Multiple sequence alignment - TraesCS3D01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G283200 chr3D 100.000 9524 0 0 1 9524 391587503 391597026 0.000000e+00 17588.0
1 TraesCS3D01G283200 chr3D 87.567 563 65 5 6285 6846 391593541 391594099 0.000000e+00 647.0
2 TraesCS3D01G283200 chr3D 87.567 563 65 5 6039 6597 391593787 391594348 0.000000e+00 647.0
3 TraesCS3D01G283200 chr3D 85.586 333 45 1 6102 6434 391593211 391593540 7.080000e-91 346.0
4 TraesCS3D01G283200 chr3D 85.586 333 45 1 5709 6038 391593604 391593936 7.080000e-91 346.0
5 TraesCS3D01G283200 chr3D 96.599 147 5 0 6039 6185 391593394 391593540 2.660000e-60 244.0
6 TraesCS3D01G283200 chr3D 96.599 147 5 0 5892 6038 391593541 391593687 2.660000e-60 244.0
7 TraesCS3D01G283200 chr3D 94.839 155 7 1 1 154 185001024 185001178 3.440000e-59 241.0
8 TraesCS3D01G283200 chr3A 97.301 5113 105 7 3789 8889 511746615 511751706 0.000000e+00 8647.0
9 TraesCS3D01G283200 chr3A 94.559 1801 48 20 658 2435 511743416 511745189 0.000000e+00 2737.0
10 TraesCS3D01G283200 chr3A 97.485 1312 31 2 2432 3742 511745302 511746612 0.000000e+00 2239.0
11 TraesCS3D01G283200 chr3A 88.906 640 41 8 8893 9524 511751750 511752367 0.000000e+00 761.0
12 TraesCS3D01G283200 chr3A 87.922 563 63 5 6285 6846 511748846 511749404 0.000000e+00 658.0
13 TraesCS3D01G283200 chr3A 87.922 563 63 5 6039 6597 511749092 511749653 0.000000e+00 658.0
14 TraesCS3D01G283200 chr3A 85.886 333 44 1 6102 6434 511748516 511748845 1.520000e-92 351.0
15 TraesCS3D01G283200 chr3A 85.886 333 44 1 5709 6038 511748909 511749241 1.520000e-92 351.0
16 TraesCS3D01G283200 chr3A 96.599 147 5 0 5892 6038 511748846 511748992 2.660000e-60 244.0
17 TraesCS3D01G283200 chr3B 97.293 4803 112 3 3789 8582 508701796 508706589 0.000000e+00 8133.0
18 TraesCS3D01G283200 chr3B 95.836 2858 73 19 909 3742 508698958 508701793 0.000000e+00 4577.0
19 TraesCS3D01G283200 chr3B 88.277 563 61 5 6039 6597 508704286 508704847 0.000000e+00 669.0
20 TraesCS3D01G283200 chr3B 87.211 563 67 5 6285 6846 508704040 508704598 3.750000e-178 636.0
21 TraesCS3D01G283200 chr3B 96.000 375 15 0 9150 9524 508707084 508707458 2.270000e-170 610.0
22 TraesCS3D01G283200 chr3B 85.246 488 44 13 165 649 508697940 508698402 2.410000e-130 477.0
23 TraesCS3D01G283200 chr3B 86.755 453 30 5 8631 9053 508706590 508707042 2.410000e-130 477.0
24 TraesCS3D01G283200 chr3B 91.971 274 10 4 636 907 508698424 508698687 3.250000e-99 374.0
25 TraesCS3D01G283200 chr3B 86.486 333 42 1 6102 6434 508703710 508704039 7.030000e-96 363.0
26 TraesCS3D01G283200 chr3B 94.558 147 8 0 5892 6038 508704040 508704186 2.680000e-55 228.0
27 TraesCS3D01G283200 chr3B 82.051 78 7 5 122 198 738577811 738577882 1.030000e-04 60.2
28 TraesCS3D01G283200 chr7D 95.513 156 6 1 1 155 594278976 594279131 2.050000e-61 248.0
29 TraesCS3D01G283200 chr7D 95.455 154 6 1 1 153 273768842 273768689 2.660000e-60 244.0
30 TraesCS3D01G283200 chr7D 95.455 154 6 1 1 153 297837266 297837419 2.660000e-60 244.0
31 TraesCS3D01G283200 chr4D 95.455 154 6 1 1 153 414022610 414022457 2.660000e-60 244.0
32 TraesCS3D01G283200 chr4D 92.727 165 11 1 1 164 9157499 9157663 4.450000e-58 237.0
33 TraesCS3D01G283200 chr6D 94.839 155 7 1 1 154 327588471 327588625 3.440000e-59 241.0
34 TraesCS3D01G283200 chr6D 94.805 154 7 1 1 153 404566016 404566169 1.240000e-58 239.0
35 TraesCS3D01G283200 chr7A 92.121 165 11 2 1 163 492750843 492750679 2.070000e-56 231.0
36 TraesCS3D01G283200 chr1D 86.667 60 5 3 126 184 247262510 247262567 7.980000e-06 63.9
37 TraesCS3D01G283200 chr5D 100.000 31 0 0 515 545 238225412 238225382 3.710000e-04 58.4
38 TraesCS3D01G283200 chr4A 83.333 66 7 3 122 186 418339723 418339661 3.710000e-04 58.4
39 TraesCS3D01G283200 chr2D 80.723 83 6 9 122 198 523007490 523007568 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G283200 chr3D 391587503 391597026 9523 False 2866.000000 17588 91.357714 1 9524 7 chr3D.!!$F2 9523
1 TraesCS3D01G283200 chr3A 511743416 511752367 8951 False 1849.555556 8647 91.385111 658 9524 9 chr3A.!!$F1 8866
2 TraesCS3D01G283200 chr3B 508697940 508707458 9518 False 1654.400000 8133 90.963300 165 9524 10 chr3B.!!$F2 9359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.106335 TCCGGGTTAGTTTCGTGCAA 59.894 50.000 0.00 0.00 0.00 4.08 F
1419 1748 0.242555 GAGAGCGCTCCAGTATAGCC 59.757 60.000 32.94 5.48 36.60 3.93 F
2102 2433 0.396811 AACACGAGGAACAAGGGAGG 59.603 55.000 0.00 0.00 0.00 4.30 F
3744 4196 0.322366 TGGCGCAGATGACATTGGAA 60.322 50.000 10.83 0.00 0.00 3.53 F
3757 4209 0.041090 ATTGGAAGTTGGGGGCGAAT 59.959 50.000 0.00 0.00 0.00 3.34 F
4046 4498 0.468226 GACCAACGAGGGATATGGCA 59.532 55.000 4.18 0.00 43.89 4.92 F
4102 4554 1.214305 ATTCTAGGGCCTTGGCACCA 61.214 55.000 13.45 0.00 0.00 4.17 F
5895 6348 0.036306 AAAGGCCTGGTACCAGTTCG 59.964 55.000 34.49 22.90 42.15 3.95 F
6302 6755 1.741770 GTTCAGCGGCCGTGAGAAT 60.742 57.895 28.70 3.00 0.00 2.40 F
7803 8265 0.764369 TGGAGTTGTCTCAGCCACCT 60.764 55.000 0.00 0.00 42.05 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1807 0.040603 ACGGCTACTAGCGCGAATAC 60.041 55.000 12.10 0.00 43.62 1.89 R
3123 3575 0.114954 ACCCACACATCAATGCCCTT 59.885 50.000 0.00 0.00 0.00 3.95 R
3752 4204 0.753262 TTAGAGGAGCCCAGATTCGC 59.247 55.000 0.00 0.00 0.00 4.70 R
4555 5008 2.105821 CAGGAACTAGTGGGTTTGGTCA 59.894 50.000 0.00 0.00 36.02 4.02 R
4734 5187 2.629617 CCACAGGGCAGTCAAAATTTCT 59.370 45.455 0.00 0.00 0.00 2.52 R
5895 6348 2.358737 CTGGTTCTCACGGCCACC 60.359 66.667 2.24 1.31 0.00 4.61 R
6118 6571 3.942115 GGAAGACTAGTTTTCTCCATGGC 59.058 47.826 21.62 3.97 0.00 4.40 R
6998 7460 0.111253 ACAAGGAACAGAAGCAGGGG 59.889 55.000 0.00 0.00 0.00 4.79 R
7995 8457 1.505425 GTTGGTGGGTACGAACAGAC 58.495 55.000 0.00 0.00 42.79 3.51 R
8984 9501 0.721718 GAGTATGTGTTGCGCCAGAC 59.278 55.000 4.18 2.58 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.787260 AAAAACAACACCACGGTAGTTT 57.213 36.364 7.43 7.43 32.34 2.66
37 38 4.787260 AAAACAACACCACGGTAGTTTT 57.213 36.364 15.15 15.15 34.78 2.43
38 39 3.768468 AACAACACCACGGTAGTTTTG 57.232 42.857 4.43 4.43 0.00 2.44
39 40 1.402613 ACAACACCACGGTAGTTTTGC 59.597 47.619 5.67 0.00 0.00 3.68
40 41 1.673920 CAACACCACGGTAGTTTTGCT 59.326 47.619 0.00 0.00 0.00 3.91
41 42 1.305201 ACACCACGGTAGTTTTGCTG 58.695 50.000 0.00 0.00 0.00 4.41
42 43 1.134340 ACACCACGGTAGTTTTGCTGA 60.134 47.619 0.00 0.00 0.00 4.26
43 44 1.944024 CACCACGGTAGTTTTGCTGAA 59.056 47.619 0.00 0.00 0.00 3.02
44 45 2.356382 CACCACGGTAGTTTTGCTGAAA 59.644 45.455 0.00 0.00 0.00 2.69
45 46 3.018149 ACCACGGTAGTTTTGCTGAAAA 58.982 40.909 0.00 0.00 0.00 2.29
56 57 3.736581 GCTGAAAACAGCGTCAGTC 57.263 52.632 6.46 0.00 42.72 3.51
57 58 0.235926 GCTGAAAACAGCGTCAGTCC 59.764 55.000 6.46 0.00 42.72 3.85
58 59 0.508641 CTGAAAACAGCGTCAGTCCG 59.491 55.000 0.00 0.00 37.16 4.79
59 60 0.878523 TGAAAACAGCGTCAGTCCGG 60.879 55.000 0.00 0.00 0.00 5.14
60 61 1.566018 GAAAACAGCGTCAGTCCGGG 61.566 60.000 0.00 0.00 0.00 5.73
61 62 2.319890 AAAACAGCGTCAGTCCGGGT 62.320 55.000 0.00 0.00 0.00 5.28
62 63 2.319890 AAACAGCGTCAGTCCGGGTT 62.320 55.000 0.00 0.00 0.00 4.11
63 64 1.466025 AACAGCGTCAGTCCGGGTTA 61.466 55.000 0.00 0.00 0.00 2.85
64 65 1.153823 CAGCGTCAGTCCGGGTTAG 60.154 63.158 0.00 0.00 0.00 2.34
65 66 1.605738 AGCGTCAGTCCGGGTTAGT 60.606 57.895 0.00 0.00 0.00 2.24
66 67 1.183676 AGCGTCAGTCCGGGTTAGTT 61.184 55.000 0.00 0.00 0.00 2.24
67 68 0.320160 GCGTCAGTCCGGGTTAGTTT 60.320 55.000 0.00 0.00 0.00 2.66
68 69 1.706443 CGTCAGTCCGGGTTAGTTTC 58.294 55.000 0.00 0.00 0.00 2.78
69 70 1.706443 GTCAGTCCGGGTTAGTTTCG 58.294 55.000 0.00 0.00 0.00 3.46
70 71 1.000171 GTCAGTCCGGGTTAGTTTCGT 60.000 52.381 0.00 0.00 0.00 3.85
71 72 1.000060 TCAGTCCGGGTTAGTTTCGTG 60.000 52.381 0.00 0.00 0.00 4.35
72 73 0.320160 AGTCCGGGTTAGTTTCGTGC 60.320 55.000 0.00 0.00 0.00 5.34
73 74 0.600782 GTCCGGGTTAGTTTCGTGCA 60.601 55.000 0.00 0.00 0.00 4.57
74 75 0.106335 TCCGGGTTAGTTTCGTGCAA 59.894 50.000 0.00 0.00 0.00 4.08
75 76 0.945813 CCGGGTTAGTTTCGTGCAAA 59.054 50.000 0.00 0.00 0.00 3.68
76 77 1.538075 CCGGGTTAGTTTCGTGCAAAT 59.462 47.619 0.00 0.00 0.00 2.32
77 78 2.413634 CCGGGTTAGTTTCGTGCAAATC 60.414 50.000 0.00 0.00 0.00 2.17
78 79 2.224549 CGGGTTAGTTTCGTGCAAATCA 59.775 45.455 0.00 0.00 0.00 2.57
79 80 3.119990 CGGGTTAGTTTCGTGCAAATCAT 60.120 43.478 0.00 0.00 0.00 2.45
80 81 4.093703 CGGGTTAGTTTCGTGCAAATCATA 59.906 41.667 0.00 0.00 0.00 2.15
81 82 5.329493 GGGTTAGTTTCGTGCAAATCATAC 58.671 41.667 0.00 0.00 0.00 2.39
82 83 5.329493 GGTTAGTTTCGTGCAAATCATACC 58.671 41.667 0.00 0.00 0.00 2.73
83 84 5.106475 GGTTAGTTTCGTGCAAATCATACCA 60.106 40.000 0.00 0.00 0.00 3.25
84 85 6.375377 GTTAGTTTCGTGCAAATCATACCAA 58.625 36.000 0.00 0.00 0.00 3.67
85 86 5.446143 AGTTTCGTGCAAATCATACCAAA 57.554 34.783 0.00 0.00 0.00 3.28
86 87 5.837437 AGTTTCGTGCAAATCATACCAAAA 58.163 33.333 0.00 0.00 0.00 2.44
87 88 5.689961 AGTTTCGTGCAAATCATACCAAAAC 59.310 36.000 0.00 0.00 0.00 2.43
88 89 4.167554 TCGTGCAAATCATACCAAAACC 57.832 40.909 0.00 0.00 0.00 3.27
89 90 3.570125 TCGTGCAAATCATACCAAAACCA 59.430 39.130 0.00 0.00 0.00 3.67
90 91 4.219507 TCGTGCAAATCATACCAAAACCAT 59.780 37.500 0.00 0.00 0.00 3.55
91 92 5.416013 TCGTGCAAATCATACCAAAACCATA 59.584 36.000 0.00 0.00 0.00 2.74
92 93 6.096141 TCGTGCAAATCATACCAAAACCATAT 59.904 34.615 0.00 0.00 0.00 1.78
93 94 7.283354 TCGTGCAAATCATACCAAAACCATATA 59.717 33.333 0.00 0.00 0.00 0.86
94 95 7.591057 CGTGCAAATCATACCAAAACCATATAG 59.409 37.037 0.00 0.00 0.00 1.31
95 96 8.629158 GTGCAAATCATACCAAAACCATATAGA 58.371 33.333 0.00 0.00 0.00 1.98
96 97 9.194972 TGCAAATCATACCAAAACCATATAGAA 57.805 29.630 0.00 0.00 0.00 2.10
112 113 9.679661 ACCATATAGAATTGTTGTAACATGACA 57.320 29.630 0.00 0.00 38.95 3.58
123 124 8.614469 TGTTGTAACATGACATGAATACTTCA 57.386 30.769 22.19 18.94 37.82 3.02
124 125 9.230122 TGTTGTAACATGACATGAATACTTCAT 57.770 29.630 22.19 0.00 41.52 2.57
156 157 1.636988 CGTTGGAGACGTATCAACCC 58.363 55.000 12.92 0.00 46.49 4.11
157 158 1.203994 CGTTGGAGACGTATCAACCCT 59.796 52.381 12.92 0.00 46.49 4.34
158 159 2.734492 CGTTGGAGACGTATCAACCCTC 60.734 54.545 12.92 0.92 46.49 4.30
159 160 2.496470 GTTGGAGACGTATCAACCCTCT 59.504 50.000 12.92 0.00 35.92 3.69
160 161 2.100197 TGGAGACGTATCAACCCTCTG 58.900 52.381 12.92 0.00 0.00 3.35
161 162 2.100989 GGAGACGTATCAACCCTCTGT 58.899 52.381 12.92 0.00 0.00 3.41
162 163 2.099427 GGAGACGTATCAACCCTCTGTC 59.901 54.545 12.92 0.00 0.00 3.51
163 164 2.753452 GAGACGTATCAACCCTCTGTCA 59.247 50.000 5.07 0.00 0.00 3.58
243 245 2.105528 CAGCCAATTGCCGCATCC 59.894 61.111 9.02 0.00 42.71 3.51
244 246 3.520862 AGCCAATTGCCGCATCCG 61.521 61.111 9.02 0.00 42.71 4.18
254 256 2.511600 CGCATCCGGAACTCCCAC 60.512 66.667 9.01 0.00 34.14 4.61
276 278 4.760047 CGTTGCCCCGTGCTAGCT 62.760 66.667 17.23 0.00 42.00 3.32
325 327 2.468532 GCCGTTTAGCGTCACACG 59.531 61.111 0.00 0.00 45.88 4.49
331 333 1.189446 GTTTAGCGTCACACGTGTCAG 59.811 52.381 20.49 13.84 44.73 3.51
344 346 3.127533 GTCAGTGACATGCGGGGC 61.128 66.667 18.54 0.00 32.09 5.80
346 348 4.415150 CAGTGACATGCGGGGCCT 62.415 66.667 0.84 0.00 0.00 5.19
347 349 2.687200 AGTGACATGCGGGGCCTA 60.687 61.111 0.84 0.00 0.00 3.93
348 350 2.513897 GTGACATGCGGGGCCTAC 60.514 66.667 0.84 0.00 0.00 3.18
349 351 4.155733 TGACATGCGGGGCCTACG 62.156 66.667 14.66 14.66 0.00 3.51
364 366 4.950434 GCCTACGCCATTGTAACTAAAA 57.050 40.909 0.00 0.00 0.00 1.52
365 367 5.299582 GCCTACGCCATTGTAACTAAAAA 57.700 39.130 0.00 0.00 0.00 1.94
443 447 7.290813 AGAGGTTTACAGGAAATGAGAAAAGT 58.709 34.615 0.00 0.00 0.00 2.66
444 448 7.780271 AGAGGTTTACAGGAAATGAGAAAAGTT 59.220 33.333 0.00 0.00 0.00 2.66
449 453 6.530019 ACAGGAAATGAGAAAAGTTGTTGT 57.470 33.333 0.00 0.00 0.00 3.32
453 457 5.460091 GGAAATGAGAAAAGTTGTTGTCTGC 59.540 40.000 0.00 0.00 29.49 4.26
480 484 8.814235 CAACTTCTCGTAAATTATACGGTCAAT 58.186 33.333 15.37 0.00 40.90 2.57
590 595 7.639113 AATTATTTTCCGAGGTGCAAGATTA 57.361 32.000 0.00 0.00 0.00 1.75
607 612 7.986320 TGCAAGATTATTATTCCACCCAAATTG 59.014 33.333 0.00 0.00 0.00 2.32
643 683 3.754323 ACATTCCAGCCAAATTTTGCATG 59.246 39.130 15.83 12.23 0.00 4.06
656 696 0.325933 TTGCATGGGGTCAGAGTCAG 59.674 55.000 0.00 0.00 0.00 3.51
763 805 0.389817 GAGTGTACAGCGCACCATGA 60.390 55.000 11.47 0.00 37.56 3.07
775 817 2.009042 GCACCATGACGGGAAGAAGAG 61.009 57.143 0.00 0.00 40.22 2.85
776 818 1.550524 CACCATGACGGGAAGAAGAGA 59.449 52.381 0.00 0.00 40.22 3.10
929 1241 2.660064 TTCCGCCTTCTCTCCCAGC 61.660 63.158 0.00 0.00 0.00 4.85
1055 1384 2.089980 GTACCCTACTCTCGTCTTGCA 58.910 52.381 0.00 0.00 0.00 4.08
1316 1645 4.309950 GACTTCGCCGTGGGTGGT 62.310 66.667 0.00 0.00 33.43 4.16
1419 1748 0.242555 GAGAGCGCTCCAGTATAGCC 59.757 60.000 32.94 5.48 36.60 3.93
1425 1754 2.864489 GCGCTCCAGTATAGCCTCTTTC 60.864 54.545 0.00 0.00 36.60 2.62
1442 1773 1.508632 TTCTGAAGCACAAGGTACGC 58.491 50.000 0.00 0.00 0.00 4.42
1469 1800 2.048877 CCGCTTTGCTTGCCCTTG 60.049 61.111 0.00 0.00 0.00 3.61
1473 1804 3.240770 TTTGCTTGCCCTTGCCCC 61.241 61.111 0.00 0.00 36.33 5.80
1477 1808 4.351054 CTTGCCCTTGCCCCGAGT 62.351 66.667 0.00 0.00 36.33 4.18
1478 1809 2.931105 TTGCCCTTGCCCCGAGTA 60.931 61.111 0.00 0.00 36.33 2.59
1480 1811 1.858739 TTGCCCTTGCCCCGAGTATT 61.859 55.000 0.00 0.00 36.33 1.89
1481 1812 1.526225 GCCCTTGCCCCGAGTATTC 60.526 63.158 0.00 0.00 0.00 1.75
1482 1813 1.227556 CCCTTGCCCCGAGTATTCG 60.228 63.158 0.00 0.00 46.29 3.34
1489 1820 1.653115 CCCGAGTATTCGCGCTAGT 59.347 57.895 5.56 0.00 45.38 2.57
1558 1889 2.158310 AGCTTTTAGGAAGGCCCTTGTT 60.158 45.455 0.00 0.00 44.85 2.83
1708 2039 4.219115 TGTTTTAGCCATTTGAAGGTGGA 58.781 39.130 3.28 0.00 37.72 4.02
1709 2040 4.280677 TGTTTTAGCCATTTGAAGGTGGAG 59.719 41.667 3.28 0.00 37.72 3.86
1710 2041 3.806949 TTAGCCATTTGAAGGTGGAGT 57.193 42.857 3.28 0.00 37.72 3.85
1711 2042 1.915141 AGCCATTTGAAGGTGGAGTG 58.085 50.000 3.28 0.00 37.72 3.51
1712 2043 0.890683 GCCATTTGAAGGTGGAGTGG 59.109 55.000 3.28 0.00 37.72 4.00
1713 2044 1.823250 GCCATTTGAAGGTGGAGTGGT 60.823 52.381 3.28 0.00 37.72 4.16
1714 2045 1.888512 CCATTTGAAGGTGGAGTGGTG 59.111 52.381 0.00 0.00 37.72 4.17
1715 2046 1.888512 CATTTGAAGGTGGAGTGGTGG 59.111 52.381 0.00 0.00 0.00 4.61
1822 2153 3.015145 CCTCCCCGGATGGTGGTT 61.015 66.667 0.73 0.00 34.89 3.67
1971 2302 1.888436 GACATCAGGACCTGTCGCCA 61.888 60.000 21.06 1.55 33.14 5.69
2030 2361 3.776781 CGGCCGGGGTGATACACA 61.777 66.667 20.10 0.00 35.86 3.72
2094 2425 2.972625 TCATGGATGAACACGAGGAAC 58.027 47.619 0.00 0.00 33.08 3.62
2100 2431 1.124780 TGAACACGAGGAACAAGGGA 58.875 50.000 0.00 0.00 0.00 4.20
2101 2432 1.070134 TGAACACGAGGAACAAGGGAG 59.930 52.381 0.00 0.00 0.00 4.30
2102 2433 0.396811 AACACGAGGAACAAGGGAGG 59.603 55.000 0.00 0.00 0.00 4.30
2103 2434 0.471211 ACACGAGGAACAAGGGAGGA 60.471 55.000 0.00 0.00 0.00 3.71
2104 2435 0.685097 CACGAGGAACAAGGGAGGAA 59.315 55.000 0.00 0.00 0.00 3.36
2105 2436 1.279271 CACGAGGAACAAGGGAGGAAT 59.721 52.381 0.00 0.00 0.00 3.01
2177 2508 3.370978 ACTCAAATCGTAAGGTCAATGCG 59.629 43.478 0.00 0.00 38.47 4.73
2398 2732 1.588583 TGATCCCCTTGGGGTAGGTAT 59.411 52.381 23.01 9.83 44.51 2.73
2422 2756 1.613836 AGCAAAGCTCTCCCAAGTTG 58.386 50.000 0.00 0.00 30.62 3.16
2425 2759 2.101415 GCAAAGCTCTCCCAAGTTGTTT 59.899 45.455 1.45 0.00 0.00 2.83
2515 2966 1.152819 AGGAGATACACGGGCGCTA 60.153 57.895 7.64 0.00 0.00 4.26
2685 3136 4.566987 GTTCGGAGAAATGACTGGTAGTT 58.433 43.478 0.00 0.00 45.90 2.24
2727 3178 6.183360 GGAAATATACGGTTTTTGGTTTTCGC 60.183 38.462 0.00 0.00 0.00 4.70
2735 3186 0.824182 TTTGGTTTTCGCCCGGTGAT 60.824 50.000 0.35 0.00 0.00 3.06
2838 3290 1.349688 TGCACCACGAATACTTCCCTT 59.650 47.619 0.00 0.00 0.00 3.95
3063 3515 2.203480 GTCAACCTGGCCTTGGCA 60.203 61.111 14.04 0.40 36.47 4.92
3123 3575 4.082523 GTGGCGCTAGTCCCTGCA 62.083 66.667 7.64 0.00 0.00 4.41
3155 3607 2.874245 TGGGTCCTCTCCTCCCCA 60.874 66.667 0.00 0.00 44.84 4.96
3157 3609 2.365768 GGTCCTCTCCTCCCCACC 60.366 72.222 0.00 0.00 0.00 4.61
3173 3625 2.421314 CCGCCATCGCCTATGTCA 59.579 61.111 0.00 0.00 33.34 3.58
3241 3693 0.888619 TCGTCTCTTGAGCCGAACAT 59.111 50.000 1.17 0.00 0.00 2.71
3245 3697 3.585862 GTCTCTTGAGCCGAACATAACA 58.414 45.455 0.00 0.00 0.00 2.41
3281 3733 3.447025 GATCCCTGGGACTTCGGCG 62.447 68.421 19.82 0.00 32.98 6.46
3340 3792 2.509166 TGGTGTGTGGTGGTTGTTTA 57.491 45.000 0.00 0.00 0.00 2.01
3349 3801 1.602323 TGGTTGTTTAGGCTGGCCG 60.602 57.895 5.93 0.00 41.95 6.13
3447 3899 1.078426 GCGTATGGTGGCCTCTGTT 60.078 57.895 3.32 0.00 0.00 3.16
3652 4104 0.755686 GGTGTCATCTAGGAGCCCAG 59.244 60.000 0.00 0.00 0.00 4.45
3685 4137 1.688311 CCCTCGTGATCTGGTTCCCTA 60.688 57.143 0.00 0.00 0.00 3.53
3714 4166 2.769893 ACATGATTTGGCTTGCCAAAC 58.230 42.857 33.42 26.54 41.56 2.93
3742 4194 1.430632 GTGGCGCAGATGACATTGG 59.569 57.895 10.83 0.00 0.00 3.16
3743 4195 1.026182 GTGGCGCAGATGACATTGGA 61.026 55.000 10.83 0.00 0.00 3.53
3744 4196 0.322366 TGGCGCAGATGACATTGGAA 60.322 50.000 10.83 0.00 0.00 3.53
3745 4197 0.379669 GGCGCAGATGACATTGGAAG 59.620 55.000 10.83 0.00 0.00 3.46
3746 4198 1.089920 GCGCAGATGACATTGGAAGT 58.910 50.000 0.30 0.00 0.00 3.01
3747 4199 1.470098 GCGCAGATGACATTGGAAGTT 59.530 47.619 0.30 0.00 0.00 2.66
3748 4200 2.730090 GCGCAGATGACATTGGAAGTTG 60.730 50.000 0.30 0.00 0.00 3.16
3749 4201 2.159476 CGCAGATGACATTGGAAGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
3750 4202 2.165030 GCAGATGACATTGGAAGTTGGG 59.835 50.000 0.00 0.00 0.00 4.12
3751 4203 2.756760 CAGATGACATTGGAAGTTGGGG 59.243 50.000 0.00 0.00 0.00 4.96
3752 4204 2.102578 GATGACATTGGAAGTTGGGGG 58.897 52.381 0.00 0.00 0.00 5.40
3753 4205 0.541764 TGACATTGGAAGTTGGGGGC 60.542 55.000 0.00 0.00 0.00 5.80
3754 4206 1.595093 GACATTGGAAGTTGGGGGCG 61.595 60.000 0.00 0.00 0.00 6.13
3755 4207 1.304052 CATTGGAAGTTGGGGGCGA 60.304 57.895 0.00 0.00 0.00 5.54
3756 4208 0.897863 CATTGGAAGTTGGGGGCGAA 60.898 55.000 0.00 0.00 0.00 4.70
3757 4209 0.041090 ATTGGAAGTTGGGGGCGAAT 59.959 50.000 0.00 0.00 0.00 3.34
3758 4210 0.610785 TTGGAAGTTGGGGGCGAATC 60.611 55.000 0.00 0.00 0.00 2.52
3759 4211 1.303282 GGAAGTTGGGGGCGAATCT 59.697 57.895 0.00 0.00 0.00 2.40
3760 4212 1.032114 GGAAGTTGGGGGCGAATCTG 61.032 60.000 0.00 0.00 0.00 2.90
3761 4213 1.000896 AAGTTGGGGGCGAATCTGG 60.001 57.895 0.00 0.00 0.00 3.86
3762 4214 2.440247 GTTGGGGGCGAATCTGGG 60.440 66.667 0.00 0.00 0.00 4.45
3763 4215 4.440829 TTGGGGGCGAATCTGGGC 62.441 66.667 0.00 0.00 0.00 5.36
3765 4217 4.570874 GGGGGCGAATCTGGGCTC 62.571 72.222 0.00 0.00 0.00 4.70
3766 4218 4.570874 GGGGCGAATCTGGGCTCC 62.571 72.222 0.00 0.00 43.71 4.70
3767 4219 3.483869 GGGCGAATCTGGGCTCCT 61.484 66.667 0.00 0.00 0.00 3.69
3768 4220 2.110006 GGCGAATCTGGGCTCCTC 59.890 66.667 0.00 0.00 0.00 3.71
3769 4221 2.439104 GGCGAATCTGGGCTCCTCT 61.439 63.158 0.00 0.00 0.00 3.69
3770 4222 1.115930 GGCGAATCTGGGCTCCTCTA 61.116 60.000 0.00 0.00 0.00 2.43
3771 4223 0.753262 GCGAATCTGGGCTCCTCTAA 59.247 55.000 0.00 0.00 0.00 2.10
3772 4224 1.139058 GCGAATCTGGGCTCCTCTAAA 59.861 52.381 0.00 0.00 0.00 1.85
3773 4225 2.420129 GCGAATCTGGGCTCCTCTAAAA 60.420 50.000 0.00 0.00 0.00 1.52
3774 4226 3.873910 CGAATCTGGGCTCCTCTAAAAA 58.126 45.455 0.00 0.00 0.00 1.94
3775 4227 3.623510 CGAATCTGGGCTCCTCTAAAAAC 59.376 47.826 0.00 0.00 0.00 2.43
3776 4228 4.589908 GAATCTGGGCTCCTCTAAAAACA 58.410 43.478 0.00 0.00 0.00 2.83
3777 4229 4.870021 ATCTGGGCTCCTCTAAAAACAT 57.130 40.909 0.00 0.00 0.00 2.71
3778 4230 3.955471 TCTGGGCTCCTCTAAAAACATG 58.045 45.455 0.00 0.00 0.00 3.21
3779 4231 3.587061 TCTGGGCTCCTCTAAAAACATGA 59.413 43.478 0.00 0.00 0.00 3.07
3780 4232 3.944015 CTGGGCTCCTCTAAAAACATGAG 59.056 47.826 0.00 0.00 0.00 2.90
3781 4233 2.685388 GGGCTCCTCTAAAAACATGAGC 59.315 50.000 0.00 0.00 43.34 4.26
3782 4234 3.615155 GGCTCCTCTAAAAACATGAGCT 58.385 45.455 0.00 0.00 43.53 4.09
3783 4235 3.376546 GGCTCCTCTAAAAACATGAGCTG 59.623 47.826 0.00 0.00 43.53 4.24
3784 4236 3.376546 GCTCCTCTAAAAACATGAGCTGG 59.623 47.826 0.00 0.00 41.43 4.85
3785 4237 4.583871 CTCCTCTAAAAACATGAGCTGGT 58.416 43.478 0.00 0.00 0.00 4.00
3786 4238 4.985538 TCCTCTAAAAACATGAGCTGGTT 58.014 39.130 0.00 0.00 35.87 3.67
3787 4239 5.003804 TCCTCTAAAAACATGAGCTGGTTC 58.996 41.667 0.00 0.00 32.04 3.62
3883 4335 2.752030 AGCTGGTAGAATCTAGGTGCA 58.248 47.619 9.69 0.00 0.00 4.57
3991 4443 2.283101 GAAGCATGGGGCCACACA 60.283 61.111 11.75 2.26 46.50 3.72
4044 4496 0.600255 GCGACCAACGAGGGATATGG 60.600 60.000 4.18 0.00 45.77 2.74
4046 4498 0.468226 GACCAACGAGGGATATGGCA 59.532 55.000 4.18 0.00 43.89 4.92
4072 4524 4.637534 GTGTGGTGATGTAGCATTCAAGAT 59.362 41.667 0.00 0.00 39.30 2.40
4102 4554 1.214305 ATTCTAGGGCCTTGGCACCA 61.214 55.000 13.45 0.00 0.00 4.17
4289 4741 1.467342 GGTCTCGGTTGTAATGTTGGC 59.533 52.381 0.00 0.00 0.00 4.52
4319 4771 2.143925 GGTCTTGTGTTGAGTGGCTAC 58.856 52.381 0.00 0.00 0.00 3.58
4326 4778 3.625764 TGTGTTGAGTGGCTACTTGTTTC 59.374 43.478 3.47 0.00 37.25 2.78
4454 4907 4.324267 CCGTTCTTTTGAGGGTAGAACAT 58.676 43.478 12.88 0.00 44.98 2.71
4555 5008 3.245264 ACTTACTGCCTTTGTAATGCCCT 60.245 43.478 0.00 0.00 30.73 5.19
4613 5066 3.066208 TCTAGAATGGCCCCAGAGAAT 57.934 47.619 0.00 0.00 0.00 2.40
4734 5187 5.453339 GCTACTGACATGGCAGAATTACCTA 60.453 44.000 35.25 13.64 39.20 3.08
4791 5244 6.363167 TTTCTAAGTTCAAGGGGTCGAATA 57.637 37.500 0.00 0.00 0.00 1.75
5052 5505 6.877668 TGACTAACCACCTAATTCCATGTA 57.122 37.500 0.00 0.00 0.00 2.29
5069 5522 5.043903 CCATGTACGAGTTTCCTCTACATG 58.956 45.833 20.66 20.66 45.34 3.21
5556 6009 6.377996 CCATATCAGAAACTGAACCATTGGAA 59.622 38.462 10.37 0.00 44.04 3.53
5675 6128 3.726557 ACTCAATGATGCAGGAAGGAA 57.273 42.857 0.00 0.00 0.00 3.36
5880 6333 3.575687 ACTGCTTTCAGGAAATGGAAAGG 59.424 43.478 13.94 3.54 46.29 3.11
5895 6348 0.036306 AAAGGCCTGGTACCAGTTCG 59.964 55.000 34.49 22.90 42.15 3.95
5923 6376 1.768275 TGAGAACCAGAACTGAGGCAA 59.232 47.619 3.19 0.00 0.00 4.52
6118 6571 3.242903 TGGTGTAAACAATGCAAGTGTCG 60.243 43.478 6.84 0.00 44.85 4.35
6302 6755 1.741770 GTTCAGCGGCCGTGAGAAT 60.742 57.895 28.70 3.00 0.00 2.40
6440 6893 9.059260 TGTTCCTGGTTTAAGTTCTTATTGTAC 57.941 33.333 0.00 0.00 0.00 2.90
6507 6960 5.229921 TCTACACAAACACAAACTGCTTC 57.770 39.130 0.00 0.00 0.00 3.86
6531 6984 3.589288 AGGAAATGGAAAGACCTGCTACT 59.411 43.478 0.00 0.00 39.86 2.57
6951 7413 4.702131 AGGACTGTCAATGCAGGAATAAAC 59.298 41.667 10.38 0.00 40.59 2.01
7009 7471 1.144503 AGGAATATGCCCCTGCTTCTG 59.855 52.381 0.00 0.00 38.71 3.02
7034 7496 4.099266 TCCTTGTAAAGTTGCAAGCAATGT 59.901 37.500 11.00 0.00 45.65 2.71
7430 7892 5.523916 GCAAGACAGTCTCACTTTGTAAAGA 59.476 40.000 2.72 0.00 39.31 2.52
7498 7960 0.906775 TGTTATTGGAGACCGTCCCC 59.093 55.000 0.00 0.00 46.31 4.81
7568 8030 6.611613 AGATTCTGTGATACCAAGAACTCA 57.388 37.500 0.00 0.00 0.00 3.41
7663 8125 4.577693 GTGATGCTCAAAATCATAGGCTGA 59.422 41.667 0.00 0.00 36.49 4.26
7752 8214 3.057946 GGCAAGCTCAGGTAAACAAAGAG 60.058 47.826 0.00 0.00 0.00 2.85
7762 8224 9.653287 CTCAGGTAAACAAAGAGTATGTCATAA 57.347 33.333 0.00 0.00 0.00 1.90
7764 8226 9.436957 CAGGTAAACAAAGAGTATGTCATAAGT 57.563 33.333 0.00 0.00 0.00 2.24
7803 8265 0.764369 TGGAGTTGTCTCAGCCACCT 60.764 55.000 0.00 0.00 42.05 4.00
7995 8457 5.914033 TCATTGGTTTACGAAGATCCTAGG 58.086 41.667 0.82 0.82 0.00 3.02
8613 9075 2.007049 GCAGGAGCTAAAAGCACGCTA 61.007 52.381 1.22 0.00 45.56 4.26
8749 9220 1.172180 TCGGCAAAAGGGAAGCTGTG 61.172 55.000 0.00 0.00 36.11 3.66
8782 9253 6.732531 TCTGCATTTCTCAAGATGTTAGTG 57.267 37.500 0.00 0.00 0.00 2.74
8815 9287 6.472163 CAGTCGATTGCTTGTAAAAACTTTGT 59.528 34.615 0.00 0.00 0.00 2.83
8847 9319 8.693542 ATGTGCAAGCATATTTTTCTTAGAAC 57.306 30.769 0.00 0.00 0.00 3.01
8872 9344 7.101700 CAGTACTCCCTCCGTAAACTTTTATT 58.898 38.462 0.00 0.00 0.00 1.40
8889 9361 8.011067 ACTTTTATTAGACGTTTTAGGTCACG 57.989 34.615 0.00 0.00 42.29 4.35
8890 9362 6.393720 TTTATTAGACGTTTTAGGTCACGC 57.606 37.500 0.00 0.00 40.16 5.34
8891 9363 3.648339 TTAGACGTTTTAGGTCACGCT 57.352 42.857 0.00 0.00 40.16 5.07
8908 9420 3.186409 CACGCTTACATACCATGGCATAC 59.814 47.826 13.04 0.00 33.60 2.39
8976 9493 2.183555 GGCCTCCTGTTCGTACCG 59.816 66.667 0.00 0.00 0.00 4.02
8984 9501 0.868602 CTGTTCGTACCGGTATGCGG 60.869 60.000 26.20 15.53 0.00 5.69
9011 9531 2.000447 GCAACACATACTCCTTCCGTC 59.000 52.381 0.00 0.00 0.00 4.79
9025 9545 1.828979 TCCGTCCCAAAATAAGTGGC 58.171 50.000 0.00 0.00 34.56 5.01
9027 9547 1.201414 CCGTCCCAAAATAAGTGGCAC 59.799 52.381 10.29 10.29 34.56 5.01
9028 9548 1.883275 CGTCCCAAAATAAGTGGCACA 59.117 47.619 21.41 0.00 34.56 4.57
9041 9561 5.590530 AAGTGGCACATTGAACTAAAACA 57.409 34.783 21.41 0.00 44.52 2.83
9072 9592 6.590677 ACTTATTTTGAAAGCGGAGAGAGTAC 59.409 38.462 0.00 0.00 0.00 2.73
9095 9615 9.891828 GTACTATCAGTTCAGATCTGTAATCTG 57.108 37.037 21.92 21.37 45.08 2.90
9096 9616 7.432869 ACTATCAGTTCAGATCTGTAATCTGC 58.567 38.462 21.92 0.98 43.79 4.26
9100 9620 7.432059 TCAGTTCAGATCTGTAATCTGCATAG 58.568 38.462 21.92 0.00 43.79 2.23
9122 9642 4.344390 AGTCTTCGGTCCAGAAAGTAAAGT 59.656 41.667 0.00 0.00 0.00 2.66
9123 9643 5.055144 GTCTTCGGTCCAGAAAGTAAAGTT 58.945 41.667 0.00 0.00 0.00 2.66
9125 9645 6.365518 GTCTTCGGTCCAGAAAGTAAAGTTAG 59.634 42.308 0.00 0.00 0.00 2.34
9126 9646 5.143376 TCGGTCCAGAAAGTAAAGTTAGG 57.857 43.478 0.00 0.00 0.00 2.69
9127 9647 4.020839 TCGGTCCAGAAAGTAAAGTTAGGG 60.021 45.833 0.00 0.00 0.00 3.53
9129 9649 5.628130 GGTCCAGAAAGTAAAGTTAGGGTT 58.372 41.667 0.00 0.00 0.00 4.11
9130 9650 6.066690 GGTCCAGAAAGTAAAGTTAGGGTTT 58.933 40.000 0.00 0.00 0.00 3.27
9131 9651 7.226441 GGTCCAGAAAGTAAAGTTAGGGTTTA 58.774 38.462 0.00 0.00 0.00 2.01
9132 9652 7.389884 GGTCCAGAAAGTAAAGTTAGGGTTTAG 59.610 40.741 0.00 0.00 0.00 1.85
9133 9653 7.389884 GTCCAGAAAGTAAAGTTAGGGTTTAGG 59.610 40.741 0.00 0.00 0.00 2.69
9134 9654 6.657966 CCAGAAAGTAAAGTTAGGGTTTAGGG 59.342 42.308 0.00 0.00 0.00 3.53
9135 9655 7.229308 CAGAAAGTAAAGTTAGGGTTTAGGGT 58.771 38.462 0.00 0.00 0.00 4.34
9136 9656 7.722728 CAGAAAGTAAAGTTAGGGTTTAGGGTT 59.277 37.037 0.00 0.00 0.00 4.11
9137 9657 8.284435 AGAAAGTAAAGTTAGGGTTTAGGGTTT 58.716 33.333 0.00 0.00 0.00 3.27
9138 9658 8.469309 AAAGTAAAGTTAGGGTTTAGGGTTTC 57.531 34.615 0.00 0.00 0.00 2.78
9139 9659 6.233434 AGTAAAGTTAGGGTTTAGGGTTTCG 58.767 40.000 0.00 0.00 0.00 3.46
9140 9660 3.708403 AGTTAGGGTTTAGGGTTTCGG 57.292 47.619 0.00 0.00 0.00 4.30
9141 9661 2.306805 AGTTAGGGTTTAGGGTTTCGGG 59.693 50.000 0.00 0.00 0.00 5.14
9142 9662 2.040278 GTTAGGGTTTAGGGTTTCGGGT 59.960 50.000 0.00 0.00 0.00 5.28
9143 9663 1.151760 AGGGTTTAGGGTTTCGGGTT 58.848 50.000 0.00 0.00 0.00 4.11
9144 9664 1.500303 AGGGTTTAGGGTTTCGGGTTT 59.500 47.619 0.00 0.00 0.00 3.27
9145 9665 2.715880 AGGGTTTAGGGTTTCGGGTTTA 59.284 45.455 0.00 0.00 0.00 2.01
9146 9666 3.139957 AGGGTTTAGGGTTTCGGGTTTAA 59.860 43.478 0.00 0.00 0.00 1.52
9147 9667 3.507233 GGGTTTAGGGTTTCGGGTTTAAG 59.493 47.826 0.00 0.00 0.00 1.85
9148 9668 3.507233 GGTTTAGGGTTTCGGGTTTAAGG 59.493 47.826 0.00 0.00 0.00 2.69
9161 9681 4.393990 CGGGTTTAAGGTTGGTAGATTCAC 59.606 45.833 0.00 0.00 0.00 3.18
9175 9695 4.822685 AGATTCACTGATCAGCACTTCT 57.177 40.909 22.83 15.95 0.00 2.85
9189 9709 1.208614 CTTCTCTGCGCAACAAGCC 59.791 57.895 13.05 0.00 41.38 4.35
9223 9743 2.751436 GGCGCATGGAAAGCAGGA 60.751 61.111 10.83 0.00 0.00 3.86
9239 9759 4.405548 AGCAGGATTTCTTTCAGAAAGCT 58.594 39.130 17.04 7.05 46.52 3.74
9280 9800 4.941873 ACTGAACTGAAAACGGAAACTTCT 59.058 37.500 0.00 0.00 0.00 2.85
9361 9881 1.375908 GTGCAATCGCCTGAGACCA 60.376 57.895 0.00 0.00 37.32 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.787260 AAACTACCGTGGTGTTGTTTTT 57.213 36.364 0.72 0.00 39.85 1.94
16 17 4.787260 AAAACTACCGTGGTGTTGTTTT 57.213 36.364 18.03 18.03 43.93 2.43
17 18 3.673866 GCAAAACTACCGTGGTGTTGTTT 60.674 43.478 16.73 7.62 42.94 2.83
18 19 2.159352 GCAAAACTACCGTGGTGTTGTT 60.159 45.455 16.73 1.86 35.15 2.83
19 20 1.402613 GCAAAACTACCGTGGTGTTGT 59.597 47.619 16.73 0.00 35.15 3.32
20 21 1.673920 AGCAAAACTACCGTGGTGTTG 59.326 47.619 12.45 12.45 35.62 3.33
21 22 1.673920 CAGCAAAACTACCGTGGTGTT 59.326 47.619 0.72 1.74 36.31 3.32
22 23 1.134340 TCAGCAAAACTACCGTGGTGT 60.134 47.619 0.72 0.00 40.69 4.16
23 24 1.588674 TCAGCAAAACTACCGTGGTG 58.411 50.000 0.72 0.00 41.10 4.17
24 25 2.335316 TTCAGCAAAACTACCGTGGT 57.665 45.000 0.00 0.00 0.00 4.16
25 26 3.368495 GTTTTCAGCAAAACTACCGTGG 58.632 45.455 5.40 0.00 45.53 4.94
40 41 0.878523 CCGGACTGACGCTGTTTTCA 60.879 55.000 0.00 0.00 0.00 2.69
41 42 1.566018 CCCGGACTGACGCTGTTTTC 61.566 60.000 0.73 0.00 0.00 2.29
42 43 1.597027 CCCGGACTGACGCTGTTTT 60.597 57.895 0.73 0.00 0.00 2.43
43 44 2.030562 CCCGGACTGACGCTGTTT 59.969 61.111 0.73 0.00 0.00 2.83
44 45 1.466025 TAACCCGGACTGACGCTGTT 61.466 55.000 0.73 0.00 33.80 3.16
45 46 1.874345 CTAACCCGGACTGACGCTGT 61.874 60.000 0.73 0.00 0.00 4.40
46 47 1.153823 CTAACCCGGACTGACGCTG 60.154 63.158 0.73 0.00 0.00 5.18
47 48 1.183676 AACTAACCCGGACTGACGCT 61.184 55.000 0.73 0.00 0.00 5.07
48 49 0.320160 AAACTAACCCGGACTGACGC 60.320 55.000 0.73 0.00 0.00 5.19
49 50 1.706443 GAAACTAACCCGGACTGACG 58.294 55.000 0.73 0.00 0.00 4.35
50 51 1.000171 ACGAAACTAACCCGGACTGAC 60.000 52.381 0.73 0.00 0.00 3.51
51 52 1.000060 CACGAAACTAACCCGGACTGA 60.000 52.381 0.73 0.00 0.00 3.41
52 53 1.425412 CACGAAACTAACCCGGACTG 58.575 55.000 0.73 0.00 0.00 3.51
53 54 0.320160 GCACGAAACTAACCCGGACT 60.320 55.000 0.73 0.00 0.00 3.85
54 55 0.600782 TGCACGAAACTAACCCGGAC 60.601 55.000 0.73 0.00 0.00 4.79
55 56 0.106335 TTGCACGAAACTAACCCGGA 59.894 50.000 0.73 0.00 0.00 5.14
56 57 0.945813 TTTGCACGAAACTAACCCGG 59.054 50.000 0.00 0.00 0.00 5.73
57 58 2.224549 TGATTTGCACGAAACTAACCCG 59.775 45.455 0.00 0.00 0.00 5.28
58 59 3.907894 TGATTTGCACGAAACTAACCC 57.092 42.857 0.00 0.00 0.00 4.11
59 60 5.106475 TGGTATGATTTGCACGAAACTAACC 60.106 40.000 0.00 0.00 0.00 2.85
60 61 5.933790 TGGTATGATTTGCACGAAACTAAC 58.066 37.500 0.00 0.00 0.00 2.34
61 62 6.561737 TTGGTATGATTTGCACGAAACTAA 57.438 33.333 0.00 0.00 0.00 2.24
62 63 6.561737 TTTGGTATGATTTGCACGAAACTA 57.438 33.333 0.00 0.00 0.00 2.24
63 64 5.446143 TTTGGTATGATTTGCACGAAACT 57.554 34.783 0.00 0.00 0.00 2.66
64 65 5.107645 GGTTTTGGTATGATTTGCACGAAAC 60.108 40.000 0.00 0.00 0.00 2.78
65 66 4.985409 GGTTTTGGTATGATTTGCACGAAA 59.015 37.500 0.00 0.00 0.00 3.46
66 67 4.038042 TGGTTTTGGTATGATTTGCACGAA 59.962 37.500 0.00 0.00 0.00 3.85
67 68 3.570125 TGGTTTTGGTATGATTTGCACGA 59.430 39.130 0.00 0.00 0.00 4.35
68 69 3.906998 TGGTTTTGGTATGATTTGCACG 58.093 40.909 0.00 0.00 0.00 5.34
69 70 8.629158 TCTATATGGTTTTGGTATGATTTGCAC 58.371 33.333 0.00 0.00 0.00 4.57
70 71 8.759481 TCTATATGGTTTTGGTATGATTTGCA 57.241 30.769 0.00 0.00 0.00 4.08
86 87 9.679661 TGTCATGTTACAACAATTCTATATGGT 57.320 29.630 0.00 0.00 43.03 3.55
121 122 9.836076 CGTCTCCAACGTATCTATAATTTATGA 57.164 33.333 0.00 0.00 46.42 2.15
138 139 2.496470 AGAGGGTTGATACGTCTCCAAC 59.504 50.000 15.13 15.13 39.38 3.77
139 140 2.496070 CAGAGGGTTGATACGTCTCCAA 59.504 50.000 0.00 0.00 31.32 3.53
140 141 2.100197 CAGAGGGTTGATACGTCTCCA 58.900 52.381 0.00 0.00 31.32 3.86
141 142 2.099427 GACAGAGGGTTGATACGTCTCC 59.901 54.545 0.00 0.00 31.32 3.71
142 143 2.753452 TGACAGAGGGTTGATACGTCTC 59.247 50.000 0.00 0.00 31.32 3.36
143 144 2.492484 GTGACAGAGGGTTGATACGTCT 59.508 50.000 0.00 0.00 33.73 4.18
144 145 2.416972 GGTGACAGAGGGTTGATACGTC 60.417 54.545 0.00 0.00 0.00 4.34
145 146 1.549170 GGTGACAGAGGGTTGATACGT 59.451 52.381 0.00 0.00 0.00 3.57
146 147 1.469251 CGGTGACAGAGGGTTGATACG 60.469 57.143 0.00 0.00 0.00 3.06
147 148 1.739371 GCGGTGACAGAGGGTTGATAC 60.739 57.143 0.00 0.00 0.00 2.24
148 149 0.535335 GCGGTGACAGAGGGTTGATA 59.465 55.000 0.00 0.00 0.00 2.15
149 150 1.296715 GCGGTGACAGAGGGTTGAT 59.703 57.895 0.00 0.00 0.00 2.57
150 151 2.741092 GCGGTGACAGAGGGTTGA 59.259 61.111 0.00 0.00 0.00 3.18
151 152 2.358737 GGCGGTGACAGAGGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
152 153 4.003788 CGGCGGTGACAGAGGGTT 62.004 66.667 0.00 0.00 0.00 4.11
187 188 2.050623 GATACCGGGCGACGTAGC 60.051 66.667 12.67 12.67 42.24 3.58
240 242 3.782443 GGCGTGGGAGTTCCGGAT 61.782 66.667 4.15 0.00 38.76 4.18
280 282 0.536006 GTATGGGGAGGCAGTGCATC 60.536 60.000 21.20 21.20 38.72 3.91
281 283 1.533711 GTATGGGGAGGCAGTGCAT 59.466 57.895 18.61 10.56 0.00 3.96
325 327 2.034879 CCCCGCATGTCACTGACAC 61.035 63.158 14.20 2.11 45.65 3.67
331 333 2.513897 GTAGGCCCCGCATGTCAC 60.514 66.667 0.00 0.00 0.00 3.67
411 413 7.060421 TCATTTCCTGTAAACCTCTTTTCTGT 58.940 34.615 0.00 0.00 0.00 3.41
412 414 7.445402 TCTCATTTCCTGTAAACCTCTTTTCTG 59.555 37.037 0.00 0.00 0.00 3.02
416 420 8.533569 TTTTCTCATTTCCTGTAAACCTCTTT 57.466 30.769 0.00 0.00 0.00 2.52
449 453 6.474427 CGTATAATTTACGAGAAGTTGGCAGA 59.526 38.462 12.08 0.00 42.94 4.26
453 457 6.753279 TGACCGTATAATTTACGAGAAGTTGG 59.247 38.462 16.57 5.28 42.94 3.77
496 500 5.723860 AGCTCCTCTAAAAATCTTCCCAT 57.276 39.130 0.00 0.00 0.00 4.00
497 501 6.831664 ATAGCTCCTCTAAAAATCTTCCCA 57.168 37.500 0.00 0.00 0.00 4.37
498 502 6.488344 CCAATAGCTCCTCTAAAAATCTTCCC 59.512 42.308 0.00 0.00 0.00 3.97
501 505 7.866870 ACTCCAATAGCTCCTCTAAAAATCTT 58.133 34.615 0.00 0.00 0.00 2.40
503 507 7.467947 GCAACTCCAATAGCTCCTCTAAAAATC 60.468 40.741 0.00 0.00 0.00 2.17
504 508 6.319911 GCAACTCCAATAGCTCCTCTAAAAAT 59.680 38.462 0.00 0.00 0.00 1.82
505 509 5.648092 GCAACTCCAATAGCTCCTCTAAAAA 59.352 40.000 0.00 0.00 0.00 1.94
565 570 7.639113 AATCTTGCACCTCGGAAAATAATTA 57.361 32.000 0.00 0.00 0.00 1.40
576 581 5.990408 GTGGAATAATAATCTTGCACCTCG 58.010 41.667 0.00 0.00 37.63 4.63
580 585 6.463995 TTGGGTGGAATAATAATCTTGCAC 57.536 37.500 0.00 0.00 41.36 4.57
590 595 3.518705 TGCAGCAATTTGGGTGGAATAAT 59.481 39.130 0.00 0.00 36.80 1.28
607 612 5.520022 CTGGAATGTACAAAAATTGCAGC 57.480 39.130 13.33 0.00 42.67 5.25
621 626 3.488778 TGCAAAATTTGGCTGGAATGT 57.511 38.095 18.26 0.00 0.00 2.71
643 683 3.007973 GCCGTCTGACTCTGACCCC 62.008 68.421 6.21 0.00 0.00 4.95
763 805 0.905337 CCCTGGTCTCTTCTTCCCGT 60.905 60.000 0.00 0.00 0.00 5.28
807 850 6.151144 ACCTGACCAGACTGCATTTTATTAAC 59.849 38.462 0.00 0.00 0.00 2.01
891 934 5.861787 CGGAACAAGTTGACAAAAAGAAGTT 59.138 36.000 10.54 0.00 0.00 2.66
1013 1342 0.691078 TATGGAGAAAGCCTCGGCCT 60.691 55.000 0.00 0.00 42.89 5.19
1055 1384 0.323629 TCCCGAGAAAACAAGCGGAT 59.676 50.000 0.00 0.00 46.29 4.18
1316 1645 0.324552 CCAAACCATCTCCCATGCCA 60.325 55.000 0.00 0.00 0.00 4.92
1419 1748 3.430218 CGTACCTTGTGCTTCAGAAAGAG 59.570 47.826 0.00 0.00 34.14 2.85
1425 1754 1.195448 CAAGCGTACCTTGTGCTTCAG 59.805 52.381 13.10 0.00 46.52 3.02
1473 1804 1.725292 GGCTACTAGCGCGAATACTCG 60.725 57.143 12.10 0.00 43.62 4.18
1474 1805 1.725292 CGGCTACTAGCGCGAATACTC 60.725 57.143 12.10 0.00 43.62 2.59
1475 1806 0.237761 CGGCTACTAGCGCGAATACT 59.762 55.000 12.10 0.00 43.62 2.12
1476 1807 0.040603 ACGGCTACTAGCGCGAATAC 60.041 55.000 12.10 0.00 43.62 1.89
1477 1808 0.664761 AACGGCTACTAGCGCGAATA 59.335 50.000 12.10 0.00 43.62 1.75
1478 1809 0.594284 GAACGGCTACTAGCGCGAAT 60.594 55.000 12.10 0.00 43.62 3.34
1480 1811 2.044832 GAGAACGGCTACTAGCGCGA 62.045 60.000 12.10 0.00 43.62 5.87
1481 1812 1.654743 GAGAACGGCTACTAGCGCG 60.655 63.158 0.00 0.00 43.62 6.86
1482 1813 0.592754 CAGAGAACGGCTACTAGCGC 60.593 60.000 0.00 0.00 43.62 5.92
1489 1820 1.001633 GTTGAACCCAGAGAACGGCTA 59.998 52.381 0.00 0.00 0.00 3.93
1708 2039 3.248024 TCTACTTCCAATGTCCACCACT 58.752 45.455 0.00 0.00 0.00 4.00
1709 2040 3.695830 TCTACTTCCAATGTCCACCAC 57.304 47.619 0.00 0.00 0.00 4.16
1710 2041 3.587061 ACATCTACTTCCAATGTCCACCA 59.413 43.478 0.00 0.00 0.00 4.17
1711 2042 4.222124 ACATCTACTTCCAATGTCCACC 57.778 45.455 0.00 0.00 0.00 4.61
1712 2043 7.681939 TTAAACATCTACTTCCAATGTCCAC 57.318 36.000 0.00 0.00 32.63 4.02
1713 2044 7.556275 GGATTAAACATCTACTTCCAATGTCCA 59.444 37.037 0.00 0.00 32.63 4.02
1714 2045 7.556275 TGGATTAAACATCTACTTCCAATGTCC 59.444 37.037 0.00 0.00 32.63 4.02
1715 2046 8.506168 TGGATTAAACATCTACTTCCAATGTC 57.494 34.615 0.00 0.00 32.63 3.06
1971 2302 2.283298 CTTCATTGCCATACAGACGCT 58.717 47.619 0.00 0.00 0.00 5.07
2030 2361 1.859574 AGGCCACCCCTATAATTTGCT 59.140 47.619 5.01 0.00 44.08 3.91
2094 2425 5.013599 CCCTCTTAATCCTATTCCTCCCTTG 59.986 48.000 0.00 0.00 0.00 3.61
2100 2431 5.367060 GTGTGTCCCTCTTAATCCTATTCCT 59.633 44.000 0.00 0.00 0.00 3.36
2101 2432 5.612351 GTGTGTCCCTCTTAATCCTATTCC 58.388 45.833 0.00 0.00 0.00 3.01
2102 2433 5.290386 CGTGTGTCCCTCTTAATCCTATTC 58.710 45.833 0.00 0.00 0.00 1.75
2103 2434 4.443034 GCGTGTGTCCCTCTTAATCCTATT 60.443 45.833 0.00 0.00 0.00 1.73
2104 2435 3.069729 GCGTGTGTCCCTCTTAATCCTAT 59.930 47.826 0.00 0.00 0.00 2.57
2105 2436 2.429610 GCGTGTGTCCCTCTTAATCCTA 59.570 50.000 0.00 0.00 0.00 2.94
2177 2508 4.769345 ATTGGATCTTGAGGTTCCTCTC 57.231 45.455 18.07 8.41 35.42 3.20
2326 2657 3.197983 GGCTTACAAGACCTCTATGTGGT 59.802 47.826 0.00 0.00 41.07 4.16
2422 2756 9.199982 TCTAGTGTTAGCAAAGTATACACAAAC 57.800 33.333 5.50 1.91 41.07 2.93
2425 2759 8.967918 AGATCTAGTGTTAGCAAAGTATACACA 58.032 33.333 5.50 0.00 41.07 3.72
2685 3136 2.101575 CTCCGGACGAATTCGCGA 59.898 61.111 27.03 3.71 44.43 5.87
2727 3178 1.200519 TAGTCTGGGAAATCACCGGG 58.799 55.000 6.32 0.00 35.03 5.73
2838 3290 5.043737 TCGAGGAAGAAGGAAAGGAAAAA 57.956 39.130 0.00 0.00 0.00 1.94
3063 3515 3.216800 CCGACATCACCATGGATTCATT 58.783 45.455 21.47 0.00 33.82 2.57
3123 3575 0.114954 ACCCACACATCAATGCCCTT 59.885 50.000 0.00 0.00 0.00 3.95
3155 3607 2.421739 GACATAGGCGATGGCGGT 59.578 61.111 12.31 0.00 40.18 5.68
3190 3642 2.325661 TTGTGGATGAGAGAGGTGGA 57.674 50.000 0.00 0.00 0.00 4.02
3281 3733 2.743928 CAGGCACCGCTCTGGAAC 60.744 66.667 0.00 0.00 42.00 3.62
3652 4104 1.077716 CGAGGGTTGGGGGTGAATC 60.078 63.158 0.00 0.00 0.00 2.52
3685 4137 5.007921 GCAAGCCAAATCATGTTTTTCACTT 59.992 36.000 0.00 1.88 0.00 3.16
3714 4166 1.442520 CTGCGCCACGACAATTTGG 60.443 57.895 4.18 0.00 35.81 3.28
3742 4194 1.032114 CCAGATTCGCCCCCAACTTC 61.032 60.000 0.00 0.00 0.00 3.01
3743 4195 1.000896 CCAGATTCGCCCCCAACTT 60.001 57.895 0.00 0.00 0.00 2.66
3744 4196 2.677228 CCAGATTCGCCCCCAACT 59.323 61.111 0.00 0.00 0.00 3.16
3745 4197 2.440247 CCCAGATTCGCCCCCAAC 60.440 66.667 0.00 0.00 0.00 3.77
3746 4198 4.440829 GCCCAGATTCGCCCCCAA 62.441 66.667 0.00 0.00 0.00 4.12
3748 4200 4.570874 GAGCCCAGATTCGCCCCC 62.571 72.222 0.00 0.00 0.00 5.40
3749 4201 4.570874 GGAGCCCAGATTCGCCCC 62.571 72.222 0.00 0.00 0.00 5.80
3750 4202 3.468326 GAGGAGCCCAGATTCGCCC 62.468 68.421 0.00 0.00 0.00 6.13
3751 4203 1.115930 TAGAGGAGCCCAGATTCGCC 61.116 60.000 0.00 0.00 0.00 5.54
3752 4204 0.753262 TTAGAGGAGCCCAGATTCGC 59.247 55.000 0.00 0.00 0.00 4.70
3753 4205 3.543680 TTTTAGAGGAGCCCAGATTCG 57.456 47.619 0.00 0.00 0.00 3.34
3754 4206 4.589908 TGTTTTTAGAGGAGCCCAGATTC 58.410 43.478 0.00 0.00 0.00 2.52
3755 4207 4.657814 TGTTTTTAGAGGAGCCCAGATT 57.342 40.909 0.00 0.00 0.00 2.40
3756 4208 4.228210 TCATGTTTTTAGAGGAGCCCAGAT 59.772 41.667 0.00 0.00 0.00 2.90
3757 4209 3.587061 TCATGTTTTTAGAGGAGCCCAGA 59.413 43.478 0.00 0.00 0.00 3.86
3758 4210 3.944015 CTCATGTTTTTAGAGGAGCCCAG 59.056 47.826 0.00 0.00 0.00 4.45
3759 4211 3.873801 GCTCATGTTTTTAGAGGAGCCCA 60.874 47.826 0.00 0.00 41.31 5.36
3760 4212 2.685388 GCTCATGTTTTTAGAGGAGCCC 59.315 50.000 0.00 0.00 41.31 5.19
3761 4213 3.376546 CAGCTCATGTTTTTAGAGGAGCC 59.623 47.826 7.73 0.00 46.64 4.70
3762 4214 3.376546 CCAGCTCATGTTTTTAGAGGAGC 59.623 47.826 0.00 0.00 46.01 4.70
3763 4215 4.583871 ACCAGCTCATGTTTTTAGAGGAG 58.416 43.478 0.00 0.00 0.00 3.69
3764 4216 4.640771 ACCAGCTCATGTTTTTAGAGGA 57.359 40.909 0.00 0.00 0.00 3.71
3765 4217 4.156739 GGAACCAGCTCATGTTTTTAGAGG 59.843 45.833 0.00 0.00 0.00 3.69
3766 4218 5.302357 GGAACCAGCTCATGTTTTTAGAG 57.698 43.478 0.00 0.00 0.00 2.43
3784 4236 3.314357 ACAACGCTTAGAACAAAGGGAAC 59.686 43.478 7.54 0.00 40.77 3.62
3785 4237 3.547746 ACAACGCTTAGAACAAAGGGAA 58.452 40.909 7.54 0.00 40.77 3.97
3786 4238 3.202829 ACAACGCTTAGAACAAAGGGA 57.797 42.857 7.54 0.00 40.77 4.20
3787 4239 3.564225 AGAACAACGCTTAGAACAAAGGG 59.436 43.478 0.00 0.00 43.14 3.95
3841 4293 2.425592 CCAAGGCGAGTGTCACCA 59.574 61.111 0.00 0.00 0.00 4.17
3883 4335 1.538047 CATGTTGCAGCCTTGTAGGT 58.462 50.000 0.00 0.00 37.80 3.08
3991 4443 3.313526 GCAATCATCAGCCGATACTTGTT 59.686 43.478 5.85 0.00 30.42 2.83
4044 4496 0.804989 GCTACATCACCACACCTTGC 59.195 55.000 0.00 0.00 0.00 4.01
4046 4498 3.244875 TGAATGCTACATCACCACACCTT 60.245 43.478 0.00 0.00 0.00 3.50
4072 4524 1.144716 CCTAGAATCGCTGCTGGCA 59.855 57.895 0.00 0.00 41.91 4.92
4102 4554 1.078426 GCCGGCCTCACACTACAAT 60.078 57.895 18.11 0.00 0.00 2.71
4289 4741 2.113139 ACAAGACCGGCTGTTGGG 59.887 61.111 0.00 0.00 0.00 4.12
4319 4771 3.371285 GCCTAAGACTAAGCCGAAACAAG 59.629 47.826 0.00 0.00 0.00 3.16
4326 4778 2.674796 ACAAGCCTAAGACTAAGCCG 57.325 50.000 0.00 0.00 0.00 5.52
4454 4907 2.950975 CACACTATATGCACCATTGGCA 59.049 45.455 1.54 0.00 46.66 4.92
4555 5008 2.105821 CAGGAACTAGTGGGTTTGGTCA 59.894 50.000 0.00 0.00 36.02 4.02
4613 5066 2.972713 ACTTTGTCCTCACTCTGGCTAA 59.027 45.455 0.00 0.00 0.00 3.09
4689 5142 5.469479 AGCTTAATTGACCAAAATTCACCG 58.531 37.500 0.00 0.00 32.16 4.94
4734 5187 2.629617 CCACAGGGCAGTCAAAATTTCT 59.370 45.455 0.00 0.00 0.00 2.52
4811 5264 6.600388 AGGCCCAAAACAAAATCAAAACTAT 58.400 32.000 0.00 0.00 0.00 2.12
5015 5468 9.710818 AGGTGGTTAGTCAATAGAACTTCTATA 57.289 33.333 11.07 0.00 38.66 1.31
5069 5522 5.488341 TGAGAATAACAAGGTAAGCTGACC 58.512 41.667 13.05 13.05 40.08 4.02
5168 5621 3.456380 ACAAACCCTTATGGAGCATGT 57.544 42.857 0.00 0.00 38.00 3.21
5599 6052 5.614324 TCCTTCTTCACTGAGTCTTCAAA 57.386 39.130 0.00 0.00 31.69 2.69
5675 6128 4.840716 AACTCAGCAGAGGAAGAATGAT 57.159 40.909 11.18 0.00 46.44 2.45
5835 6288 3.597255 TGTGTTTGTGTAGAAACGACCA 58.403 40.909 0.00 0.00 38.46 4.02
5895 6348 2.358737 CTGGTTCTCACGGCCACC 60.359 66.667 2.24 1.31 0.00 4.61
6118 6571 3.942115 GGAAGACTAGTTTTCTCCATGGC 59.058 47.826 21.62 3.97 0.00 4.40
6440 6893 0.673644 ACCAGATTTTGCTCCGTCGG 60.674 55.000 4.39 4.39 0.00 4.79
6531 6984 1.529152 TTCTCACGGCCGCTGAACTA 61.529 55.000 28.58 12.84 0.00 2.24
6693 7146 3.244875 TGCTAGAACCAGATTTTGCTCCA 60.245 43.478 0.00 0.00 0.00 3.86
6951 7413 0.463295 AGGAAGACATGCCATCTGCG 60.463 55.000 0.00 0.00 45.60 5.18
6998 7460 0.111253 ACAAGGAACAGAAGCAGGGG 59.889 55.000 0.00 0.00 0.00 4.79
7009 7471 4.040445 TGCTTGCAACTTTACAAGGAAC 57.960 40.909 0.00 0.00 40.64 3.62
7034 7496 7.819415 CCACAGACTTTCTACTTTCATGATACA 59.181 37.037 0.00 0.00 0.00 2.29
7072 7534 4.586001 ACCTTGGTCATCCATTGATAATGC 59.414 41.667 0.00 0.00 43.91 3.56
7346 7808 3.804036 TCACGTCTCACAAAACCATCTT 58.196 40.909 0.00 0.00 0.00 2.40
7430 7892 1.974236 GTACCTCCTGCTCCATGCTAT 59.026 52.381 0.00 0.00 43.37 2.97
7498 7960 2.673043 GCAACTGGCATGAAACTGATGG 60.673 50.000 0.00 0.00 43.97 3.51
7568 8030 8.404000 GCAAAGTATCTGAAGATTCATGAACAT 58.596 33.333 11.07 0.00 36.46 2.71
7663 8125 7.661437 TGCTGAAGAAACAATATTAGTCTGTGT 59.339 33.333 0.00 0.00 0.00 3.72
7752 8214 7.553334 TGGTCCTTGAGTTACTTATGACATAC 58.447 38.462 0.00 0.00 0.00 2.39
7762 8224 1.729586 TGCCTGGTCCTTGAGTTACT 58.270 50.000 0.00 0.00 0.00 2.24
7764 8226 3.136443 CCATATGCCTGGTCCTTGAGTTA 59.864 47.826 0.00 0.00 0.00 2.24
7803 8265 5.022282 TCCGATGAATGCTTATCAACTCA 57.978 39.130 0.00 0.00 0.00 3.41
7995 8457 1.505425 GTTGGTGGGTACGAACAGAC 58.495 55.000 0.00 0.00 42.79 3.51
8421 8883 3.071479 TGACCAGCCAAACGAGTATTTC 58.929 45.455 0.00 0.00 0.00 2.17
8548 9010 2.023673 TGCTTCAACAACTGGAACTGG 58.976 47.619 0.00 0.00 0.00 4.00
8613 9075 5.183713 TGGCATCTTTGAATGATCGTTCTTT 59.816 36.000 24.46 6.06 0.00 2.52
8749 9220 3.758554 TGAGAAATGCAGAAAAGGCTACC 59.241 43.478 0.00 0.00 0.00 3.18
8831 9303 9.892130 AGGGAGTACTGTTCTAAGAAAAATATG 57.108 33.333 0.00 0.00 0.00 1.78
8847 9319 4.532314 AAAGTTTACGGAGGGAGTACTG 57.468 45.455 0.00 0.00 0.00 2.74
8872 9344 3.648339 AAGCGTGACCTAAAACGTCTA 57.352 42.857 0.00 0.00 41.76 2.59
8889 9361 3.750371 TGGTATGCCATGGTATGTAAGC 58.250 45.455 24.13 14.61 40.46 3.09
8908 9420 2.671596 CAATTTAACCCGTGCTTGTGG 58.328 47.619 0.00 0.00 0.00 4.17
8984 9501 0.721718 GAGTATGTGTTGCGCCAGAC 59.278 55.000 4.18 2.58 0.00 3.51
9011 9531 4.533919 TCAATGTGCCACTTATTTTGGG 57.466 40.909 0.00 0.00 34.35 4.12
9025 9545 6.035843 AGTGTTGCTGTTTTAGTTCAATGTG 58.964 36.000 0.00 0.00 0.00 3.21
9027 9547 8.801715 ATAAGTGTTGCTGTTTTAGTTCAATG 57.198 30.769 0.00 0.00 0.00 2.82
9028 9548 9.816354 AAATAAGTGTTGCTGTTTTAGTTCAAT 57.184 25.926 0.00 0.00 0.00 2.57
9041 9561 4.037446 TCCGCTTTCAAAATAAGTGTTGCT 59.963 37.500 0.00 0.00 32.57 3.91
9072 9592 7.432059 TGCAGATTACAGATCTGAACTGATAG 58.568 38.462 29.27 11.94 46.25 2.08
9095 9615 2.961526 TTCTGGACCGAAGACTATGC 57.038 50.000 0.00 0.00 0.00 3.14
9096 9616 4.457834 ACTTTCTGGACCGAAGACTATG 57.542 45.455 8.55 0.00 0.00 2.23
9100 9620 4.629092 ACTTTACTTTCTGGACCGAAGAC 58.371 43.478 8.55 0.00 0.00 3.01
9122 9642 2.347500 ACCCGAAACCCTAAACCCTAA 58.653 47.619 0.00 0.00 0.00 2.69
9123 9643 2.043307 ACCCGAAACCCTAAACCCTA 57.957 50.000 0.00 0.00 0.00 3.53
9125 9645 1.999648 AAACCCGAAACCCTAAACCC 58.000 50.000 0.00 0.00 0.00 4.11
9126 9646 3.507233 CCTTAAACCCGAAACCCTAAACC 59.493 47.826 0.00 0.00 0.00 3.27
9127 9647 4.144297 ACCTTAAACCCGAAACCCTAAAC 58.856 43.478 0.00 0.00 0.00 2.01
9129 9649 4.143543 CAACCTTAAACCCGAAACCCTAA 58.856 43.478 0.00 0.00 0.00 2.69
9130 9650 3.498301 CCAACCTTAAACCCGAAACCCTA 60.498 47.826 0.00 0.00 0.00 3.53
9131 9651 2.589720 CAACCTTAAACCCGAAACCCT 58.410 47.619 0.00 0.00 0.00 4.34
9132 9652 1.614903 CCAACCTTAAACCCGAAACCC 59.385 52.381 0.00 0.00 0.00 4.11
9133 9653 2.309613 ACCAACCTTAAACCCGAAACC 58.690 47.619 0.00 0.00 0.00 3.27
9134 9654 4.388485 TCTACCAACCTTAAACCCGAAAC 58.612 43.478 0.00 0.00 0.00 2.78
9135 9655 4.703379 TCTACCAACCTTAAACCCGAAA 57.297 40.909 0.00 0.00 0.00 3.46
9136 9656 4.914177 ATCTACCAACCTTAAACCCGAA 57.086 40.909 0.00 0.00 0.00 4.30
9137 9657 4.286549 TGAATCTACCAACCTTAAACCCGA 59.713 41.667 0.00 0.00 0.00 5.14
9138 9658 4.393990 GTGAATCTACCAACCTTAAACCCG 59.606 45.833 0.00 0.00 0.00 5.28
9139 9659 5.414765 CAGTGAATCTACCAACCTTAAACCC 59.585 44.000 0.00 0.00 0.00 4.11
9140 9660 6.235664 TCAGTGAATCTACCAACCTTAAACC 58.764 40.000 0.00 0.00 0.00 3.27
9141 9661 7.606456 TGATCAGTGAATCTACCAACCTTAAAC 59.394 37.037 0.00 0.00 0.00 2.01
9142 9662 7.685481 TGATCAGTGAATCTACCAACCTTAAA 58.315 34.615 0.00 0.00 0.00 1.52
9143 9663 7.252612 TGATCAGTGAATCTACCAACCTTAA 57.747 36.000 0.00 0.00 0.00 1.85
9144 9664 6.630413 GCTGATCAGTGAATCTACCAACCTTA 60.630 42.308 23.38 0.00 0.00 2.69
9145 9665 5.738909 CTGATCAGTGAATCTACCAACCTT 58.261 41.667 14.95 0.00 0.00 3.50
9146 9666 4.383552 GCTGATCAGTGAATCTACCAACCT 60.384 45.833 23.38 0.00 0.00 3.50
9147 9667 3.873952 GCTGATCAGTGAATCTACCAACC 59.126 47.826 23.38 0.00 0.00 3.77
9148 9668 4.331168 GTGCTGATCAGTGAATCTACCAAC 59.669 45.833 23.38 3.16 0.00 3.77
9161 9681 1.279152 CGCAGAGAAGTGCTGATCAG 58.721 55.000 18.84 18.84 41.62 2.90
9175 9695 2.979676 CCTGGCTTGTTGCGCAGA 60.980 61.111 11.31 0.00 44.05 4.26
9189 9709 0.951040 GCCTGTCGTTGTCTTCCCTG 60.951 60.000 0.00 0.00 0.00 4.45
9239 9759 2.506957 TTCAGAGTCAGTGGGCGCA 61.507 57.895 10.83 0.00 0.00 6.09
9280 9800 3.432186 GCTACCTTAGGTGACATGCATCA 60.432 47.826 15.13 0.00 36.19 3.07
9329 9849 4.683334 GCACGTTTCGCCAGCACC 62.683 66.667 0.00 0.00 0.00 5.01
9330 9850 2.731587 ATTGCACGTTTCGCCAGCAC 62.732 55.000 0.00 0.00 33.73 4.40
9361 9881 4.218312 AGGAAAGCAAGAACAAACTGGAT 58.782 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.