Multiple sequence alignment - TraesCS3D01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G282900 chr3D 100.000 3350 0 0 1 3350 391248429 391245080 0.000000e+00 6187.0
1 TraesCS3D01G282900 chr3D 93.952 248 8 4 246 492 391253798 391253557 5.280000e-98 368.0
2 TraesCS3D01G282900 chr3D 89.474 228 21 3 17 243 580419681 580419456 5.470000e-73 285.0
3 TraesCS3D01G282900 chr3D 89.767 215 21 1 27 241 585980054 585980267 1.180000e-69 274.0
4 TraesCS3D01G282900 chr3A 92.555 2364 95 37 321 2652 511599458 511597144 0.000000e+00 3315.0
5 TraesCS3D01G282900 chr3A 93.651 189 7 4 2860 3045 22442350 22442164 9.150000e-71 278.0
6 TraesCS3D01G282900 chr3A 92.632 190 8 5 2861 3044 562342462 562342273 5.510000e-68 268.0
7 TraesCS3D01G282900 chr3A 88.235 136 10 5 3151 3285 511596840 511596710 1.240000e-34 158.0
8 TraesCS3D01G282900 chr3A 88.889 99 8 1 3048 3143 511596923 511596825 5.870000e-23 119.0
9 TraesCS3D01G282900 chr3A 97.872 47 1 0 3282 3328 511596438 511596392 7.700000e-12 82.4
10 TraesCS3D01G282900 chr3B 93.312 2198 79 19 316 2467 508475730 508473555 0.000000e+00 3182.0
11 TraesCS3D01G282900 chr3B 89.055 201 13 4 3152 3350 508473307 508473114 1.200000e-59 241.0
12 TraesCS3D01G282900 chr3B 90.541 74 2 4 246 319 508475878 508475810 3.560000e-15 93.5
13 TraesCS3D01G282900 chr1D 81.008 1190 184 32 997 2159 439216637 439215463 0.000000e+00 907.0
14 TraesCS3D01G282900 chr1D 88.546 227 20 4 17 243 306669758 306669538 1.530000e-68 270.0
15 TraesCS3D01G282900 chr1A 80.177 1241 205 35 997 2209 535436459 535435232 0.000000e+00 891.0
16 TraesCS3D01G282900 chr1A 93.583 187 9 3 2861 3044 42218026 42218212 3.290000e-70 276.0
17 TraesCS3D01G282900 chr1B 80.948 1118 186 23 1058 2157 595638841 595637733 0.000000e+00 859.0
18 TraesCS3D01G282900 chr1B 89.238 223 22 2 17 239 687782368 687782588 9.150000e-71 278.0
19 TraesCS3D01G282900 chr2B 91.628 215 17 1 27 241 126881193 126880980 2.530000e-76 296.0
20 TraesCS3D01G282900 chr2B 91.163 215 18 1 27 241 126921204 126920991 1.180000e-74 291.0
21 TraesCS3D01G282900 chr7A 93.684 190 8 4 2861 3046 40742843 40742654 7.080000e-72 281.0
22 TraesCS3D01G282900 chr7A 93.651 189 8 4 2861 3045 78222420 78222608 2.550000e-71 279.0
23 TraesCS3D01G282900 chr5A 94.118 187 8 3 2861 3044 11020451 11020637 7.080000e-72 281.0
24 TraesCS3D01G282900 chr5A 88.987 227 23 2 17 243 123979611 123979835 2.550000e-71 279.0
25 TraesCS3D01G282900 chr2D 89.333 225 22 2 17 241 194452264 194452042 7.080000e-72 281.0
26 TraesCS3D01G282900 chr2D 88.546 227 23 3 17 243 598725187 598725410 4.260000e-69 272.0
27 TraesCS3D01G282900 chr7D 92.513 187 10 4 2860 3043 485024353 485024538 7.130000e-67 265.0
28 TraesCS3D01G282900 chr6B 92.063 189 11 4 2860 3044 59733431 59733619 2.560000e-66 263.0
29 TraesCS3D01G282900 chr4D 90.816 196 9 5 2858 3044 450162206 450162401 1.540000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G282900 chr3D 391245080 391248429 3349 True 6187.000000 6187 100.000000 1 3350 1 chr3D.!!$R1 3349
1 TraesCS3D01G282900 chr3A 511596392 511599458 3066 True 918.600000 3315 91.887750 321 3328 4 chr3A.!!$R3 3007
2 TraesCS3D01G282900 chr3B 508473114 508475878 2764 True 1172.166667 3182 90.969333 246 3350 3 chr3B.!!$R1 3104
3 TraesCS3D01G282900 chr1D 439215463 439216637 1174 True 907.000000 907 81.008000 997 2159 1 chr1D.!!$R2 1162
4 TraesCS3D01G282900 chr1A 535435232 535436459 1227 True 891.000000 891 80.177000 997 2209 1 chr1A.!!$R1 1212
5 TraesCS3D01G282900 chr1B 595637733 595638841 1108 True 859.000000 859 80.948000 1058 2157 1 chr1B.!!$R1 1099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.106894 CCTACGAATCAAGGAGGGCC 59.893 60.0 0.00 0.0 34.58 5.80 F
703 794 0.107897 ATATGCGCGGTTCCTTGTGA 60.108 50.0 8.83 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2164 2.435805 CAGGTGGTATATCCTGTGCAGT 59.564 50.0 11.15 0.0 44.19 4.40 R
2657 2817 0.041238 TCTGGGTGGATCGAGGAGTT 59.959 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.421249 TTCAACTTTCAATATGGTTGAATCCT 57.579 30.769 13.65 0.00 46.63 3.24
35 36 9.527157 TTCAACTTTCAATATGGTTGAATCCTA 57.473 29.630 13.65 0.00 46.63 2.94
36 37 9.699410 TCAACTTTCAATATGGTTGAATCCTAT 57.301 29.630 8.38 0.00 42.97 2.57
93 94 8.571461 GATTTCATTGAAAATCTAGCATCCAC 57.429 34.615 15.34 0.00 40.77 4.02
94 95 7.707624 TTTCATTGAAAATCTAGCATCCACT 57.292 32.000 9.36 0.00 0.00 4.00
95 96 6.932356 TCATTGAAAATCTAGCATCCACTC 57.068 37.500 0.00 0.00 0.00 3.51
96 97 5.824624 TCATTGAAAATCTAGCATCCACTCC 59.175 40.000 0.00 0.00 0.00 3.85
97 98 4.842531 TGAAAATCTAGCATCCACTCCA 57.157 40.909 0.00 0.00 0.00 3.86
98 99 5.178096 TGAAAATCTAGCATCCACTCCAA 57.822 39.130 0.00 0.00 0.00 3.53
99 100 4.943705 TGAAAATCTAGCATCCACTCCAAC 59.056 41.667 0.00 0.00 0.00 3.77
100 101 3.567478 AATCTAGCATCCACTCCAACC 57.433 47.619 0.00 0.00 0.00 3.77
101 102 2.254152 TCTAGCATCCACTCCAACCT 57.746 50.000 0.00 0.00 0.00 3.50
102 103 2.111384 TCTAGCATCCACTCCAACCTC 58.889 52.381 0.00 0.00 0.00 3.85
103 104 2.114616 CTAGCATCCACTCCAACCTCT 58.885 52.381 0.00 0.00 0.00 3.69
104 105 1.366319 AGCATCCACTCCAACCTCTT 58.634 50.000 0.00 0.00 0.00 2.85
105 106 1.707427 AGCATCCACTCCAACCTCTTT 59.293 47.619 0.00 0.00 0.00 2.52
106 107 2.108952 AGCATCCACTCCAACCTCTTTT 59.891 45.455 0.00 0.00 0.00 2.27
107 108 2.893489 GCATCCACTCCAACCTCTTTTT 59.107 45.455 0.00 0.00 0.00 1.94
128 129 4.379339 TTCACTTCCTTTGTTTTTCCCG 57.621 40.909 0.00 0.00 0.00 5.14
129 130 3.358118 TCACTTCCTTTGTTTTTCCCGT 58.642 40.909 0.00 0.00 0.00 5.28
130 131 3.129638 TCACTTCCTTTGTTTTTCCCGTG 59.870 43.478 0.00 0.00 0.00 4.94
131 132 2.429250 ACTTCCTTTGTTTTTCCCGTGG 59.571 45.455 0.00 0.00 0.00 4.94
132 133 0.747852 TCCTTTGTTTTTCCCGTGGC 59.252 50.000 0.00 0.00 0.00 5.01
133 134 0.461961 CCTTTGTTTTTCCCGTGGCA 59.538 50.000 0.00 0.00 0.00 4.92
134 135 1.069978 CCTTTGTTTTTCCCGTGGCAT 59.930 47.619 0.00 0.00 0.00 4.40
135 136 2.484594 CCTTTGTTTTTCCCGTGGCATT 60.485 45.455 0.00 0.00 0.00 3.56
136 137 3.243907 CCTTTGTTTTTCCCGTGGCATTA 60.244 43.478 0.00 0.00 0.00 1.90
137 138 4.372656 CTTTGTTTTTCCCGTGGCATTAA 58.627 39.130 0.00 0.00 0.00 1.40
138 139 4.402056 TTGTTTTTCCCGTGGCATTAAA 57.598 36.364 0.00 0.00 0.00 1.52
139 140 3.718815 TGTTTTTCCCGTGGCATTAAAC 58.281 40.909 0.00 0.00 0.00 2.01
140 141 3.132289 TGTTTTTCCCGTGGCATTAAACA 59.868 39.130 0.00 0.00 33.22 2.83
141 142 3.372660 TTTTCCCGTGGCATTAAACAC 57.627 42.857 0.00 0.00 0.00 3.32
142 143 1.249407 TTCCCGTGGCATTAAACACC 58.751 50.000 0.00 0.00 34.18 4.16
143 144 0.609681 TCCCGTGGCATTAAACACCC 60.610 55.000 0.00 0.00 34.18 4.61
144 145 0.610785 CCCGTGGCATTAAACACCCT 60.611 55.000 0.00 0.00 34.18 4.34
145 146 0.525761 CCGTGGCATTAAACACCCTG 59.474 55.000 0.00 0.00 34.18 4.45
146 147 1.243902 CGTGGCATTAAACACCCTGT 58.756 50.000 0.00 0.00 34.18 4.00
147 148 1.068610 CGTGGCATTAAACACCCTGTG 60.069 52.381 0.00 0.00 39.75 3.66
148 149 0.965439 TGGCATTAAACACCCTGTGC 59.035 50.000 0.00 0.00 36.98 4.57
149 150 1.256812 GGCATTAAACACCCTGTGCT 58.743 50.000 0.00 0.00 36.98 4.40
150 151 2.224892 TGGCATTAAACACCCTGTGCTA 60.225 45.455 0.00 0.00 36.98 3.49
151 152 2.823154 GGCATTAAACACCCTGTGCTAA 59.177 45.455 0.00 0.00 36.98 3.09
152 153 3.447229 GGCATTAAACACCCTGTGCTAAT 59.553 43.478 0.00 0.00 36.98 1.73
153 154 4.081697 GGCATTAAACACCCTGTGCTAATT 60.082 41.667 0.00 0.00 36.98 1.40
154 155 5.102313 GCATTAAACACCCTGTGCTAATTC 58.898 41.667 0.00 0.00 36.98 2.17
155 156 5.105756 GCATTAAACACCCTGTGCTAATTCT 60.106 40.000 0.00 0.00 36.98 2.40
156 157 6.094881 GCATTAAACACCCTGTGCTAATTCTA 59.905 38.462 0.00 0.00 36.98 2.10
157 158 7.201821 GCATTAAACACCCTGTGCTAATTCTAT 60.202 37.037 0.00 0.00 36.98 1.98
158 159 7.624360 TTAAACACCCTGTGCTAATTCTATG 57.376 36.000 0.00 0.00 36.98 2.23
159 160 4.156455 ACACCCTGTGCTAATTCTATGG 57.844 45.455 0.00 0.00 36.98 2.74
160 161 3.117888 ACACCCTGTGCTAATTCTATGGG 60.118 47.826 0.00 0.00 36.98 4.00
161 162 3.136443 CACCCTGTGCTAATTCTATGGGA 59.864 47.826 0.00 0.00 37.25 4.37
162 163 3.983410 ACCCTGTGCTAATTCTATGGGAT 59.017 43.478 0.00 0.00 37.25 3.85
163 164 4.416848 ACCCTGTGCTAATTCTATGGGATT 59.583 41.667 0.00 0.00 37.25 3.01
164 165 5.006386 CCCTGTGCTAATTCTATGGGATTC 58.994 45.833 0.00 0.00 35.64 2.52
165 166 5.456619 CCCTGTGCTAATTCTATGGGATTCA 60.457 44.000 0.00 0.00 35.64 2.57
166 167 6.064060 CCTGTGCTAATTCTATGGGATTCAA 58.936 40.000 0.00 0.00 0.00 2.69
167 168 6.206243 CCTGTGCTAATTCTATGGGATTCAAG 59.794 42.308 0.00 0.00 0.00 3.02
168 169 6.662755 TGTGCTAATTCTATGGGATTCAAGT 58.337 36.000 0.00 0.00 0.00 3.16
169 170 6.543465 TGTGCTAATTCTATGGGATTCAAGTG 59.457 38.462 0.00 0.00 0.00 3.16
170 171 6.016777 GTGCTAATTCTATGGGATTCAAGTGG 60.017 42.308 0.00 0.00 0.00 4.00
171 172 5.474876 GCTAATTCTATGGGATTCAAGTGGG 59.525 44.000 0.00 0.00 0.00 4.61
172 173 3.297134 TTCTATGGGATTCAAGTGGGC 57.703 47.619 0.00 0.00 0.00 5.36
173 174 2.204463 TCTATGGGATTCAAGTGGGCA 58.796 47.619 0.00 0.00 0.00 5.36
174 175 2.785269 TCTATGGGATTCAAGTGGGCAT 59.215 45.455 0.00 0.00 0.00 4.40
175 176 2.555732 ATGGGATTCAAGTGGGCATT 57.444 45.000 0.00 0.00 0.00 3.56
176 177 1.559368 TGGGATTCAAGTGGGCATTG 58.441 50.000 0.00 0.00 0.00 2.82
177 178 0.176449 GGGATTCAAGTGGGCATTGC 59.824 55.000 0.00 0.00 0.00 3.56
191 192 3.323751 GCATTGCCACTCCAATCTTTT 57.676 42.857 0.00 0.00 33.35 2.27
192 193 4.454728 GCATTGCCACTCCAATCTTTTA 57.545 40.909 0.00 0.00 33.35 1.52
193 194 5.014808 GCATTGCCACTCCAATCTTTTAT 57.985 39.130 0.00 0.00 33.35 1.40
194 195 5.422145 GCATTGCCACTCCAATCTTTTATT 58.578 37.500 0.00 0.00 33.35 1.40
195 196 5.876460 GCATTGCCACTCCAATCTTTTATTT 59.124 36.000 0.00 0.00 33.35 1.40
196 197 6.372381 GCATTGCCACTCCAATCTTTTATTTT 59.628 34.615 0.00 0.00 33.35 1.82
197 198 7.094677 GCATTGCCACTCCAATCTTTTATTTTT 60.095 33.333 0.00 0.00 33.35 1.94
217 218 5.676532 TTTTCTATTTCCGCGTTTTGAGA 57.323 34.783 4.92 0.00 0.00 3.27
218 219 5.676532 TTTCTATTTCCGCGTTTTGAGAA 57.323 34.783 4.92 5.64 0.00 2.87
219 220 5.873179 TTCTATTTCCGCGTTTTGAGAAT 57.127 34.783 4.92 1.41 0.00 2.40
220 221 5.464965 TCTATTTCCGCGTTTTGAGAATC 57.535 39.130 4.92 0.00 0.00 2.52
221 222 2.981400 TTTCCGCGTTTTGAGAATCC 57.019 45.000 4.92 0.00 0.00 3.01
222 223 2.178912 TTCCGCGTTTTGAGAATCCT 57.821 45.000 4.92 0.00 0.00 3.24
223 224 3.322211 TTCCGCGTTTTGAGAATCCTA 57.678 42.857 4.92 0.00 0.00 2.94
224 225 2.613691 TCCGCGTTTTGAGAATCCTAC 58.386 47.619 4.92 0.00 0.00 3.18
225 226 1.323534 CCGCGTTTTGAGAATCCTACG 59.676 52.381 4.92 0.00 35.96 3.51
226 227 2.256174 CGCGTTTTGAGAATCCTACGA 58.744 47.619 0.00 0.00 35.22 3.43
227 228 2.664568 CGCGTTTTGAGAATCCTACGAA 59.335 45.455 0.00 0.00 35.22 3.85
228 229 3.306166 CGCGTTTTGAGAATCCTACGAAT 59.694 43.478 0.00 0.00 35.22 3.34
229 230 4.548346 CGCGTTTTGAGAATCCTACGAATC 60.548 45.833 0.00 0.00 35.22 2.52
230 231 4.328983 GCGTTTTGAGAATCCTACGAATCA 59.671 41.667 0.00 0.00 35.22 2.57
231 232 5.163893 GCGTTTTGAGAATCCTACGAATCAA 60.164 40.000 0.00 0.00 35.22 2.57
232 233 6.470160 CGTTTTGAGAATCCTACGAATCAAG 58.530 40.000 0.00 0.00 35.22 3.02
233 234 6.455646 CGTTTTGAGAATCCTACGAATCAAGG 60.456 42.308 0.00 0.00 35.22 3.61
234 235 5.932619 TTGAGAATCCTACGAATCAAGGA 57.067 39.130 4.10 4.10 45.76 3.36
235 236 5.521906 TGAGAATCCTACGAATCAAGGAG 57.478 43.478 7.32 0.00 44.92 3.69
236 237 4.342378 TGAGAATCCTACGAATCAAGGAGG 59.658 45.833 7.32 0.00 44.92 4.30
237 238 3.643792 AGAATCCTACGAATCAAGGAGGG 59.356 47.826 7.32 0.00 44.92 4.30
238 239 1.120530 TCCTACGAATCAAGGAGGGC 58.879 55.000 0.00 0.00 36.97 5.19
239 240 0.106894 CCTACGAATCAAGGAGGGCC 59.893 60.000 0.00 0.00 34.58 5.80
259 260 4.569015 GGCCTTAAGGTCCTAAATGGTTGA 60.569 45.833 22.55 0.00 37.57 3.18
262 263 6.831868 GCCTTAAGGTCCTAAATGGTTGATTA 59.168 38.462 22.55 0.00 37.57 1.75
319 320 4.452455 AGTTCCTTTGTTTCGATGCTACTG 59.548 41.667 0.00 0.00 0.00 2.74
323 407 5.049680 TCCTTTGTTTCGATGCTACTGTTTC 60.050 40.000 0.00 0.00 0.00 2.78
375 459 3.076621 TGGCTTATGAACTTGTGCTGAG 58.923 45.455 0.00 0.00 0.00 3.35
377 461 2.485426 GCTTATGAACTTGTGCTGAGCA 59.515 45.455 1.40 1.40 35.60 4.26
378 462 3.425892 GCTTATGAACTTGTGCTGAGCAG 60.426 47.826 7.71 0.00 40.08 4.24
406 490 2.531522 AACATGTTTCCTTTGCTGCC 57.468 45.000 4.92 0.00 0.00 4.85
468 553 2.875672 GCAGCACCACACCTTTCTGATA 60.876 50.000 0.00 0.00 0.00 2.15
489 574 1.795170 ATGAACACCAACACGCAGGC 61.795 55.000 0.00 0.00 0.00 4.85
490 575 2.439338 AACACCAACACGCAGGCA 60.439 55.556 0.00 0.00 0.00 4.75
491 576 1.795170 GAACACCAACACGCAGGCAT 61.795 55.000 0.00 0.00 0.00 4.40
492 577 2.074230 AACACCAACACGCAGGCATG 62.074 55.000 0.00 0.00 0.00 4.06
545 630 6.366877 GTCCAAAACTCGCAGTGTAATAAGTA 59.633 38.462 0.00 0.00 32.25 2.24
546 631 6.366877 TCCAAAACTCGCAGTGTAATAAGTAC 59.633 38.462 0.00 0.00 32.25 2.73
548 633 7.543172 CCAAAACTCGCAGTGTAATAAGTACTA 59.457 37.037 0.00 0.00 32.25 1.82
550 635 5.819059 ACTCGCAGTGTAATAAGTACTAGC 58.181 41.667 0.00 0.00 33.46 3.42
551 636 5.356190 ACTCGCAGTGTAATAAGTACTAGCA 59.644 40.000 0.00 0.00 33.46 3.49
552 637 5.817988 TCGCAGTGTAATAAGTACTAGCAG 58.182 41.667 0.00 0.00 33.46 4.24
553 638 4.441415 CGCAGTGTAATAAGTACTAGCAGC 59.559 45.833 0.00 0.00 33.46 5.25
554 639 4.441415 GCAGTGTAATAAGTACTAGCAGCG 59.559 45.833 0.00 0.00 33.46 5.18
555 640 5.579718 CAGTGTAATAAGTACTAGCAGCGT 58.420 41.667 0.00 0.00 33.46 5.07
556 641 5.681982 CAGTGTAATAAGTACTAGCAGCGTC 59.318 44.000 0.00 0.00 33.46 5.19
557 642 4.669728 GTGTAATAAGTACTAGCAGCGTCG 59.330 45.833 0.00 0.00 33.46 5.12
644 734 8.258007 CCTGACCAGTCAACTTATCTTATGTAA 58.742 37.037 1.58 0.00 39.39 2.41
673 764 0.615331 TGCTAGCCCTGTTCTTCTGG 59.385 55.000 13.29 0.00 35.32 3.86
703 794 0.107897 ATATGCGCGGTTCCTTGTGA 60.108 50.000 8.83 0.00 0.00 3.58
814 905 2.358247 TGCGAGGCCGAGGTTTTC 60.358 61.111 0.00 0.00 38.22 2.29
915 1010 4.746309 GCACTGGCCCCATCTGCA 62.746 66.667 0.00 0.00 32.77 4.41
955 1050 1.298667 GCTGCTCTTAAACCCCGGA 59.701 57.895 0.73 0.00 0.00 5.14
1046 1161 4.020617 CCTGCTCTCGGTGGCCAA 62.021 66.667 7.24 0.00 0.00 4.52
1673 1809 3.833645 CCGGATCGGCGACCTGAA 61.834 66.667 12.78 0.00 41.17 3.02
1830 1966 1.688627 GGTCTCCGGAACCTCCAGTAT 60.689 57.143 21.61 0.00 35.91 2.12
2271 2410 3.083997 GGAGTGATGGCGAGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
2327 2466 1.067565 AGTGTGCGTGGTAGTGATCTG 60.068 52.381 0.00 0.00 0.00 2.90
2329 2468 0.389817 GTGCGTGGTAGTGATCTGCA 60.390 55.000 0.00 0.00 0.00 4.41
2330 2469 0.536724 TGCGTGGTAGTGATCTGCAT 59.463 50.000 0.00 0.00 0.00 3.96
2332 2473 2.009774 GCGTGGTAGTGATCTGCATTT 58.990 47.619 0.00 0.00 0.00 2.32
2335 2476 4.651994 CGTGGTAGTGATCTGCATTTTTC 58.348 43.478 0.00 0.00 0.00 2.29
2362 2503 1.787155 CCGAATGAGTATGCGTAGTGC 59.213 52.381 0.00 0.00 46.70 4.40
2366 2507 4.302455 GAATGAGTATGCGTAGTGCTGAT 58.698 43.478 0.00 0.00 46.63 2.90
2371 2512 2.802787 ATGCGTAGTGCTGATAGGAC 57.197 50.000 0.00 0.00 46.63 3.85
2372 2513 0.744874 TGCGTAGTGCTGATAGGACC 59.255 55.000 0.00 0.00 46.63 4.46
2373 2514 0.744874 GCGTAGTGCTGATAGGACCA 59.255 55.000 0.00 0.00 37.25 4.02
2460 2619 3.658709 AGCAGAGTTGTAGAAAGCTGTC 58.341 45.455 0.00 0.00 0.00 3.51
2493 2652 2.036764 GAGCACGGCGGTTTATCAGC 62.037 60.000 13.24 1.84 36.55 4.26
2504 2663 1.326548 GTTTATCAGCCGCCGTAAGTG 59.673 52.381 0.00 0.00 0.00 3.16
2518 2677 2.595386 GTAAGTGCATTTCCAAAGCGG 58.405 47.619 0.00 0.00 0.00 5.52
2525 2684 4.715523 TTCCAAAGCGGCCCCTCG 62.716 66.667 0.00 0.00 33.14 4.63
2535 2694 3.384532 GCCCCTCGGACGTGGTTA 61.385 66.667 11.29 0.00 0.00 2.85
2555 2714 0.668706 CGCAATCTATCGAGGGCCTG 60.669 60.000 12.95 3.26 0.00 4.85
2575 2735 1.806461 TATGGATCCGCCGAGCAGTC 61.806 60.000 7.39 0.00 40.66 3.51
2576 2736 3.532155 GGATCCGCCGAGCAGTCT 61.532 66.667 0.00 0.00 0.00 3.24
2577 2737 2.026879 GATCCGCCGAGCAGTCTC 59.973 66.667 0.00 0.00 35.99 3.36
2586 2746 1.081108 GAGCAGTCTCGACGCACTT 60.081 57.895 13.35 0.00 34.80 3.16
2587 2747 0.664767 GAGCAGTCTCGACGCACTTT 60.665 55.000 13.35 0.00 34.80 2.66
2588 2748 0.664767 AGCAGTCTCGACGCACTTTC 60.665 55.000 13.35 0.00 34.80 2.62
2593 2753 3.001330 CAGTCTCGACGCACTTTCTTTTT 59.999 43.478 0.00 0.00 36.20 1.94
2631 2791 3.487120 ACTAGAAGTTTTGCGGGAGTT 57.513 42.857 0.00 0.00 0.00 3.01
2634 2794 0.237498 GAAGTTTTGCGGGAGTTCGG 59.763 55.000 0.00 0.00 0.00 4.30
2636 2796 0.883370 AGTTTTGCGGGAGTTCGGAC 60.883 55.000 0.00 0.00 0.00 4.79
2638 2798 0.464013 TTTTGCGGGAGTTCGGACAA 60.464 50.000 0.00 0.00 0.00 3.18
2639 2799 0.250553 TTTGCGGGAGTTCGGACAAT 60.251 50.000 0.00 0.00 0.00 2.71
2647 2807 2.163010 GGAGTTCGGACAATAGACACGA 59.837 50.000 0.00 0.00 0.00 4.35
2648 2808 3.181489 GGAGTTCGGACAATAGACACGAT 60.181 47.826 0.00 0.00 33.26 3.73
2649 2809 4.036027 GGAGTTCGGACAATAGACACGATA 59.964 45.833 0.00 0.00 33.26 2.92
2650 2810 5.171147 AGTTCGGACAATAGACACGATAG 57.829 43.478 0.00 0.00 46.19 2.08
2651 2811 4.880120 AGTTCGGACAATAGACACGATAGA 59.120 41.667 0.00 0.00 41.38 1.98
2652 2812 5.356190 AGTTCGGACAATAGACACGATAGAA 59.644 40.000 0.00 0.00 41.38 2.10
2654 2814 6.387041 TCGGACAATAGACACGATAGAATT 57.613 37.500 0.00 0.00 41.38 2.17
2655 2815 6.436261 TCGGACAATAGACACGATAGAATTC 58.564 40.000 0.00 0.00 41.38 2.17
2656 2816 5.339875 CGGACAATAGACACGATAGAATTCG 59.660 44.000 0.00 0.00 44.56 3.34
2657 2817 6.436261 GGACAATAGACACGATAGAATTCGA 58.564 40.000 0.00 0.00 41.62 3.71
2658 2818 6.916387 GGACAATAGACACGATAGAATTCGAA 59.084 38.462 0.00 0.00 41.62 3.71
2659 2819 7.096558 GGACAATAGACACGATAGAATTCGAAC 60.097 40.741 0.00 0.00 41.62 3.95
2660 2820 7.481642 ACAATAGACACGATAGAATTCGAACT 58.518 34.615 0.00 0.00 41.62 3.01
2661 2821 7.644551 ACAATAGACACGATAGAATTCGAACTC 59.355 37.037 0.00 0.00 41.62 3.01
2662 2822 4.922719 AGACACGATAGAATTCGAACTCC 58.077 43.478 2.44 0.00 41.62 3.85
2663 2823 4.641094 AGACACGATAGAATTCGAACTCCT 59.359 41.667 2.44 2.26 41.62 3.69
2664 2824 4.922719 ACACGATAGAATTCGAACTCCTC 58.077 43.478 2.44 0.14 41.62 3.71
2665 2825 3.969352 CACGATAGAATTCGAACTCCTCG 59.031 47.826 20.63 20.63 44.65 4.63
2674 2834 2.591915 GAACTCCTCGATCCACCCA 58.408 57.895 0.00 0.00 0.00 4.51
2675 2835 0.461961 GAACTCCTCGATCCACCCAG 59.538 60.000 0.00 0.00 0.00 4.45
2676 2836 0.041238 AACTCCTCGATCCACCCAGA 59.959 55.000 0.00 0.00 0.00 3.86
2677 2837 0.041238 ACTCCTCGATCCACCCAGAA 59.959 55.000 0.00 0.00 0.00 3.02
2678 2838 0.461961 CTCCTCGATCCACCCAGAAC 59.538 60.000 0.00 0.00 0.00 3.01
2679 2839 0.976073 TCCTCGATCCACCCAGAACC 60.976 60.000 0.00 0.00 0.00 3.62
2680 2840 1.522569 CTCGATCCACCCAGAACCC 59.477 63.158 0.00 0.00 0.00 4.11
2681 2841 1.972660 CTCGATCCACCCAGAACCCC 61.973 65.000 0.00 0.00 0.00 4.95
2682 2842 1.995626 CGATCCACCCAGAACCCCT 60.996 63.158 0.00 0.00 0.00 4.79
2683 2843 1.915983 GATCCACCCAGAACCCCTC 59.084 63.158 0.00 0.00 0.00 4.30
2684 2844 1.619669 ATCCACCCAGAACCCCTCC 60.620 63.158 0.00 0.00 0.00 4.30
2685 2845 2.138236 ATCCACCCAGAACCCCTCCT 62.138 60.000 0.00 0.00 0.00 3.69
2686 2846 2.606587 CCACCCAGAACCCCTCCTG 61.607 68.421 0.00 0.00 0.00 3.86
2703 2863 3.845259 GGACCGTGCGCCTCCATA 61.845 66.667 4.18 0.00 0.00 2.74
2704 2864 2.585247 GACCGTGCGCCTCCATAC 60.585 66.667 4.18 0.00 0.00 2.39
2743 2907 0.171455 CTTGTCTTCGCTACCGCTCT 59.829 55.000 0.00 0.00 0.00 4.09
2745 2909 1.676746 TGTCTTCGCTACCGCTCTAT 58.323 50.000 0.00 0.00 0.00 1.98
2748 2912 1.602851 TCTTCGCTACCGCTCTATCAC 59.397 52.381 0.00 0.00 0.00 3.06
2752 2916 1.113517 GCTACCGCTCTATCACCCCA 61.114 60.000 0.00 0.00 0.00 4.96
2755 2919 2.136878 CCGCTCTATCACCCCAGCT 61.137 63.158 0.00 0.00 0.00 4.24
2760 2924 0.339859 TCTATCACCCCAGCTGTCCT 59.660 55.000 13.81 0.00 0.00 3.85
2762 2932 0.252696 TATCACCCCAGCTGTCCTGT 60.253 55.000 13.81 0.79 40.06 4.00
2771 2941 2.818169 GCTGTCCTGTCACACCCCA 61.818 63.158 0.00 0.00 0.00 4.96
2772 2942 1.836391 CTGTCCTGTCACACCCCAA 59.164 57.895 0.00 0.00 0.00 4.12
2782 2956 2.073716 ACACCCCAACCGGAACTCA 61.074 57.895 9.46 0.00 0.00 3.41
2793 2967 1.269621 CCGGAACTCAACGAGTCTGTT 60.270 52.381 0.00 0.00 42.59 3.16
2817 2991 3.306919 CCTTTAACGGTACACTTGGGCTA 60.307 47.826 0.00 0.00 0.00 3.93
2820 2994 0.606604 ACGGTACACTTGGGCTACAG 59.393 55.000 0.00 0.00 0.00 2.74
2860 3034 2.037527 ACACCTCTCCTCCGACCC 59.962 66.667 0.00 0.00 0.00 4.46
2861 3035 2.037367 CACCTCTCCTCCGACCCA 59.963 66.667 0.00 0.00 0.00 4.51
2862 3036 2.055042 CACCTCTCCTCCGACCCAG 61.055 68.421 0.00 0.00 0.00 4.45
2863 3037 2.360980 CCTCTCCTCCGACCCAGT 59.639 66.667 0.00 0.00 0.00 4.00
2864 3038 2.055042 CCTCTCCTCCGACCCAGTG 61.055 68.421 0.00 0.00 0.00 3.66
2920 3094 3.744660 CCCCCTATGCTCTCACAAATAC 58.255 50.000 0.00 0.00 0.00 1.89
2921 3095 3.136443 CCCCCTATGCTCTCACAAATACA 59.864 47.826 0.00 0.00 0.00 2.29
2922 3096 4.202503 CCCCCTATGCTCTCACAAATACAT 60.203 45.833 0.00 0.00 0.00 2.29
2923 3097 4.999950 CCCCTATGCTCTCACAAATACATC 59.000 45.833 0.00 0.00 0.00 3.06
2924 3098 5.221803 CCCCTATGCTCTCACAAATACATCT 60.222 44.000 0.00 0.00 0.00 2.90
2925 3099 6.014242 CCCCTATGCTCTCACAAATACATCTA 60.014 42.308 0.00 0.00 0.00 1.98
2926 3100 7.310921 CCCCTATGCTCTCACAAATACATCTAT 60.311 40.741 0.00 0.00 0.00 1.98
2927 3101 8.753133 CCCTATGCTCTCACAAATACATCTATA 58.247 37.037 0.00 0.00 0.00 1.31
2954 3128 9.567776 TGTACTCCTAATTTTTCATTTGTCAGA 57.432 29.630 0.00 0.00 0.00 3.27
2955 3129 9.827411 GTACTCCTAATTTTTCATTTGTCAGAC 57.173 33.333 0.00 0.00 0.00 3.51
2956 3130 8.463930 ACTCCTAATTTTTCATTTGTCAGACA 57.536 30.769 0.00 0.00 0.00 3.41
2957 3131 8.912988 ACTCCTAATTTTTCATTTGTCAGACAA 58.087 29.630 12.24 12.24 36.11 3.18
2970 3144 7.817418 TTTGTCAGACAAAATTAGCTAGGTT 57.183 32.000 23.82 0.00 44.23 3.50
2971 3145 7.817418 TTGTCAGACAAAATTAGCTAGGTTT 57.183 32.000 13.90 0.00 34.76 3.27
2972 3146 8.911918 TTGTCAGACAAAATTAGCTAGGTTTA 57.088 30.769 13.90 0.00 34.76 2.01
2973 3147 8.547967 TGTCAGACAAAATTAGCTAGGTTTAG 57.452 34.615 0.00 4.11 0.00 1.85
2974 3148 8.372459 TGTCAGACAAAATTAGCTAGGTTTAGA 58.628 33.333 0.00 1.25 0.00 2.10
2975 3149 9.384764 GTCAGACAAAATTAGCTAGGTTTAGAT 57.615 33.333 0.00 0.00 0.00 1.98
2976 3150 9.383519 TCAGACAAAATTAGCTAGGTTTAGATG 57.616 33.333 0.00 0.00 0.00 2.90
2977 3151 9.383519 CAGACAAAATTAGCTAGGTTTAGATGA 57.616 33.333 0.00 0.00 0.00 2.92
2983 3157 7.751768 ATTAGCTAGGTTTAGATGATTTGGC 57.248 36.000 0.00 0.00 0.00 4.52
2984 3158 4.464947 AGCTAGGTTTAGATGATTTGGCC 58.535 43.478 0.00 0.00 0.00 5.36
2985 3159 3.570125 GCTAGGTTTAGATGATTTGGCCC 59.430 47.826 0.00 0.00 0.00 5.80
2986 3160 3.032265 AGGTTTAGATGATTTGGCCCC 57.968 47.619 0.00 0.00 0.00 5.80
2987 3161 2.587307 AGGTTTAGATGATTTGGCCCCT 59.413 45.455 0.00 0.00 0.00 4.79
2988 3162 2.959030 GGTTTAGATGATTTGGCCCCTC 59.041 50.000 0.00 0.00 0.00 4.30
2989 3163 3.373110 GGTTTAGATGATTTGGCCCCTCT 60.373 47.826 0.00 0.00 0.00 3.69
2990 3164 4.141251 GGTTTAGATGATTTGGCCCCTCTA 60.141 45.833 0.00 0.00 0.00 2.43
2991 3165 5.445964 GTTTAGATGATTTGGCCCCTCTAA 58.554 41.667 0.00 0.28 0.00 2.10
2992 3166 3.584733 AGATGATTTGGCCCCTCTAAC 57.415 47.619 0.00 0.00 0.00 2.34
2993 3167 2.852449 AGATGATTTGGCCCCTCTAACA 59.148 45.455 0.00 0.00 0.00 2.41
2994 3168 3.464833 AGATGATTTGGCCCCTCTAACAT 59.535 43.478 0.00 0.00 0.00 2.71
2995 3169 4.665009 AGATGATTTGGCCCCTCTAACATA 59.335 41.667 0.00 0.00 0.00 2.29
2996 3170 5.314306 AGATGATTTGGCCCCTCTAACATAT 59.686 40.000 0.00 0.00 0.00 1.78
2997 3171 6.505344 AGATGATTTGGCCCCTCTAACATATA 59.495 38.462 0.00 0.00 0.00 0.86
2998 3172 6.718593 TGATTTGGCCCCTCTAACATATAT 57.281 37.500 0.00 0.00 0.00 0.86
2999 3173 6.484288 TGATTTGGCCCCTCTAACATATATG 58.516 40.000 11.29 11.29 0.00 1.78
3000 3174 6.274436 TGATTTGGCCCCTCTAACATATATGA 59.726 38.462 19.63 0.00 0.00 2.15
3001 3175 5.499004 TTGGCCCCTCTAACATATATGAC 57.501 43.478 19.63 0.00 0.00 3.06
3002 3176 4.498493 TGGCCCCTCTAACATATATGACA 58.502 43.478 19.63 5.42 0.00 3.58
3003 3177 5.100811 TGGCCCCTCTAACATATATGACAT 58.899 41.667 19.63 7.54 0.00 3.06
3004 3178 5.045651 TGGCCCCTCTAACATATATGACATG 60.046 44.000 19.63 6.58 0.00 3.21
3005 3179 5.045578 GGCCCCTCTAACATATATGACATGT 60.046 44.000 19.63 0.00 38.25 3.21
3006 3180 6.476378 GCCCCTCTAACATATATGACATGTT 58.524 40.000 19.63 7.80 45.90 2.71
3007 3181 6.942576 GCCCCTCTAACATATATGACATGTTT 59.057 38.462 19.63 4.66 42.52 2.83
3008 3182 8.100791 GCCCCTCTAACATATATGACATGTTTA 58.899 37.037 19.63 5.55 42.52 2.01
3009 3183 9.658799 CCCCTCTAACATATATGACATGTTTAG 57.341 37.037 19.63 13.98 42.52 1.85
3010 3184 9.155975 CCCTCTAACATATATGACATGTTTAGC 57.844 37.037 19.63 0.00 42.52 3.09
3011 3185 9.155975 CCTCTAACATATATGACATGTTTAGCC 57.844 37.037 19.63 0.00 42.52 3.93
3012 3186 9.155975 CTCTAACATATATGACATGTTTAGCCC 57.844 37.037 19.63 0.00 42.52 5.19
3013 3187 8.100791 TCTAACATATATGACATGTTTAGCCCC 58.899 37.037 19.63 0.00 42.52 5.80
3014 3188 5.570320 ACATATATGACATGTTTAGCCCCC 58.430 41.667 19.63 0.00 32.72 5.40
3015 3189 5.313240 ACATATATGACATGTTTAGCCCCCT 59.687 40.000 19.63 0.00 32.72 4.79
3016 3190 2.736670 ATGACATGTTTAGCCCCCTC 57.263 50.000 0.00 0.00 0.00 4.30
3017 3191 1.668826 TGACATGTTTAGCCCCCTCT 58.331 50.000 0.00 0.00 0.00 3.69
3018 3192 2.840511 TGACATGTTTAGCCCCCTCTA 58.159 47.619 0.00 0.00 0.00 2.43
3019 3193 3.393687 TGACATGTTTAGCCCCCTCTAT 58.606 45.455 0.00 0.00 0.00 1.98
3020 3194 4.562767 TGACATGTTTAGCCCCCTCTATA 58.437 43.478 0.00 0.00 0.00 1.31
3021 3195 5.162637 TGACATGTTTAGCCCCCTCTATAT 58.837 41.667 0.00 0.00 0.00 0.86
3022 3196 5.610982 TGACATGTTTAGCCCCCTCTATATT 59.389 40.000 0.00 0.00 0.00 1.28
3023 3197 6.128138 ACATGTTTAGCCCCCTCTATATTC 57.872 41.667 0.00 0.00 0.00 1.75
3024 3198 5.610982 ACATGTTTAGCCCCCTCTATATTCA 59.389 40.000 0.00 0.00 0.00 2.57
3025 3199 5.825593 TGTTTAGCCCCCTCTATATTCAG 57.174 43.478 0.00 0.00 0.00 3.02
3026 3200 5.224441 TGTTTAGCCCCCTCTATATTCAGT 58.776 41.667 0.00 0.00 0.00 3.41
3027 3201 5.670361 TGTTTAGCCCCCTCTATATTCAGTT 59.330 40.000 0.00 0.00 0.00 3.16
3028 3202 6.159751 TGTTTAGCCCCCTCTATATTCAGTTT 59.840 38.462 0.00 0.00 0.00 2.66
3029 3203 4.984146 AGCCCCCTCTATATTCAGTTTC 57.016 45.455 0.00 0.00 0.00 2.78
3030 3204 4.571951 AGCCCCCTCTATATTCAGTTTCT 58.428 43.478 0.00 0.00 0.00 2.52
3031 3205 4.349342 AGCCCCCTCTATATTCAGTTTCTG 59.651 45.833 0.00 0.00 0.00 3.02
3032 3206 4.505742 GCCCCCTCTATATTCAGTTTCTGG 60.506 50.000 0.00 0.00 31.51 3.86
3033 3207 4.505742 CCCCCTCTATATTCAGTTTCTGGC 60.506 50.000 0.00 0.00 31.51 4.85
3034 3208 4.349342 CCCCTCTATATTCAGTTTCTGGCT 59.651 45.833 0.00 0.00 31.51 4.75
3035 3209 5.512232 CCCCTCTATATTCAGTTTCTGGCTC 60.512 48.000 0.00 0.00 31.51 4.70
3036 3210 5.512232 CCCTCTATATTCAGTTTCTGGCTCC 60.512 48.000 0.00 0.00 31.51 4.70
3037 3211 5.201713 TCTATATTCAGTTTCTGGCTCCG 57.798 43.478 0.00 0.00 31.51 4.63
3038 3212 2.024176 TATTCAGTTTCTGGCTCCGC 57.976 50.000 0.00 0.00 31.51 5.54
3070 3244 3.672447 TCGCGCAGGTACCGTCAA 61.672 61.111 8.75 0.00 0.00 3.18
3092 3269 1.672854 CCGATACTCACCTTGCCCGA 61.673 60.000 0.00 0.00 0.00 5.14
3147 3324 2.036992 TGTTTGGATTGGTGTTGATGGC 59.963 45.455 0.00 0.00 0.00 4.40
3149 3326 1.548081 TGGATTGGTGTTGATGGCTG 58.452 50.000 0.00 0.00 0.00 4.85
3150 3327 0.819582 GGATTGGTGTTGATGGCTGG 59.180 55.000 0.00 0.00 0.00 4.85
3151 3328 1.549203 GATTGGTGTTGATGGCTGGT 58.451 50.000 0.00 0.00 0.00 4.00
3152 3329 1.895131 GATTGGTGTTGATGGCTGGTT 59.105 47.619 0.00 0.00 0.00 3.67
3153 3330 1.786937 TTGGTGTTGATGGCTGGTTT 58.213 45.000 0.00 0.00 0.00 3.27
3154 3331 1.039068 TGGTGTTGATGGCTGGTTTG 58.961 50.000 0.00 0.00 0.00 2.93
3155 3332 0.318120 GGTGTTGATGGCTGGTTTGG 59.682 55.000 0.00 0.00 0.00 3.28
3156 3333 1.327303 GTGTTGATGGCTGGTTTGGA 58.673 50.000 0.00 0.00 0.00 3.53
3157 3334 1.895131 GTGTTGATGGCTGGTTTGGAT 59.105 47.619 0.00 0.00 0.00 3.41
3158 3335 2.299867 GTGTTGATGGCTGGTTTGGATT 59.700 45.455 0.00 0.00 0.00 3.01
3159 3336 2.299582 TGTTGATGGCTGGTTTGGATTG 59.700 45.455 0.00 0.00 0.00 2.67
3160 3337 1.559368 TGATGGCTGGTTTGGATTGG 58.441 50.000 0.00 0.00 0.00 3.16
3161 3338 1.203162 TGATGGCTGGTTTGGATTGGT 60.203 47.619 0.00 0.00 0.00 3.67
3162 3339 1.205417 GATGGCTGGTTTGGATTGGTG 59.795 52.381 0.00 0.00 0.00 4.17
3163 3340 0.105760 TGGCTGGTTTGGATTGGTGT 60.106 50.000 0.00 0.00 0.00 4.16
3164 3341 1.047801 GGCTGGTTTGGATTGGTGTT 58.952 50.000 0.00 0.00 0.00 3.32
3165 3342 1.270252 GGCTGGTTTGGATTGGTGTTG 60.270 52.381 0.00 0.00 0.00 3.33
3166 3343 1.686052 GCTGGTTTGGATTGGTGTTGA 59.314 47.619 0.00 0.00 0.00 3.18
3167 3344 2.299867 GCTGGTTTGGATTGGTGTTGAT 59.700 45.455 0.00 0.00 0.00 2.57
3168 3345 3.861886 GCTGGTTTGGATTGGTGTTGATG 60.862 47.826 0.00 0.00 0.00 3.07
3169 3346 2.632028 TGGTTTGGATTGGTGTTGATGG 59.368 45.455 0.00 0.00 0.00 3.51
3170 3347 2.612721 GGTTTGGATTGGTGTTGATGGC 60.613 50.000 0.00 0.00 0.00 4.40
3175 3352 0.251922 ATTGGTGTTGATGGCTGCCT 60.252 50.000 21.03 5.22 0.00 4.75
3177 3354 2.345760 GGTGTTGATGGCTGCCTGG 61.346 63.158 21.03 0.00 0.00 4.45
3254 3432 2.202946 GCTCGCCCAAGACTAGCC 60.203 66.667 0.00 0.00 0.00 3.93
3277 3455 3.031812 GCTTTAGCATTCAATTCGCGAG 58.968 45.455 9.59 0.00 41.59 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.699410 ATAGGATTCAACCATATTGAAAGTTGA 57.301 29.630 6.20 0.54 44.99 3.18
68 69 8.411683 AGTGGATGCTAGATTTTCAATGAAATC 58.588 33.333 9.41 9.09 43.24 2.17
69 70 8.302515 AGTGGATGCTAGATTTTCAATGAAAT 57.697 30.769 9.41 0.22 31.34 2.17
70 71 7.148018 GGAGTGGATGCTAGATTTTCAATGAAA 60.148 37.037 4.03 4.03 0.00 2.69
71 72 6.319658 GGAGTGGATGCTAGATTTTCAATGAA 59.680 38.462 0.00 0.00 0.00 2.57
72 73 5.824624 GGAGTGGATGCTAGATTTTCAATGA 59.175 40.000 0.00 0.00 0.00 2.57
73 74 5.591472 TGGAGTGGATGCTAGATTTTCAATG 59.409 40.000 0.00 0.00 0.00 2.82
74 75 5.759059 TGGAGTGGATGCTAGATTTTCAAT 58.241 37.500 0.00 0.00 0.00 2.57
75 76 5.178096 TGGAGTGGATGCTAGATTTTCAA 57.822 39.130 0.00 0.00 0.00 2.69
76 77 4.842531 TGGAGTGGATGCTAGATTTTCA 57.157 40.909 0.00 0.00 0.00 2.69
77 78 4.336713 GGTTGGAGTGGATGCTAGATTTTC 59.663 45.833 0.00 0.00 0.00 2.29
78 79 4.018050 AGGTTGGAGTGGATGCTAGATTTT 60.018 41.667 0.00 0.00 0.00 1.82
79 80 3.525199 AGGTTGGAGTGGATGCTAGATTT 59.475 43.478 0.00 0.00 0.00 2.17
80 81 3.118531 AGGTTGGAGTGGATGCTAGATT 58.881 45.455 0.00 0.00 0.00 2.40
81 82 2.703007 GAGGTTGGAGTGGATGCTAGAT 59.297 50.000 0.00 0.00 0.00 1.98
82 83 2.111384 GAGGTTGGAGTGGATGCTAGA 58.889 52.381 0.00 0.00 0.00 2.43
83 84 2.114616 AGAGGTTGGAGTGGATGCTAG 58.885 52.381 0.00 0.00 0.00 3.42
84 85 2.254152 AGAGGTTGGAGTGGATGCTA 57.746 50.000 0.00 0.00 0.00 3.49
85 86 1.366319 AAGAGGTTGGAGTGGATGCT 58.634 50.000 0.00 0.00 0.00 3.79
86 87 2.206576 AAAGAGGTTGGAGTGGATGC 57.793 50.000 0.00 0.00 0.00 3.91
104 105 5.639931 CGGGAAAAACAAAGGAAGTGAAAAA 59.360 36.000 0.00 0.00 0.00 1.94
105 106 5.172205 CGGGAAAAACAAAGGAAGTGAAAA 58.828 37.500 0.00 0.00 0.00 2.29
106 107 4.221041 ACGGGAAAAACAAAGGAAGTGAAA 59.779 37.500 0.00 0.00 0.00 2.69
107 108 3.764972 ACGGGAAAAACAAAGGAAGTGAA 59.235 39.130 0.00 0.00 0.00 3.18
108 109 3.129638 CACGGGAAAAACAAAGGAAGTGA 59.870 43.478 0.00 0.00 0.00 3.41
109 110 3.443976 CACGGGAAAAACAAAGGAAGTG 58.556 45.455 0.00 0.00 0.00 3.16
110 111 2.429250 CCACGGGAAAAACAAAGGAAGT 59.571 45.455 0.00 0.00 0.00 3.01
111 112 2.801699 GCCACGGGAAAAACAAAGGAAG 60.802 50.000 0.00 0.00 0.00 3.46
112 113 1.137282 GCCACGGGAAAAACAAAGGAA 59.863 47.619 0.00 0.00 0.00 3.36
113 114 0.747852 GCCACGGGAAAAACAAAGGA 59.252 50.000 0.00 0.00 0.00 3.36
114 115 0.461961 TGCCACGGGAAAAACAAAGG 59.538 50.000 0.00 0.00 0.00 3.11
115 116 2.524569 ATGCCACGGGAAAAACAAAG 57.475 45.000 0.00 0.00 0.00 2.77
116 117 2.990066 AATGCCACGGGAAAAACAAA 57.010 40.000 0.00 0.00 0.00 2.83
117 118 4.120589 GTTTAATGCCACGGGAAAAACAA 58.879 39.130 11.54 0.00 31.14 2.83
118 119 3.132289 TGTTTAATGCCACGGGAAAAACA 59.868 39.130 13.85 13.85 35.12 2.83
119 120 3.491639 GTGTTTAATGCCACGGGAAAAAC 59.508 43.478 10.22 10.22 0.00 2.43
120 121 3.492829 GGTGTTTAATGCCACGGGAAAAA 60.493 43.478 0.00 0.00 32.30 1.94
121 122 2.036089 GGTGTTTAATGCCACGGGAAAA 59.964 45.455 0.00 0.00 32.30 2.29
122 123 1.614413 GGTGTTTAATGCCACGGGAAA 59.386 47.619 0.00 0.00 32.30 3.13
123 124 1.249407 GGTGTTTAATGCCACGGGAA 58.751 50.000 0.00 0.00 32.30 3.97
124 125 0.609681 GGGTGTTTAATGCCACGGGA 60.610 55.000 0.00 0.00 32.30 5.14
125 126 0.610785 AGGGTGTTTAATGCCACGGG 60.611 55.000 0.00 0.00 32.30 5.28
126 127 0.525761 CAGGGTGTTTAATGCCACGG 59.474 55.000 0.00 0.00 32.30 4.94
127 128 1.068610 CACAGGGTGTTTAATGCCACG 60.069 52.381 0.00 0.00 32.30 4.94
128 129 1.336795 GCACAGGGTGTTTAATGCCAC 60.337 52.381 0.00 0.00 35.75 5.01
129 130 0.965439 GCACAGGGTGTTTAATGCCA 59.035 50.000 0.00 0.00 35.75 4.92
130 131 1.256812 AGCACAGGGTGTTTAATGCC 58.743 50.000 0.00 0.00 35.75 4.40
131 132 4.718940 ATTAGCACAGGGTGTTTAATGC 57.281 40.909 0.00 0.00 35.75 3.56
132 133 6.515272 AGAATTAGCACAGGGTGTTTAATG 57.485 37.500 0.00 0.00 35.75 1.90
133 134 7.285401 CCATAGAATTAGCACAGGGTGTTTAAT 59.715 37.037 0.00 1.53 35.75 1.40
134 135 6.601613 CCATAGAATTAGCACAGGGTGTTTAA 59.398 38.462 0.00 0.00 35.75 1.52
135 136 6.119536 CCATAGAATTAGCACAGGGTGTTTA 58.880 40.000 0.00 0.00 35.75 2.01
136 137 4.949856 CCATAGAATTAGCACAGGGTGTTT 59.050 41.667 0.00 0.00 35.75 2.83
137 138 4.526970 CCATAGAATTAGCACAGGGTGTT 58.473 43.478 0.00 0.00 35.75 3.32
138 139 3.117888 CCCATAGAATTAGCACAGGGTGT 60.118 47.826 0.00 0.00 35.75 4.16
139 140 3.136443 TCCCATAGAATTAGCACAGGGTG 59.864 47.826 0.00 0.00 36.45 4.61
140 141 3.393687 TCCCATAGAATTAGCACAGGGT 58.606 45.455 0.00 0.00 36.45 4.34
141 142 4.647564 ATCCCATAGAATTAGCACAGGG 57.352 45.455 0.00 0.00 36.38 4.45
142 143 5.624159 TGAATCCCATAGAATTAGCACAGG 58.376 41.667 0.00 0.00 0.00 4.00
143 144 6.769822 ACTTGAATCCCATAGAATTAGCACAG 59.230 38.462 0.00 0.00 0.00 3.66
144 145 6.543465 CACTTGAATCCCATAGAATTAGCACA 59.457 38.462 0.00 0.00 0.00 4.57
145 146 6.016777 CCACTTGAATCCCATAGAATTAGCAC 60.017 42.308 0.00 0.00 0.00 4.40
146 147 6.064060 CCACTTGAATCCCATAGAATTAGCA 58.936 40.000 0.00 0.00 0.00 3.49
147 148 5.474876 CCCACTTGAATCCCATAGAATTAGC 59.525 44.000 0.00 0.00 0.00 3.09
148 149 5.474876 GCCCACTTGAATCCCATAGAATTAG 59.525 44.000 0.00 0.00 0.00 1.73
149 150 5.103728 TGCCCACTTGAATCCCATAGAATTA 60.104 40.000 0.00 0.00 0.00 1.40
150 151 4.218312 GCCCACTTGAATCCCATAGAATT 58.782 43.478 0.00 0.00 0.00 2.17
151 152 3.205056 TGCCCACTTGAATCCCATAGAAT 59.795 43.478 0.00 0.00 0.00 2.40
152 153 2.580322 TGCCCACTTGAATCCCATAGAA 59.420 45.455 0.00 0.00 0.00 2.10
153 154 2.204463 TGCCCACTTGAATCCCATAGA 58.796 47.619 0.00 0.00 0.00 1.98
154 155 2.734755 TGCCCACTTGAATCCCATAG 57.265 50.000 0.00 0.00 0.00 2.23
155 156 3.298619 CAATGCCCACTTGAATCCCATA 58.701 45.455 0.00 0.00 0.00 2.74
156 157 2.112998 CAATGCCCACTTGAATCCCAT 58.887 47.619 0.00 0.00 0.00 4.00
157 158 1.559368 CAATGCCCACTTGAATCCCA 58.441 50.000 0.00 0.00 0.00 4.37
158 159 0.176449 GCAATGCCCACTTGAATCCC 59.824 55.000 0.00 0.00 0.00 3.85
159 160 0.176449 GGCAATGCCCACTTGAATCC 59.824 55.000 14.47 0.00 44.06 3.01
160 161 3.746900 GGCAATGCCCACTTGAATC 57.253 52.632 14.47 0.00 44.06 2.52
171 172 3.323751 AAAAGATTGGAGTGGCAATGC 57.676 42.857 0.00 0.00 0.00 3.56
172 173 7.910441 AAAATAAAAGATTGGAGTGGCAATG 57.090 32.000 0.00 0.00 0.00 2.82
194 195 6.062434 TCTCAAAACGCGGAAATAGAAAAA 57.938 33.333 12.47 0.00 0.00 1.94
195 196 5.676532 TCTCAAAACGCGGAAATAGAAAA 57.323 34.783 12.47 0.00 0.00 2.29
196 197 5.676532 TTCTCAAAACGCGGAAATAGAAA 57.323 34.783 12.47 0.00 0.00 2.52
197 198 5.163794 GGATTCTCAAAACGCGGAAATAGAA 60.164 40.000 12.47 13.96 0.00 2.10
198 199 4.331717 GGATTCTCAAAACGCGGAAATAGA 59.668 41.667 12.47 4.74 0.00 1.98
199 200 4.332819 AGGATTCTCAAAACGCGGAAATAG 59.667 41.667 12.47 2.02 0.00 1.73
200 201 4.258543 AGGATTCTCAAAACGCGGAAATA 58.741 39.130 12.47 0.00 0.00 1.40
201 202 3.081804 AGGATTCTCAAAACGCGGAAAT 58.918 40.909 12.47 0.00 0.00 2.17
202 203 2.500229 AGGATTCTCAAAACGCGGAAA 58.500 42.857 12.47 0.00 0.00 3.13
203 204 2.178912 AGGATTCTCAAAACGCGGAA 57.821 45.000 12.47 2.96 0.00 4.30
204 205 2.613691 GTAGGATTCTCAAAACGCGGA 58.386 47.619 12.47 0.00 0.00 5.54
205 206 1.323534 CGTAGGATTCTCAAAACGCGG 59.676 52.381 12.47 0.00 0.00 6.46
206 207 2.256174 TCGTAGGATTCTCAAAACGCG 58.744 47.619 3.53 3.53 0.00 6.01
207 208 4.328983 TGATTCGTAGGATTCTCAAAACGC 59.671 41.667 8.35 0.00 0.00 4.84
208 209 6.403333 TTGATTCGTAGGATTCTCAAAACG 57.597 37.500 8.35 0.00 0.00 3.60
209 210 6.594159 TCCTTGATTCGTAGGATTCTCAAAAC 59.406 38.462 8.35 0.00 35.66 2.43
210 211 6.707290 TCCTTGATTCGTAGGATTCTCAAAA 58.293 36.000 8.35 0.00 35.66 2.44
211 212 6.294361 TCCTTGATTCGTAGGATTCTCAAA 57.706 37.500 8.35 0.00 35.66 2.69
212 213 5.163405 CCTCCTTGATTCGTAGGATTCTCAA 60.163 44.000 7.55 6.99 39.72 3.02
213 214 4.342378 CCTCCTTGATTCGTAGGATTCTCA 59.658 45.833 7.55 0.50 39.72 3.27
214 215 4.262249 CCCTCCTTGATTCGTAGGATTCTC 60.262 50.000 7.55 0.00 39.72 2.87
215 216 3.643792 CCCTCCTTGATTCGTAGGATTCT 59.356 47.826 7.55 0.00 39.72 2.40
216 217 3.804063 GCCCTCCTTGATTCGTAGGATTC 60.804 52.174 7.55 1.32 39.72 2.52
217 218 2.104963 GCCCTCCTTGATTCGTAGGATT 59.895 50.000 7.55 0.00 39.72 3.01
218 219 1.694696 GCCCTCCTTGATTCGTAGGAT 59.305 52.381 7.55 0.00 39.72 3.24
219 220 1.120530 GCCCTCCTTGATTCGTAGGA 58.879 55.000 7.03 7.03 38.22 2.94
220 221 0.106894 GGCCCTCCTTGATTCGTAGG 59.893 60.000 0.00 0.00 0.00 3.18
221 222 1.123928 AGGCCCTCCTTGATTCGTAG 58.876 55.000 0.00 0.00 40.66 3.51
222 223 3.317280 AGGCCCTCCTTGATTCGTA 57.683 52.632 0.00 0.00 40.66 3.43
223 224 4.153957 AGGCCCTCCTTGATTCGT 57.846 55.556 0.00 0.00 40.66 3.85
226 227 7.859487 TAGGACCTTAAGGCCCTCCTTGATT 62.859 48.000 30.67 11.91 45.73 2.57
227 228 5.788599 AGGACCTTAAGGCCCTCCTTGAT 62.789 52.174 22.92 0.00 45.73 2.57
228 229 4.537277 AGGACCTTAAGGCCCTCCTTGA 62.537 54.545 22.92 0.00 45.73 3.02
229 230 2.187003 AGGACCTTAAGGCCCTCCTTG 61.187 57.143 22.92 0.00 45.73 3.61
230 231 0.121402 AGGACCTTAAGGCCCTCCTT 59.879 55.000 22.92 1.86 45.73 3.36
231 232 1.024536 TAGGACCTTAAGGCCCTCCT 58.975 55.000 30.67 28.48 45.73 3.69
232 233 1.889174 TTAGGACCTTAAGGCCCTCC 58.111 55.000 30.67 23.76 45.73 4.30
233 234 3.435169 CCATTTAGGACCTTAAGGCCCTC 60.435 52.174 30.67 16.28 45.73 4.30
235 236 2.243994 ACCATTTAGGACCTTAAGGCCC 59.756 50.000 21.92 20.32 41.22 5.80
236 237 3.664551 ACCATTTAGGACCTTAAGGCC 57.335 47.619 21.92 21.41 41.22 5.19
237 238 4.595986 TCAACCATTTAGGACCTTAAGGC 58.404 43.478 21.92 13.69 41.22 4.35
238 239 8.053355 AGTAATCAACCATTTAGGACCTTAAGG 58.947 37.037 20.42 20.42 41.22 2.69
240 241 9.895138 GTAGTAATCAACCATTTAGGACCTTAA 57.105 33.333 0.00 0.00 41.22 1.85
241 242 9.049050 TGTAGTAATCAACCATTTAGGACCTTA 57.951 33.333 0.00 0.00 41.22 2.69
242 243 7.924541 TGTAGTAATCAACCATTTAGGACCTT 58.075 34.615 0.00 0.00 41.22 3.50
243 244 7.504926 TGTAGTAATCAACCATTTAGGACCT 57.495 36.000 0.00 0.00 41.22 3.85
244 245 8.747538 AATGTAGTAATCAACCATTTAGGACC 57.252 34.615 0.00 0.00 41.22 4.46
253 254 9.295825 ACAGAATCAAAATGTAGTAATCAACCA 57.704 29.630 0.00 0.00 0.00 3.67
287 288 5.694910 TCGAAACAAAGGAACTCAGATGTAC 59.305 40.000 0.00 0.00 38.49 2.90
319 320 5.356426 AGCAAACCCAACATTAACAGAAAC 58.644 37.500 0.00 0.00 0.00 2.78
323 407 6.128580 GCAAATAGCAAACCCAACATTAACAG 60.129 38.462 0.00 0.00 44.79 3.16
468 553 1.229428 CTGCGTGTTGGTGTTCATCT 58.771 50.000 0.00 0.00 0.00 2.90
493 578 2.421314 CTGCATGGCATGGCATGG 59.579 61.111 44.47 32.36 39.65 3.66
494 579 1.110518 TACCTGCATGGCATGGCATG 61.111 55.000 42.44 42.44 39.65 4.06
495 580 0.178944 ATACCTGCATGGCATGGCAT 60.179 50.000 27.75 27.75 39.65 4.40
496 581 0.397394 AATACCTGCATGGCATGGCA 60.397 50.000 27.48 25.52 38.13 4.92
497 582 1.270550 GTAATACCTGCATGGCATGGC 59.729 52.381 27.48 19.51 38.13 4.40
498 583 2.816087 GAGTAATACCTGCATGGCATGG 59.184 50.000 27.48 14.62 38.13 3.66
545 630 3.450115 GACCCCGACGCTGCTAGT 61.450 66.667 0.00 0.00 0.00 2.57
546 631 4.208686 GGACCCCGACGCTGCTAG 62.209 72.222 0.00 0.00 0.00 3.42
553 638 2.829458 GAGAGAGGGACCCCGACG 60.829 72.222 7.00 0.00 41.95 5.12
554 639 1.000612 AAGAGAGAGGGACCCCGAC 59.999 63.158 7.00 0.00 41.95 4.79
555 640 1.000486 CAAGAGAGAGGGACCCCGA 60.000 63.158 7.00 0.00 41.95 5.14
556 641 0.033405 TACAAGAGAGAGGGACCCCG 60.033 60.000 7.00 0.00 41.95 5.73
557 642 1.007359 AGTACAAGAGAGAGGGACCCC 59.993 57.143 7.00 1.17 0.00 4.95
673 764 2.024319 GCGCATATGGTCCTCGCTC 61.024 63.158 14.80 0.00 42.19 5.03
703 794 1.748493 AGTGTGGCACGTCATGTTTTT 59.252 42.857 13.77 0.00 39.64 1.94
955 1050 3.119316 TGCGTTTGATGAGTGTGGTTTTT 60.119 39.130 0.00 0.00 0.00 1.94
1056 1177 2.511452 CCTCTCCGCCGGATCCATT 61.511 63.158 6.16 0.00 0.00 3.16
1062 1183 4.816984 GTCTCCCTCTCCGCCGGA 62.817 72.222 5.05 5.37 0.00 5.14
1581 1717 4.218578 AGCTCGCTGATCCGGCTG 62.219 66.667 0.00 0.00 34.86 4.85
1830 1966 2.615240 CGGGTTGTTGTCCATGATCAGA 60.615 50.000 0.09 0.00 0.00 3.27
2028 2164 2.435805 CAGGTGGTATATCCTGTGCAGT 59.564 50.000 11.15 0.00 44.19 4.40
2327 2466 5.059404 TCATTCGGAGGAAAGAAAAATGC 57.941 39.130 0.00 0.00 35.40 3.56
2362 2503 0.911769 TGGGCAGTTGGTCCTATCAG 59.088 55.000 0.00 0.00 43.75 2.90
2366 2507 1.557832 GTACATGGGCAGTTGGTCCTA 59.442 52.381 0.00 0.00 43.75 2.94
2371 2512 1.066430 AGTACGTACATGGGCAGTTGG 60.066 52.381 26.55 0.00 0.00 3.77
2372 2513 2.380084 AGTACGTACATGGGCAGTTG 57.620 50.000 26.55 0.00 0.00 3.16
2373 2514 2.038033 ACAAGTACGTACATGGGCAGTT 59.962 45.455 28.51 10.54 0.00 3.16
2460 2619 2.402572 TGCTCGAGCCTGAGAGTCG 61.403 63.158 33.23 0.00 41.18 4.18
2493 2652 1.302383 TGGAAATGCACTTACGGCGG 61.302 55.000 13.24 0.00 0.00 6.13
2504 2663 2.125552 GGGCCGCTTTGGAAATGC 60.126 61.111 0.00 0.00 42.89 3.56
2518 2677 3.384532 TAACCACGTCCGAGGGGC 61.385 66.667 8.01 0.00 0.00 5.80
2525 2684 4.629231 CGATAGATTGCGTAACCACGTCC 61.629 52.174 0.00 0.00 45.31 4.79
2555 2714 1.373497 CTGCTCGGCGGATCCATAC 60.373 63.158 13.41 0.00 37.02 2.39
2602 2762 5.220777 CCGCAAAACTTCTAGTTTGTCTTGA 60.221 40.000 5.64 0.00 46.78 3.02
2604 2764 4.036380 CCCGCAAAACTTCTAGTTTGTCTT 59.964 41.667 5.64 0.00 46.78 3.01
2608 2768 3.564225 ACTCCCGCAAAACTTCTAGTTTG 59.436 43.478 5.64 0.00 46.78 2.93
2614 2774 1.226746 CGAACTCCCGCAAAACTTCT 58.773 50.000 0.00 0.00 0.00 2.85
2616 2776 0.179040 TCCGAACTCCCGCAAAACTT 60.179 50.000 0.00 0.00 0.00 2.66
2617 2777 0.883370 GTCCGAACTCCCGCAAAACT 60.883 55.000 0.00 0.00 0.00 2.66
2618 2778 1.161563 TGTCCGAACTCCCGCAAAAC 61.162 55.000 0.00 0.00 0.00 2.43
2619 2779 0.464013 TTGTCCGAACTCCCGCAAAA 60.464 50.000 0.00 0.00 0.00 2.44
2631 2791 6.387041 AATTCTATCGTGTCTATTGTCCGA 57.613 37.500 0.00 0.00 0.00 4.55
2634 2794 7.644551 AGTTCGAATTCTATCGTGTCTATTGTC 59.355 37.037 0.00 0.00 43.19 3.18
2636 2796 7.113684 GGAGTTCGAATTCTATCGTGTCTATTG 59.886 40.741 18.64 0.00 43.19 1.90
2638 2798 6.487331 AGGAGTTCGAATTCTATCGTGTCTAT 59.513 38.462 18.64 0.00 43.19 1.98
2639 2799 5.821470 AGGAGTTCGAATTCTATCGTGTCTA 59.179 40.000 18.64 0.00 43.19 2.59
2656 2816 0.461961 CTGGGTGGATCGAGGAGTTC 59.538 60.000 0.00 0.00 0.00 3.01
2657 2817 0.041238 TCTGGGTGGATCGAGGAGTT 59.959 55.000 0.00 0.00 0.00 3.01
2658 2818 0.041238 TTCTGGGTGGATCGAGGAGT 59.959 55.000 0.00 0.00 0.00 3.85
2659 2819 0.461961 GTTCTGGGTGGATCGAGGAG 59.538 60.000 0.00 0.00 0.00 3.69
2660 2820 0.976073 GGTTCTGGGTGGATCGAGGA 60.976 60.000 0.00 0.00 0.00 3.71
2661 2821 1.522569 GGTTCTGGGTGGATCGAGG 59.477 63.158 0.00 0.00 0.00 4.63
2662 2822 1.522569 GGGTTCTGGGTGGATCGAG 59.477 63.158 0.00 0.00 0.00 4.04
2663 2823 1.993391 GGGGTTCTGGGTGGATCGA 60.993 63.158 0.00 0.00 0.00 3.59
2664 2824 1.972660 GAGGGGTTCTGGGTGGATCG 61.973 65.000 0.00 0.00 0.00 3.69
2665 2825 1.636769 GGAGGGGTTCTGGGTGGATC 61.637 65.000 0.00 0.00 0.00 3.36
2666 2826 1.619669 GGAGGGGTTCTGGGTGGAT 60.620 63.158 0.00 0.00 0.00 3.41
2667 2827 2.204090 GGAGGGGTTCTGGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
2668 2828 2.204151 AGGAGGGGTTCTGGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
2669 2829 2.606587 CCAGGAGGGGTTCTGGGTG 61.607 68.421 0.00 0.00 44.99 4.61
2670 2830 2.204151 CCAGGAGGGGTTCTGGGT 60.204 66.667 0.00 0.00 44.99 4.51
2673 2833 2.660064 CGGTCCAGGAGGGGTTCTG 61.660 68.421 0.00 0.00 37.22 3.02
2674 2834 2.284699 CGGTCCAGGAGGGGTTCT 60.285 66.667 0.00 0.00 37.22 3.01
2675 2835 2.606826 ACGGTCCAGGAGGGGTTC 60.607 66.667 0.00 0.00 37.22 3.62
2676 2836 2.928396 CACGGTCCAGGAGGGGTT 60.928 66.667 0.00 0.00 37.22 4.11
2686 2846 3.845259 TATGGAGGCGCACGGTCC 61.845 66.667 10.83 10.11 0.00 4.46
2687 2847 2.585247 GTATGGAGGCGCACGGTC 60.585 66.667 10.83 0.00 0.00 4.79
2735 2895 1.113517 GCTGGGGTGATAGAGCGGTA 61.114 60.000 0.00 0.00 0.00 4.02
2743 2907 0.252696 ACAGGACAGCTGGGGTGATA 60.253 55.000 19.93 0.00 34.87 2.15
2745 2909 2.122413 ACAGGACAGCTGGGGTGA 60.122 61.111 19.93 0.00 34.87 4.02
2748 2912 2.348998 GTGACAGGACAGCTGGGG 59.651 66.667 19.93 6.65 0.00 4.96
2752 2916 2.520536 GGGGTGTGACAGGACAGCT 61.521 63.158 0.00 0.00 42.73 4.24
2755 2919 1.529796 GTTGGGGTGTGACAGGACA 59.470 57.895 0.00 0.00 0.00 4.02
2760 2924 2.376165 TTCCGGTTGGGGTGTGACA 61.376 57.895 0.00 0.00 36.01 3.58
2762 2932 2.047213 GAGTTCCGGTTGGGGTGTGA 62.047 60.000 0.00 0.00 36.01 3.58
2771 2941 1.038280 AGACTCGTTGAGTTCCGGTT 58.962 50.000 0.00 0.00 43.53 4.44
2772 2942 0.314302 CAGACTCGTTGAGTTCCGGT 59.686 55.000 0.00 0.00 43.53 5.28
2782 2956 4.202151 ACCGTTAAAGGTAACAGACTCGTT 60.202 41.667 11.70 0.00 43.89 3.85
2793 2967 3.556843 GCCCAAGTGTACCGTTAAAGGTA 60.557 47.826 15.34 15.34 43.89 3.08
2817 2991 4.070552 GACGGAGAAGCGGCCTGT 62.071 66.667 0.00 0.00 0.00 4.00
2899 3073 3.136443 TGTATTTGTGAGAGCATAGGGGG 59.864 47.826 0.00 0.00 0.00 5.40
2900 3074 4.422073 TGTATTTGTGAGAGCATAGGGG 57.578 45.455 0.00 0.00 0.00 4.79
2901 3075 5.862845 AGATGTATTTGTGAGAGCATAGGG 58.137 41.667 0.00 0.00 0.00 3.53
2928 3102 9.567776 TCTGACAAATGAAAAATTAGGAGTACA 57.432 29.630 0.00 0.00 0.00 2.90
2929 3103 9.827411 GTCTGACAAATGAAAAATTAGGAGTAC 57.173 33.333 2.24 0.00 0.00 2.73
2930 3104 9.567776 TGTCTGACAAATGAAAAATTAGGAGTA 57.432 29.630 8.27 0.00 0.00 2.59
2931 3105 8.463930 TGTCTGACAAATGAAAAATTAGGAGT 57.536 30.769 8.27 0.00 0.00 3.85
2932 3106 9.748708 TTTGTCTGACAAATGAAAAATTAGGAG 57.251 29.630 27.14 0.00 42.55 3.69
2939 3113 9.598517 AGCTAATTTTGTCTGACAAATGAAAAA 57.401 25.926 30.10 17.96 46.17 1.94
2941 3115 9.897744 CTAGCTAATTTTGTCTGACAAATGAAA 57.102 29.630 30.10 18.90 46.17 2.69
2942 3116 8.514594 CCTAGCTAATTTTGTCTGACAAATGAA 58.485 33.333 30.10 19.21 46.17 2.57
2943 3117 7.665559 ACCTAGCTAATTTTGTCTGACAAATGA 59.334 33.333 30.10 19.83 46.17 2.57
2944 3118 7.820648 ACCTAGCTAATTTTGTCTGACAAATG 58.179 34.615 30.10 21.56 46.17 2.32
2945 3119 8.409358 AACCTAGCTAATTTTGTCTGACAAAT 57.591 30.769 30.10 21.01 46.17 2.32
2946 3120 7.817418 AACCTAGCTAATTTTGTCTGACAAA 57.183 32.000 27.14 27.14 45.37 2.83
2947 3121 7.817418 AAACCTAGCTAATTTTGTCTGACAA 57.183 32.000 18.69 18.69 36.11 3.18
2948 3122 8.372459 TCTAAACCTAGCTAATTTTGTCTGACA 58.628 33.333 6.36 6.36 0.00 3.58
2949 3123 8.773404 TCTAAACCTAGCTAATTTTGTCTGAC 57.227 34.615 0.00 0.00 0.00 3.51
2950 3124 9.383519 CATCTAAACCTAGCTAATTTTGTCTGA 57.616 33.333 7.71 3.52 0.00 3.27
2951 3125 9.383519 TCATCTAAACCTAGCTAATTTTGTCTG 57.616 33.333 7.71 8.26 0.00 3.51
2957 3131 8.633561 GCCAAATCATCTAAACCTAGCTAATTT 58.366 33.333 0.00 1.47 0.00 1.82
2958 3132 7.231519 GGCCAAATCATCTAAACCTAGCTAATT 59.768 37.037 0.00 0.00 0.00 1.40
2959 3133 6.717084 GGCCAAATCATCTAAACCTAGCTAAT 59.283 38.462 0.00 0.00 0.00 1.73
2960 3134 6.062095 GGCCAAATCATCTAAACCTAGCTAA 58.938 40.000 0.00 0.00 0.00 3.09
2961 3135 5.456186 GGGCCAAATCATCTAAACCTAGCTA 60.456 44.000 4.39 0.00 0.00 3.32
2962 3136 4.464947 GGCCAAATCATCTAAACCTAGCT 58.535 43.478 0.00 0.00 0.00 3.32
2963 3137 3.570125 GGGCCAAATCATCTAAACCTAGC 59.430 47.826 4.39 0.00 0.00 3.42
2964 3138 4.141158 AGGGGCCAAATCATCTAAACCTAG 60.141 45.833 4.39 0.00 0.00 3.02
2965 3139 3.791545 AGGGGCCAAATCATCTAAACCTA 59.208 43.478 4.39 0.00 0.00 3.08
2966 3140 2.587307 AGGGGCCAAATCATCTAAACCT 59.413 45.455 4.39 0.00 0.00 3.50
2967 3141 2.959030 GAGGGGCCAAATCATCTAAACC 59.041 50.000 4.39 0.00 0.00 3.27
2968 3142 3.903467 AGAGGGGCCAAATCATCTAAAC 58.097 45.455 4.39 0.00 0.00 2.01
2969 3143 5.044476 TGTTAGAGGGGCCAAATCATCTAAA 60.044 40.000 13.23 4.61 32.68 1.85
2970 3144 4.476846 TGTTAGAGGGGCCAAATCATCTAA 59.523 41.667 4.39 7.42 0.00 2.10
2971 3145 4.044308 TGTTAGAGGGGCCAAATCATCTA 58.956 43.478 4.39 0.40 0.00 1.98
2972 3146 2.852449 TGTTAGAGGGGCCAAATCATCT 59.148 45.455 4.39 1.53 0.00 2.90
2973 3147 3.297134 TGTTAGAGGGGCCAAATCATC 57.703 47.619 4.39 0.00 0.00 2.92
2974 3148 3.979501 ATGTTAGAGGGGCCAAATCAT 57.020 42.857 4.39 0.00 0.00 2.45
2975 3149 6.274436 TCATATATGTTAGAGGGGCCAAATCA 59.726 38.462 12.42 0.00 0.00 2.57
2976 3150 6.599638 GTCATATATGTTAGAGGGGCCAAATC 59.400 42.308 12.42 0.00 0.00 2.17
2977 3151 6.045459 TGTCATATATGTTAGAGGGGCCAAAT 59.955 38.462 12.42 0.00 0.00 2.32
2978 3152 5.371176 TGTCATATATGTTAGAGGGGCCAAA 59.629 40.000 12.42 0.00 0.00 3.28
2979 3153 4.910913 TGTCATATATGTTAGAGGGGCCAA 59.089 41.667 12.42 0.00 0.00 4.52
2980 3154 4.498493 TGTCATATATGTTAGAGGGGCCA 58.502 43.478 12.42 0.00 0.00 5.36
2981 3155 5.045578 ACATGTCATATATGTTAGAGGGGCC 60.046 44.000 12.42 0.00 35.32 5.80
2982 3156 6.054860 ACATGTCATATATGTTAGAGGGGC 57.945 41.667 12.42 0.00 35.32 5.80
2983 3157 9.658799 CTAAACATGTCATATATGTTAGAGGGG 57.341 37.037 12.42 0.00 45.28 4.79
2984 3158 9.155975 GCTAAACATGTCATATATGTTAGAGGG 57.844 37.037 16.75 5.41 45.28 4.30
2985 3159 9.155975 GGCTAAACATGTCATATATGTTAGAGG 57.844 37.037 16.75 3.32 45.28 3.69
2986 3160 9.155975 GGGCTAAACATGTCATATATGTTAGAG 57.844 37.037 16.75 8.31 45.28 2.43
2987 3161 8.100791 GGGGCTAAACATGTCATATATGTTAGA 58.899 37.037 16.75 0.00 45.28 2.10
2988 3162 7.336931 GGGGGCTAAACATGTCATATATGTTAG 59.663 40.741 12.42 11.85 45.28 2.34
2989 3163 7.018149 AGGGGGCTAAACATGTCATATATGTTA 59.982 37.037 12.42 3.72 45.28 2.41
2991 3165 5.313240 AGGGGGCTAAACATGTCATATATGT 59.687 40.000 12.42 0.00 40.30 2.29
2992 3166 5.819991 AGGGGGCTAAACATGTCATATATG 58.180 41.667 6.36 6.36 0.00 1.78
2993 3167 5.792712 AGAGGGGGCTAAACATGTCATATAT 59.207 40.000 0.00 0.00 0.00 0.86
2994 3168 5.162637 AGAGGGGGCTAAACATGTCATATA 58.837 41.667 0.00 0.00 0.00 0.86
2995 3169 3.983410 AGAGGGGGCTAAACATGTCATAT 59.017 43.478 0.00 0.00 0.00 1.78
2996 3170 3.393687 AGAGGGGGCTAAACATGTCATA 58.606 45.455 0.00 0.00 0.00 2.15
2997 3171 2.208872 AGAGGGGGCTAAACATGTCAT 58.791 47.619 0.00 0.00 0.00 3.06
2998 3172 1.668826 AGAGGGGGCTAAACATGTCA 58.331 50.000 0.00 0.00 0.00 3.58
2999 3173 5.763876 ATATAGAGGGGGCTAAACATGTC 57.236 43.478 0.00 0.00 0.00 3.06
3000 3174 5.610982 TGAATATAGAGGGGGCTAAACATGT 59.389 40.000 0.00 0.00 0.00 3.21
3001 3175 6.126863 TGAATATAGAGGGGGCTAAACATG 57.873 41.667 0.00 0.00 0.00 3.21
3002 3176 5.852250 ACTGAATATAGAGGGGGCTAAACAT 59.148 40.000 0.00 0.00 0.00 2.71
3003 3177 5.224441 ACTGAATATAGAGGGGGCTAAACA 58.776 41.667 0.00 0.00 0.00 2.83
3004 3178 5.827326 ACTGAATATAGAGGGGGCTAAAC 57.173 43.478 0.00 0.00 0.00 2.01
3005 3179 6.619852 AGAAACTGAATATAGAGGGGGCTAAA 59.380 38.462 0.00 0.00 0.00 1.85
3006 3180 6.043243 CAGAAACTGAATATAGAGGGGGCTAA 59.957 42.308 0.00 0.00 32.44 3.09
3007 3181 5.544176 CAGAAACTGAATATAGAGGGGGCTA 59.456 44.000 0.00 0.00 32.44 3.93
3008 3182 4.349342 CAGAAACTGAATATAGAGGGGGCT 59.651 45.833 0.00 0.00 32.44 5.19
3009 3183 4.505742 CCAGAAACTGAATATAGAGGGGGC 60.506 50.000 0.00 0.00 32.44 5.80
3010 3184 4.505742 GCCAGAAACTGAATATAGAGGGGG 60.506 50.000 0.00 0.00 32.44 5.40
3011 3185 4.349342 AGCCAGAAACTGAATATAGAGGGG 59.651 45.833 0.00 0.00 32.44 4.79
3012 3186 5.512232 GGAGCCAGAAACTGAATATAGAGGG 60.512 48.000 0.00 0.00 32.44 4.30
3013 3187 5.546526 GGAGCCAGAAACTGAATATAGAGG 58.453 45.833 0.00 0.00 32.44 3.69
3014 3188 5.226396 CGGAGCCAGAAACTGAATATAGAG 58.774 45.833 0.00 0.00 32.44 2.43
3015 3189 5.201713 CGGAGCCAGAAACTGAATATAGA 57.798 43.478 0.00 0.00 32.44 1.98
3038 3212 4.778415 CGACGGTCGGAGCAGTGG 62.778 72.222 22.18 4.29 36.00 4.00
3070 3244 0.824759 GGCAAGGTGAGTATCGGAGT 59.175 55.000 0.00 0.00 38.61 3.85
3113 3290 4.574674 ATCCAAACATCCTCTTAGCACA 57.425 40.909 0.00 0.00 0.00 4.57
3147 3324 3.306225 CCATCAACACCAATCCAAACCAG 60.306 47.826 0.00 0.00 0.00 4.00
3149 3326 2.612721 GCCATCAACACCAATCCAAACC 60.613 50.000 0.00 0.00 0.00 3.27
3150 3327 2.299867 AGCCATCAACACCAATCCAAAC 59.700 45.455 0.00 0.00 0.00 2.93
3151 3328 2.299582 CAGCCATCAACACCAATCCAAA 59.700 45.455 0.00 0.00 0.00 3.28
3152 3329 1.894466 CAGCCATCAACACCAATCCAA 59.106 47.619 0.00 0.00 0.00 3.53
3153 3330 1.548081 CAGCCATCAACACCAATCCA 58.452 50.000 0.00 0.00 0.00 3.41
3154 3331 0.174162 GCAGCCATCAACACCAATCC 59.826 55.000 0.00 0.00 0.00 3.01
3155 3332 0.174162 GGCAGCCATCAACACCAATC 59.826 55.000 6.55 0.00 0.00 2.67
3156 3333 0.251922 AGGCAGCCATCAACACCAAT 60.252 50.000 15.80 0.00 0.00 3.16
3157 3334 1.153524 AGGCAGCCATCAACACCAA 59.846 52.632 15.80 0.00 0.00 3.67
3158 3335 1.604308 CAGGCAGCCATCAACACCA 60.604 57.895 15.80 0.00 0.00 4.17
3159 3336 2.345760 CCAGGCAGCCATCAACACC 61.346 63.158 15.80 0.00 0.00 4.16
3160 3337 2.998279 GCCAGGCAGCCATCAACAC 61.998 63.158 15.80 0.00 0.00 3.32
3161 3338 2.677524 GCCAGGCAGCCATCAACA 60.678 61.111 15.80 0.00 0.00 3.33
3169 3346 0.881600 CAAAGTTTTGGCCAGGCAGC 60.882 55.000 15.19 0.00 34.59 5.25
3170 3347 3.294079 CAAAGTTTTGGCCAGGCAG 57.706 52.632 15.19 0.00 34.59 4.85
3250 3428 4.035558 CGAATTGAATGCTAAAGCTGGCTA 59.964 41.667 3.26 0.00 42.66 3.93
3254 3432 2.780014 CGCGAATTGAATGCTAAAGCTG 59.220 45.455 0.00 0.00 42.66 4.24
3277 3455 1.064060 CACGCCTAGCCAATAAGTTGC 59.936 52.381 0.00 0.00 33.90 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.