Multiple sequence alignment - TraesCS3D01G282700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G282700 chr3D 100.000 2796 0 0 1 2796 390662050 390664845 0.000000e+00 5164.0
1 TraesCS3D01G282700 chr3D 92.135 89 5 2 792 879 300775577 300775490 1.050000e-24 124.0
2 TraesCS3D01G282700 chr3B 92.494 906 43 7 987 1888 508250263 508251147 0.000000e+00 1273.0
3 TraesCS3D01G282700 chr3B 92.500 120 8 1 75 194 508247363 508247481 1.330000e-38 171.0
4 TraesCS3D01G282700 chr3B 94.286 35 1 1 2763 2796 508251319 508251353 5.000000e-03 52.8
5 TraesCS3D01G282700 chr3A 91.462 937 41 19 960 1888 511070723 511071628 0.000000e+00 1251.0
6 TraesCS3D01G282700 chr3A 88.039 719 74 9 2082 2796 511073141 511073851 0.000000e+00 841.0
7 TraesCS3D01G282700 chr3A 93.750 112 6 1 1965 2076 511071639 511071749 1.720000e-37 167.0
8 TraesCS3D01G282700 chr3A 87.129 101 13 0 800 900 159836440 159836340 6.330000e-22 115.0
9 TraesCS3D01G282700 chr3A 86.735 98 4 4 883 976 511070616 511070708 1.770000e-17 100.0
10 TraesCS3D01G282700 chr2A 82.805 663 81 19 2107 2745 564613448 564614101 1.880000e-156 562.0
11 TraesCS3D01G282700 chr2A 88.350 103 8 2 800 898 7558746 7558644 1.360000e-23 121.0
12 TraesCS3D01G282700 chr4D 81.016 669 102 15 2107 2753 354114879 354115544 2.480000e-140 508.0
13 TraesCS3D01G282700 chr4A 79.971 679 105 22 2108 2763 717817286 717816616 3.260000e-129 472.0
14 TraesCS3D01G282700 chr4A 88.350 103 10 2 794 895 603411378 603411277 3.780000e-24 122.0
15 TraesCS3D01G282700 chr7D 82.519 532 81 12 2108 2630 561805999 561805471 9.130000e-125 457.0
16 TraesCS3D01G282700 chr7D 79.819 664 90 26 2108 2753 329100541 329099904 7.110000e-121 444.0
17 TraesCS3D01G282700 chr5B 81.888 519 80 13 2123 2630 163258681 163258166 2.570000e-115 425.0
18 TraesCS3D01G282700 chr1B 78.435 626 106 21 2110 2712 675455641 675456260 5.650000e-102 381.0
19 TraesCS3D01G282700 chr1B 88.776 98 7 4 796 892 61526004 61525910 1.760000e-22 117.0
20 TraesCS3D01G282700 chr7A 80.556 504 87 10 2136 2630 25942679 25943180 7.310000e-101 377.0
21 TraesCS3D01G282700 chr5D 89.691 97 10 0 803 899 389033763 389033667 1.050000e-24 124.0
22 TraesCS3D01G282700 chr1A 93.023 86 5 1 799 884 353176179 353176263 1.050000e-24 124.0
23 TraesCS3D01G282700 chr7B 91.011 89 8 0 796 884 625161318 625161230 1.360000e-23 121.0
24 TraesCS3D01G282700 chr1D 90.323 93 7 2 793 884 337216898 337216807 1.360000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G282700 chr3D 390662050 390664845 2795 False 5164.000000 5164 100.000000 1 2796 1 chr3D.!!$F1 2795
1 TraesCS3D01G282700 chr3B 508247363 508251353 3990 False 498.933333 1273 93.093333 75 2796 3 chr3B.!!$F1 2721
2 TraesCS3D01G282700 chr3A 511070616 511073851 3235 False 589.750000 1251 89.996500 883 2796 4 chr3A.!!$F1 1913
3 TraesCS3D01G282700 chr2A 564613448 564614101 653 False 562.000000 562 82.805000 2107 2745 1 chr2A.!!$F1 638
4 TraesCS3D01G282700 chr4D 354114879 354115544 665 False 508.000000 508 81.016000 2107 2753 1 chr4D.!!$F1 646
5 TraesCS3D01G282700 chr4A 717816616 717817286 670 True 472.000000 472 79.971000 2108 2763 1 chr4A.!!$R2 655
6 TraesCS3D01G282700 chr7D 561805471 561805999 528 True 457.000000 457 82.519000 2108 2630 1 chr7D.!!$R2 522
7 TraesCS3D01G282700 chr7D 329099904 329100541 637 True 444.000000 444 79.819000 2108 2753 1 chr7D.!!$R1 645
8 TraesCS3D01G282700 chr5B 163258166 163258681 515 True 425.000000 425 81.888000 2123 2630 1 chr5B.!!$R1 507
9 TraesCS3D01G282700 chr1B 675455641 675456260 619 False 381.000000 381 78.435000 2110 2712 1 chr1B.!!$F1 602
10 TraesCS3D01G282700 chr7A 25942679 25943180 501 False 377.000000 377 80.556000 2136 2630 1 chr7A.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 628 0.034896 AACTGGCCGACTCGAACAAT 59.965 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 5788 0.03309 GAAGGGACGAAGACAACGGT 59.967 55.0 0.0 0.0 34.93 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.742201 CGCCGTGCAGCCACTACT 62.742 66.667 0.00 0.00 39.86 2.57
18 19 2.815647 GCCGTGCAGCCACTACTC 60.816 66.667 0.00 0.00 39.86 2.59
19 20 2.125512 CCGTGCAGCCACTACTCC 60.126 66.667 0.00 0.00 39.86 3.85
20 21 2.656646 CGTGCAGCCACTACTCCA 59.343 61.111 0.00 0.00 39.86 3.86
21 22 1.738099 CGTGCAGCCACTACTCCAC 60.738 63.158 0.00 0.00 39.86 4.02
22 23 1.674057 GTGCAGCCACTACTCCACT 59.326 57.895 0.00 0.00 38.93 4.00
23 24 0.895530 GTGCAGCCACTACTCCACTA 59.104 55.000 0.00 0.00 38.93 2.74
24 25 1.134965 GTGCAGCCACTACTCCACTAG 60.135 57.143 0.00 0.00 38.93 2.57
25 26 1.187087 GCAGCCACTACTCCACTAGT 58.813 55.000 0.00 0.00 42.62 2.57
26 27 2.291346 TGCAGCCACTACTCCACTAGTA 60.291 50.000 0.00 0.00 39.80 1.82
35 36 3.928005 ACTCCACTAGTAGGTCATCGA 57.072 47.619 1.45 0.00 36.36 3.59
36 37 3.543665 ACTCCACTAGTAGGTCATCGAC 58.456 50.000 1.45 0.00 36.36 4.20
37 38 4.444022 TACTCCACTAGTAGGTCATCGACC 60.444 50.000 4.95 4.95 44.91 4.79
46 47 2.421220 GTCATCGACCTCCTCCTCC 58.579 63.158 0.00 0.00 0.00 4.30
47 48 0.395862 GTCATCGACCTCCTCCTCCA 60.396 60.000 0.00 0.00 0.00 3.86
48 49 0.395862 TCATCGACCTCCTCCTCCAC 60.396 60.000 0.00 0.00 0.00 4.02
49 50 0.396417 CATCGACCTCCTCCTCCACT 60.396 60.000 0.00 0.00 0.00 4.00
50 51 0.396417 ATCGACCTCCTCCTCCACTG 60.396 60.000 0.00 0.00 0.00 3.66
51 52 1.304547 CGACCTCCTCCTCCACTGT 60.305 63.158 0.00 0.00 0.00 3.55
52 53 1.316706 CGACCTCCTCCTCCACTGTC 61.317 65.000 0.00 0.00 0.00 3.51
53 54 0.040499 GACCTCCTCCTCCACTGTCT 59.960 60.000 0.00 0.00 0.00 3.41
54 55 0.489567 ACCTCCTCCTCCACTGTCTT 59.510 55.000 0.00 0.00 0.00 3.01
55 56 1.190643 CCTCCTCCTCCACTGTCTTC 58.809 60.000 0.00 0.00 0.00 2.87
56 57 0.814457 CTCCTCCTCCACTGTCTTCG 59.186 60.000 0.00 0.00 0.00 3.79
57 58 1.216710 CCTCCTCCACTGTCTTCGC 59.783 63.158 0.00 0.00 0.00 4.70
58 59 1.216710 CTCCTCCACTGTCTTCGCC 59.783 63.158 0.00 0.00 0.00 5.54
59 60 2.125912 CCTCCACTGTCTTCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
60 61 2.125912 CTCCACTGTCTTCGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
61 62 2.915659 TCCACTGTCTTCGCCGGT 60.916 61.111 1.90 0.00 0.00 5.28
62 63 2.738521 CCACTGTCTTCGCCGGTG 60.739 66.667 9.28 9.28 38.63 4.94
63 64 2.029073 CACTGTCTTCGCCGGTGT 59.971 61.111 16.01 0.00 35.04 4.16
64 65 2.029073 ACTGTCTTCGCCGGTGTG 59.971 61.111 16.01 9.55 0.00 3.82
65 66 2.738521 CTGTCTTCGCCGGTGTGG 60.739 66.667 16.01 9.15 42.50 4.17
66 67 4.308458 TGTCTTCGCCGGTGTGGG 62.308 66.667 16.01 6.59 38.63 4.61
67 68 3.998672 GTCTTCGCCGGTGTGGGA 61.999 66.667 16.01 8.88 38.63 4.37
68 69 3.691342 TCTTCGCCGGTGTGGGAG 61.691 66.667 16.01 9.20 38.63 4.30
69 70 4.003788 CTTCGCCGGTGTGGGAGT 62.004 66.667 16.01 0.00 38.63 3.85
70 71 4.308458 TTCGCCGGTGTGGGAGTG 62.308 66.667 16.01 0.00 38.63 3.51
78 79 1.376466 GTGTGGGAGTGCAGGATGT 59.624 57.895 0.00 0.00 39.31 3.06
90 91 5.725362 AGTGCAGGATGTAGTTCTAGTTTC 58.275 41.667 0.00 0.00 39.31 2.78
93 94 4.081087 GCAGGATGTAGTTCTAGTTTCCCA 60.081 45.833 0.00 0.00 39.31 4.37
120 121 1.841919 TGGGGCTTTTAGTAGGGCTAC 59.158 52.381 0.00 0.00 36.35 3.58
121 122 1.841919 GGGGCTTTTAGTAGGGCTACA 59.158 52.381 0.00 0.00 38.48 2.74
148 149 0.972883 GCAGGAGGCTCCGATCTATT 59.027 55.000 27.11 5.59 42.75 1.73
149 150 2.171840 GCAGGAGGCTCCGATCTATTA 58.828 52.381 27.11 0.00 42.75 0.98
156 157 4.678256 AGGCTCCGATCTATTAGATGGAA 58.322 43.478 15.08 0.00 34.53 3.53
194 195 3.350219 TTGGAGCTTTTAGTAGGGCTG 57.650 47.619 0.00 0.00 35.01 4.85
196 197 1.291132 GAGCTTTTAGTAGGGCTGCG 58.709 55.000 0.00 0.00 35.01 5.18
199 200 1.369625 CTTTTAGTAGGGCTGCGTGG 58.630 55.000 0.00 0.00 0.00 4.94
200 201 0.035820 TTTTAGTAGGGCTGCGTGGG 60.036 55.000 0.00 0.00 0.00 4.61
201 202 0.905809 TTTAGTAGGGCTGCGTGGGA 60.906 55.000 0.00 0.00 0.00 4.37
203 204 4.162690 GTAGGGCTGCGTGGGAGG 62.163 72.222 0.00 0.00 0.00 4.30
204 205 4.392166 TAGGGCTGCGTGGGAGGA 62.392 66.667 0.00 0.00 0.00 3.71
214 215 4.779733 TGGGAGGACGGGAGGCTC 62.780 72.222 5.78 5.78 38.60 4.70
225 226 0.610687 GGGAGGCTCCGATCTATTGG 59.389 60.000 26.54 0.00 37.43 3.16
226 227 1.633774 GGAGGCTCCGATCTATTGGA 58.366 55.000 19.53 0.00 38.03 3.53
227 228 2.183679 GGAGGCTCCGATCTATTGGAT 58.816 52.381 19.53 0.00 39.58 3.41
228 229 2.093764 GGAGGCTCCGATCTATTGGATG 60.094 54.545 19.53 0.00 39.58 3.51
229 230 1.905215 AGGCTCCGATCTATTGGATGG 59.095 52.381 0.00 0.00 39.58 3.51
230 231 1.902508 GGCTCCGATCTATTGGATGGA 59.097 52.381 0.00 0.00 39.58 3.41
231 232 2.303022 GGCTCCGATCTATTGGATGGAA 59.697 50.000 0.00 0.00 39.58 3.53
232 233 3.054802 GGCTCCGATCTATTGGATGGAAT 60.055 47.826 0.00 0.00 39.58 3.01
233 234 4.566488 GGCTCCGATCTATTGGATGGAATT 60.566 45.833 0.00 0.00 39.58 2.17
234 235 4.633565 GCTCCGATCTATTGGATGGAATTC 59.366 45.833 0.00 0.00 39.58 2.17
235 236 5.570439 GCTCCGATCTATTGGATGGAATTCT 60.570 44.000 5.23 0.00 39.58 2.40
236 237 6.351371 GCTCCGATCTATTGGATGGAATTCTA 60.351 42.308 5.23 0.00 39.58 2.10
237 238 7.175347 TCCGATCTATTGGATGGAATTCTAG 57.825 40.000 5.23 0.00 35.41 2.43
238 239 6.726299 TCCGATCTATTGGATGGAATTCTAGT 59.274 38.462 5.23 0.00 35.41 2.57
239 240 7.893833 TCCGATCTATTGGATGGAATTCTAGTA 59.106 37.037 5.23 0.00 35.41 1.82
240 241 8.700051 CCGATCTATTGGATGGAATTCTAGTAT 58.300 37.037 5.23 0.00 34.33 2.12
241 242 9.743057 CGATCTATTGGATGGAATTCTAGTATC 57.257 37.037 5.23 5.00 34.33 2.24
243 244 8.380742 TCTATTGGATGGAATTCTAGTATCCC 57.619 38.462 19.35 8.51 37.17 3.85
244 245 8.186985 TCTATTGGATGGAATTCTAGTATCCCT 58.813 37.037 19.35 13.36 37.17 4.20
245 246 7.654287 ATTGGATGGAATTCTAGTATCCCTT 57.346 36.000 19.35 10.42 37.17 3.95
246 247 8.757307 ATTGGATGGAATTCTAGTATCCCTTA 57.243 34.615 19.35 11.16 37.17 2.69
247 248 7.554959 TGGATGGAATTCTAGTATCCCTTAC 57.445 40.000 19.35 0.00 37.17 2.34
248 249 7.313731 TGGATGGAATTCTAGTATCCCTTACT 58.686 38.462 19.35 0.00 43.66 2.24
249 250 7.794683 TGGATGGAATTCTAGTATCCCTTACTT 59.205 37.037 19.35 0.00 41.49 2.24
250 251 8.661345 GGATGGAATTCTAGTATCCCTTACTTT 58.339 37.037 5.23 0.00 41.49 2.66
251 252 9.495572 GATGGAATTCTAGTATCCCTTACTTTG 57.504 37.037 5.23 0.00 41.49 2.77
252 253 7.802117 TGGAATTCTAGTATCCCTTACTTTGG 58.198 38.462 5.23 0.00 41.49 3.28
253 254 7.626084 TGGAATTCTAGTATCCCTTACTTTGGA 59.374 37.037 5.23 0.00 41.49 3.53
254 255 8.151596 GGAATTCTAGTATCCCTTACTTTGGAG 58.848 40.741 5.23 0.00 41.49 3.86
255 256 6.481434 TTCTAGTATCCCTTACTTTGGAGC 57.519 41.667 0.00 0.00 41.49 4.70
256 257 5.778542 TCTAGTATCCCTTACTTTGGAGCT 58.221 41.667 0.00 0.00 41.49 4.09
257 258 6.203072 TCTAGTATCCCTTACTTTGGAGCTT 58.797 40.000 0.00 0.00 41.49 3.74
258 259 5.780958 AGTATCCCTTACTTTGGAGCTTT 57.219 39.130 0.00 0.00 37.96 3.51
259 260 6.140968 AGTATCCCTTACTTTGGAGCTTTT 57.859 37.500 0.00 0.00 37.96 2.27
260 261 7.266905 AGTATCCCTTACTTTGGAGCTTTTA 57.733 36.000 0.00 0.00 37.96 1.52
261 262 7.339482 AGTATCCCTTACTTTGGAGCTTTTAG 58.661 38.462 0.00 0.00 37.96 1.85
262 263 5.578157 TCCCTTACTTTGGAGCTTTTAGT 57.422 39.130 0.00 0.00 0.00 2.24
263 264 6.691255 TCCCTTACTTTGGAGCTTTTAGTA 57.309 37.500 0.00 0.00 0.00 1.82
264 265 6.708285 TCCCTTACTTTGGAGCTTTTAGTAG 58.292 40.000 0.00 0.00 0.00 2.57
265 266 5.880887 CCCTTACTTTGGAGCTTTTAGTAGG 59.119 44.000 0.00 0.00 0.00 3.18
266 267 5.880887 CCTTACTTTGGAGCTTTTAGTAGGG 59.119 44.000 10.68 10.68 33.89 3.53
267 268 3.687125 ACTTTGGAGCTTTTAGTAGGGC 58.313 45.455 0.00 0.00 0.00 5.19
268 269 3.330998 ACTTTGGAGCTTTTAGTAGGGCT 59.669 43.478 0.00 0.00 37.77 5.19
269 270 4.534897 ACTTTGGAGCTTTTAGTAGGGCTA 59.465 41.667 0.00 0.00 35.01 3.93
270 271 4.482952 TTGGAGCTTTTAGTAGGGCTAC 57.517 45.455 0.00 0.00 36.30 3.58
271 272 2.429610 TGGAGCTTTTAGTAGGGCTACG 59.570 50.000 0.00 0.00 38.38 3.51
272 273 2.429971 GGAGCTTTTAGTAGGGCTACGT 59.570 50.000 0.00 0.00 40.80 3.57
273 274 3.445857 GAGCTTTTAGTAGGGCTACGTG 58.554 50.000 0.00 0.00 40.80 4.49
274 275 2.830321 AGCTTTTAGTAGGGCTACGTGT 59.170 45.455 0.00 0.00 40.80 4.49
275 276 3.260128 AGCTTTTAGTAGGGCTACGTGTT 59.740 43.478 0.00 0.00 40.80 3.32
276 277 3.615937 GCTTTTAGTAGGGCTACGTGTTC 59.384 47.826 0.00 0.00 40.80 3.18
277 278 3.492421 TTTAGTAGGGCTACGTGTTCG 57.508 47.619 0.00 0.00 40.80 3.95
302 303 7.967854 CGTGCCAATCTAATGAATAAAGTTTCA 59.032 33.333 0.00 0.00 39.77 2.69
305 306 9.173939 GCCAATCTAATGAATAAAGTTTCATCG 57.826 33.333 0.00 0.00 43.73 3.84
324 325 0.316841 GAGCCTCCCATCTCGATGAC 59.683 60.000 8.42 0.00 41.20 3.06
325 326 1.006805 GCCTCCCATCTCGATGACG 60.007 63.158 8.42 0.00 41.20 4.35
335 336 2.076622 CTCGATGACGTAGGCTGGGG 62.077 65.000 0.00 0.00 40.69 4.96
343 344 1.218316 GTAGGCTGGGGTGACTTCG 59.782 63.158 0.00 0.00 0.00 3.79
353 354 0.389948 GGTGACTTCGATGGCTCGTT 60.390 55.000 5.66 0.00 45.25 3.85
357 358 2.802667 CTTCGATGGCTCGTTGGCG 61.803 63.158 6.32 0.00 45.25 5.69
360 361 2.230940 CGATGGCTCGTTGGCGTAG 61.231 63.158 0.37 0.00 45.14 3.51
364 365 0.739462 TGGCTCGTTGGCGTAGATTG 60.739 55.000 0.00 0.00 45.14 2.67
366 367 1.631072 CTCGTTGGCGTAGATTGCG 59.369 57.895 0.00 0.00 39.49 4.85
385 389 0.741915 GACCGATCTCTCTGGGTGAC 59.258 60.000 0.00 0.00 31.66 3.67
392 396 1.353358 TCTCTCTGGGTGACGTTAGGA 59.647 52.381 0.00 0.00 0.00 2.94
406 410 0.108520 TTAGGATTCGTCGGTGTGGC 60.109 55.000 0.00 0.00 0.00 5.01
434 442 2.266055 CTCTGTGGGTCCTTCGGC 59.734 66.667 0.00 0.00 0.00 5.54
442 450 2.428085 GGTCCTTCGGCCTCCTCTC 61.428 68.421 0.00 0.00 0.00 3.20
452 460 0.528684 GCCTCCTCTCCGTCAATTCG 60.529 60.000 0.00 0.00 0.00 3.34
473 481 1.061131 GTGCATCCTTCGATGTCAACG 59.939 52.381 0.00 0.00 46.56 4.10
498 506 5.714333 TGATGCCTATGAGATCTAGAGGTTC 59.286 44.000 15.18 13.04 0.00 3.62
516 524 0.541392 TCGGATGGTGGATCTGTTGG 59.459 55.000 0.00 0.00 38.47 3.77
526 534 3.865745 GTGGATCTGTTGGTATTCTGACG 59.134 47.826 0.00 0.00 0.00 4.35
528 536 4.113354 GGATCTGTTGGTATTCTGACGAC 58.887 47.826 0.00 0.00 0.00 4.34
537 545 1.429463 ATTCTGACGACGGCTTCAAC 58.571 50.000 0.65 0.00 0.00 3.18
543 551 1.091197 ACGACGGCTTCAACGGTTTT 61.091 50.000 0.00 0.00 35.23 2.43
570 578 3.543680 AGGATGATGGTTCGTTAGTGG 57.456 47.619 0.00 0.00 0.00 4.00
572 580 2.420129 GGATGATGGTTCGTTAGTGGCT 60.420 50.000 0.00 0.00 0.00 4.75
583 591 2.223377 CGTTAGTGGCTTTGGTGACTTC 59.777 50.000 0.00 0.00 0.00 3.01
586 594 1.145738 AGTGGCTTTGGTGACTTCCAT 59.854 47.619 0.00 0.00 37.33 3.41
607 615 1.334960 CCGTGATCAACAACAACTGGC 60.335 52.381 0.00 0.00 0.00 4.85
608 616 1.334960 CGTGATCAACAACAACTGGCC 60.335 52.381 0.00 0.00 0.00 5.36
611 619 0.951558 ATCAACAACAACTGGCCGAC 59.048 50.000 0.00 0.00 0.00 4.79
615 623 1.300620 CAACAACTGGCCGACTCGA 60.301 57.895 0.00 0.00 0.00 4.04
620 628 0.034896 AACTGGCCGACTCGAACAAT 59.965 50.000 0.00 0.00 0.00 2.71
625 633 0.442699 GCCGACTCGAACAATTGGAC 59.557 55.000 10.83 2.33 0.00 4.02
637 645 1.201647 CAATTGGACAGGAAGCAGCAG 59.798 52.381 0.00 0.00 0.00 4.24
643 651 1.170919 ACAGGAAGCAGCAGCAACAG 61.171 55.000 3.17 0.00 45.49 3.16
658 666 0.531311 AACAGGTCGTTGGTCCGTTC 60.531 55.000 0.00 0.00 36.12 3.95
660 668 2.195567 AGGTCGTTGGTCCGTTCGA 61.196 57.895 0.00 0.00 0.00 3.71
661 669 1.300080 GGTCGTTGGTCCGTTCGAA 60.300 57.895 0.00 0.00 34.23 3.71
663 671 0.230515 GTCGTTGGTCCGTTCGAAAC 59.769 55.000 0.00 0.00 34.23 2.78
664 672 0.102844 TCGTTGGTCCGTTCGAAACT 59.897 50.000 0.00 0.00 0.00 2.66
671 679 3.318839 TGGTCCGTTCGAAACTAAGAAGA 59.681 43.478 0.00 0.00 0.00 2.87
695 703 4.559099 CGATCATCCTCAGAGACCTCAATG 60.559 50.000 0.00 0.00 0.00 2.82
699 824 4.982241 TCCTCAGAGACCTCAATGTTTT 57.018 40.909 0.00 0.00 0.00 2.43
729 854 8.964476 TCTGAGTTGGACCTCAATATATTTTC 57.036 34.615 0.00 0.00 40.78 2.29
753 886 8.306680 TCCTTATTTTGAAGAGAGTTTGTACG 57.693 34.615 0.00 0.00 0.00 3.67
763 896 4.631813 AGAGAGTTTGTACGGATGATTTGC 59.368 41.667 0.00 0.00 0.00 3.68
777 910 3.405831 TGATTTGCTCGATGGATCATCC 58.594 45.455 0.00 0.00 37.57 3.51
796 929 5.420421 TCATCCAAGTCACCAGAAACAAAAA 59.580 36.000 0.00 0.00 0.00 1.94
815 948 5.536497 AAAAAGTACTCCCTTCATCCCAT 57.464 39.130 0.00 0.00 0.00 4.00
816 949 6.652205 AAAAAGTACTCCCTTCATCCCATA 57.348 37.500 0.00 0.00 0.00 2.74
817 950 6.652205 AAAAGTACTCCCTTCATCCCATAA 57.348 37.500 0.00 0.00 0.00 1.90
818 951 6.848562 AAAGTACTCCCTTCATCCCATAAT 57.151 37.500 0.00 0.00 0.00 1.28
819 952 7.947782 AAAGTACTCCCTTCATCCCATAATA 57.052 36.000 0.00 0.00 0.00 0.98
820 953 8.525729 AAAGTACTCCCTTCATCCCATAATAT 57.474 34.615 0.00 0.00 0.00 1.28
821 954 9.629649 AAAGTACTCCCTTCATCCCATAATATA 57.370 33.333 0.00 0.00 0.00 0.86
822 955 9.629649 AAGTACTCCCTTCATCCCATAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
823 956 9.273137 AGTACTCCCTTCATCCCATAATATAAG 57.727 37.037 0.00 0.00 0.00 1.73
824 957 9.268282 GTACTCCCTTCATCCCATAATATAAGA 57.732 37.037 0.00 0.00 0.00 2.10
825 958 8.386012 ACTCCCTTCATCCCATAATATAAGAG 57.614 38.462 0.00 0.00 0.00 2.85
826 959 7.092668 ACTCCCTTCATCCCATAATATAAGAGC 60.093 40.741 0.00 0.00 0.00 4.09
827 960 6.735229 TCCCTTCATCCCATAATATAAGAGCA 59.265 38.462 0.00 0.00 0.00 4.26
828 961 7.052873 CCCTTCATCCCATAATATAAGAGCAG 58.947 42.308 0.00 0.00 0.00 4.24
829 962 7.311549 CCCTTCATCCCATAATATAAGAGCAGT 60.312 40.741 0.00 0.00 0.00 4.40
830 963 8.105829 CCTTCATCCCATAATATAAGAGCAGTT 58.894 37.037 0.00 0.00 0.00 3.16
831 964 9.512588 CTTCATCCCATAATATAAGAGCAGTTT 57.487 33.333 0.00 0.00 0.00 2.66
832 965 9.866655 TTCATCCCATAATATAAGAGCAGTTTT 57.133 29.630 0.00 0.00 0.00 2.43
833 966 9.866655 TCATCCCATAATATAAGAGCAGTTTTT 57.133 29.630 0.00 0.00 0.00 1.94
846 979 8.904099 AAGAGCAGTTTTTACATTAGTGTAGT 57.096 30.769 0.00 0.00 41.56 2.73
847 980 8.311650 AGAGCAGTTTTTACATTAGTGTAGTG 57.688 34.615 0.00 0.00 41.56 2.74
848 981 7.931948 AGAGCAGTTTTTACATTAGTGTAGTGT 59.068 33.333 0.00 0.00 41.56 3.55
849 982 8.446599 AGCAGTTTTTACATTAGTGTAGTGTT 57.553 30.769 0.00 0.00 41.56 3.32
850 983 9.550406 AGCAGTTTTTACATTAGTGTAGTGTTA 57.450 29.630 0.00 0.00 41.56 2.41
857 990 9.649024 TTTACATTAGTGTAGTGTTAAAAACGC 57.351 29.630 0.00 0.00 41.56 4.84
875 1008 6.780706 AAACGCTCTTATATTATGGAACGG 57.219 37.500 0.00 0.00 0.00 4.44
876 1009 5.717078 ACGCTCTTATATTATGGAACGGA 57.283 39.130 0.00 0.00 0.00 4.69
877 1010 5.710984 ACGCTCTTATATTATGGAACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
878 1011 5.103000 CGCTCTTATATTATGGAACGGAGG 58.897 45.833 0.00 0.00 0.00 4.30
879 1012 5.336531 CGCTCTTATATTATGGAACGGAGGT 60.337 44.000 0.00 0.00 0.00 3.85
880 1013 6.127814 CGCTCTTATATTATGGAACGGAGGTA 60.128 42.308 0.00 0.00 0.00 3.08
881 1014 7.259161 GCTCTTATATTATGGAACGGAGGTAG 58.741 42.308 0.00 0.00 0.00 3.18
882 1015 7.093858 GCTCTTATATTATGGAACGGAGGTAGT 60.094 40.741 0.00 0.00 0.00 2.73
883 1016 9.458727 CTCTTATATTATGGAACGGAGGTAGTA 57.541 37.037 0.00 0.00 0.00 1.82
884 1017 9.812347 TCTTATATTATGGAACGGAGGTAGTAA 57.188 33.333 0.00 0.00 0.00 2.24
885 1018 9.852091 CTTATATTATGGAACGGAGGTAGTAAC 57.148 37.037 0.00 0.00 0.00 2.50
886 1019 9.592196 TTATATTATGGAACGGAGGTAGTAACT 57.408 33.333 0.00 0.00 0.00 2.24
887 1020 6.803366 ATTATGGAACGGAGGTAGTAACTT 57.197 37.500 0.00 0.00 0.00 2.66
888 1021 3.947910 TGGAACGGAGGTAGTAACTTG 57.052 47.619 0.00 0.00 0.00 3.16
889 1022 3.233507 TGGAACGGAGGTAGTAACTTGT 58.766 45.455 0.00 0.00 0.00 3.16
892 1025 5.304101 TGGAACGGAGGTAGTAACTTGTTTA 59.696 40.000 7.85 0.56 0.00 2.01
922 1056 9.541143 TTTGGAGAATTCACAGTTTTATTTTCC 57.459 29.630 8.44 1.62 33.91 3.13
1081 3237 1.440518 CCGTCCGTATCGCGATCTG 60.441 63.158 27.45 18.55 44.77 2.90
1117 3273 1.950909 GACTCCCCTCTGACTGATACG 59.049 57.143 0.00 0.00 0.00 3.06
1118 3274 1.323412 CTCCCCTCTGACTGATACGG 58.677 60.000 0.00 0.00 0.00 4.02
1119 3275 0.629596 TCCCCTCTGACTGATACGGT 59.370 55.000 0.00 0.00 0.00 4.83
1120 3276 0.747255 CCCCTCTGACTGATACGGTG 59.253 60.000 0.00 0.00 0.00 4.94
1121 3277 1.685180 CCCCTCTGACTGATACGGTGA 60.685 57.143 0.00 0.00 0.00 4.02
1122 3278 2.311463 CCCTCTGACTGATACGGTGAT 58.689 52.381 0.00 0.00 0.00 3.06
1123 3279 3.487372 CCCTCTGACTGATACGGTGATA 58.513 50.000 0.00 0.00 0.00 2.15
1124 3280 3.253677 CCCTCTGACTGATACGGTGATAC 59.746 52.174 0.00 0.00 0.00 2.24
1133 3289 3.005050 TGATACGGTGATACCCAATCGTC 59.995 47.826 0.00 0.00 37.79 4.20
1134 3290 0.462789 ACGGTGATACCCAATCGTCC 59.537 55.000 0.00 0.00 37.42 4.79
1135 3291 0.249741 CGGTGATACCCAATCGTCCC 60.250 60.000 0.00 0.00 37.42 4.46
1136 3292 0.834612 GGTGATACCCAATCGTCCCA 59.165 55.000 0.00 0.00 37.42 4.37
1137 3293 1.202651 GGTGATACCCAATCGTCCCAG 60.203 57.143 0.00 0.00 37.42 4.45
1138 3294 1.760613 GTGATACCCAATCGTCCCAGA 59.239 52.381 0.00 0.00 37.42 3.86
1139 3295 2.039418 TGATACCCAATCGTCCCAGAG 58.961 52.381 0.00 0.00 37.42 3.35
1140 3296 2.317040 GATACCCAATCGTCCCAGAGA 58.683 52.381 0.00 0.00 0.00 3.10
1521 3677 2.663196 CTTTCGACGCCTTCCCCT 59.337 61.111 0.00 0.00 0.00 4.79
1675 3845 7.918562 GCCGAATTTATTAGCTTCCATTTGTTA 59.081 33.333 0.00 0.00 0.00 2.41
1694 3864 4.225942 TGTTATCAGGATCACTTGCCTTCT 59.774 41.667 0.00 0.00 30.41 2.85
1746 3916 4.889832 AGATCATCCATTTTCTTGCGTC 57.110 40.909 0.00 0.00 0.00 5.19
1802 3972 3.676646 GCAAATTGACATTCTCAGCCAAC 59.323 43.478 0.00 0.00 0.00 3.77
1860 4031 5.521372 GCATGGCAATTTCTCTGGTAATTTC 59.479 40.000 0.00 0.00 0.00 2.17
1883 4055 9.823647 TTTCTTTTACTACATGGCAATTTTTCA 57.176 25.926 0.00 0.00 0.00 2.69
1884 4056 8.810652 TCTTTTACTACATGGCAATTTTTCAC 57.189 30.769 0.00 0.00 0.00 3.18
1885 4057 8.637986 TCTTTTACTACATGGCAATTTTTCACT 58.362 29.630 0.00 0.00 0.00 3.41
1886 4058 9.260002 CTTTTACTACATGGCAATTTTTCACTT 57.740 29.630 0.00 0.00 0.00 3.16
1887 4059 9.606631 TTTTACTACATGGCAATTTTTCACTTT 57.393 25.926 0.00 0.00 0.00 2.66
1888 4060 9.606631 TTTACTACATGGCAATTTTTCACTTTT 57.393 25.926 0.00 0.00 0.00 2.27
1889 4061 9.606631 TTACTACATGGCAATTTTTCACTTTTT 57.393 25.926 0.00 0.00 0.00 1.94
1907 4079 3.808984 TTTTTGCGGGGGCAATTTT 57.191 42.105 2.00 0.00 0.00 1.82
1908 4080 2.058593 TTTTTGCGGGGGCAATTTTT 57.941 40.000 2.00 0.00 0.00 1.94
1909 4081 1.598882 TTTTGCGGGGGCAATTTTTC 58.401 45.000 2.00 0.00 0.00 2.29
1961 4133 7.762615 CACAAGCATGGACATTTCATCTATTTT 59.237 33.333 0.00 0.00 0.00 1.82
1967 4139 6.728200 TGGACATTTCATCTATTTTCGCATC 58.272 36.000 0.00 0.00 0.00 3.91
2018 4190 3.023832 CAAAATCTAGGGGCGGATTTGT 58.976 45.455 0.00 0.00 40.58 2.83
2076 4248 5.665459 CAATGCCGGGGATATTTACAAAAA 58.335 37.500 2.18 0.00 0.00 1.94
2078 4250 3.702045 TGCCGGGGATATTTACAAAAAGG 59.298 43.478 2.18 0.00 0.00 3.11
2196 5754 6.345646 TCTAGGTTTATAGACCACCTACCA 57.654 41.667 14.50 0.00 41.42 3.25
2255 5814 2.525368 TGTCTTCGTCCCTTCTCATCA 58.475 47.619 0.00 0.00 0.00 3.07
2339 5901 0.810031 AGCGCACGAGAACAACAACT 60.810 50.000 11.47 0.00 0.00 3.16
2387 5949 3.679083 CGGAAGGATCCAACTTGTAGACC 60.679 52.174 15.82 0.00 46.97 3.85
2407 5969 1.259507 CCACGAACACAAACGAACGAT 59.740 47.619 0.14 0.00 0.00 3.73
2408 5970 2.472115 CCACGAACACAAACGAACGATA 59.528 45.455 0.14 0.00 0.00 2.92
2421 5983 3.056393 ACGAACGATAACAAGATCCACCA 60.056 43.478 0.14 0.00 0.00 4.17
2463 6025 1.067582 GACCGAATCCCGCGAGATT 59.932 57.895 16.22 16.22 39.19 2.40
2499 6061 2.767445 CGCACACCCTCCGACGATA 61.767 63.158 0.00 0.00 0.00 2.92
2524 6086 2.923035 CACCACCGAGACAGGGGT 60.923 66.667 0.00 0.00 35.94 4.95
2562 6130 1.006102 CTTCAGAGAACCGCACCGT 60.006 57.895 0.00 0.00 0.00 4.83
2566 6134 0.242825 CAGAGAACCGCACCGTCTTA 59.757 55.000 0.00 0.00 0.00 2.10
2574 6142 2.219458 CCGCACCGTCTTATCTCTCTA 58.781 52.381 0.00 0.00 0.00 2.43
2653 6233 0.392863 CATTCACCACGCCTCCATGA 60.393 55.000 0.00 0.00 0.00 3.07
2660 6240 0.251916 CACGCCTCCATGACCCTAAA 59.748 55.000 0.00 0.00 0.00 1.85
2724 6306 4.389374 CACAAGAAACTCTAGCCAAAGGA 58.611 43.478 0.00 0.00 0.00 3.36
2753 6336 6.265422 TCTTTCTTCCCATGAAGGAAAGAAAC 59.735 38.462 21.92 0.00 43.85 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.742201 AGTAGTGGCTGCACGGCG 62.742 66.667 4.80 4.80 42.02 6.46
1 2 2.815647 GAGTAGTGGCTGCACGGC 60.816 66.667 0.50 0.00 38.97 5.68
2 3 2.125512 GGAGTAGTGGCTGCACGG 60.126 66.667 0.50 0.00 0.00 4.94
3 4 1.738099 GTGGAGTAGTGGCTGCACG 60.738 63.158 0.50 0.00 45.17 5.34
5 6 1.186200 CTAGTGGAGTAGTGGCTGCA 58.814 55.000 0.50 0.00 34.46 4.41
6 7 1.187087 ACTAGTGGAGTAGTGGCTGC 58.813 55.000 0.00 0.00 36.27 5.25
14 15 4.701765 GTCGATGACCTACTAGTGGAGTA 58.298 47.826 7.98 0.00 39.81 2.59
15 16 3.543665 GTCGATGACCTACTAGTGGAGT 58.456 50.000 7.98 4.00 42.69 3.85
28 29 0.395862 TGGAGGAGGAGGTCGATGAC 60.396 60.000 0.00 0.00 0.00 3.06
29 30 0.395862 GTGGAGGAGGAGGTCGATGA 60.396 60.000 0.00 0.00 0.00 2.92
30 31 0.396417 AGTGGAGGAGGAGGTCGATG 60.396 60.000 0.00 0.00 0.00 3.84
31 32 0.396417 CAGTGGAGGAGGAGGTCGAT 60.396 60.000 0.00 0.00 0.00 3.59
32 33 1.000771 CAGTGGAGGAGGAGGTCGA 60.001 63.158 0.00 0.00 0.00 4.20
33 34 1.304547 ACAGTGGAGGAGGAGGTCG 60.305 63.158 0.00 0.00 0.00 4.79
34 35 0.040499 AGACAGTGGAGGAGGAGGTC 59.960 60.000 0.00 0.00 0.00 3.85
35 36 0.489567 AAGACAGTGGAGGAGGAGGT 59.510 55.000 0.00 0.00 0.00 3.85
36 37 1.190643 GAAGACAGTGGAGGAGGAGG 58.809 60.000 0.00 0.00 0.00 4.30
37 38 0.814457 CGAAGACAGTGGAGGAGGAG 59.186 60.000 0.00 0.00 0.00 3.69
38 39 1.251527 GCGAAGACAGTGGAGGAGGA 61.252 60.000 0.00 0.00 0.00 3.71
39 40 1.216710 GCGAAGACAGTGGAGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
40 41 1.216710 GGCGAAGACAGTGGAGGAG 59.783 63.158 0.00 0.00 31.66 3.69
41 42 2.636412 CGGCGAAGACAGTGGAGGA 61.636 63.158 0.00 0.00 27.25 3.71
42 43 2.125912 CGGCGAAGACAGTGGAGG 60.126 66.667 0.00 0.00 27.25 4.30
43 44 2.125912 CCGGCGAAGACAGTGGAG 60.126 66.667 9.30 0.00 27.25 3.86
44 45 2.915659 ACCGGCGAAGACAGTGGA 60.916 61.111 9.30 0.00 27.25 4.02
45 46 2.738521 CACCGGCGAAGACAGTGG 60.739 66.667 9.30 0.00 27.25 4.00
46 47 2.029073 ACACCGGCGAAGACAGTG 59.971 61.111 9.30 9.49 27.25 3.66
47 48 2.029073 CACACCGGCGAAGACAGT 59.971 61.111 9.30 0.00 27.25 3.55
48 49 2.738521 CCACACCGGCGAAGACAG 60.739 66.667 9.30 0.00 27.25 3.51
49 50 4.308458 CCCACACCGGCGAAGACA 62.308 66.667 9.30 0.00 27.25 3.41
50 51 3.934391 CTCCCACACCGGCGAAGAC 62.934 68.421 9.30 0.00 0.00 3.01
51 52 3.691342 CTCCCACACCGGCGAAGA 61.691 66.667 9.30 0.00 0.00 2.87
52 53 4.003788 ACTCCCACACCGGCGAAG 62.004 66.667 9.30 2.04 0.00 3.79
53 54 4.308458 CACTCCCACACCGGCGAA 62.308 66.667 9.30 0.00 0.00 4.70
57 58 4.704833 CCTGCACTCCCACACCGG 62.705 72.222 0.00 0.00 0.00 5.28
58 59 2.959484 ATCCTGCACTCCCACACCG 61.959 63.158 0.00 0.00 0.00 4.94
59 60 1.377725 CATCCTGCACTCCCACACC 60.378 63.158 0.00 0.00 0.00 4.16
60 61 0.613260 TACATCCTGCACTCCCACAC 59.387 55.000 0.00 0.00 0.00 3.82
61 62 0.904649 CTACATCCTGCACTCCCACA 59.095 55.000 0.00 0.00 0.00 4.17
62 63 0.905357 ACTACATCCTGCACTCCCAC 59.095 55.000 0.00 0.00 0.00 4.61
63 64 1.555075 GAACTACATCCTGCACTCCCA 59.445 52.381 0.00 0.00 0.00 4.37
64 65 1.834263 AGAACTACATCCTGCACTCCC 59.166 52.381 0.00 0.00 0.00 4.30
65 66 3.702045 ACTAGAACTACATCCTGCACTCC 59.298 47.826 0.00 0.00 0.00 3.85
66 67 4.993029 ACTAGAACTACATCCTGCACTC 57.007 45.455 0.00 0.00 0.00 3.51
67 68 5.337652 GGAAACTAGAACTACATCCTGCACT 60.338 44.000 0.00 0.00 0.00 4.40
68 69 4.870991 GGAAACTAGAACTACATCCTGCAC 59.129 45.833 0.00 0.00 0.00 4.57
69 70 4.081087 GGGAAACTAGAACTACATCCTGCA 60.081 45.833 0.00 0.00 0.00 4.41
70 71 4.081087 TGGGAAACTAGAACTACATCCTGC 60.081 45.833 0.00 0.00 0.00 4.85
71 72 5.187967 AGTGGGAAACTAGAACTACATCCTG 59.812 44.000 0.00 0.00 37.36 3.86
72 73 5.187967 CAGTGGGAAACTAGAACTACATCCT 59.812 44.000 0.00 0.00 36.83 3.24
73 74 5.420409 CAGTGGGAAACTAGAACTACATCC 58.580 45.833 0.00 0.00 36.83 3.51
78 79 5.305585 CAAAGCAGTGGGAAACTAGAACTA 58.694 41.667 0.00 0.00 36.83 2.24
93 94 2.381752 ACTAAAAGCCCCAAAGCAGT 57.618 45.000 0.00 0.00 34.23 4.40
120 121 4.201122 GCCTCCTGCCCTCCCATG 62.201 72.222 0.00 0.00 0.00 3.66
121 122 4.444957 AGCCTCCTGCCCTCCCAT 62.445 66.667 0.00 0.00 42.71 4.00
139 140 9.184523 AGACTAGAATTCCATCTAATAGATCGG 57.815 37.037 0.65 6.18 31.32 4.18
148 149 5.688220 AGGGGAGACTAGAATTCCATCTA 57.312 43.478 0.65 0.00 32.50 1.98
149 150 4.567987 AGGGGAGACTAGAATTCCATCT 57.432 45.455 0.65 2.62 32.50 2.90
156 157 5.222278 TCCAAAGTAGGGGAGACTAGAAT 57.778 43.478 0.00 0.00 0.00 2.40
206 207 0.610687 CCAATAGATCGGAGCCTCCC 59.389 60.000 4.85 0.00 31.13 4.30
207 208 1.633774 TCCAATAGATCGGAGCCTCC 58.366 55.000 0.00 0.00 0.00 4.30
208 209 2.093764 CCATCCAATAGATCGGAGCCTC 60.094 54.545 0.00 0.00 33.97 4.70
209 210 1.905215 CCATCCAATAGATCGGAGCCT 59.095 52.381 0.00 0.00 33.97 4.58
210 211 1.902508 TCCATCCAATAGATCGGAGCC 59.097 52.381 0.00 0.00 33.97 4.70
212 213 6.047511 AGAATTCCATCCAATAGATCGGAG 57.952 41.667 0.65 0.00 35.17 4.63
213 214 6.726299 ACTAGAATTCCATCCAATAGATCGGA 59.274 38.462 0.65 0.00 33.17 4.55
214 215 6.940739 ACTAGAATTCCATCCAATAGATCGG 58.059 40.000 0.65 0.00 30.59 4.18
215 216 9.743057 GATACTAGAATTCCATCCAATAGATCG 57.257 37.037 0.65 0.00 30.59 3.69
217 218 8.997734 GGGATACTAGAATTCCATCCAATAGAT 58.002 37.037 19.58 5.16 37.49 1.98
218 219 8.186985 AGGGATACTAGAATTCCATCCAATAGA 58.813 37.037 19.58 1.81 37.49 1.98
219 220 8.386012 AGGGATACTAGAATTCCATCCAATAG 57.614 38.462 19.58 9.79 37.49 1.73
220 221 8.757307 AAGGGATACTAGAATTCCATCCAATA 57.243 34.615 19.58 0.20 37.49 1.90
221 222 7.654287 AAGGGATACTAGAATTCCATCCAAT 57.346 36.000 19.58 10.32 37.49 3.16
222 223 7.794683 AGTAAGGGATACTAGAATTCCATCCAA 59.205 37.037 19.58 8.40 43.16 3.53
223 224 7.313731 AGTAAGGGATACTAGAATTCCATCCA 58.686 38.462 19.58 5.15 43.16 3.41
224 225 7.800300 AGTAAGGGATACTAGAATTCCATCC 57.200 40.000 13.67 13.67 43.16 3.51
225 226 9.495572 CAAAGTAAGGGATACTAGAATTCCATC 57.504 37.037 0.65 0.60 44.22 3.51
226 227 8.440771 CCAAAGTAAGGGATACTAGAATTCCAT 58.559 37.037 0.65 0.00 44.22 3.41
227 228 7.626084 TCCAAAGTAAGGGATACTAGAATTCCA 59.374 37.037 0.65 0.00 44.22 3.53
228 229 8.030913 TCCAAAGTAAGGGATACTAGAATTCC 57.969 38.462 0.65 0.00 44.22 3.01
229 230 7.658167 GCTCCAAAGTAAGGGATACTAGAATTC 59.342 40.741 0.00 0.00 44.22 2.17
230 231 7.348537 AGCTCCAAAGTAAGGGATACTAGAATT 59.651 37.037 0.00 0.00 44.22 2.17
231 232 6.847036 AGCTCCAAAGTAAGGGATACTAGAAT 59.153 38.462 0.00 0.00 44.22 2.40
232 233 6.203072 AGCTCCAAAGTAAGGGATACTAGAA 58.797 40.000 0.00 0.00 44.22 2.10
233 234 5.778542 AGCTCCAAAGTAAGGGATACTAGA 58.221 41.667 0.00 0.00 44.22 2.43
234 235 6.487299 AAGCTCCAAAGTAAGGGATACTAG 57.513 41.667 0.00 0.00 44.22 2.57
235 236 6.886178 AAAGCTCCAAAGTAAGGGATACTA 57.114 37.500 0.00 0.00 44.22 1.82
237 238 7.110810 ACTAAAAGCTCCAAAGTAAGGGATAC 58.889 38.462 0.00 0.00 31.57 2.24
238 239 7.266905 ACTAAAAGCTCCAAAGTAAGGGATA 57.733 36.000 0.00 0.00 31.57 2.59
239 240 6.140968 ACTAAAAGCTCCAAAGTAAGGGAT 57.859 37.500 0.00 0.00 31.57 3.85
240 241 5.578157 ACTAAAAGCTCCAAAGTAAGGGA 57.422 39.130 0.00 0.00 0.00 4.20
241 242 5.880887 CCTACTAAAAGCTCCAAAGTAAGGG 59.119 44.000 0.00 0.00 0.00 3.95
242 243 5.880887 CCCTACTAAAAGCTCCAAAGTAAGG 59.119 44.000 0.00 0.00 0.00 2.69
243 244 5.354513 GCCCTACTAAAAGCTCCAAAGTAAG 59.645 44.000 0.00 0.00 0.00 2.34
244 245 5.013808 AGCCCTACTAAAAGCTCCAAAGTAA 59.986 40.000 0.00 0.00 0.00 2.24
245 246 4.534897 AGCCCTACTAAAAGCTCCAAAGTA 59.465 41.667 0.00 0.00 0.00 2.24
246 247 3.330998 AGCCCTACTAAAAGCTCCAAAGT 59.669 43.478 0.00 0.00 0.00 2.66
247 248 3.956744 AGCCCTACTAAAAGCTCCAAAG 58.043 45.455 0.00 0.00 0.00 2.77
248 249 4.622220 CGTAGCCCTACTAAAAGCTCCAAA 60.622 45.833 4.16 0.00 36.79 3.28
249 250 3.118884 CGTAGCCCTACTAAAAGCTCCAA 60.119 47.826 4.16 0.00 36.79 3.53
250 251 2.429610 CGTAGCCCTACTAAAAGCTCCA 59.570 50.000 4.16 0.00 36.79 3.86
251 252 2.429971 ACGTAGCCCTACTAAAAGCTCC 59.570 50.000 4.16 0.00 36.79 4.70
252 253 3.119209 ACACGTAGCCCTACTAAAAGCTC 60.119 47.826 4.16 0.00 36.79 4.09
253 254 2.830321 ACACGTAGCCCTACTAAAAGCT 59.170 45.455 4.16 0.00 39.37 3.74
254 255 3.242549 ACACGTAGCCCTACTAAAAGC 57.757 47.619 4.16 0.00 34.04 3.51
255 256 3.855950 CGAACACGTAGCCCTACTAAAAG 59.144 47.826 4.16 0.00 34.04 2.27
256 257 3.255642 ACGAACACGTAGCCCTACTAAAA 59.744 43.478 4.16 0.00 38.51 1.52
257 258 2.819608 ACGAACACGTAGCCCTACTAAA 59.180 45.455 4.16 0.00 38.51 1.85
258 259 2.162208 CACGAACACGTAGCCCTACTAA 59.838 50.000 4.16 0.00 38.51 2.24
259 260 1.739466 CACGAACACGTAGCCCTACTA 59.261 52.381 4.16 0.00 38.51 1.82
260 261 0.524862 CACGAACACGTAGCCCTACT 59.475 55.000 4.16 0.00 38.51 2.57
261 262 1.074872 GCACGAACACGTAGCCCTAC 61.075 60.000 0.00 0.00 38.51 3.18
262 263 1.213537 GCACGAACACGTAGCCCTA 59.786 57.895 0.00 0.00 38.51 3.53
263 264 2.048503 GCACGAACACGTAGCCCT 60.049 61.111 0.00 0.00 38.51 5.19
264 265 3.116531 GGCACGAACACGTAGCCC 61.117 66.667 17.90 7.38 42.37 5.19
265 266 1.296056 ATTGGCACGAACACGTAGCC 61.296 55.000 20.11 20.11 45.10 3.93
266 267 0.094730 GATTGGCACGAACACGTAGC 59.905 55.000 0.00 0.00 38.51 3.58
267 268 1.710013 AGATTGGCACGAACACGTAG 58.290 50.000 0.00 0.00 38.51 3.51
268 269 3.300852 TTAGATTGGCACGAACACGTA 57.699 42.857 0.00 0.00 38.51 3.57
269 270 2.157834 TTAGATTGGCACGAACACGT 57.842 45.000 0.00 0.00 41.02 4.49
270 271 2.670905 TCATTAGATTGGCACGAACACG 59.329 45.455 0.00 0.00 0.00 4.49
271 272 4.678509 TTCATTAGATTGGCACGAACAC 57.321 40.909 0.00 0.00 0.00 3.32
272 273 6.993786 TTATTCATTAGATTGGCACGAACA 57.006 33.333 0.00 0.00 0.00 3.18
273 274 7.472543 ACTTTATTCATTAGATTGGCACGAAC 58.527 34.615 0.00 0.00 0.00 3.95
274 275 7.624360 ACTTTATTCATTAGATTGGCACGAA 57.376 32.000 0.00 0.00 0.00 3.85
275 276 7.624360 AACTTTATTCATTAGATTGGCACGA 57.376 32.000 0.00 0.00 0.00 4.35
276 277 7.967854 TGAAACTTTATTCATTAGATTGGCACG 59.032 33.333 0.00 0.00 34.50 5.34
277 278 9.807649 ATGAAACTTTATTCATTAGATTGGCAC 57.192 29.630 0.00 0.00 45.39 5.01
305 306 0.316841 GTCATCGAGATGGGAGGCTC 59.683 60.000 5.78 5.78 39.24 4.70
324 325 1.218316 GAAGTCACCCCAGCCTACG 59.782 63.158 0.00 0.00 0.00 3.51
325 326 1.218316 CGAAGTCACCCCAGCCTAC 59.782 63.158 0.00 0.00 0.00 3.18
343 344 0.249489 ATCTACGCCAACGAGCCATC 60.249 55.000 0.00 0.00 43.93 3.51
353 354 2.011741 ATCGGTCGCAATCTACGCCA 62.012 55.000 0.00 0.00 0.00 5.69
357 358 2.550606 AGAGAGATCGGTCGCAATCTAC 59.449 50.000 1.27 0.00 32.43 2.59
360 361 1.601663 CCAGAGAGATCGGTCGCAATC 60.602 57.143 1.27 0.00 0.00 2.67
364 365 2.122167 ACCCAGAGAGATCGGTCGC 61.122 63.158 0.00 0.00 0.00 5.19
366 367 0.741915 GTCACCCAGAGAGATCGGTC 59.258 60.000 0.00 0.00 0.00 4.79
385 389 1.265568 CACACCGACGAATCCTAACG 58.734 55.000 0.00 0.00 0.00 3.18
434 442 3.650409 CGAATTGACGGAGAGGAGG 57.350 57.895 0.00 0.00 0.00 4.30
459 467 1.061131 GCATCACGTTGACATCGAAGG 59.939 52.381 12.66 3.74 0.00 3.46
473 481 5.016173 ACCTCTAGATCTCATAGGCATCAC 58.984 45.833 14.76 0.00 0.00 3.06
498 506 0.253044 ACCAACAGATCCACCATCCG 59.747 55.000 0.00 0.00 30.71 4.18
516 524 2.273370 TGAAGCCGTCGTCAGAATAC 57.727 50.000 0.00 0.00 0.00 1.89
526 534 3.930400 AAAAACCGTTGAAGCCGTC 57.070 47.368 0.00 0.00 0.00 4.79
543 551 5.677319 AACGAACCATCATCCTAGAGAAA 57.323 39.130 0.00 0.00 0.00 2.52
562 570 1.878953 AGTCACCAAAGCCACTAACG 58.121 50.000 0.00 0.00 0.00 3.18
570 578 0.804989 CGGATGGAAGTCACCAAAGC 59.195 55.000 0.00 0.00 43.47 3.51
572 580 1.418264 TCACGGATGGAAGTCACCAAA 59.582 47.619 0.00 0.00 43.47 3.28
583 591 2.813754 AGTTGTTGTTGATCACGGATGG 59.186 45.455 0.00 0.00 0.00 3.51
586 594 2.217750 CCAGTTGTTGTTGATCACGGA 58.782 47.619 0.00 0.00 0.00 4.69
607 615 1.726791 CTGTCCAATTGTTCGAGTCGG 59.273 52.381 13.54 0.00 0.00 4.79
608 616 1.726791 CCTGTCCAATTGTTCGAGTCG 59.273 52.381 6.09 6.09 0.00 4.18
611 619 2.160417 GCTTCCTGTCCAATTGTTCGAG 59.840 50.000 4.43 0.00 0.00 4.04
615 623 1.615392 GCTGCTTCCTGTCCAATTGTT 59.385 47.619 4.43 0.00 0.00 2.83
620 628 1.601759 GCTGCTGCTTCCTGTCCAA 60.602 57.895 8.53 0.00 36.03 3.53
625 633 1.579932 CTGTTGCTGCTGCTTCCTG 59.420 57.895 17.00 4.98 40.48 3.86
643 651 0.875474 TTTCGAACGGACCAACGACC 60.875 55.000 0.00 0.00 37.61 4.79
654 662 4.849926 TGATCGTCTTCTTAGTTTCGAACG 59.150 41.667 0.00 0.00 36.23 3.95
658 666 5.583495 AGGATGATCGTCTTCTTAGTTTCG 58.417 41.667 14.50 0.00 0.00 3.46
660 668 6.378564 TCTGAGGATGATCGTCTTCTTAGTTT 59.621 38.462 23.11 0.00 32.87 2.66
661 669 5.888724 TCTGAGGATGATCGTCTTCTTAGTT 59.111 40.000 23.11 0.00 32.87 2.24
663 671 5.762711 TCTCTGAGGATGATCGTCTTCTTAG 59.237 44.000 23.11 19.38 32.87 2.18
664 672 5.529430 GTCTCTGAGGATGATCGTCTTCTTA 59.471 44.000 23.11 12.78 32.87 2.10
671 679 2.092158 TGAGGTCTCTGAGGATGATCGT 60.092 50.000 4.59 0.00 0.00 3.73
729 854 7.386848 TCCGTACAAACTCTCTTCAAAATAAGG 59.613 37.037 0.00 0.00 0.00 2.69
753 886 3.405831 TGATCCATCGAGCAAATCATCC 58.594 45.455 0.00 0.00 29.60 3.51
796 929 9.629649 TTATATTATGGGATGAAGGGAGTACTT 57.370 33.333 0.00 0.00 0.00 2.24
797 930 9.273137 CTTATATTATGGGATGAAGGGAGTACT 57.727 37.037 0.00 0.00 0.00 2.73
798 931 9.268282 TCTTATATTATGGGATGAAGGGAGTAC 57.732 37.037 0.00 0.00 0.00 2.73
799 932 9.494055 CTCTTATATTATGGGATGAAGGGAGTA 57.506 37.037 0.00 0.00 0.00 2.59
803 936 6.962182 TGCTCTTATATTATGGGATGAAGGG 58.038 40.000 0.00 0.00 0.00 3.95
804 937 7.628234 ACTGCTCTTATATTATGGGATGAAGG 58.372 38.462 0.00 0.00 0.00 3.46
806 939 9.866655 AAAACTGCTCTTATATTATGGGATGAA 57.133 29.630 0.00 0.00 0.00 2.57
820 953 9.991906 ACTACACTAATGTAAAAACTGCTCTTA 57.008 29.630 0.00 0.00 40.84 2.10
821 954 8.774586 CACTACACTAATGTAAAAACTGCTCTT 58.225 33.333 0.00 0.00 40.84 2.85
822 955 7.931948 ACACTACACTAATGTAAAAACTGCTCT 59.068 33.333 0.00 0.00 40.84 4.09
823 956 8.084590 ACACTACACTAATGTAAAAACTGCTC 57.915 34.615 0.00 0.00 40.84 4.26
824 957 8.446599 AACACTACACTAATGTAAAAACTGCT 57.553 30.769 0.00 0.00 40.84 4.24
831 964 9.649024 GCGTTTTTAACACTACACTAATGTAAA 57.351 29.630 0.00 0.00 40.84 2.01
832 965 9.044150 AGCGTTTTTAACACTACACTAATGTAA 57.956 29.630 0.00 0.00 40.84 2.41
833 966 8.592105 AGCGTTTTTAACACTACACTAATGTA 57.408 30.769 0.00 0.00 40.48 2.29
834 967 7.440255 AGAGCGTTTTTAACACTACACTAATGT 59.560 33.333 0.00 0.00 43.30 2.71
835 968 7.793902 AGAGCGTTTTTAACACTACACTAATG 58.206 34.615 0.00 0.00 0.00 1.90
836 969 7.958053 AGAGCGTTTTTAACACTACACTAAT 57.042 32.000 0.00 0.00 0.00 1.73
837 970 7.775397 AAGAGCGTTTTTAACACTACACTAA 57.225 32.000 0.00 0.00 0.00 2.24
839 972 7.958053 ATAAGAGCGTTTTTAACACTACACT 57.042 32.000 0.00 0.00 0.00 3.55
849 982 8.767085 CCGTTCCATAATATAAGAGCGTTTTTA 58.233 33.333 7.53 0.00 32.01 1.52
850 983 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
851 984 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
852 985 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
853 986 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
854 987 5.336531 CCTCCGTTCCATAATATAAGAGCGT 60.337 44.000 7.53 0.00 32.01 5.07
855 988 5.103000 CCTCCGTTCCATAATATAAGAGCG 58.897 45.833 3.06 3.06 33.46 5.03
856 989 6.038997 ACCTCCGTTCCATAATATAAGAGC 57.961 41.667 0.00 0.00 0.00 4.09
857 990 8.350852 ACTACCTCCGTTCCATAATATAAGAG 57.649 38.462 0.00 0.00 0.00 2.85
858 991 9.812347 TTACTACCTCCGTTCCATAATATAAGA 57.188 33.333 0.00 0.00 0.00 2.10
859 992 9.852091 GTTACTACCTCCGTTCCATAATATAAG 57.148 37.037 0.00 0.00 0.00 1.73
860 993 9.592196 AGTTACTACCTCCGTTCCATAATATAA 57.408 33.333 0.00 0.00 0.00 0.98
861 994 9.592196 AAGTTACTACCTCCGTTCCATAATATA 57.408 33.333 0.00 0.00 0.00 0.86
862 995 8.365647 CAAGTTACTACCTCCGTTCCATAATAT 58.634 37.037 0.00 0.00 0.00 1.28
863 996 7.342799 ACAAGTTACTACCTCCGTTCCATAATA 59.657 37.037 0.00 0.00 0.00 0.98
864 997 6.155737 ACAAGTTACTACCTCCGTTCCATAAT 59.844 38.462 0.00 0.00 0.00 1.28
865 998 5.481473 ACAAGTTACTACCTCCGTTCCATAA 59.519 40.000 0.00 0.00 0.00 1.90
866 999 5.018809 ACAAGTTACTACCTCCGTTCCATA 58.981 41.667 0.00 0.00 0.00 2.74
867 1000 3.836562 ACAAGTTACTACCTCCGTTCCAT 59.163 43.478 0.00 0.00 0.00 3.41
868 1001 3.233507 ACAAGTTACTACCTCCGTTCCA 58.766 45.455 0.00 0.00 0.00 3.53
869 1002 3.949842 ACAAGTTACTACCTCCGTTCC 57.050 47.619 0.00 0.00 0.00 3.62
870 1003 7.895975 AATAAACAAGTTACTACCTCCGTTC 57.104 36.000 0.00 0.00 0.00 3.95
871 1004 8.681486 AAAATAAACAAGTTACTACCTCCGTT 57.319 30.769 0.00 0.00 0.00 4.44
872 1005 8.681486 AAAAATAAACAAGTTACTACCTCCGT 57.319 30.769 0.00 0.00 0.00 4.69
899 1033 9.764363 AAAGGAAAATAAAACTGTGAATTCTCC 57.236 29.630 7.05 0.45 0.00 3.71
1117 3273 0.834612 TGGGACGATTGGGTATCACC 59.165 55.000 0.00 0.00 37.60 4.02
1118 3274 1.760613 TCTGGGACGATTGGGTATCAC 59.239 52.381 0.00 0.00 32.45 3.06
1119 3275 2.039418 CTCTGGGACGATTGGGTATCA 58.961 52.381 0.00 0.00 32.45 2.15
1120 3276 2.036089 GTCTCTGGGACGATTGGGTATC 59.964 54.545 0.00 0.00 35.07 2.24
1121 3277 2.040178 GTCTCTGGGACGATTGGGTAT 58.960 52.381 0.00 0.00 35.07 2.73
1122 3278 1.481871 GTCTCTGGGACGATTGGGTA 58.518 55.000 0.00 0.00 35.07 3.69
1123 3279 1.265454 GGTCTCTGGGACGATTGGGT 61.265 60.000 0.83 0.00 45.35 4.51
1124 3280 1.522569 GGTCTCTGGGACGATTGGG 59.477 63.158 0.83 0.00 45.35 4.12
1133 3289 2.283966 ACGGTCTGGGTCTCTGGG 60.284 66.667 0.00 0.00 0.00 4.45
1134 3290 1.304547 AGACGGTCTGGGTCTCTGG 60.305 63.158 10.41 0.00 40.63 3.86
1135 3291 4.425099 AGACGGTCTGGGTCTCTG 57.575 61.111 10.41 0.00 40.63 3.35
1199 3355 3.609703 GCCAGGAGAAGAGCGAGA 58.390 61.111 0.00 0.00 0.00 4.04
1382 3538 3.890705 CACATGTCGTCGAGCGCG 61.891 66.667 2.41 2.41 41.07 6.86
1498 3654 1.960994 GAAGGCGTCGAAAGCAGAGC 61.961 60.000 14.80 0.29 36.08 4.09
1506 3662 3.702048 CCAGGGGAAGGCGTCGAA 61.702 66.667 0.00 0.00 0.00 3.71
1521 3677 2.448931 AACGACCCCTCCCAACCA 60.449 61.111 0.00 0.00 0.00 3.67
1524 3680 1.279846 GAATACAACGACCCCTCCCAA 59.720 52.381 0.00 0.00 0.00 4.12
1533 3689 3.106672 CCAGCGAGTAGAATACAACGAC 58.893 50.000 0.00 0.00 46.26 4.34
1583 3742 1.204228 ACACGACAGTACAACGCACG 61.204 55.000 0.00 0.00 0.00 5.34
1675 3845 4.906664 AGATAGAAGGCAAGTGATCCTGAT 59.093 41.667 0.00 0.00 32.00 2.90
1678 3848 4.718774 TGAAGATAGAAGGCAAGTGATCCT 59.281 41.667 0.00 0.00 0.00 3.24
1694 3864 4.870221 TCGATCGAAACGAGTGAAGATA 57.130 40.909 16.99 0.00 39.91 1.98
1724 3894 4.507756 CGACGCAAGAAAATGGATGATCTA 59.492 41.667 0.00 0.00 43.62 1.98
1746 3916 3.424962 GCTGATTCGGAAAAGAAACCTCG 60.425 47.826 7.71 0.00 33.43 4.63
1802 3972 5.308825 AGATTTATATCTGGGTCCTTTGCG 58.691 41.667 0.00 0.00 39.66 4.85
1860 4031 8.816640 AGTGAAAAATTGCCATGTAGTAAAAG 57.183 30.769 0.00 0.00 0.00 2.27
1893 4065 1.118356 AGTGAAAAATTGCCCCCGCA 61.118 50.000 0.00 0.00 45.49 5.69
1894 4066 0.034756 AAGTGAAAAATTGCCCCCGC 59.965 50.000 0.00 0.00 0.00 6.13
1895 4067 2.542020 AAAGTGAAAAATTGCCCCCG 57.458 45.000 0.00 0.00 0.00 5.73
1896 4068 5.590663 TGTTTTAAAGTGAAAAATTGCCCCC 59.409 36.000 0.00 0.00 30.36 5.40
1897 4069 6.685527 TGTTTTAAAGTGAAAAATTGCCCC 57.314 33.333 0.00 0.00 30.36 5.80
1898 4070 8.831550 TGTATGTTTTAAAGTGAAAAATTGCCC 58.168 29.630 0.00 0.00 30.36 5.36
1946 4118 7.087409 TGTGATGCGAAAATAGATGAAATGT 57.913 32.000 0.00 0.00 0.00 2.71
1947 4119 7.699391 ACTTGTGATGCGAAAATAGATGAAATG 59.301 33.333 0.00 0.00 0.00 2.32
1961 4133 0.678950 TGACCAGACTTGTGATGCGA 59.321 50.000 0.00 0.00 0.00 5.10
2018 4190 7.911205 CGTTACTGTTGTTTTCAGGAAATGTTA 59.089 33.333 0.00 0.00 37.47 2.41
2113 5670 9.869844 CTTGATAGTTGATGAATAAATCGGAAC 57.130 33.333 0.00 0.00 0.00 3.62
2180 5738 4.603131 AGTCGTTGGTAGGTGGTCTATAA 58.397 43.478 0.00 0.00 0.00 0.98
2196 5754 5.578005 TTGCTCTAGTGCTATTAGTCGTT 57.422 39.130 17.08 0.00 0.00 3.85
2230 5788 0.033090 GAAGGGACGAAGACAACGGT 59.967 55.000 0.00 0.00 34.93 4.83
2255 5814 3.878778 ACAATAAGATTTGCTCGGCTCT 58.121 40.909 0.00 0.00 0.00 4.09
2293 5853 0.535335 ATGTGGCCTTGTACGACGAT 59.465 50.000 3.32 0.00 0.00 3.73
2317 5878 2.664851 TTGTTCTCGTGCGCTGGG 60.665 61.111 9.73 0.27 0.00 4.45
2339 5901 3.930336 ACGCTTCTCTTCATTGATGACA 58.070 40.909 0.00 0.00 36.36 3.58
2387 5949 0.646381 TCGTTCGTTTGTGTTCGTGG 59.354 50.000 0.00 0.00 0.00 4.94
2421 5983 2.356125 CCTTTGTCTTCGGTGGATCCAT 60.356 50.000 19.62 0.00 35.57 3.41
2482 6044 0.104304 AATATCGTCGGAGGGTGTGC 59.896 55.000 0.00 0.00 0.00 4.57
2499 6061 3.306780 CCTGTCTCGGTGGTGTTTCTAAT 60.307 47.826 0.00 0.00 0.00 1.73
2524 6086 2.044758 GATAAGGTTCTCCCCGCCTTA 58.955 52.381 4.97 4.97 45.46 2.69
2562 6130 5.510430 TGTGTCCAGCTTAGAGAGATAAGA 58.490 41.667 0.00 0.00 35.19 2.10
2566 6134 4.323104 GGTTTGTGTCCAGCTTAGAGAGAT 60.323 45.833 0.00 0.00 0.00 2.75
2574 6142 3.561143 TGTTATGGTTTGTGTCCAGCTT 58.439 40.909 0.00 0.00 38.42 3.74
2637 6217 2.662596 GTCATGGAGGCGTGGTGA 59.337 61.111 0.00 0.00 0.00 4.02
2653 6233 2.236395 CCTCGTCTCATGGTTTTAGGGT 59.764 50.000 0.00 0.00 0.00 4.34
2660 6240 2.100989 GGTCTACCTCGTCTCATGGTT 58.899 52.381 0.00 0.00 35.48 3.67
2698 6280 2.106511 TGGCTAGAGTTTCTTGTGCCTT 59.893 45.455 14.07 0.00 37.20 4.35
2712 6294 4.366267 AGAAAGAGGATCCTTTGGCTAGA 58.634 43.478 17.42 0.00 36.58 2.43
2744 6327 2.661594 GGTGTGCATTCGTTTCTTTCC 58.338 47.619 0.00 0.00 0.00 3.13
2753 6336 2.330231 ATTTGAACGGTGTGCATTCG 57.670 45.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.