Multiple sequence alignment - TraesCS3D01G282400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G282400 chr3D 100.000 2681 0 0 1 2681 390415262 390412582 0.000000e+00 4951
1 TraesCS3D01G282400 chr3D 99.211 380 3 0 1718 2097 560406 560785 0.000000e+00 686
2 TraesCS3D01G282400 chr3D 99.211 380 3 0 1718 2097 576620 576999 0.000000e+00 686
3 TraesCS3D01G282400 chr3D 98.158 380 7 0 1718 2097 119412303 119412682 0.000000e+00 664
4 TraesCS3D01G282400 chr3B 89.339 1135 61 17 606 1717 507499488 507498391 0.000000e+00 1371
5 TraesCS3D01G282400 chr3B 87.113 613 29 13 2098 2681 507498398 507497807 0.000000e+00 649
6 TraesCS3D01G282400 chr3B 92.982 285 17 3 1 285 507500584 507500303 1.920000e-111 412
7 TraesCS3D01G282400 chr3A 92.147 955 39 10 763 1717 510831578 510830660 0.000000e+00 1315
8 TraesCS3D01G282400 chr3A 90.502 737 61 5 1 731 510832307 510831574 0.000000e+00 965
9 TraesCS3D01G282400 chr3A 87.869 610 29 16 2098 2681 510830667 510830077 0.000000e+00 675
10 TraesCS3D01G282400 chr7D 98.958 384 4 0 1714 2097 124296486 124296103 0.000000e+00 688
11 TraesCS3D01G282400 chr7D 98.425 381 6 0 1717 2097 568273073 568272693 0.000000e+00 671
12 TraesCS3D01G282400 chr7D 98.168 382 7 0 1717 2098 90588732 90588351 0.000000e+00 667
13 TraesCS3D01G282400 chr5D 98.163 381 7 0 1718 2098 42869617 42869237 0.000000e+00 665
14 TraesCS3D01G282400 chr5D 97.638 381 9 0 1717 2097 32931682 32932062 0.000000e+00 654
15 TraesCS3D01G282400 chr1D 98.158 380 7 0 1718 2097 18201486 18201107 0.000000e+00 664


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G282400 chr3D 390412582 390415262 2680 True 4951.000000 4951 100.000000 1 2681 1 chr3D.!!$R1 2680
1 TraesCS3D01G282400 chr3B 507497807 507500584 2777 True 810.666667 1371 89.811333 1 2681 3 chr3B.!!$R1 2680
2 TraesCS3D01G282400 chr3A 510830077 510832307 2230 True 985.000000 1315 90.172667 1 2681 3 chr3A.!!$R1 2680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.109039 GAGGTGGCTCTTCTCGTGAC 60.109 60.0 0.0 0.0 0.0 3.67 F
1313 1996 0.110486 AACATTTCCGCCTCCACAGT 59.890 50.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 2181 0.028505 CCAGCTTTCGGAATGCATCG 59.971 55.0 24.75 14.92 34.29 3.84 R
2229 2934 0.035343 TGTCACACCCGGTTGTCAAA 60.035 50.0 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 1.258445 TTCGGGAGGTGGCTCTTCTC 61.258 60.000 0.00 0.00 0.00 2.87
130 131 0.109039 GAGGTGGCTCTTCTCGTGAC 60.109 60.000 0.00 0.00 0.00 3.67
195 196 0.514691 GCGCTGAAAGGACTTGAGTG 59.485 55.000 0.00 0.00 0.00 3.51
204 205 5.012046 TGAAAGGACTTGAGTGCATAGAGAA 59.988 40.000 5.45 0.00 38.96 2.87
263 264 5.163519 CCAACATGGCTAGATCGGAAATTTT 60.164 40.000 0.00 0.00 0.00 1.82
292 293 2.303311 ACAAGTCTCTAAAGCCCAGTCC 59.697 50.000 0.00 0.00 0.00 3.85
309 310 4.401925 CAGTCCTCCATCTTTCTTTGGTT 58.598 43.478 0.00 0.00 34.48 3.67
311 312 4.829492 AGTCCTCCATCTTTCTTTGGTTTG 59.171 41.667 0.00 0.00 34.48 2.93
324 325 1.783071 TGGTTTGGTTGGTTTCTCCC 58.217 50.000 0.00 0.00 34.77 4.30
363 364 9.620259 GGACCTAGTTCTCTTTATCAATTTGAT 57.380 33.333 15.78 15.78 40.72 2.57
376 377 8.877864 TTATCAATTTGATTAACTCCACCAGT 57.122 30.769 16.62 0.00 38.26 4.00
379 380 8.279970 TCAATTTGATTAACTCCACCAGTATG 57.720 34.615 0.00 0.00 32.30 2.39
441 442 1.102809 TATCAAAGCAGGCCATGGCG 61.103 55.000 29.90 18.44 43.06 5.69
491 494 3.630312 TGCCGCCTTTATGTTAATCCTTC 59.370 43.478 0.00 0.00 0.00 3.46
497 500 6.094881 CGCCTTTATGTTAATCCTTCTTCCAA 59.905 38.462 0.00 0.00 0.00 3.53
516 519 6.874278 TCCAACCTTTGATGAGAATCTCTA 57.126 37.500 11.92 0.00 34.92 2.43
530 533 6.054860 AGAATCTCTAGCTAAAGTTTGGCA 57.945 37.500 23.76 10.41 39.92 4.92
532 535 4.891992 TCTCTAGCTAAAGTTTGGCAGT 57.108 40.909 23.76 8.58 39.92 4.40
541 545 6.096282 AGCTAAAGTTTGGCAGTAGTTTTTGA 59.904 34.615 23.76 0.00 39.92 2.69
633 1293 7.039082 TGCAGATTTTGGTTTCTTTTAGCCTAT 60.039 33.333 0.00 0.00 0.00 2.57
684 1344 4.867608 CCGAAGATCCTTGAAAGAGAAGAC 59.132 45.833 0.00 0.00 0.00 3.01
746 1406 8.499403 AATAACTCTGAAAGGAGATGCTTTAC 57.501 34.615 0.00 0.00 37.13 2.01
849 1512 6.704493 AGTTTCAGTTCTTGCATTAACGAGTA 59.296 34.615 0.00 0.00 0.00 2.59
852 1515 6.220930 TCAGTTCTTGCATTAACGAGTAGTT 58.779 36.000 0.00 0.00 46.36 2.24
853 1516 6.365247 TCAGTTCTTGCATTAACGAGTAGTTC 59.635 38.462 0.00 0.00 43.06 3.01
854 1517 6.366332 CAGTTCTTGCATTAACGAGTAGTTCT 59.634 38.462 0.00 0.00 43.06 3.01
937 1608 2.079925 GGAAGCTTCACACATCACCTC 58.920 52.381 27.02 2.14 0.00 3.85
1035 1706 1.850345 TCCACTTTGGTGTCCCTTCTT 59.150 47.619 0.00 0.00 41.53 2.52
1113 1796 4.312152 ACCCCCGACGTCCTCCTT 62.312 66.667 10.58 0.00 0.00 3.36
1125 1808 3.710722 CTCCTTGCCTCACCCGCT 61.711 66.667 0.00 0.00 0.00 5.52
1203 1886 2.344441 CGGCGTGTACATAGTCTTTGTG 59.656 50.000 0.00 0.00 0.00 3.33
1305 1988 1.737735 GGCAAGCAACATTTCCGCC 60.738 57.895 0.00 0.00 0.00 6.13
1313 1996 0.110486 AACATTTCCGCCTCCACAGT 59.890 50.000 0.00 0.00 0.00 3.55
1324 2007 0.321387 CTCCACAGTGCACAGCATCT 60.321 55.000 21.04 0.00 41.91 2.90
1411 2094 4.017126 CCATGATCTACCACTATAGCGGA 58.983 47.826 13.84 0.00 0.00 5.54
1447 2130 1.003928 AGGCTCACATGTGATCAAGCA 59.996 47.619 28.00 4.99 39.13 3.91
1478 2161 1.084370 AAGTGAGCGCGGCTGATTAC 61.084 55.000 8.83 0.00 39.88 1.89
1498 2181 1.235724 CCACCAAGTTTCTCCCGTTC 58.764 55.000 0.00 0.00 0.00 3.95
1508 2191 0.179084 TCTCCCGTTCGATGCATTCC 60.179 55.000 0.00 0.00 0.00 3.01
1521 2204 0.598065 GCATTCCGAAAGCTGGTGTT 59.402 50.000 1.06 0.00 0.00 3.32
1536 2219 0.109039 GTGTTGGTTTTGCGTGTGGT 60.109 50.000 0.00 0.00 0.00 4.16
1538 2221 0.995728 GTTGGTTTTGCGTGTGGTTG 59.004 50.000 0.00 0.00 0.00 3.77
1539 2222 0.737715 TTGGTTTTGCGTGTGGTTGC 60.738 50.000 0.00 0.00 0.00 4.17
1540 2223 1.153745 GGTTTTGCGTGTGGTTGCA 60.154 52.632 0.00 0.00 39.81 4.08
1541 2224 0.529555 GGTTTTGCGTGTGGTTGCAT 60.530 50.000 0.00 0.00 41.42 3.96
1542 2225 0.576328 GTTTTGCGTGTGGTTGCATG 59.424 50.000 0.00 0.00 41.42 4.06
1543 2226 0.529337 TTTTGCGTGTGGTTGCATGG 60.529 50.000 0.00 0.00 41.42 3.66
1544 2227 1.670949 TTTGCGTGTGGTTGCATGGT 61.671 50.000 0.00 0.00 41.42 3.55
1545 2228 1.670949 TTGCGTGTGGTTGCATGGTT 61.671 50.000 0.00 0.00 41.42 3.67
1546 2229 1.067250 GCGTGTGGTTGCATGGTTT 59.933 52.632 0.00 0.00 0.00 3.27
1547 2230 0.529555 GCGTGTGGTTGCATGGTTTT 60.530 50.000 0.00 0.00 0.00 2.43
1548 2231 1.486439 CGTGTGGTTGCATGGTTTTC 58.514 50.000 0.00 0.00 0.00 2.29
1549 2232 1.066908 CGTGTGGTTGCATGGTTTTCT 59.933 47.619 0.00 0.00 0.00 2.52
1550 2233 2.481104 CGTGTGGTTGCATGGTTTTCTT 60.481 45.455 0.00 0.00 0.00 2.52
1551 2234 3.530535 GTGTGGTTGCATGGTTTTCTTT 58.469 40.909 0.00 0.00 0.00 2.52
1552 2235 3.938334 GTGTGGTTGCATGGTTTTCTTTT 59.062 39.130 0.00 0.00 0.00 2.27
1553 2236 4.394610 GTGTGGTTGCATGGTTTTCTTTTT 59.605 37.500 0.00 0.00 0.00 1.94
1554 2237 4.633565 TGTGGTTGCATGGTTTTCTTTTTC 59.366 37.500 0.00 0.00 0.00 2.29
1555 2238 4.875536 GTGGTTGCATGGTTTTCTTTTTCT 59.124 37.500 0.00 0.00 0.00 2.52
1556 2239 5.353956 GTGGTTGCATGGTTTTCTTTTTCTT 59.646 36.000 0.00 0.00 0.00 2.52
1557 2240 5.942826 TGGTTGCATGGTTTTCTTTTTCTTT 59.057 32.000 0.00 0.00 0.00 2.52
1558 2241 6.432472 TGGTTGCATGGTTTTCTTTTTCTTTT 59.568 30.769 0.00 0.00 0.00 2.27
1559 2242 7.040132 TGGTTGCATGGTTTTCTTTTTCTTTTT 60.040 29.630 0.00 0.00 0.00 1.94
1639 2322 3.423571 GACAAGACGTACTATGTGGACG 58.576 50.000 4.13 4.13 42.22 4.79
1641 2324 3.503363 ACAAGACGTACTATGTGGACGAA 59.497 43.478 11.43 0.00 39.81 3.85
1673 2356 3.854666 TGCCTCGATTCTTTGAAGAGAG 58.145 45.455 0.00 0.00 36.22 3.20
1702 2385 6.980593 TGAAGATCAAATGTTTACCCAACTG 58.019 36.000 0.00 0.00 36.21 3.16
1705 2388 6.245408 AGATCAAATGTTTACCCAACTGCTA 58.755 36.000 0.00 0.00 36.21 3.49
1706 2389 6.891908 AGATCAAATGTTTACCCAACTGCTAT 59.108 34.615 0.00 0.00 36.21 2.97
1707 2390 6.509418 TCAAATGTTTACCCAACTGCTATC 57.491 37.500 0.00 0.00 36.21 2.08
1710 2393 4.634012 TGTTTACCCAACTGCTATCACT 57.366 40.909 0.00 0.00 36.21 3.41
1712 2395 5.484715 TGTTTACCCAACTGCTATCACTAC 58.515 41.667 0.00 0.00 36.21 2.73
1713 2396 2.961526 ACCCAACTGCTATCACTACG 57.038 50.000 0.00 0.00 0.00 3.51
1714 2397 2.453521 ACCCAACTGCTATCACTACGA 58.546 47.619 0.00 0.00 0.00 3.43
1715 2398 2.165845 ACCCAACTGCTATCACTACGAC 59.834 50.000 0.00 0.00 0.00 4.34
1716 2399 2.481449 CCCAACTGCTATCACTACGACC 60.481 54.545 0.00 0.00 0.00 4.79
1717 2400 2.481449 CCAACTGCTATCACTACGACCC 60.481 54.545 0.00 0.00 0.00 4.46
1718 2401 2.139323 ACTGCTATCACTACGACCCA 57.861 50.000 0.00 0.00 0.00 4.51
1719 2402 2.453521 ACTGCTATCACTACGACCCAA 58.546 47.619 0.00 0.00 0.00 4.12
1720 2403 2.427453 ACTGCTATCACTACGACCCAAG 59.573 50.000 0.00 0.00 0.00 3.61
1721 2404 1.136305 TGCTATCACTACGACCCAAGC 59.864 52.381 0.00 0.00 0.00 4.01
1722 2405 1.409427 GCTATCACTACGACCCAAGCT 59.591 52.381 0.00 0.00 0.00 3.74
1723 2406 2.159085 GCTATCACTACGACCCAAGCTT 60.159 50.000 0.00 0.00 0.00 3.74
1724 2407 3.679083 GCTATCACTACGACCCAAGCTTT 60.679 47.826 0.00 0.00 0.00 3.51
1725 2408 2.922740 TCACTACGACCCAAGCTTTT 57.077 45.000 0.00 0.00 0.00 2.27
1726 2409 2.489971 TCACTACGACCCAAGCTTTTG 58.510 47.619 0.00 0.00 0.00 2.44
1727 2410 1.535462 CACTACGACCCAAGCTTTTGG 59.465 52.381 9.74 9.74 41.72 3.28
1728 2411 1.142262 ACTACGACCCAAGCTTTTGGT 59.858 47.619 15.64 15.64 40.46 3.67
1729 2412 2.227194 CTACGACCCAAGCTTTTGGTT 58.773 47.619 16.55 6.61 40.46 3.67
1730 2413 2.351706 ACGACCCAAGCTTTTGGTTA 57.648 45.000 16.55 0.00 40.46 2.85
1731 2414 1.951602 ACGACCCAAGCTTTTGGTTAC 59.048 47.619 16.55 6.30 40.46 2.50
1732 2415 1.268625 CGACCCAAGCTTTTGGTTACC 59.731 52.381 16.55 0.00 40.46 2.85
1733 2416 1.268625 GACCCAAGCTTTTGGTTACCG 59.731 52.381 16.55 0.00 40.46 4.02
1734 2417 1.133730 ACCCAAGCTTTTGGTTACCGA 60.134 47.619 10.95 0.00 40.46 4.69
1735 2418 1.957877 CCCAAGCTTTTGGTTACCGAA 59.042 47.619 0.00 0.00 40.46 4.30
1736 2419 2.560981 CCCAAGCTTTTGGTTACCGAAT 59.439 45.455 4.72 0.00 40.46 3.34
1737 2420 3.574614 CCAAGCTTTTGGTTACCGAATG 58.425 45.455 4.72 8.73 38.17 2.67
1738 2421 3.254657 CCAAGCTTTTGGTTACCGAATGA 59.745 43.478 18.12 0.00 38.17 2.57
1739 2422 4.475944 CAAGCTTTTGGTTACCGAATGAG 58.524 43.478 18.12 9.42 38.17 2.90
1740 2423 3.081804 AGCTTTTGGTTACCGAATGAGG 58.918 45.455 18.12 5.87 37.30 3.86
1741 2424 2.415491 GCTTTTGGTTACCGAATGAGGC 60.415 50.000 18.12 10.82 33.69 4.70
1742 2425 2.570415 TTTGGTTACCGAATGAGGCA 57.430 45.000 0.00 0.00 33.69 4.75
1743 2426 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
1744 2427 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
1745 2428 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
1746 2429 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
1747 2430 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
1748 2431 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
1749 2432 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
1750 2433 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
1751 2434 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
1752 2435 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
1753 2436 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
1754 2437 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
1755 2438 2.122783 TGAGGCAATTTTACCGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
1756 2439 1.353022 TGAGGCAATTTTACCGAGGGT 59.647 47.619 0.00 0.00 40.16 4.34
1757 2440 1.743394 GAGGCAATTTTACCGAGGGTG 59.257 52.381 0.00 0.00 36.19 4.61
1758 2441 1.353022 AGGCAATTTTACCGAGGGTGA 59.647 47.619 0.00 0.00 36.19 4.02
1759 2442 1.471287 GGCAATTTTACCGAGGGTGAC 59.529 52.381 0.00 0.00 36.19 3.67
1760 2443 2.433436 GCAATTTTACCGAGGGTGACT 58.567 47.619 0.00 0.00 36.19 3.41
1761 2444 2.161609 GCAATTTTACCGAGGGTGACTG 59.838 50.000 0.00 0.00 36.19 3.51
1762 2445 3.670625 CAATTTTACCGAGGGTGACTGA 58.329 45.455 0.00 0.00 36.19 3.41
1763 2446 4.261801 CAATTTTACCGAGGGTGACTGAT 58.738 43.478 0.00 0.00 36.19 2.90
1764 2447 5.424757 CAATTTTACCGAGGGTGACTGATA 58.575 41.667 0.00 0.00 36.19 2.15
1765 2448 5.687166 ATTTTACCGAGGGTGACTGATAA 57.313 39.130 0.00 0.00 36.19 1.75
1766 2449 5.486735 TTTTACCGAGGGTGACTGATAAA 57.513 39.130 0.00 0.00 36.19 1.40
1767 2450 5.687166 TTTACCGAGGGTGACTGATAAAT 57.313 39.130 0.00 0.00 36.19 1.40
1768 2451 3.543680 ACCGAGGGTGACTGATAAATG 57.456 47.619 0.00 0.00 32.98 2.32
1769 2452 2.838202 ACCGAGGGTGACTGATAAATGT 59.162 45.455 0.00 0.00 32.98 2.71
1770 2453 3.198068 CCGAGGGTGACTGATAAATGTG 58.802 50.000 0.00 0.00 0.00 3.21
1771 2454 3.198068 CGAGGGTGACTGATAAATGTGG 58.802 50.000 0.00 0.00 0.00 4.17
1772 2455 3.369471 CGAGGGTGACTGATAAATGTGGT 60.369 47.826 0.00 0.00 0.00 4.16
1773 2456 4.589908 GAGGGTGACTGATAAATGTGGTT 58.410 43.478 0.00 0.00 0.00 3.67
1774 2457 5.625886 CGAGGGTGACTGATAAATGTGGTTA 60.626 44.000 0.00 0.00 0.00 2.85
1775 2458 5.497474 AGGGTGACTGATAAATGTGGTTAC 58.503 41.667 0.00 0.00 0.00 2.50
1776 2459 4.638865 GGGTGACTGATAAATGTGGTTACC 59.361 45.833 0.00 0.00 36.33 2.85
1777 2460 5.250200 GGTGACTGATAAATGTGGTTACCA 58.750 41.667 0.00 0.00 36.82 3.25
1807 2490 4.326504 GGGAAATACCGAGAAATACCGA 57.673 45.455 0.00 0.00 40.11 4.69
1808 2491 4.304939 GGGAAATACCGAGAAATACCGAG 58.695 47.826 0.00 0.00 40.11 4.63
1809 2492 4.038402 GGGAAATACCGAGAAATACCGAGA 59.962 45.833 0.00 0.00 40.11 4.04
1810 2493 5.452356 GGGAAATACCGAGAAATACCGAGAA 60.452 44.000 0.00 0.00 40.11 2.87
1811 2494 6.221659 GGAAATACCGAGAAATACCGAGAAT 58.778 40.000 0.00 0.00 0.00 2.40
1812 2495 7.373493 GGAAATACCGAGAAATACCGAGAATA 58.627 38.462 0.00 0.00 0.00 1.75
1813 2496 8.033626 GGAAATACCGAGAAATACCGAGAATAT 58.966 37.037 0.00 0.00 0.00 1.28
1814 2497 9.420551 GAAATACCGAGAAATACCGAGAATATT 57.579 33.333 0.00 0.00 0.00 1.28
1815 2498 9.774413 AAATACCGAGAAATACCGAGAATATTT 57.226 29.630 0.00 0.00 35.43 1.40
1816 2499 8.983307 ATACCGAGAAATACCGAGAATATTTC 57.017 34.615 8.71 8.71 44.27 2.17
1817 2500 5.919141 ACCGAGAAATACCGAGAATATTTCG 59.081 40.000 10.33 10.96 46.64 3.46
1818 2501 6.147581 CCGAGAAATACCGAGAATATTTCGA 58.852 40.000 16.51 0.00 46.64 3.71
1819 2502 6.639686 CCGAGAAATACCGAGAATATTTCGAA 59.360 38.462 16.51 0.00 46.64 3.71
1820 2503 7.358187 CCGAGAAATACCGAGAATATTTCGAAC 60.358 40.741 16.51 0.00 46.64 3.95
1821 2504 7.390918 AGAAATACCGAGAATATTTCGAACG 57.609 36.000 16.51 0.00 46.64 3.95
1822 2505 7.198390 AGAAATACCGAGAATATTTCGAACGA 58.802 34.615 16.51 0.00 46.64 3.85
1823 2506 7.703621 AGAAATACCGAGAATATTTCGAACGAA 59.296 33.333 16.51 5.53 46.64 3.85
1824 2507 7.941795 AATACCGAGAATATTTCGAACGAAT 57.058 32.000 16.51 0.00 40.36 3.34
1825 2508 7.941795 ATACCGAGAATATTTCGAACGAATT 57.058 32.000 16.51 9.48 40.36 2.17
1826 2509 6.657836 ACCGAGAATATTTCGAACGAATTT 57.342 33.333 16.51 5.50 40.36 1.82
1827 2510 7.068692 ACCGAGAATATTTCGAACGAATTTT 57.931 32.000 16.51 5.19 40.36 1.82
1828 2511 8.188531 ACCGAGAATATTTCGAACGAATTTTA 57.811 30.769 16.51 4.41 40.36 1.52
1829 2512 8.823818 ACCGAGAATATTTCGAACGAATTTTAT 58.176 29.630 16.51 4.20 40.36 1.40
1879 2562 6.826893 AATGAACGAACATTCAAACCAAAG 57.173 33.333 0.00 0.00 41.78 2.77
1880 2563 5.568685 TGAACGAACATTCAAACCAAAGA 57.431 34.783 0.00 0.00 35.65 2.52
1881 2564 5.336744 TGAACGAACATTCAAACCAAAGAC 58.663 37.500 0.00 0.00 35.65 3.01
1882 2565 4.301637 ACGAACATTCAAACCAAAGACC 57.698 40.909 0.00 0.00 0.00 3.85
1883 2566 3.951680 ACGAACATTCAAACCAAAGACCT 59.048 39.130 0.00 0.00 0.00 3.85
1884 2567 4.202010 ACGAACATTCAAACCAAAGACCTG 60.202 41.667 0.00 0.00 0.00 4.00
1885 2568 4.202010 CGAACATTCAAACCAAAGACCTGT 60.202 41.667 0.00 0.00 0.00 4.00
1886 2569 4.918810 ACATTCAAACCAAAGACCTGTC 57.081 40.909 0.00 0.00 0.00 3.51
1887 2570 4.277476 ACATTCAAACCAAAGACCTGTCA 58.723 39.130 0.00 0.00 0.00 3.58
1888 2571 4.709397 ACATTCAAACCAAAGACCTGTCAA 59.291 37.500 0.00 0.00 0.00 3.18
1889 2572 5.186797 ACATTCAAACCAAAGACCTGTCAAA 59.813 36.000 0.00 0.00 0.00 2.69
1890 2573 5.730296 TTCAAACCAAAGACCTGTCAAAA 57.270 34.783 0.00 0.00 0.00 2.44
1891 2574 5.066968 TCAAACCAAAGACCTGTCAAAAC 57.933 39.130 0.00 0.00 0.00 2.43
1892 2575 4.524714 TCAAACCAAAGACCTGTCAAAACA 59.475 37.500 0.00 0.00 0.00 2.83
1905 2588 3.630312 TGTCAAAACAGGAACTAGGTTGC 59.370 43.478 0.00 0.00 36.02 4.17
1906 2589 3.883489 GTCAAAACAGGAACTAGGTTGCT 59.117 43.478 0.00 0.00 44.62 3.91
1907 2590 5.061179 GTCAAAACAGGAACTAGGTTGCTA 58.939 41.667 4.28 0.00 42.02 3.49
1908 2591 5.705905 GTCAAAACAGGAACTAGGTTGCTAT 59.294 40.000 4.28 0.00 42.02 2.97
1909 2592 5.705441 TCAAAACAGGAACTAGGTTGCTATG 59.295 40.000 4.28 3.18 42.02 2.23
1910 2593 5.499004 AAACAGGAACTAGGTTGCTATGA 57.501 39.130 4.28 0.00 42.02 2.15
1911 2594 5.499004 AACAGGAACTAGGTTGCTATGAA 57.501 39.130 4.28 0.00 42.02 2.57
1912 2595 4.833390 ACAGGAACTAGGTTGCTATGAAC 58.167 43.478 4.28 0.00 42.02 3.18
1913 2596 4.286032 ACAGGAACTAGGTTGCTATGAACA 59.714 41.667 4.28 0.00 42.02 3.18
1914 2597 4.631813 CAGGAACTAGGTTGCTATGAACAC 59.368 45.833 4.28 0.00 42.02 3.32
1915 2598 3.617263 GGAACTAGGTTGCTATGAACACG 59.383 47.826 0.00 0.00 31.28 4.49
1916 2599 3.955650 ACTAGGTTGCTATGAACACGT 57.044 42.857 0.00 0.00 0.00 4.49
1917 2600 3.846360 ACTAGGTTGCTATGAACACGTC 58.154 45.455 0.00 0.00 0.00 4.34
1918 2601 2.831685 AGGTTGCTATGAACACGTCA 57.168 45.000 0.00 0.00 41.67 4.35
1919 2602 2.688507 AGGTTGCTATGAACACGTCAG 58.311 47.619 0.00 0.00 40.43 3.51
1920 2603 2.299013 AGGTTGCTATGAACACGTCAGA 59.701 45.455 0.00 0.00 40.43 3.27
1921 2604 3.064207 GGTTGCTATGAACACGTCAGAA 58.936 45.455 0.00 0.00 40.43 3.02
1922 2605 3.684788 GGTTGCTATGAACACGTCAGAAT 59.315 43.478 0.00 0.00 40.43 2.40
1923 2606 4.201724 GGTTGCTATGAACACGTCAGAATC 60.202 45.833 0.00 0.00 40.43 2.52
1924 2607 4.186856 TGCTATGAACACGTCAGAATCA 57.813 40.909 0.00 0.00 40.43 2.57
1925 2608 4.565022 TGCTATGAACACGTCAGAATCAA 58.435 39.130 0.00 0.00 40.43 2.57
1926 2609 4.388773 TGCTATGAACACGTCAGAATCAAC 59.611 41.667 0.00 0.00 40.43 3.18
1927 2610 4.627467 GCTATGAACACGTCAGAATCAACT 59.373 41.667 0.00 0.00 40.43 3.16
1928 2611 5.220303 GCTATGAACACGTCAGAATCAACTC 60.220 44.000 0.00 0.00 40.43 3.01
1929 2612 4.322080 TGAACACGTCAGAATCAACTCT 57.678 40.909 0.00 0.00 0.00 3.24
1930 2613 4.299155 TGAACACGTCAGAATCAACTCTC 58.701 43.478 0.00 0.00 0.00 3.20
1931 2614 3.305398 ACACGTCAGAATCAACTCTCC 57.695 47.619 0.00 0.00 0.00 3.71
1932 2615 2.894126 ACACGTCAGAATCAACTCTCCT 59.106 45.455 0.00 0.00 0.00 3.69
1933 2616 3.322254 ACACGTCAGAATCAACTCTCCTT 59.678 43.478 0.00 0.00 0.00 3.36
1934 2617 3.677121 CACGTCAGAATCAACTCTCCTTG 59.323 47.826 0.00 0.00 0.00 3.61
1935 2618 2.670414 CGTCAGAATCAACTCTCCTTGC 59.330 50.000 0.00 0.00 0.00 4.01
1936 2619 3.668447 GTCAGAATCAACTCTCCTTGCA 58.332 45.455 0.00 0.00 0.00 4.08
1937 2620 4.260170 GTCAGAATCAACTCTCCTTGCAT 58.740 43.478 0.00 0.00 0.00 3.96
1938 2621 4.699257 GTCAGAATCAACTCTCCTTGCATT 59.301 41.667 0.00 0.00 0.00 3.56
1939 2622 5.877012 GTCAGAATCAACTCTCCTTGCATTA 59.123 40.000 0.00 0.00 0.00 1.90
1940 2623 6.372659 GTCAGAATCAACTCTCCTTGCATTAA 59.627 38.462 0.00 0.00 0.00 1.40
1941 2624 7.066766 GTCAGAATCAACTCTCCTTGCATTAAT 59.933 37.037 0.00 0.00 0.00 1.40
1942 2625 7.613022 TCAGAATCAACTCTCCTTGCATTAATT 59.387 33.333 0.00 0.00 0.00 1.40
1943 2626 8.896744 CAGAATCAACTCTCCTTGCATTAATTA 58.103 33.333 0.00 0.00 0.00 1.40
1944 2627 9.118300 AGAATCAACTCTCCTTGCATTAATTAG 57.882 33.333 0.00 0.00 0.00 1.73
1945 2628 9.113838 GAATCAACTCTCCTTGCATTAATTAGA 57.886 33.333 0.00 0.00 0.00 2.10
1946 2629 9.638176 AATCAACTCTCCTTGCATTAATTAGAT 57.362 29.630 0.00 0.00 0.00 1.98
1947 2630 8.668510 TCAACTCTCCTTGCATTAATTAGATC 57.331 34.615 0.00 0.00 0.00 2.75
1948 2631 7.716998 TCAACTCTCCTTGCATTAATTAGATCC 59.283 37.037 0.00 0.00 0.00 3.36
1949 2632 7.385894 ACTCTCCTTGCATTAATTAGATCCT 57.614 36.000 0.00 0.00 0.00 3.24
1950 2633 8.497910 ACTCTCCTTGCATTAATTAGATCCTA 57.502 34.615 0.00 0.00 0.00 2.94
1951 2634 8.592809 ACTCTCCTTGCATTAATTAGATCCTAG 58.407 37.037 0.00 0.00 0.00 3.02
1952 2635 7.911651 TCTCCTTGCATTAATTAGATCCTAGG 58.088 38.462 0.82 0.82 0.00 3.02
1953 2636 6.476378 TCCTTGCATTAATTAGATCCTAGGC 58.524 40.000 2.96 0.00 0.00 3.93
1954 2637 6.044287 TCCTTGCATTAATTAGATCCTAGGCA 59.956 38.462 2.96 0.00 0.00 4.75
1955 2638 6.150140 CCTTGCATTAATTAGATCCTAGGCAC 59.850 42.308 2.96 0.00 0.00 5.01
1956 2639 6.439636 TGCATTAATTAGATCCTAGGCACT 57.560 37.500 2.96 8.28 46.37 4.40
1957 2640 6.841601 TGCATTAATTAGATCCTAGGCACTT 58.158 36.000 2.96 0.00 41.75 3.16
1958 2641 7.290061 TGCATTAATTAGATCCTAGGCACTTT 58.710 34.615 2.96 1.19 41.75 2.66
1959 2642 8.436778 TGCATTAATTAGATCCTAGGCACTTTA 58.563 33.333 2.96 0.29 41.75 1.85
1960 2643 8.722394 GCATTAATTAGATCCTAGGCACTTTAC 58.278 37.037 2.96 0.00 41.75 2.01
1964 2647 8.548880 AATTAGATCCTAGGCACTTTACTACA 57.451 34.615 2.96 0.00 41.75 2.74
1965 2648 7.966339 TTAGATCCTAGGCACTTTACTACAA 57.034 36.000 2.96 0.00 41.75 2.41
1966 2649 6.869206 AGATCCTAGGCACTTTACTACAAA 57.131 37.500 2.96 0.00 41.75 2.83
1967 2650 7.439108 AGATCCTAGGCACTTTACTACAAAT 57.561 36.000 2.96 0.00 41.75 2.32
1968 2651 7.501844 AGATCCTAGGCACTTTACTACAAATC 58.498 38.462 2.96 0.00 41.75 2.17
1969 2652 5.657474 TCCTAGGCACTTTACTACAAATCG 58.343 41.667 2.96 0.00 41.75 3.34
1970 2653 5.419788 TCCTAGGCACTTTACTACAAATCGA 59.580 40.000 2.96 0.00 41.75 3.59
1971 2654 5.749109 CCTAGGCACTTTACTACAAATCGAG 59.251 44.000 0.00 0.00 41.75 4.04
1972 2655 3.933332 AGGCACTTTACTACAAATCGAGC 59.067 43.478 0.00 0.00 27.25 5.03
1973 2656 3.241995 GGCACTTTACTACAAATCGAGCG 60.242 47.826 0.00 0.00 0.00 5.03
1974 2657 3.367025 GCACTTTACTACAAATCGAGCGT 59.633 43.478 0.00 0.00 0.00 5.07
1975 2658 4.143179 GCACTTTACTACAAATCGAGCGTT 60.143 41.667 0.00 0.00 0.00 4.84
1976 2659 5.061311 GCACTTTACTACAAATCGAGCGTTA 59.939 40.000 0.00 0.00 0.00 3.18
1977 2660 6.400303 GCACTTTACTACAAATCGAGCGTTAA 60.400 38.462 0.00 0.00 0.00 2.01
1978 2661 7.503991 CACTTTACTACAAATCGAGCGTTAAA 58.496 34.615 0.00 0.00 0.00 1.52
1979 2662 8.005466 CACTTTACTACAAATCGAGCGTTAAAA 58.995 33.333 0.00 0.00 0.00 1.52
1980 2663 8.715088 ACTTTACTACAAATCGAGCGTTAAAAT 58.285 29.630 0.00 0.00 0.00 1.82
1981 2664 9.537848 CTTTACTACAAATCGAGCGTTAAAATT 57.462 29.630 0.00 0.00 0.00 1.82
1982 2665 9.532697 TTTACTACAAATCGAGCGTTAAAATTC 57.467 29.630 0.00 0.00 0.00 2.17
1983 2666 7.124347 ACTACAAATCGAGCGTTAAAATTCA 57.876 32.000 0.00 0.00 0.00 2.57
1984 2667 7.577979 ACTACAAATCGAGCGTTAAAATTCAA 58.422 30.769 0.00 0.00 0.00 2.69
1985 2668 8.071368 ACTACAAATCGAGCGTTAAAATTCAAA 58.929 29.630 0.00 0.00 0.00 2.69
1986 2669 7.687005 ACAAATCGAGCGTTAAAATTCAAAA 57.313 28.000 0.00 0.00 0.00 2.44
1987 2670 8.293114 ACAAATCGAGCGTTAAAATTCAAAAT 57.707 26.923 0.00 0.00 0.00 1.82
1988 2671 8.760569 ACAAATCGAGCGTTAAAATTCAAAATT 58.239 25.926 0.00 0.00 0.00 1.82
1989 2672 9.579610 CAAATCGAGCGTTAAAATTCAAAATTT 57.420 25.926 0.00 0.00 0.00 1.82
1991 2674 9.791838 AATCGAGCGTTAAAATTCAAAATTTTC 57.208 25.926 12.31 1.63 33.73 2.29
1992 2675 8.341477 TCGAGCGTTAAAATTCAAAATTTTCA 57.659 26.923 12.31 1.71 33.73 2.69
1993 2676 8.808529 TCGAGCGTTAAAATTCAAAATTTTCAA 58.191 25.926 12.31 0.00 33.73 2.69
1994 2677 9.414834 CGAGCGTTAAAATTCAAAATTTTCAAA 57.585 25.926 12.31 0.00 33.73 2.69
2029 2712 5.554822 TTTTGCTCGGTATGTGGATTTAC 57.445 39.130 0.00 0.00 0.00 2.01
2030 2713 3.188159 TGCTCGGTATGTGGATTTACC 57.812 47.619 0.00 0.00 35.52 2.85
2035 2718 3.121738 GGTATGTGGATTTACCGAGGG 57.878 52.381 0.00 0.00 42.61 4.30
2036 2719 2.224450 GGTATGTGGATTTACCGAGGGG 60.224 54.545 0.00 0.00 42.61 4.79
2037 2720 0.182775 ATGTGGATTTACCGAGGGGC 59.817 55.000 0.00 0.00 42.61 5.80
2038 2721 1.202099 TGTGGATTTACCGAGGGGCA 61.202 55.000 0.00 0.00 42.61 5.36
2039 2722 0.746923 GTGGATTTACCGAGGGGCAC 60.747 60.000 0.00 0.00 42.61 5.01
2040 2723 1.523032 GGATTTACCGAGGGGCACG 60.523 63.158 0.00 0.00 36.48 5.34
2047 2730 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
2048 2731 1.219664 CGAGGGGCACGGAAATACA 59.780 57.895 0.00 0.00 0.00 2.29
2049 2732 1.087771 CGAGGGGCACGGAAATACAC 61.088 60.000 0.00 0.00 0.00 2.90
2050 2733 1.078708 AGGGGCACGGAAATACACG 60.079 57.895 0.00 0.00 0.00 4.49
2051 2734 2.110352 GGGGCACGGAAATACACGG 61.110 63.158 0.00 0.00 0.00 4.94
2052 2735 1.376295 GGGCACGGAAATACACGGT 60.376 57.895 0.00 0.00 0.00 4.83
2053 2736 0.108233 GGGCACGGAAATACACGGTA 60.108 55.000 0.00 0.00 0.00 4.02
2054 2737 1.675415 GGGCACGGAAATACACGGTAA 60.675 52.381 0.00 0.00 0.00 2.85
2055 2738 1.394572 GGCACGGAAATACACGGTAAC 59.605 52.381 0.00 0.00 0.00 2.50
2056 2739 1.394572 GCACGGAAATACACGGTAACC 59.605 52.381 0.00 0.00 0.00 2.85
2057 2740 2.686235 CACGGAAATACACGGTAACCA 58.314 47.619 0.00 0.00 0.00 3.67
2058 2741 3.264104 CACGGAAATACACGGTAACCAT 58.736 45.455 0.00 0.00 0.00 3.55
2059 2742 3.062909 CACGGAAATACACGGTAACCATG 59.937 47.826 0.00 0.00 0.00 3.66
2060 2743 2.610374 CGGAAATACACGGTAACCATGG 59.390 50.000 11.19 11.19 0.00 3.66
2061 2744 2.946990 GGAAATACACGGTAACCATGGG 59.053 50.000 18.09 0.00 0.00 4.00
2062 2745 3.370739 GGAAATACACGGTAACCATGGGA 60.371 47.826 18.09 0.00 0.00 4.37
2063 2746 4.263435 GAAATACACGGTAACCATGGGAA 58.737 43.478 18.09 0.00 0.00 3.97
2064 2747 4.304048 AATACACGGTAACCATGGGAAA 57.696 40.909 18.09 0.00 0.00 3.13
2065 2748 2.891191 ACACGGTAACCATGGGAAAT 57.109 45.000 18.09 1.59 0.00 2.17
2066 2749 2.718563 ACACGGTAACCATGGGAAATC 58.281 47.619 18.09 0.00 0.00 2.17
2067 2750 2.307686 ACACGGTAACCATGGGAAATCT 59.692 45.455 18.09 0.00 0.00 2.40
2068 2751 3.245122 ACACGGTAACCATGGGAAATCTT 60.245 43.478 18.09 2.18 0.00 2.40
2069 2752 3.128589 CACGGTAACCATGGGAAATCTTG 59.871 47.826 18.09 1.23 0.00 3.02
2070 2753 3.009695 ACGGTAACCATGGGAAATCTTGA 59.990 43.478 18.09 0.00 0.00 3.02
2071 2754 4.013728 CGGTAACCATGGGAAATCTTGAA 58.986 43.478 18.09 0.00 0.00 2.69
2072 2755 4.461081 CGGTAACCATGGGAAATCTTGAAA 59.539 41.667 18.09 0.00 0.00 2.69
2073 2756 5.127031 CGGTAACCATGGGAAATCTTGAAAT 59.873 40.000 18.09 0.00 0.00 2.17
2074 2757 6.350949 CGGTAACCATGGGAAATCTTGAAATT 60.351 38.462 18.09 0.00 0.00 1.82
2075 2758 7.394016 GGTAACCATGGGAAATCTTGAAATTT 58.606 34.615 18.09 0.00 0.00 1.82
2076 2759 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
2077 2760 5.723295 ACCATGGGAAATCTTGAAATTTCG 58.277 37.500 18.09 0.46 43.52 3.46
2078 2761 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
2079 2762 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
2080 2763 6.350445 CCATGGGAAATCTTGAAATTTCGACT 60.350 38.462 13.34 0.00 43.52 4.18
2081 2764 6.012658 TGGGAAATCTTGAAATTTCGACTG 57.987 37.500 13.34 1.46 43.52 3.51
2082 2765 5.048083 TGGGAAATCTTGAAATTTCGACTGG 60.048 40.000 13.34 0.77 43.52 4.00
2083 2766 5.048013 GGGAAATCTTGAAATTTCGACTGGT 60.048 40.000 13.34 0.00 43.52 4.00
2084 2767 6.150474 GGGAAATCTTGAAATTTCGACTGGTA 59.850 38.462 13.34 0.00 43.52 3.25
2085 2768 7.308951 GGGAAATCTTGAAATTTCGACTGGTAA 60.309 37.037 13.34 0.00 43.52 2.85
2086 2769 7.537649 GGAAATCTTGAAATTTCGACTGGTAAC 59.462 37.037 13.34 1.06 43.52 2.50
2087 2770 5.934935 TCTTGAAATTTCGACTGGTAACC 57.065 39.130 13.34 0.00 0.00 2.85
2088 2771 5.369833 TCTTGAAATTTCGACTGGTAACCA 58.630 37.500 13.34 0.00 0.00 3.67
2089 2772 5.823570 TCTTGAAATTTCGACTGGTAACCAA 59.176 36.000 13.34 0.00 30.80 3.67
2090 2773 6.319152 TCTTGAAATTTCGACTGGTAACCAAA 59.681 34.615 13.34 0.00 30.80 3.28
2091 2774 6.452494 TGAAATTTCGACTGGTAACCAAAA 57.548 33.333 13.34 0.00 30.80 2.44
2092 2775 6.267070 TGAAATTTCGACTGGTAACCAAAAC 58.733 36.000 13.34 0.00 30.80 2.43
2093 2776 4.841443 ATTTCGACTGGTAACCAAAACC 57.159 40.909 0.00 0.00 37.53 3.27
2094 2777 3.564053 TTCGACTGGTAACCAAAACCT 57.436 42.857 0.00 0.00 37.91 3.50
2095 2778 3.564053 TCGACTGGTAACCAAAACCTT 57.436 42.857 0.00 0.00 37.91 3.50
2096 2779 3.207778 TCGACTGGTAACCAAAACCTTG 58.792 45.455 0.00 0.00 37.91 3.61
2119 2802 2.483876 ACGACCTGAAACATGTCACTG 58.516 47.619 0.00 0.64 30.40 3.66
2124 2807 4.269183 ACCTGAAACATGTCACTGTGAAA 58.731 39.130 12.81 7.74 0.00 2.69
2128 2811 4.024133 TGAAACATGTCACTGTGAAATCCG 60.024 41.667 12.81 4.51 0.00 4.18
2176 2881 2.466870 TTGTACACGCTTGCAAGTTG 57.533 45.000 26.55 23.82 0.00 3.16
2177 2882 0.028770 TGTACACGCTTGCAAGTTGC 59.971 50.000 26.55 21.17 45.29 4.17
2203 2908 6.711277 AGTTCATAGCAAATCAGTACTTGGA 58.289 36.000 0.00 0.00 0.00 3.53
2223 2928 8.592809 ACTTGGAAAATAATGAATAAAGCACCA 58.407 29.630 0.00 0.00 0.00 4.17
2224 2929 8.770438 TTGGAAAATAATGAATAAAGCACCAC 57.230 30.769 0.00 0.00 0.00 4.16
2225 2930 7.327214 TGGAAAATAATGAATAAAGCACCACC 58.673 34.615 0.00 0.00 0.00 4.61
2226 2931 6.475402 GGAAAATAATGAATAAAGCACCACCG 59.525 38.462 0.00 0.00 0.00 4.94
2227 2932 5.514274 AATAATGAATAAAGCACCACCGG 57.486 39.130 0.00 0.00 0.00 5.28
2228 2933 1.762708 ATGAATAAAGCACCACCGGG 58.237 50.000 6.32 0.00 41.29 5.73
2270 2975 8.993121 TGACAAATGATTCAGAAAGTTCTACTC 58.007 33.333 0.00 0.00 35.34 2.59
2277 2982 5.407407 TCAGAAAGTTCTACTCCATGTCC 57.593 43.478 0.00 0.00 35.34 4.02
2361 3075 7.467557 TTTGCTTGAATCACAGTCAATTTTC 57.532 32.000 0.00 0.00 34.59 2.29
2375 3089 5.305128 AGTCAATTTTCCAGCAATTTCCTCA 59.695 36.000 0.00 0.00 0.00 3.86
2417 3131 3.145422 GAGCTAGTGAGAGGCGGCC 62.145 68.421 12.11 12.11 0.00 6.13
2539 3254 9.261180 GGCAATCCTAAATTTTAATAAGAAGGC 57.739 33.333 0.00 0.00 0.00 4.35
2572 3291 2.223782 GCTTCAGCCACATTTGACAACA 60.224 45.455 0.00 0.00 34.31 3.33
2581 3300 4.566360 CCACATTTGACAACAAGAAACACC 59.434 41.667 0.00 0.00 37.32 4.16
2636 3355 6.422776 AGTCGCTATAAGAAAACCACAATG 57.577 37.500 0.00 0.00 0.00 2.82
2649 3368 8.352942 AGAAAACCACAATGAAGAATGTAACTC 58.647 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 3.041940 GTGCCAAGGGACGTCACG 61.042 66.667 18.91 0.00 0.00 4.35
130 131 1.135402 GCTTATTTGTGCCAAGGGACG 60.135 52.381 6.27 0.00 39.39 4.79
155 156 5.061684 GCGCAATACTTCCCAAACAAATAAC 59.938 40.000 0.30 0.00 0.00 1.89
204 205 8.395633 GCACGAAAAAGTACACATAATCCTTAT 58.604 33.333 0.00 0.00 0.00 1.73
254 255 7.171678 AGAGACTTGTACTCTTCAAAATTTCCG 59.828 37.037 0.00 0.00 41.20 4.30
263 264 5.047235 GGGCTTTAGAGACTTGTACTCTTCA 60.047 44.000 0.00 0.00 43.31 3.02
292 293 5.291971 CAACCAAACCAAAGAAAGATGGAG 58.708 41.667 0.00 0.00 39.12 3.86
329 330 6.394345 AAAGAGAACTAGGTCCATTGGATT 57.606 37.500 9.01 3.39 32.73 3.01
363 364 3.833650 TCGGAACATACTGGTGGAGTTAA 59.166 43.478 0.00 0.00 35.96 2.01
365 366 2.253610 TCGGAACATACTGGTGGAGTT 58.746 47.619 0.00 0.00 35.96 3.01
373 374 5.812127 TCAGTTCAATGATCGGAACATACTG 59.188 40.000 20.12 17.07 44.46 2.74
376 377 6.646653 GCTATCAGTTCAATGATCGGAACATA 59.353 38.462 20.12 12.31 44.46 2.29
379 380 4.811024 TGCTATCAGTTCAATGATCGGAAC 59.189 41.667 13.72 13.72 42.82 3.62
420 421 1.690352 GCCATGGCCTGCTTTGATATT 59.310 47.619 27.24 0.00 34.56 1.28
422 423 1.102809 CGCCATGGCCTGCTTTGATA 61.103 55.000 30.79 0.00 37.98 2.15
441 442 2.167075 GCCATCCCTTTATATGCCATGC 59.833 50.000 0.00 0.00 0.00 4.06
472 473 5.588648 TGGAAGAAGGATTAACATAAAGGCG 59.411 40.000 0.00 0.00 0.00 5.52
491 494 6.179040 AGAGATTCTCATCAAAGGTTGGAAG 58.821 40.000 15.83 0.00 32.06 3.46
497 500 7.667575 TTAGCTAGAGATTCTCATCAAAGGT 57.332 36.000 15.83 11.44 32.06 3.50
516 519 6.096282 TCAAAAACTACTGCCAAACTTTAGCT 59.904 34.615 0.00 0.00 0.00 3.32
530 533 5.470437 GCTAGGAGCAAACTCAAAAACTACT 59.530 40.000 0.00 0.00 45.42 2.57
532 535 5.941948 GCTAGGAGCAAACTCAAAAACTA 57.058 39.130 0.00 0.00 45.42 2.24
621 1281 7.176515 TGCTGAAAATTGTGATAGGCTAAAAGA 59.823 33.333 0.00 0.00 0.00 2.52
633 1293 5.353400 TGTTGCAAAATGCTGAAAATTGTGA 59.647 32.000 0.00 0.00 45.31 3.58
659 1319 2.567169 TCTCTTTCAAGGATCTTCGGCA 59.433 45.455 0.00 0.00 0.00 5.69
666 1326 3.369451 GCACGTCTTCTCTTTCAAGGATC 59.631 47.826 0.00 0.00 0.00 3.36
684 1344 0.859232 GGCCTCATATAACACGCACG 59.141 55.000 0.00 0.00 0.00 5.34
746 1406 0.535102 AGAGGTGTCTTTTGGGTGCG 60.535 55.000 0.00 0.00 0.00 5.34
849 1512 5.176406 GGTTTTACTTCGAGCGTTTAGAACT 59.824 40.000 0.00 0.00 0.00 3.01
852 1515 3.670055 CGGTTTTACTTCGAGCGTTTAGA 59.330 43.478 0.00 0.00 0.00 2.10
853 1516 3.670055 TCGGTTTTACTTCGAGCGTTTAG 59.330 43.478 0.00 0.00 35.92 1.85
854 1517 3.637432 TCGGTTTTACTTCGAGCGTTTA 58.363 40.909 0.00 0.00 35.92 2.01
937 1608 1.081892 CACCTCTTGCGATCTGGTTG 58.918 55.000 0.00 0.00 0.00 3.77
1035 1706 1.210967 GAGAGGAGGAAGAGGACGAGA 59.789 57.143 0.00 0.00 0.00 4.04
1184 1867 3.060895 GCTCACAAAGACTATGTACACGC 59.939 47.826 0.00 0.00 0.00 5.34
1305 1988 0.321387 AGATGCTGTGCACTGTGGAG 60.321 55.000 22.70 10.77 43.04 3.86
1324 2007 3.964411 TCGATCACCTAAGAGAAGGACA 58.036 45.455 0.00 0.00 39.15 4.02
1426 2109 2.089980 GCTTGATCACATGTGAGCCTT 58.910 47.619 34.30 18.98 44.69 4.35
1447 2130 1.337260 CGCTCACTTGCTAACTGGTCT 60.337 52.381 0.00 0.00 0.00 3.85
1478 2161 0.179001 AACGGGAGAAACTTGGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
1498 2181 0.028505 CCAGCTTTCGGAATGCATCG 59.971 55.000 24.75 14.92 34.29 3.84
1508 2191 2.192624 CAAAACCAACACCAGCTTTCG 58.807 47.619 0.00 0.00 0.00 3.46
1521 2204 1.153745 GCAACCACACGCAAAACCA 60.154 52.632 0.00 0.00 0.00 3.67
1647 2330 0.097674 CAAAGAATCGAGGCAAGCGG 59.902 55.000 0.00 0.00 0.00 5.52
1673 2356 6.206634 TGGGTAAACATTTGATCTTCAGACAC 59.793 38.462 0.00 0.00 0.00 3.67
1702 2385 1.409427 AGCTTGGGTCGTAGTGATAGC 59.591 52.381 0.00 0.00 0.00 2.97
1705 2388 3.074412 CAAAAGCTTGGGTCGTAGTGAT 58.926 45.455 0.00 0.00 0.00 3.06
1706 2389 2.489971 CAAAAGCTTGGGTCGTAGTGA 58.510 47.619 0.00 0.00 0.00 3.41
1707 2390 2.969443 CAAAAGCTTGGGTCGTAGTG 57.031 50.000 0.00 0.00 0.00 2.74
1717 2400 4.475944 CTCATTCGGTAACCAAAAGCTTG 58.524 43.478 0.00 0.00 0.00 4.01
1718 2401 3.506067 CCTCATTCGGTAACCAAAAGCTT 59.494 43.478 0.00 0.00 0.00 3.74
1719 2402 3.081804 CCTCATTCGGTAACCAAAAGCT 58.918 45.455 0.00 0.00 0.00 3.74
1720 2403 2.415491 GCCTCATTCGGTAACCAAAAGC 60.415 50.000 0.00 0.00 0.00 3.51
1721 2404 2.817258 TGCCTCATTCGGTAACCAAAAG 59.183 45.455 0.00 0.00 0.00 2.27
1722 2405 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
1723 2406 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
1724 2407 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
1725 2408 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
1726 2409 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
1727 2410 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
1728 2411 4.095185 CGGTAAAATTGCCTCATTCGGTAA 59.905 41.667 0.00 0.00 33.14 2.85
1729 2412 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
1730 2413 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
1731 2414 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
1732 2415 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
1733 2416 3.066760 CCCTCGGTAAAATTGCCTCATTC 59.933 47.826 0.00 0.00 0.00 2.67
1734 2417 3.023832 CCCTCGGTAAAATTGCCTCATT 58.976 45.455 0.00 0.00 0.00 2.57
1735 2418 2.025321 ACCCTCGGTAAAATTGCCTCAT 60.025 45.455 0.00 0.00 32.11 2.90
1736 2419 1.353022 ACCCTCGGTAAAATTGCCTCA 59.647 47.619 0.00 0.00 32.11 3.86
1737 2420 1.743394 CACCCTCGGTAAAATTGCCTC 59.257 52.381 0.00 0.00 32.11 4.70
1738 2421 1.353022 TCACCCTCGGTAAAATTGCCT 59.647 47.619 0.00 0.00 32.11 4.75
1739 2422 1.471287 GTCACCCTCGGTAAAATTGCC 59.529 52.381 0.00 0.00 32.11 4.52
1740 2423 2.161609 CAGTCACCCTCGGTAAAATTGC 59.838 50.000 0.00 0.00 32.11 3.56
1741 2424 3.670625 TCAGTCACCCTCGGTAAAATTG 58.329 45.455 0.00 0.00 32.11 2.32
1742 2425 4.569719 ATCAGTCACCCTCGGTAAAATT 57.430 40.909 0.00 0.00 32.11 1.82
1743 2426 5.687166 TTATCAGTCACCCTCGGTAAAAT 57.313 39.130 0.00 0.00 32.11 1.82
1744 2427 5.486735 TTTATCAGTCACCCTCGGTAAAA 57.513 39.130 0.00 0.00 32.11 1.52
1745 2428 5.046159 ACATTTATCAGTCACCCTCGGTAAA 60.046 40.000 0.00 0.00 32.11 2.01
1746 2429 4.468510 ACATTTATCAGTCACCCTCGGTAA 59.531 41.667 0.00 0.00 32.11 2.85
1747 2430 4.028131 ACATTTATCAGTCACCCTCGGTA 58.972 43.478 0.00 0.00 32.11 4.02
1748 2431 2.838202 ACATTTATCAGTCACCCTCGGT 59.162 45.455 0.00 0.00 35.62 4.69
1749 2432 3.198068 CACATTTATCAGTCACCCTCGG 58.802 50.000 0.00 0.00 0.00 4.63
1750 2433 3.198068 CCACATTTATCAGTCACCCTCG 58.802 50.000 0.00 0.00 0.00 4.63
1751 2434 4.222124 ACCACATTTATCAGTCACCCTC 57.778 45.455 0.00 0.00 0.00 4.30
1752 2435 4.657814 AACCACATTTATCAGTCACCCT 57.342 40.909 0.00 0.00 0.00 4.34
1753 2436 4.638865 GGTAACCACATTTATCAGTCACCC 59.361 45.833 0.00 0.00 0.00 4.61
1754 2437 5.250200 TGGTAACCACATTTATCAGTCACC 58.750 41.667 0.00 0.00 0.00 4.02
1769 2452 1.670590 CCGGTAACCGTGGTAACCA 59.329 57.895 0.00 0.00 46.80 3.67
1770 2453 1.079197 CCCGGTAACCGTGGTAACC 60.079 63.158 0.00 0.00 46.80 2.85
1771 2454 0.320050 TTCCCGGTAACCGTGGTAAC 59.680 55.000 0.00 0.00 46.80 2.50
1772 2455 1.051812 TTTCCCGGTAACCGTGGTAA 58.948 50.000 0.00 0.00 46.80 2.85
1773 2456 1.274712 ATTTCCCGGTAACCGTGGTA 58.725 50.000 0.00 0.00 46.80 3.25
1774 2457 1.066215 GTATTTCCCGGTAACCGTGGT 60.066 52.381 0.00 0.00 46.80 4.16
1775 2458 1.655484 GTATTTCCCGGTAACCGTGG 58.345 55.000 0.00 0.00 46.80 4.94
1776 2459 1.655484 GGTATTTCCCGGTAACCGTG 58.345 55.000 0.00 0.00 46.80 4.94
1777 2460 0.175531 CGGTATTTCCCGGTAACCGT 59.824 55.000 17.24 0.00 46.80 4.83
1786 2469 4.038402 TCTCGGTATTTCTCGGTATTTCCC 59.962 45.833 0.00 0.00 0.00 3.97
1787 2470 5.192327 TCTCGGTATTTCTCGGTATTTCC 57.808 43.478 0.00 0.00 0.00 3.13
1788 2471 8.983307 ATATTCTCGGTATTTCTCGGTATTTC 57.017 34.615 0.00 0.00 0.00 2.17
1789 2472 9.774413 AAATATTCTCGGTATTTCTCGGTATTT 57.226 29.630 0.00 0.00 28.29 1.40
1790 2473 9.420551 GAAATATTCTCGGTATTTCTCGGTATT 57.579 33.333 9.99 0.00 41.76 1.89
1791 2474 7.754027 CGAAATATTCTCGGTATTTCTCGGTAT 59.246 37.037 13.53 0.00 42.35 2.73
1792 2475 7.041167 TCGAAATATTCTCGGTATTTCTCGGTA 60.041 37.037 15.30 0.00 42.35 4.02
1793 2476 5.919141 CGAAATATTCTCGGTATTTCTCGGT 59.081 40.000 13.53 0.00 42.35 4.69
1794 2477 6.147581 TCGAAATATTCTCGGTATTTCTCGG 58.852 40.000 15.30 3.07 42.35 4.63
1795 2478 7.491683 GTTCGAAATATTCTCGGTATTTCTCG 58.508 38.462 0.00 6.03 42.35 4.04
1796 2479 7.377928 TCGTTCGAAATATTCTCGGTATTTCTC 59.622 37.037 0.00 6.33 42.35 2.87
1797 2480 7.198390 TCGTTCGAAATATTCTCGGTATTTCT 58.802 34.615 0.00 0.00 42.35 2.52
1798 2481 7.385668 TCGTTCGAAATATTCTCGGTATTTC 57.614 36.000 0.00 8.01 41.66 2.17
1799 2482 7.760131 TTCGTTCGAAATATTCTCGGTATTT 57.240 32.000 0.00 0.00 36.93 1.40
1800 2483 7.941795 ATTCGTTCGAAATATTCTCGGTATT 57.058 32.000 11.50 0.00 36.93 1.89
1801 2484 7.941795 AATTCGTTCGAAATATTCTCGGTAT 57.058 32.000 11.50 0.00 36.93 2.73
1802 2485 7.760131 AAATTCGTTCGAAATATTCTCGGTA 57.240 32.000 11.50 6.19 36.93 4.02
1803 2486 6.657836 AAATTCGTTCGAAATATTCTCGGT 57.342 33.333 11.50 0.00 36.93 4.69
1856 2539 6.475402 GTCTTTGGTTTGAATGTTCGTTCATT 59.525 34.615 8.05 7.33 37.88 2.57
1857 2540 5.977129 GTCTTTGGTTTGAATGTTCGTTCAT 59.023 36.000 8.05 0.00 37.88 2.57
1858 2541 5.336744 GTCTTTGGTTTGAATGTTCGTTCA 58.663 37.500 3.68 3.68 36.38 3.18
1859 2542 4.738252 GGTCTTTGGTTTGAATGTTCGTTC 59.262 41.667 0.00 0.00 0.00 3.95
1860 2543 4.401202 AGGTCTTTGGTTTGAATGTTCGTT 59.599 37.500 0.00 0.00 0.00 3.85
1861 2544 3.951680 AGGTCTTTGGTTTGAATGTTCGT 59.048 39.130 0.00 0.00 0.00 3.85
1862 2545 4.202010 ACAGGTCTTTGGTTTGAATGTTCG 60.202 41.667 0.00 0.00 0.00 3.95
1863 2546 5.163561 TGACAGGTCTTTGGTTTGAATGTTC 60.164 40.000 0.65 0.00 0.00 3.18
1864 2547 4.709397 TGACAGGTCTTTGGTTTGAATGTT 59.291 37.500 0.65 0.00 0.00 2.71
1865 2548 4.277476 TGACAGGTCTTTGGTTTGAATGT 58.723 39.130 0.65 0.00 0.00 2.71
1866 2549 4.916983 TGACAGGTCTTTGGTTTGAATG 57.083 40.909 0.65 0.00 0.00 2.67
1867 2550 5.930837 TTTGACAGGTCTTTGGTTTGAAT 57.069 34.783 0.65 0.00 0.00 2.57
1868 2551 5.011125 TGTTTTGACAGGTCTTTGGTTTGAA 59.989 36.000 0.65 0.00 0.00 2.69
1869 2552 4.524714 TGTTTTGACAGGTCTTTGGTTTGA 59.475 37.500 0.65 0.00 0.00 2.69
1870 2553 4.815269 TGTTTTGACAGGTCTTTGGTTTG 58.185 39.130 0.65 0.00 0.00 2.93
1871 2554 5.072040 CTGTTTTGACAGGTCTTTGGTTT 57.928 39.130 0.65 0.00 34.28 3.27
1872 2555 4.718940 CTGTTTTGACAGGTCTTTGGTT 57.281 40.909 0.65 0.00 34.28 3.67
1882 2565 4.261197 GCAACCTAGTTCCTGTTTTGACAG 60.261 45.833 0.00 0.00 37.48 3.51
1883 2566 3.630312 GCAACCTAGTTCCTGTTTTGACA 59.370 43.478 0.00 0.00 0.00 3.58
1884 2567 3.883489 AGCAACCTAGTTCCTGTTTTGAC 59.117 43.478 0.00 0.00 0.00 3.18
1885 2568 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
1886 2569 5.705441 TCATAGCAACCTAGTTCCTGTTTTG 59.295 40.000 0.00 0.00 0.00 2.44
1887 2570 5.876357 TCATAGCAACCTAGTTCCTGTTTT 58.124 37.500 0.00 0.00 0.00 2.43
1888 2571 5.499004 TCATAGCAACCTAGTTCCTGTTT 57.501 39.130 0.00 0.00 0.00 2.83
1889 2572 5.221843 TGTTCATAGCAACCTAGTTCCTGTT 60.222 40.000 0.00 0.00 0.00 3.16
1890 2573 4.286032 TGTTCATAGCAACCTAGTTCCTGT 59.714 41.667 0.00 0.00 0.00 4.00
1891 2574 4.631813 GTGTTCATAGCAACCTAGTTCCTG 59.368 45.833 0.00 0.00 0.00 3.86
1892 2575 4.620803 CGTGTTCATAGCAACCTAGTTCCT 60.621 45.833 0.00 0.00 0.00 3.36
1893 2576 3.617263 CGTGTTCATAGCAACCTAGTTCC 59.383 47.826 0.00 0.00 0.00 3.62
1894 2577 4.243270 ACGTGTTCATAGCAACCTAGTTC 58.757 43.478 0.00 0.00 0.00 3.01
1895 2578 4.243270 GACGTGTTCATAGCAACCTAGTT 58.757 43.478 0.00 0.00 0.00 2.24
1896 2579 3.257375 TGACGTGTTCATAGCAACCTAGT 59.743 43.478 0.00 0.00 0.00 2.57
1897 2580 3.845178 TGACGTGTTCATAGCAACCTAG 58.155 45.455 0.00 0.00 0.00 3.02
1898 2581 3.508402 TCTGACGTGTTCATAGCAACCTA 59.492 43.478 0.00 0.00 32.17 3.08
1899 2582 2.299013 TCTGACGTGTTCATAGCAACCT 59.701 45.455 0.00 0.00 32.17 3.50
1900 2583 2.683968 TCTGACGTGTTCATAGCAACC 58.316 47.619 0.00 0.00 32.17 3.77
1901 2584 4.388773 TGATTCTGACGTGTTCATAGCAAC 59.611 41.667 0.00 0.00 32.17 4.17
1902 2585 4.565022 TGATTCTGACGTGTTCATAGCAA 58.435 39.130 0.00 0.00 32.17 3.91
1903 2586 4.186856 TGATTCTGACGTGTTCATAGCA 57.813 40.909 0.00 0.00 32.17 3.49
1904 2587 4.627467 AGTTGATTCTGACGTGTTCATAGC 59.373 41.667 0.00 0.00 32.17 2.97
1905 2588 6.096036 AGAGTTGATTCTGACGTGTTCATAG 58.904 40.000 0.00 0.00 32.17 2.23
1906 2589 6.025749 AGAGTTGATTCTGACGTGTTCATA 57.974 37.500 0.00 0.00 32.17 2.15
1907 2590 4.887748 AGAGTTGATTCTGACGTGTTCAT 58.112 39.130 0.00 0.00 32.17 2.57
1908 2591 4.299155 GAGAGTTGATTCTGACGTGTTCA 58.701 43.478 0.00 0.00 0.00 3.18
1909 2592 3.675698 GGAGAGTTGATTCTGACGTGTTC 59.324 47.826 0.00 0.00 0.00 3.18
1910 2593 3.322254 AGGAGAGTTGATTCTGACGTGTT 59.678 43.478 0.00 0.00 0.00 3.32
1911 2594 2.894126 AGGAGAGTTGATTCTGACGTGT 59.106 45.455 0.00 0.00 0.00 4.49
1912 2595 3.584406 AGGAGAGTTGATTCTGACGTG 57.416 47.619 0.00 0.00 0.00 4.49
1913 2596 3.862642 GCAAGGAGAGTTGATTCTGACGT 60.863 47.826 0.00 0.00 0.00 4.34
1914 2597 2.670414 GCAAGGAGAGTTGATTCTGACG 59.330 50.000 0.00 0.00 0.00 4.35
1915 2598 3.668447 TGCAAGGAGAGTTGATTCTGAC 58.332 45.455 0.00 0.00 0.00 3.51
1916 2599 4.564782 ATGCAAGGAGAGTTGATTCTGA 57.435 40.909 0.00 0.00 0.00 3.27
1917 2600 6.748333 TTAATGCAAGGAGAGTTGATTCTG 57.252 37.500 0.00 0.00 0.00 3.02
1918 2601 7.951347 AATTAATGCAAGGAGAGTTGATTCT 57.049 32.000 0.00 0.00 0.00 2.40
1919 2602 9.113838 TCTAATTAATGCAAGGAGAGTTGATTC 57.886 33.333 0.00 0.00 0.00 2.52
1920 2603 9.638176 ATCTAATTAATGCAAGGAGAGTTGATT 57.362 29.630 0.00 0.00 0.00 2.57
1921 2604 9.282569 GATCTAATTAATGCAAGGAGAGTTGAT 57.717 33.333 0.00 0.00 0.00 2.57
1922 2605 7.716998 GGATCTAATTAATGCAAGGAGAGTTGA 59.283 37.037 0.00 0.00 0.00 3.18
1923 2606 7.718753 AGGATCTAATTAATGCAAGGAGAGTTG 59.281 37.037 0.00 0.00 0.00 3.16
1924 2607 7.810260 AGGATCTAATTAATGCAAGGAGAGTT 58.190 34.615 0.00 0.00 0.00 3.01
1925 2608 7.385894 AGGATCTAATTAATGCAAGGAGAGT 57.614 36.000 0.00 0.00 0.00 3.24
1926 2609 8.040132 CCTAGGATCTAATTAATGCAAGGAGAG 58.960 40.741 1.05 0.00 0.00 3.20
1927 2610 7.527868 GCCTAGGATCTAATTAATGCAAGGAGA 60.528 40.741 14.75 0.00 0.00 3.71
1928 2611 6.597280 GCCTAGGATCTAATTAATGCAAGGAG 59.403 42.308 14.75 0.00 0.00 3.69
1929 2612 6.044287 TGCCTAGGATCTAATTAATGCAAGGA 59.956 38.462 14.75 0.00 0.00 3.36
1930 2613 6.150140 GTGCCTAGGATCTAATTAATGCAAGG 59.850 42.308 14.75 0.00 0.00 3.61
1931 2614 6.939163 AGTGCCTAGGATCTAATTAATGCAAG 59.061 38.462 14.75 0.00 0.00 4.01
1932 2615 6.841601 AGTGCCTAGGATCTAATTAATGCAA 58.158 36.000 14.75 0.00 0.00 4.08
1933 2616 6.439636 AGTGCCTAGGATCTAATTAATGCA 57.560 37.500 14.75 0.00 0.00 3.96
1934 2617 7.751768 AAAGTGCCTAGGATCTAATTAATGC 57.248 36.000 14.75 0.00 0.00 3.56
1938 2621 9.650714 TGTAGTAAAGTGCCTAGGATCTAATTA 57.349 33.333 14.75 3.70 0.00 1.40
1939 2622 8.548880 TGTAGTAAAGTGCCTAGGATCTAATT 57.451 34.615 14.75 4.62 0.00 1.40
1940 2623 8.548880 TTGTAGTAAAGTGCCTAGGATCTAAT 57.451 34.615 14.75 5.24 0.00 1.73
1941 2624 7.966339 TTGTAGTAAAGTGCCTAGGATCTAA 57.034 36.000 14.75 0.00 0.00 2.10
1942 2625 7.966339 TTTGTAGTAAAGTGCCTAGGATCTA 57.034 36.000 14.75 0.91 0.00 1.98
1943 2626 6.869206 TTTGTAGTAAAGTGCCTAGGATCT 57.131 37.500 14.75 6.65 0.00 2.75
1944 2627 6.421202 CGATTTGTAGTAAAGTGCCTAGGATC 59.579 42.308 14.75 4.08 0.00 3.36
1945 2628 6.097839 TCGATTTGTAGTAAAGTGCCTAGGAT 59.902 38.462 14.75 0.00 0.00 3.24
1946 2629 5.419788 TCGATTTGTAGTAAAGTGCCTAGGA 59.580 40.000 14.75 0.00 0.00 2.94
1947 2630 5.657474 TCGATTTGTAGTAAAGTGCCTAGG 58.343 41.667 3.67 3.67 0.00 3.02
1948 2631 5.232414 GCTCGATTTGTAGTAAAGTGCCTAG 59.768 44.000 0.00 0.00 0.00 3.02
1949 2632 5.107133 GCTCGATTTGTAGTAAAGTGCCTA 58.893 41.667 0.00 0.00 0.00 3.93
1950 2633 3.933332 GCTCGATTTGTAGTAAAGTGCCT 59.067 43.478 0.00 0.00 0.00 4.75
1951 2634 3.241995 CGCTCGATTTGTAGTAAAGTGCC 60.242 47.826 0.00 0.00 0.00 5.01
1952 2635 3.367025 ACGCTCGATTTGTAGTAAAGTGC 59.633 43.478 0.00 0.00 0.00 4.40
1953 2636 5.511088 AACGCTCGATTTGTAGTAAAGTG 57.489 39.130 0.00 0.00 0.00 3.16
1954 2637 7.642071 TTTAACGCTCGATTTGTAGTAAAGT 57.358 32.000 0.00 0.00 0.00 2.66
1955 2638 9.537848 AATTTTAACGCTCGATTTGTAGTAAAG 57.462 29.630 0.00 0.00 0.00 1.85
1956 2639 9.532697 GAATTTTAACGCTCGATTTGTAGTAAA 57.467 29.630 0.00 0.00 0.00 2.01
1957 2640 8.710551 TGAATTTTAACGCTCGATTTGTAGTAA 58.289 29.630 0.00 0.00 0.00 2.24
1958 2641 8.242085 TGAATTTTAACGCTCGATTTGTAGTA 57.758 30.769 0.00 0.00 0.00 1.82
1959 2642 7.124347 TGAATTTTAACGCTCGATTTGTAGT 57.876 32.000 0.00 0.00 0.00 2.73
1960 2643 8.429739 TTTGAATTTTAACGCTCGATTTGTAG 57.570 30.769 0.00 0.00 0.00 2.74
1961 2644 8.783999 TTTTGAATTTTAACGCTCGATTTGTA 57.216 26.923 0.00 0.00 0.00 2.41
1962 2645 7.687005 TTTTGAATTTTAACGCTCGATTTGT 57.313 28.000 0.00 0.00 0.00 2.83
1963 2646 9.579610 AAATTTTGAATTTTAACGCTCGATTTG 57.420 25.926 0.00 0.00 0.00 2.32
1965 2648 9.791838 GAAAATTTTGAATTTTAACGCTCGATT 57.208 25.926 8.47 0.00 32.03 3.34
1966 2649 8.973378 TGAAAATTTTGAATTTTAACGCTCGAT 58.027 25.926 8.47 0.00 32.03 3.59
1967 2650 8.341477 TGAAAATTTTGAATTTTAACGCTCGA 57.659 26.923 8.47 0.00 32.03 4.04
1968 2651 8.964367 TTGAAAATTTTGAATTTTAACGCTCG 57.036 26.923 8.47 0.00 32.03 5.03
2006 2689 5.106078 GGTAAATCCACATACCGAGCAAAAA 60.106 40.000 0.00 0.00 32.84 1.94
2007 2690 4.396790 GGTAAATCCACATACCGAGCAAAA 59.603 41.667 0.00 0.00 32.84 2.44
2008 2691 3.942748 GGTAAATCCACATACCGAGCAAA 59.057 43.478 0.00 0.00 32.84 3.68
2009 2692 3.537580 GGTAAATCCACATACCGAGCAA 58.462 45.455 0.00 0.00 32.84 3.91
2010 2693 3.188159 GGTAAATCCACATACCGAGCA 57.812 47.619 0.00 0.00 32.84 4.26
2015 2698 2.224450 CCCCTCGGTAAATCCACATACC 60.224 54.545 0.00 0.00 38.55 2.73
2016 2699 2.809299 GCCCCTCGGTAAATCCACATAC 60.809 54.545 0.00 0.00 35.57 2.39
2017 2700 1.418637 GCCCCTCGGTAAATCCACATA 59.581 52.381 0.00 0.00 35.57 2.29
2018 2701 0.182775 GCCCCTCGGTAAATCCACAT 59.817 55.000 0.00 0.00 35.57 3.21
2019 2702 1.202099 TGCCCCTCGGTAAATCCACA 61.202 55.000 0.00 0.00 35.57 4.17
2020 2703 0.746923 GTGCCCCTCGGTAAATCCAC 60.747 60.000 0.00 0.00 35.57 4.02
2021 2704 1.605453 GTGCCCCTCGGTAAATCCA 59.395 57.895 0.00 0.00 35.57 3.41
2022 2705 1.523032 CGTGCCCCTCGGTAAATCC 60.523 63.158 0.00 0.00 0.00 3.01
2023 2706 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
2024 2707 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
2025 2708 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
2026 2709 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
2027 2710 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
2028 2711 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
2030 2713 1.087771 GTGTATTTCCGTGCCCCTCG 61.088 60.000 0.00 0.00 0.00 4.63
2031 2714 1.087771 CGTGTATTTCCGTGCCCCTC 61.088 60.000 0.00 0.00 0.00 4.30
2032 2715 1.078708 CGTGTATTTCCGTGCCCCT 60.079 57.895 0.00 0.00 0.00 4.79
2033 2716 2.110352 CCGTGTATTTCCGTGCCCC 61.110 63.158 0.00 0.00 0.00 5.80
2034 2717 0.108233 TACCGTGTATTTCCGTGCCC 60.108 55.000 0.00 0.00 0.00 5.36
2035 2718 1.394572 GTTACCGTGTATTTCCGTGCC 59.605 52.381 0.00 0.00 0.00 5.01
2036 2719 1.394572 GGTTACCGTGTATTTCCGTGC 59.605 52.381 0.00 0.00 0.00 5.34
2037 2720 2.686235 TGGTTACCGTGTATTTCCGTG 58.314 47.619 0.00 0.00 0.00 4.94
2038 2721 3.264104 CATGGTTACCGTGTATTTCCGT 58.736 45.455 15.05 0.00 35.92 4.69
2039 2722 2.610374 CCATGGTTACCGTGTATTTCCG 59.390 50.000 20.69 1.61 38.76 4.30
2040 2723 2.946990 CCCATGGTTACCGTGTATTTCC 59.053 50.000 20.69 0.00 38.76 3.13
2041 2724 3.876341 TCCCATGGTTACCGTGTATTTC 58.124 45.455 20.69 0.00 38.76 2.17
2042 2725 4.304048 TTCCCATGGTTACCGTGTATTT 57.696 40.909 20.69 0.00 38.76 1.40
2043 2726 4.304048 TTTCCCATGGTTACCGTGTATT 57.696 40.909 20.69 0.00 38.76 1.89
2044 2727 4.165372 AGATTTCCCATGGTTACCGTGTAT 59.835 41.667 20.69 9.44 38.76 2.29
2045 2728 3.520317 AGATTTCCCATGGTTACCGTGTA 59.480 43.478 20.69 7.25 38.76 2.90
2046 2729 2.307686 AGATTTCCCATGGTTACCGTGT 59.692 45.455 20.69 3.25 38.76 4.49
2047 2730 2.999331 AGATTTCCCATGGTTACCGTG 58.001 47.619 16.22 16.22 40.02 4.94
2048 2731 3.009695 TCAAGATTTCCCATGGTTACCGT 59.990 43.478 11.73 0.00 0.00 4.83
2049 2732 3.616219 TCAAGATTTCCCATGGTTACCG 58.384 45.455 11.73 0.00 0.00 4.02
2050 2733 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
2051 2734 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
2052 2735 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
2053 2736 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
2054 2737 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
2055 2738 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
2056 2739 6.529125 CAGTCGAAATTTCAAGATTTCCCATG 59.471 38.462 17.99 0.00 41.02 3.66
2057 2740 6.350445 CCAGTCGAAATTTCAAGATTTCCCAT 60.350 38.462 17.99 0.00 41.02 4.00
2058 2741 5.048083 CCAGTCGAAATTTCAAGATTTCCCA 60.048 40.000 17.99 0.00 41.02 4.37
2059 2742 5.048013 ACCAGTCGAAATTTCAAGATTTCCC 60.048 40.000 17.99 0.00 41.02 3.97
2060 2743 6.013842 ACCAGTCGAAATTTCAAGATTTCC 57.986 37.500 17.99 0.00 41.02 3.13
2061 2744 7.537649 GGTTACCAGTCGAAATTTCAAGATTTC 59.462 37.037 17.99 0.00 40.80 2.17
2062 2745 7.013846 TGGTTACCAGTCGAAATTTCAAGATTT 59.986 33.333 17.99 0.99 32.16 2.17
2063 2746 6.488683 TGGTTACCAGTCGAAATTTCAAGATT 59.511 34.615 17.99 2.59 0.00 2.40
2064 2747 6.001460 TGGTTACCAGTCGAAATTTCAAGAT 58.999 36.000 17.99 1.22 0.00 2.40
2065 2748 5.369833 TGGTTACCAGTCGAAATTTCAAGA 58.630 37.500 17.99 5.43 0.00 3.02
2066 2749 5.682943 TGGTTACCAGTCGAAATTTCAAG 57.317 39.130 17.99 3.07 0.00 3.02
2067 2750 6.452494 TTTGGTTACCAGTCGAAATTTCAA 57.548 33.333 17.99 0.00 33.81 2.69
2068 2751 6.267070 GTTTTGGTTACCAGTCGAAATTTCA 58.733 36.000 17.99 2.95 33.81 2.69
2069 2752 5.688621 GGTTTTGGTTACCAGTCGAAATTTC 59.311 40.000 3.65 8.20 33.81 2.17
2070 2753 5.361571 AGGTTTTGGTTACCAGTCGAAATTT 59.638 36.000 3.65 0.00 38.16 1.82
2071 2754 4.891168 AGGTTTTGGTTACCAGTCGAAATT 59.109 37.500 3.65 0.00 38.16 1.82
2072 2755 4.466827 AGGTTTTGGTTACCAGTCGAAAT 58.533 39.130 3.65 0.00 38.16 2.17
2073 2756 3.888583 AGGTTTTGGTTACCAGTCGAAA 58.111 40.909 3.65 0.00 38.16 3.46
2074 2757 3.564053 AGGTTTTGGTTACCAGTCGAA 57.436 42.857 3.65 0.00 38.16 3.71
2075 2758 3.207778 CAAGGTTTTGGTTACCAGTCGA 58.792 45.455 3.65 0.00 38.16 4.20
2076 2759 2.287368 GCAAGGTTTTGGTTACCAGTCG 60.287 50.000 3.65 0.00 38.16 4.18
2077 2760 2.956333 AGCAAGGTTTTGGTTACCAGTC 59.044 45.455 3.65 0.00 42.03 3.51
2078 2761 3.026707 AGCAAGGTTTTGGTTACCAGT 57.973 42.857 3.65 0.00 42.03 4.00
2079 2762 3.058501 CGTAGCAAGGTTTTGGTTACCAG 60.059 47.826 3.65 0.00 42.03 4.00
2080 2763 2.879646 CGTAGCAAGGTTTTGGTTACCA 59.120 45.455 0.00 0.00 42.03 3.25
2081 2764 3.058708 GTCGTAGCAAGGTTTTGGTTACC 60.059 47.826 0.00 0.00 42.03 2.85
2082 2765 3.058708 GGTCGTAGCAAGGTTTTGGTTAC 60.059 47.826 0.00 0.00 42.03 2.50
2083 2766 3.140623 GGTCGTAGCAAGGTTTTGGTTA 58.859 45.455 0.00 0.00 42.03 2.85
2084 2767 1.951602 GGTCGTAGCAAGGTTTTGGTT 59.048 47.619 0.00 0.00 42.03 3.67
2085 2768 1.142262 AGGTCGTAGCAAGGTTTTGGT 59.858 47.619 0.00 0.00 46.13 3.67
2086 2769 1.535462 CAGGTCGTAGCAAGGTTTTGG 59.465 52.381 0.00 0.00 34.79 3.28
2087 2770 2.489971 TCAGGTCGTAGCAAGGTTTTG 58.510 47.619 0.00 0.00 37.36 2.44
2088 2771 2.922740 TCAGGTCGTAGCAAGGTTTT 57.077 45.000 0.00 0.00 0.00 2.43
2089 2772 2.876550 GTTTCAGGTCGTAGCAAGGTTT 59.123 45.455 0.00 0.00 0.00 3.27
2090 2773 2.158871 TGTTTCAGGTCGTAGCAAGGTT 60.159 45.455 0.00 0.00 0.00 3.50
2091 2774 1.414919 TGTTTCAGGTCGTAGCAAGGT 59.585 47.619 0.00 0.00 0.00 3.50
2092 2775 2.163818 TGTTTCAGGTCGTAGCAAGG 57.836 50.000 0.00 0.00 0.00 3.61
2093 2776 3.067106 ACATGTTTCAGGTCGTAGCAAG 58.933 45.455 0.00 0.00 0.00 4.01
2094 2777 3.064207 GACATGTTTCAGGTCGTAGCAA 58.936 45.455 0.00 0.00 35.55 3.91
2095 2778 2.036604 TGACATGTTTCAGGTCGTAGCA 59.963 45.455 0.00 0.00 46.33 3.49
2096 2779 2.412089 GTGACATGTTTCAGGTCGTAGC 59.588 50.000 0.00 0.00 46.33 3.58
2119 2802 0.100503 CAAATCGCCCCGGATTTCAC 59.899 55.000 0.73 0.00 42.99 3.18
2124 2807 2.414785 GCAACAAATCGCCCCGGAT 61.415 57.895 0.73 0.00 0.00 4.18
2128 2811 2.093537 TTGGTGCAACAAATCGCCCC 62.094 55.000 16.46 0.00 39.98 5.80
2176 2881 6.428385 AGTACTGATTTGCTATGAACTTGC 57.572 37.500 0.00 0.00 0.00 4.01
2177 2882 7.119699 TCCAAGTACTGATTTGCTATGAACTTG 59.880 37.037 0.00 0.00 40.42 3.16
2178 2883 7.168219 TCCAAGTACTGATTTGCTATGAACTT 58.832 34.615 0.00 0.00 0.00 2.66
2179 2884 6.711277 TCCAAGTACTGATTTGCTATGAACT 58.289 36.000 0.00 0.00 0.00 3.01
2180 2885 6.985188 TCCAAGTACTGATTTGCTATGAAC 57.015 37.500 0.00 0.00 0.00 3.18
2181 2886 7.994425 TTTCCAAGTACTGATTTGCTATGAA 57.006 32.000 0.00 0.00 0.00 2.57
2182 2887 7.994425 TTTTCCAAGTACTGATTTGCTATGA 57.006 32.000 0.00 0.00 0.00 2.15
2203 2908 6.337356 CCGGTGGTGCTTTATTCATTATTTT 58.663 36.000 0.00 0.00 0.00 1.82
2228 2933 0.379316 GTCACACCCGGTTGTCAAAC 59.621 55.000 0.00 0.00 35.40 2.93
2229 2934 0.035343 TGTCACACCCGGTTGTCAAA 60.035 50.000 0.00 0.00 0.00 2.69
2230 2935 0.035343 TTGTCACACCCGGTTGTCAA 60.035 50.000 0.00 1.44 0.00 3.18
2231 2936 0.035343 TTTGTCACACCCGGTTGTCA 60.035 50.000 0.00 0.00 0.00 3.58
2232 2937 1.001815 CATTTGTCACACCCGGTTGTC 60.002 52.381 0.00 0.00 0.00 3.18
2233 2938 1.028905 CATTTGTCACACCCGGTTGT 58.971 50.000 0.00 0.00 0.00 3.32
2234 2939 1.313772 TCATTTGTCACACCCGGTTG 58.686 50.000 0.00 0.00 0.00 3.77
2235 2940 2.286365 ATCATTTGTCACACCCGGTT 57.714 45.000 0.00 0.00 0.00 4.44
2270 2975 4.695928 CAGATATCATCAGCTTGGACATGG 59.304 45.833 5.32 0.00 0.00 3.66
2277 2982 3.336468 GCCCTCAGATATCATCAGCTTG 58.664 50.000 5.32 0.00 0.00 4.01
2341 3055 5.632347 GCTGGAAAATTGACTGTGATTCAAG 59.368 40.000 0.00 0.00 36.44 3.02
2361 3075 4.994907 TGAATCATGAGGAAATTGCTGG 57.005 40.909 0.09 0.00 0.00 4.85
2417 3131 2.705934 ATAGCTCCGCGTCTGCCATG 62.706 60.000 4.92 0.00 38.08 3.66
2531 3246 2.172717 GCATAGGGAGTTGGCCTTCTTA 59.827 50.000 3.32 0.00 0.00 2.10
2532 3247 1.064389 GCATAGGGAGTTGGCCTTCTT 60.064 52.381 3.32 0.00 0.00 2.52
2533 3248 0.548510 GCATAGGGAGTTGGCCTTCT 59.451 55.000 3.32 1.42 0.00 2.85
2534 3249 0.548510 AGCATAGGGAGTTGGCCTTC 59.451 55.000 3.32 0.00 0.00 3.46
2535 3250 1.002857 AAGCATAGGGAGTTGGCCTT 58.997 50.000 3.32 0.00 0.00 4.35
2537 3252 0.255890 TGAAGCATAGGGAGTTGGCC 59.744 55.000 0.00 0.00 0.00 5.36
2538 3253 1.673168 CTGAAGCATAGGGAGTTGGC 58.327 55.000 0.00 0.00 0.00 4.52
2539 3254 1.673168 GCTGAAGCATAGGGAGTTGG 58.327 55.000 0.00 0.00 41.59 3.77
2572 3291 7.162082 AGAATTCAAGATAGACGGTGTTTCTT 58.838 34.615 8.44 5.39 0.00 2.52
2581 3300 9.483062 GTGAAAATTGAGAATTCAAGATAGACG 57.517 33.333 8.44 0.00 45.89 4.18
2636 3355 4.515191 TGGCACACTTGAGTTACATTCTTC 59.485 41.667 0.00 0.00 0.00 2.87
2649 3368 2.153645 TGCATAGAGTTGGCACACTTG 58.846 47.619 0.00 0.00 39.29 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.