 16.72 11.77 42.83 6.13
734 806 4.557605 ACATACGTACGCGCCCGG 62.558 66.667 16.72 0.00 42.83 5.73
770 871 4.097361 GGTTCGCCACCTCCCTCC 62.097 72.222 0.00 0.00 43.29 4.30
771 872 4.097361 GTTCGCCACCTCCCTCCC 62.097 72.222 0.00 0.00 0.00 4.30
772 873 4.649705 TTCGCCACCTCCCTCCCA 62.650 66.667 0.00 0.00 0.00 4.37
775 876 3.403558 GCCACCTCCCTCCCACTC 61.404 72.222 0.00 0.00 0.00 3.51
776 877 2.452114 CCACCTCCCTCCCACTCT 59.548 66.667 0.00 0.00 0.00 3.24
786 887 1.473258 CTCCCACTCTCTCTCACTGG 58.527 60.000 0.00 0.00 0.00 4.00
791 892 1.067706 CACTCTCTCTCACTGGCACTG 60.068 57.143 0.00 0.00 0.00 3.66
810 911 0.661020 GGCTAGCTCGTCTCACTCTC 59.339 60.000 15.72 0.00 0.00 3.20
811 912 0.661020 GCTAGCTCGTCTCACTCTCC 59.339 60.000 7.70 0.00 0.00 3.71
900 1001 1.878522 GCGCATACAGACTCCACGG 60.879 63.158 0.30 0.00 0.00 4.94
995 1099 4.215742 CGCGCGAGGGGGATTGTA 62.216 66.667 28.94 0.00 40.85 2.41
996 1100 2.280186 GCGCGAGGGGGATTGTAG 60.280 66.667 12.10 0.00 0.00 2.74
1215 1322 2.202878 GCTCGTTCGCAGCCCATA 60.203 61.111 0.00 0.00 0.00 2.74
1218 1325 0.861837 CTCGTTCGCAGCCCATATTC 59.138 55.000 0.00 0.00 0.00 1.75
1258 1366 1.006337 TGGCGTGTACACCGGTTAC 60.006 57.895 20.11 11.95 0.00 2.50
1261 1369 1.067915 GGCGTGTACACCGGTTACTTA 60.068 52.381 20.11 0.00 0.00 2.24
1273 1381 2.158856 CGGTTACTTACTCCCCCATTCC 60.159 54.545 0.00 0.00 0.00 3.01
1280 1388 2.530661 TCCCCCATTCCCGTGTGT 60.531 61.111 0.00 0.00 0.00 3.72
1284 1392 1.374947 CCCATTCCCGTGTGTGAGT 59.625 57.895 0.00 0.00 0.00 3.41
1389 1497 3.276857 CGACCTGGCTTCTACAGTACTA 58.723 50.000 0.00 0.00 34.16 1.82
1390 1498 3.065095 CGACCTGGCTTCTACAGTACTAC 59.935 52.174 0.00 0.00 34.16 2.73
1392 1500 3.245514 ACCTGGCTTCTACAGTACTACCA 60.246 47.826 0.00 0.00 34.16 3.25
1393 1501 3.381908 CCTGGCTTCTACAGTACTACCAG 59.618 52.174 0.00 4.52 42.47 4.00
1394 1502 4.017808 CTGGCTTCTACAGTACTACCAGT 58.982 47.826 0.00 0.00 38.87 4.00
1410 1522 1.346395 CCAGTGTAGTGTGTTAGGCCA 59.654 52.381 5.01 0.00 0.00 5.36
1828 1952 1.591504 CGGTGCCCTGCGGTTTTATT 61.592 55.000 0.00 0.00 0.00 1.40
1829 1953 1.465794 GGTGCCCTGCGGTTTTATTA 58.534 50.000 0.00 0.00 0.00 0.98
1830 1954 2.028876 GGTGCCCTGCGGTTTTATTAT 58.971 47.619 0.00 0.00 0.00 1.28
1880 3987 4.992515 CCGTTTAGCCGGTGTGTA 57.007 55.556 1.90 0.00 43.07 2.90
1884 3991 2.137523 CGTTTAGCCGGTGTGTAAGTT 58.862 47.619 1.90 0.00 0.00 2.66
1885 3992 2.096614 CGTTTAGCCGGTGTGTAAGTTG 60.097 50.000 1.90 0.00 0.00 3.16
1886 3993 3.132925 GTTTAGCCGGTGTGTAAGTTGA 58.867 45.455 1.90 0.00 0.00 3.18
1887 3994 2.736144 TAGCCGGTGTGTAAGTTGAG 57.264 50.000 1.90 0.00 0.00 3.02
1889 3996 1.140252 AGCCGGTGTGTAAGTTGAGTT 59.860 47.619 1.90 0.00 0.00 3.01
1890 3997 1.263217 GCCGGTGTGTAAGTTGAGTTG 59.737 52.381 1.90 0.00 0.00 3.16
1891 3998 2.557317 CCGGTGTGTAAGTTGAGTTGT 58.443 47.619 0.00 0.00 0.00 3.32
1892 3999 2.286833 CCGGTGTGTAAGTTGAGTTGTG 59.713 50.000 0.00 0.00 0.00 3.33
1893 4000 2.933906 CGGTGTGTAAGTTGAGTTGTGT 59.066 45.455 0.00 0.00 0.00 3.72
1894 4001 3.242284 CGGTGTGTAAGTTGAGTTGTGTG 60.242 47.826 0.00 0.00 0.00 3.82
1895 4002 3.936453 GGTGTGTAAGTTGAGTTGTGTGA 59.064 43.478 0.00 0.00 0.00 3.58
1896 4003 4.201783 GGTGTGTAAGTTGAGTTGTGTGAC 60.202 45.833 0.00 0.00 0.00 3.67
1897 4004 3.936453 TGTGTAAGTTGAGTTGTGTGACC 59.064 43.478 0.00 0.00 0.00 4.02
1898 4005 3.936453 GTGTAAGTTGAGTTGTGTGACCA 59.064 43.478 0.00 0.00 0.00 4.02
1899 4006 4.393680 GTGTAAGTTGAGTTGTGTGACCAA 59.606 41.667 0.00 0.00 0.00 3.67
1900 4007 5.065988 GTGTAAGTTGAGTTGTGTGACCAAT 59.934 40.000 0.00 0.00 0.00 3.16
1901 4008 4.900635 AAGTTGAGTTGTGTGACCAATC 57.099 40.909 0.00 0.00 0.00 2.67
1902 4009 3.214328 AGTTGAGTTGTGTGACCAATCC 58.786 45.455 0.00 0.00 0.00 3.01
1903 4010 2.948979 GTTGAGTTGTGTGACCAATCCA 59.051 45.455 0.00 0.00 0.00 3.41
1904 4011 3.507162 TGAGTTGTGTGACCAATCCAT 57.493 42.857 0.00 0.00 0.00 3.41
1905 4012 3.411446 TGAGTTGTGTGACCAATCCATC 58.589 45.455 0.00 0.00 0.00 3.51
1913 4020 4.101585 GTGTGACCAATCCATCTCCATCTA 59.898 45.833 0.00 0.00 0.00 1.98
1917 4024 5.013495 TGACCAATCCATCTCCATCTAATCC 59.987 44.000 0.00 0.00 0.00 3.01
1980 4087 4.260990 CGTGGTCAAACACTTTTGCTCATA 60.261 41.667 0.00 0.00 41.78 2.15
1981 4088 4.976116 GTGGTCAAACACTTTTGCTCATAC 59.024 41.667 0.00 0.00 41.78 2.39
1982 4089 4.887071 TGGTCAAACACTTTTGCTCATACT 59.113 37.500 0.00 0.00 41.78 2.12
1983 4090 5.215160 GGTCAAACACTTTTGCTCATACTG 58.785 41.667 0.00 0.00 41.78 2.74
1984 4091 5.221048 GGTCAAACACTTTTGCTCATACTGT 60.221 40.000 0.00 0.00 41.78 3.55
1989 4106 0.521291 TTTTGCTCATACTGTGCGGC 59.479 50.000 0.00 0.00 39.51 6.53
1995 4112 2.508439 ATACTGTGCGGCGTTCGG 60.508 61.111 9.37 9.65 39.69 4.30
2013 4130 1.408969 GGGGCCTGTGTTCTTCAAAA 58.591 50.000 0.84 0.00 0.00 2.44
2024 4141 2.952310 GTTCTTCAAAAGTGGAGCTGGT 59.048 45.455 0.00 0.00 29.24 4.00
2025 4142 4.134563 GTTCTTCAAAAGTGGAGCTGGTA 58.865 43.478 0.00 0.00 29.24 3.25
2026 4143 3.740115 TCTTCAAAAGTGGAGCTGGTAC 58.260 45.455 0.00 0.00 29.24 3.34
2049 4166 2.919666 GTGAAACGGTCATGGATTGG 57.080 50.000 0.00 0.00 38.90 3.16
2289 4420 1.769026 TCTCTACTAGTGGCCTGCAG 58.231 55.000 6.78 6.78 0.00 4.41
2355 4486 3.808726 TGTTTGGAACTATACGTGCGTTT 59.191 39.130 1.66 0.00 0.00 3.60
2461 4592 8.887717 GCTCATACAGTAGATCTTTGTTTTCAT 58.112 33.333 15.21 3.60 0.00 2.57
2539 4674 9.022884 TGACTGTCAATTTTGATGAATGGAATA 57.977 29.630 8.27 0.00 39.73 1.75
2580 4715 1.276622 GGAAGAGAAGCCACAGGGTA 58.723 55.000 0.00 0.00 36.17 3.69
2619 4754 4.947147 GTGGTGGAAGCGGCACCA 62.947 66.667 13.35 13.35 45.63 4.17
2688 4823 2.251409 ATGATCGGCTTGACATGGAG 57.749 50.000 0.00 0.00 0.00 3.86
2697 4832 2.436646 GACATGGAGGCCGTGGTG 60.437 66.667 10.19 0.00 44.23 4.17
2700 4835 3.717294 ATGGAGGCCGTGGTGGTC 61.717 66.667 0.00 0.00 45.43 4.02
2783 4922 1.880027 CCTTGCTCAACTTTTAGCGGT 59.120 47.619 0.00 0.00 41.77 5.68
2877 5016 1.808945 CGGAAAGGCCTCATCATATGC 59.191 52.381 5.23 0.00 0.00 3.14
2899 5038 1.451504 CTGTGTTGTCCCCTGCTCA 59.548 57.895 0.00 0.00 0.00 4.26
2910 5049 0.464013 CCCTGCTCATGCCTTCTCTG 60.464 60.000 0.00 0.00 38.71 3.35
2929 5068 4.608269 TCTGGCCTAGAGATATGATCTGG 58.392 47.826 3.32 0.00 40.38 3.86
2962 5101 0.254178 ATGGTCATGCAGGGACACTC 59.746 55.000 19.36 6.42 37.00 3.51
2963 5102 1.448540 GGTCATGCAGGGACACTCG 60.449 63.158 19.36 0.00 37.00 4.18
3021 5164 3.896648 TTCGTTCTGAATTTCTGGTGC 57.103 42.857 0.00 0.00 0.00 5.01
3217 5370 4.208686 CAGTACGCCCCTCGCCTC 62.209 72.222 0.00 0.00 43.23 4.70
3656 5815 3.252701 ACTGTATTACTAGCGTCGATGGG 59.747 47.826 6.79 0.00 0.00 4.00
3657 5816 3.479489 TGTATTACTAGCGTCGATGGGA 58.521 45.455 6.79 0.00 0.00 4.37
3681 5840 5.481473 AGAAATGGTGAGTAACAATTGGCAT 59.519 36.000 10.83 0.00 32.36 4.40
4054 6213 3.084786 CCCTGAACTCTCACCATTTTCC 58.915 50.000 0.00 0.00 0.00 3.13
4174 6340 0.547471 TCAGGCTGTGGAAGATGGGA 60.547 55.000 15.27 0.00 0.00 4.37
4207 6373 0.930742 CTCTGATAGCGTTCGACGGC 60.931 60.000 8.96 4.40 42.82 5.68
4484 6652 1.003580 ACAGTGATCCGGTGCAAGAAT 59.996 47.619 0.00 0.00 0.00 2.40
4606 6774 6.968250 AGTAGAAACTACTCATGGCGTATAC 58.032 40.000 5.73 0.00 32.84 1.47
4607 6775 5.847111 AGAAACTACTCATGGCGTATACA 57.153 39.130 3.32 0.00 0.00 2.29
4608 6776 6.406692 AGAAACTACTCATGGCGTATACAT 57.593 37.500 3.32 0.00 0.00 2.29
4609 6777 7.520451 AGAAACTACTCATGGCGTATACATA 57.480 36.000 3.32 0.00 0.00 2.29
4711 6879 4.789012 TTCTTTGGCTCCAATGATGAAC 57.211 40.909 15.22 0.00 39.00 3.18
4848 7016 2.135139 CTTGTCGCACGGTGCATATAT 58.865 47.619 30.23 0.00 45.36 0.86
4897 7088 4.012895 GTGTGACAACTGGCGGCG 62.013 66.667 0.51 0.51 0.00 6.46
4955 7160 4.919754 GCTAGGTGAATGTTCTTTTTGCAG 59.080 41.667 0.00 0.00 0.00 4.41
4970 7175 0.696501 TGCAGAAACCCCCTAAGGTC 59.303 55.000 0.00 0.00 40.05 3.85
4977 7182 6.592870 CAGAAACCCCCTAAGGTCTAATTAG 58.407 44.000 6.11 6.11 40.05 1.73
4981 7186 4.597940 ACCCCCTAAGGTCTAATTAGATGC 59.402 45.833 17.95 6.51 33.81 3.91
4987 7192 5.552870 AAGGTCTAATTAGATGCCACGAT 57.447 39.130 17.95 2.29 34.39 3.73
4994 7199 3.552132 TTAGATGCCACGATTAAGCCA 57.448 42.857 0.00 0.00 0.00 4.75
5004 7209 5.334414 GCCACGATTAAGCCATTTCTCTATG 60.334 44.000 0.00 0.00 0.00 2.23
5110 7326 5.284861 TCTGGACTAACAGTACTTTGCAA 57.715 39.130 0.00 0.00 39.48 4.08
5160 7376 2.191128 ACCTCTCGCTCTGCAATTTT 57.809 45.000 0.00 0.00 0.00 1.82
5308 7544 3.086818 TCGAAGACGTGAACATGAACA 57.913 42.857 0.00 0.00 40.69 3.18
5319 7555 8.728088 ACGTGAACATGAACATTTTCTAATTC 57.272 30.769 0.00 0.00 30.88 2.17
5402 7643 3.877559 TCAGGACCACAAGAATGCATAG 58.122 45.455 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.362797 TGTCGTTCGAGCCGAGCT 61.363 61.111 9.20 0.00 43.88 4.09
35 36 1.192534 CAGAAAAGTGTCGTTCGAGCC 59.807 52.381 0.00 0.00 0.00 4.70
52 53 1.139654 GCCTGCATGTGGAGATACAGA 59.860 52.381 10.42 0.00 35.31 3.41
54 55 0.181114 GGCCTGCATGTGGAGATACA 59.819 55.000 10.42 0.00 35.31 2.29
83 84 3.443681 TGATTTCAGGAGAATTTTCGGGC 59.556 43.478 0.00 0.00 32.89 6.13
93 94 8.680903 GCTTATCTTTTTCATGATTTCAGGAGA 58.319 33.333 0.00 0.00 37.97 3.71
103 104 5.105917 GGTTTCGGGCTTATCTTTTTCATGA 60.106 40.000 0.00 0.00 0.00 3.07
110 111 2.891191 TGGGTTTCGGGCTTATCTTT 57.109 45.000 0.00 0.00 0.00 2.52
118 119 2.124277 AGATAGTTTGGGTTTCGGGC 57.876 50.000 0.00 0.00 0.00 6.13
128 129 7.656948 TCATTTTTCAGCCCAAAAGATAGTTTG 59.343 33.333 0.00 0.00 38.07 2.93
129 130 7.734942 TCATTTTTCAGCCCAAAAGATAGTTT 58.265 30.769 0.00 0.00 0.00 2.66
130 131 7.301868 TCATTTTTCAGCCCAAAAGATAGTT 57.698 32.000 0.00 0.00 0.00 2.24
131 132 6.071165 CCTCATTTTTCAGCCCAAAAGATAGT 60.071 38.462 0.00 0.00 0.00 2.12
132 133 6.335777 CCTCATTTTTCAGCCCAAAAGATAG 58.664 40.000 0.00 0.00 0.00 2.08
133 134 5.337491 GCCTCATTTTTCAGCCCAAAAGATA 60.337 40.000 0.00 0.00 0.00 1.98
134 135 4.564199 GCCTCATTTTTCAGCCCAAAAGAT 60.564 41.667 0.00 0.00 0.00 2.40
135 136 3.244181 GCCTCATTTTTCAGCCCAAAAGA 60.244 43.478 0.00 0.00 0.00 2.52
136 137 3.069289 GCCTCATTTTTCAGCCCAAAAG 58.931 45.455 0.00 0.00 0.00 2.27
137 138 2.224499 GGCCTCATTTTTCAGCCCAAAA 60.224 45.455 0.00 0.00 37.66 2.44
138 139 1.347378 GGCCTCATTTTTCAGCCCAAA 59.653 47.619 0.00 0.00 37.66 3.28
139 140 0.975887 GGCCTCATTTTTCAGCCCAA 59.024 50.000 0.00 0.00 37.66 4.12
140 141 2.669878 GGCCTCATTTTTCAGCCCA 58.330 52.632 0.00 0.00 37.66 5.36
142 143 0.965363 TCGGGCCTCATTTTTCAGCC 60.965 55.000 0.84 0.00 43.09 4.85
143 144 0.887933 TTCGGGCCTCATTTTTCAGC 59.112 50.000 0.84 0.00 0.00 4.26
147 148 1.265236 TGCATTCGGGCCTCATTTTT 58.735 45.000 0.84 0.00 0.00 1.94
157 158 2.749839 TCGGGCTTTGCATTCGGG 60.750 61.111 0.00 0.00 0.00 5.14
158 159 2.485122 GTCGGGCTTTGCATTCGG 59.515 61.111 0.00 0.00 0.00 4.30
159 160 2.485122 GGTCGGGCTTTGCATTCG 59.515 61.111 0.00 0.00 0.00 3.34
161 162 3.061848 CGGGTCGGGCTTTGCATT 61.062 61.111 0.00 0.00 0.00 3.56
208 209 1.360551 CTCGTGCGATAGACCTGGG 59.639 63.158 0.00 0.00 39.76 4.45
210 211 1.018148 AGACTCGTGCGATAGACCTG 58.982 55.000 0.00 0.00 39.76 4.00
211 212 2.616634 TAGACTCGTGCGATAGACCT 57.383 50.000 0.00 0.00 39.76 3.85
213 214 2.224549 AGCATAGACTCGTGCGATAGAC 59.775 50.000 7.00 0.00 45.69 2.59
214 215 2.480802 GAGCATAGACTCGTGCGATAGA 59.519 50.000 7.00 0.00 45.69 1.98
263 272 4.996758 CCACGTAGATTATGATGATGCCAA 59.003 41.667 0.00 0.00 0.00 4.52
270 279 8.833231 AATTTCCTACCACGTAGATTATGATG 57.167 34.615 0.32 0.00 38.29 3.07
328 342 1.752198 CAGTCCTGTCCCGTTGGAA 59.248 57.895 0.00 0.00 44.07 3.53
329 343 2.879233 GCAGTCCTGTCCCGTTGGA 61.879 63.158 0.00 0.00 38.75 3.53
370 386 0.749649 AATCTCTTCGCCGATCTGCT 59.250 50.000 7.56 0.00 0.00 4.24
371 387 1.135867 GAATCTCTTCGCCGATCTGC 58.864 55.000 0.00 0.00 0.00 4.26
372 388 1.067669 TGGAATCTCTTCGCCGATCTG 59.932 52.381 0.00 0.00 31.75 2.90
430 450 3.760151 ACTGGTTGAGCACACGTACTATA 59.240 43.478 0.00 0.00 0.00 1.31
638 684 2.602267 TGAAACGCGGGGAGAGGA 60.602 61.111 12.47 0.00 0.00 3.71
650 696 1.673329 GGGAAGAGAGCGACCTGAAAC 60.673 57.143 0.00 0.00 0.00 2.78
680 726 3.641454 GGGAGGGCGATGGGATCC 61.641 72.222 1.92 1.92 0.00 3.36
711 783 0.799534 GCGCGTACGTATGTGGAAGT 60.800 55.000 25.33 0.00 42.83 3.01
712 784 1.477030 GGCGCGTACGTATGTGGAAG 61.477 60.000 25.33 10.07 42.83 3.46
768 869 0.613292 GCCAGTGAGAGAGAGTGGGA 60.613 60.000 0.00 0.00 34.83 4.37
770 871 0.246086 GTGCCAGTGAGAGAGAGTGG 59.754 60.000 0.00 0.00 37.03 4.00
771 872 1.067706 CAGTGCCAGTGAGAGAGAGTG 60.068 57.143 0.00 0.00 0.00 3.51
772 873 1.255882 CAGTGCCAGTGAGAGAGAGT 58.744 55.000 0.00 0.00 0.00 3.24
773 874 0.531657 CCAGTGCCAGTGAGAGAGAG 59.468 60.000 0.00 0.00 0.00 3.20
774 875 1.539560 GCCAGTGCCAGTGAGAGAGA 61.540 60.000 0.00 0.00 0.00 3.10
775 876 1.079266 GCCAGTGCCAGTGAGAGAG 60.079 63.158 0.00 0.00 0.00 3.20
776 877 0.251787 TAGCCAGTGCCAGTGAGAGA 60.252 55.000 0.00 0.00 38.69 3.10
786 887 1.226831 GAGACGAGCTAGCCAGTGC 60.227 63.158 16.14 8.75 37.95 4.40
791 892 0.661020 GAGAGTGAGACGAGCTAGCC 59.339 60.000 12.13 1.79 0.00 3.93
810 911 1.620819 AGTTATAGGCATCAGCGAGGG 59.379 52.381 0.00 0.00 43.41 4.30
811 912 2.353208 GGAGTTATAGGCATCAGCGAGG 60.353 54.545 0.00 0.00 43.41 4.63
995 1099 1.561076 TGATGTACAGCCTCATTGCCT 59.439 47.619 8.95 0.00 0.00 4.75
996 1100 1.672881 GTGATGTACAGCCTCATTGCC 59.327 52.381 8.95 0.00 0.00 4.52
1215 1322 1.305887 ACCGACGAGGAAGGGGAAT 60.306 57.895 8.56 0.00 45.00 3.01
1218 1325 1.614241 AATCACCGACGAGGAAGGGG 61.614 60.000 8.56 0.00 45.00 4.79
1258 1366 0.180406 CACGGGAATGGGGGAGTAAG 59.820 60.000 0.00 0.00 0.00 2.34
1261 1369 2.204090 ACACGGGAATGGGGGAGT 60.204 61.111 0.00 0.00 0.00 3.85
1284 1392 2.922503 TCCGAGCAACCTGAGGCA 60.923 61.111 0.00 0.00 0.00 4.75
1389 1497 1.346722 GGCCTAACACACTACACTGGT 59.653 52.381 0.00 0.00 0.00 4.00
1390 1498 1.346395 TGGCCTAACACACTACACTGG 59.654 52.381 3.32 0.00 0.00 4.00
1392 1500 2.037251 CACTGGCCTAACACACTACACT 59.963 50.000 3.32 0.00 0.00 3.55
1393 1501 2.224209 ACACTGGCCTAACACACTACAC 60.224 50.000 3.32 0.00 0.00 2.90
1394 1502 2.036733 GACACTGGCCTAACACACTACA 59.963 50.000 3.32 0.00 0.00 2.74
1723 1844 1.086696 CAAAGTACAGTGCCCGGATG 58.913 55.000 0.73 0.00 0.00 3.51
1880 3987 3.632145 GGATTGGTCACACAACTCAACTT 59.368 43.478 0.00 0.00 32.39 2.66
1884 3991 3.072915 AGATGGATTGGTCACACAACTCA 59.927 43.478 0.00 0.00 32.39 3.41
1885 3992 3.679389 AGATGGATTGGTCACACAACTC 58.321 45.455 0.00 0.00 32.39 3.01
1886 3993 3.560025 GGAGATGGATTGGTCACACAACT 60.560 47.826 0.00 0.00 32.39 3.16
1887 3994 2.749621 GGAGATGGATTGGTCACACAAC 59.250 50.000 0.00 0.00 32.39 3.32
1889 3996 1.984424 TGGAGATGGATTGGTCACACA 59.016 47.619 0.00 0.00 0.00 3.72
1890 3997 2.787473 TGGAGATGGATTGGTCACAC 57.213 50.000 0.00 0.00 0.00 3.82
1891 3998 3.117745 AGATGGAGATGGATTGGTCACA 58.882 45.455 0.00 0.00 0.00 3.58
1892 3999 3.853355 AGATGGAGATGGATTGGTCAC 57.147 47.619 0.00 0.00 0.00 3.67
1893 4000 5.013495 GGATTAGATGGAGATGGATTGGTCA 59.987 44.000 0.00 0.00 0.00 4.02
1894 4001 5.013495 TGGATTAGATGGAGATGGATTGGTC 59.987 44.000 0.00 0.00 0.00 4.02
1895 4002 4.915809 TGGATTAGATGGAGATGGATTGGT 59.084 41.667 0.00 0.00 0.00 3.67
1896 4003 5.509832 TGGATTAGATGGAGATGGATTGG 57.490 43.478 0.00 0.00 0.00 3.16
1897 4004 6.540995 ACTTGGATTAGATGGAGATGGATTG 58.459 40.000 0.00 0.00 0.00 2.67
1898 4005 6.240118 GGACTTGGATTAGATGGAGATGGATT 60.240 42.308 0.00 0.00 0.00 3.01
1899 4006 5.250313 GGACTTGGATTAGATGGAGATGGAT 59.750 44.000 0.00 0.00 0.00 3.41
1900 4007 4.594920 GGACTTGGATTAGATGGAGATGGA 59.405 45.833 0.00 0.00 0.00 3.41
1901 4008 4.562347 CGGACTTGGATTAGATGGAGATGG 60.562 50.000 0.00 0.00 0.00 3.51
1902 4009 4.281941 TCGGACTTGGATTAGATGGAGATG 59.718 45.833 0.00 0.00 0.00 2.90
1903 4010 4.282195 GTCGGACTTGGATTAGATGGAGAT 59.718 45.833 0.00 0.00 0.00 2.75
1904 4011 3.637229 GTCGGACTTGGATTAGATGGAGA 59.363 47.826 0.00 0.00 0.00 3.71
1905 4012 3.243907 GGTCGGACTTGGATTAGATGGAG 60.244 52.174 8.23 0.00 0.00 3.86
1913 4020 0.974383 ACTTCGGTCGGACTTGGATT 59.026 50.000 8.23 0.00 0.00 3.01
1959 4066 4.887071 AGTATGAGCAAAAGTGTTTGACCA 59.113 37.500 3.44 1.03 45.99 4.02
1989 4106 3.047877 GAACACAGGCCCCGAACG 61.048 66.667 0.00 0.00 0.00 3.95
1995 4112 2.031870 ACTTTTGAAGAACACAGGCCC 58.968 47.619 0.00 0.00 0.00 5.80
1999 4116 3.629398 AGCTCCACTTTTGAAGAACACAG 59.371 43.478 0.00 0.00 0.00 3.66
2013 4130 1.174783 CACGTAGTACCAGCTCCACT 58.825 55.000 0.00 0.00 41.61 4.00
2024 4141 2.819019 TCCATGACCGTTTCACGTAGTA 59.181 45.455 0.00 0.00 41.61 1.82
2026 4143 2.357327 TCCATGACCGTTTCACGTAG 57.643 50.000 0.00 0.00 40.58 3.51
2041 4158 3.647590 ACCAGAAAAAGTTGCCAATCCAT 59.352 39.130 0.00 0.00 0.00 3.41
2049 4166 6.019075 GGTACAAATTGACCAGAAAAAGTTGC 60.019 38.462 0.00 0.00 33.45 4.17
2179 4306 2.362397 TCGCAACAAAATAAACCCAGCA 59.638 40.909 0.00 0.00 0.00 4.41
2215 4342 5.830000 AGAAAGTCACAAGGGTTTTGTAC 57.170 39.130 0.00 0.00 0.00 2.90
2355 4486 1.067516 GCAACTGCTTGGAAAAGAGCA 59.932 47.619 0.00 0.00 45.91 4.26
2433 4564 8.798859 AAAACAAAGATCTACTGTATGAGCAT 57.201 30.769 10.05 0.00 0.00 3.79
2434 4565 7.877612 TGAAAACAAAGATCTACTGTATGAGCA 59.122 33.333 10.05 3.95 0.00 4.26
2435 4566 8.256611 TGAAAACAAAGATCTACTGTATGAGC 57.743 34.615 10.05 0.00 0.00 4.26
2437 4568 8.668353 GCATGAAAACAAAGATCTACTGTATGA 58.332 33.333 15.82 4.86 0.00 2.15
2438 4569 7.637519 CGCATGAAAACAAAGATCTACTGTATG 59.362 37.037 10.05 10.58 0.00 2.39
2439 4570 7.677276 GCGCATGAAAACAAAGATCTACTGTAT 60.677 37.037 0.30 4.09 0.00 2.29
2440 4571 6.402118 GCGCATGAAAACAAAGATCTACTGTA 60.402 38.462 0.30 0.00 0.00 2.74
2441 4572 5.617751 GCGCATGAAAACAAAGATCTACTGT 60.618 40.000 0.30 0.00 0.00 3.55
2442 4573 4.790140 GCGCATGAAAACAAAGATCTACTG 59.210 41.667 0.30 0.00 0.00 2.74
2443 4574 4.455533 TGCGCATGAAAACAAAGATCTACT 59.544 37.500 5.66 0.00 0.00 2.57
2444 4575 4.722194 TGCGCATGAAAACAAAGATCTAC 58.278 39.130 5.66 0.00 0.00 2.59
2461 4592 0.518195 CATCATGTGTGTTCTGCGCA 59.482 50.000 10.98 10.98 34.86 6.09
2539 4674 8.884124 TTCCACTCTTTCATAAATTCCTGATT 57.116 30.769 0.00 0.00 0.00 2.57
2580 4715 1.923909 GGGGTCCAACAGGGTAGCT 60.924 63.158 0.00 0.00 38.11 3.32
2619 4754 3.070734 CCATGAGATCGTCCAAGGAATCT 59.929 47.826 3.52 3.52 0.00 2.40
2688 4823 0.035820 TTATCTTGACCACCACGGCC 60.036 55.000 0.00 0.00 39.03 6.13
2697 4832 2.949447 ACCATGGCCATTATCTTGACC 58.051 47.619 17.92 0.00 0.00 4.02
2700 4835 3.476552 ACGTACCATGGCCATTATCTTG 58.523 45.455 17.92 4.92 0.00 3.02
2877 5016 1.376466 CAGGGGACAACACAGGGAG 59.624 63.158 0.00 0.00 0.00 4.30
2910 5049 3.118811 GCACCAGATCATATCTCTAGGCC 60.119 52.174 0.00 0.00 37.58 5.19
2929 5068 1.814394 TGACCATGCAGATGAAAGCAC 59.186 47.619 0.00 0.00 44.49 4.40
2954 5093 1.084370 CAAATCGAGGCGAGTGTCCC 61.084 60.000 0.00 0.00 39.91 4.46
2959 5098 1.798813 GTTTGACAAATCGAGGCGAGT 59.201 47.619 3.49 0.00 39.91 4.18
2962 5101 2.508867 CATGTTTGACAAATCGAGGCG 58.491 47.619 3.49 0.00 0.00 5.52
2963 5102 2.253603 GCATGTTTGACAAATCGAGGC 58.746 47.619 3.49 1.66 0.00 4.70
3021 5164 1.664016 GCAGCTGGTTCAAATCACACG 60.664 52.381 17.12 0.00 0.00 4.49
3310 5463 2.974489 GAACACGAGCCTCGACGGA 61.974 63.158 22.80 0.00 43.74 4.69
3646 5805 0.462047 ACCATTTCTCCCATCGACGC 60.462 55.000 0.00 0.00 0.00 5.19
3656 5815 5.048083 TGCCAATTGTTACTCACCATTTCTC 60.048 40.000 4.43 0.00 0.00 2.87
3657 5816 4.832266 TGCCAATTGTTACTCACCATTTCT 59.168 37.500 4.43 0.00 0.00 2.52
3790 5949 0.541392 CCATGATGTTCCCGTCCAGA 59.459 55.000 0.00 0.00 0.00 3.86
3838 5997 1.153289 GATGCAGATGCCACCGTCT 60.153 57.895 1.72 0.00 41.18 4.18
3926 6085 1.525995 CCCAAGACCACGTGCAGTT 60.526 57.895 10.91 0.00 0.00 3.16
3988 6147 1.022735 ATAGCTGGTACGTCTCGGTG 58.977 55.000 0.00 0.00 0.00 4.94
4032 6191 3.244911 GGAAAATGGTGAGAGTTCAGGGA 60.245 47.826 0.00 0.00 32.98 4.20
4054 6213 2.492019 TGATTGCTCGATCGTGGTAG 57.508 50.000 15.94 6.07 0.00 3.18
4189 6355 1.063649 GCCGTCGAACGCTATCAGA 59.936 57.895 0.00 0.00 40.91 3.27
4653 6821 4.022849 GCTACAACTTCTGCAATTTCCACT 60.023 41.667 0.00 0.00 0.00 4.00
4654 6822 4.229876 GCTACAACTTCTGCAATTTCCAC 58.770 43.478 0.00 0.00 0.00 4.02
4753 6921 4.151883 ACGGACAAGTTAAGGTACCAGTA 58.848 43.478 15.94 2.68 0.00 2.74
4756 6924 4.558496 CGTAACGGACAAGTTAAGGTACCA 60.558 45.833 15.94 0.00 38.19 3.25
4897 7088 1.639635 ATCCACTGACATCTGGGCCC 61.640 60.000 17.59 17.59 0.00 5.80
4904 7095 2.391616 TGCTCACATCCACTGACATC 57.608 50.000 0.00 0.00 0.00 3.06
4927 7118 1.550524 AGAACATTCACCTAGCGCAGA 59.449 47.619 11.47 0.00 0.00 4.26
4935 7126 5.596836 TTCTGCAAAAAGAACATTCACCT 57.403 34.783 0.00 0.00 31.19 4.00
4955 7160 6.819947 TCTAATTAGACCTTAGGGGGTTTC 57.180 41.667 11.24 0.00 40.06 2.78
4970 7175 5.700832 TGGCTTAATCGTGGCATCTAATTAG 59.299 40.000 6.11 6.11 33.80 1.73
4977 7182 3.316308 AGAAATGGCTTAATCGTGGCATC 59.684 43.478 0.00 0.00 46.42 3.91
4981 7186 5.760253 ACATAGAGAAATGGCTTAATCGTGG 59.240 40.000 0.00 0.00 0.00 4.94
4987 7192 9.845740 TTATTAGCACATAGAGAAATGGCTTAA 57.154 29.630 0.00 0.00 35.95 1.85
4994 7199 9.905713 TTTCCTGTTATTAGCACATAGAGAAAT 57.094 29.630 0.00 0.00 0.00 2.17
5122 7338 7.664731 CGAGAGGTAGACTATATAGGTTTCCAA 59.335 40.741 14.25 0.00 0.00 3.53
5319 7555 7.763985 ACCTTGAAGTGTTTAAATCCACAAAAG 59.236 33.333 10.53 9.75 33.99 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.