Multiple sequence alignment - TraesCS3D01G281500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G281500 chr3D 100.000 2954 0 0 1 2954 389264600 389267553 0.000000e+00 5456.0
1 TraesCS3D01G281500 chr3D 96.154 546 21 0 1 546 612597820 612598365 0.000000e+00 893.0
2 TraesCS3D01G281500 chr3D 95.164 517 25 0 1 517 570045764 570045248 0.000000e+00 817.0
3 TraesCS3D01G281500 chr3D 86.722 482 47 9 2484 2951 598713736 598713258 1.210000e-143 520.0
4 TraesCS3D01G281500 chr3D 86.765 476 47 6 2489 2951 13206755 13206283 1.570000e-142 516.0
5 TraesCS3D01G281500 chr3B 92.254 2001 80 27 550 2482 506984237 506986230 0.000000e+00 2767.0
6 TraesCS3D01G281500 chr3A 91.681 1731 77 33 802 2488 510188089 510189796 0.000000e+00 2337.0
7 TraesCS3D01G281500 chr3A 93.796 548 32 1 1 546 106514887 106515434 0.000000e+00 822.0
8 TraesCS3D01G281500 chr3A 85.037 401 42 6 2489 2874 451201803 451202200 2.760000e-105 392.0
9 TraesCS3D01G281500 chr4B 95.971 546 22 0 1 546 431252679 431253224 0.000000e+00 887.0
10 TraesCS3D01G281500 chr4A 94.698 547 25 2 1 546 634448994 634449537 0.000000e+00 846.0
11 TraesCS3D01G281500 chr4A 93.784 547 33 1 1 546 634416727 634417273 0.000000e+00 821.0
12 TraesCS3D01G281500 chr4A 94.118 340 20 0 2615 2954 75916828 75917167 4.360000e-143 518.0
13 TraesCS3D01G281500 chr4A 96.117 103 4 0 2493 2595 75916674 75916776 5.060000e-38 169.0
14 TraesCS3D01G281500 chr5D 95.164 517 25 0 1 517 386211892 386212408 0.000000e+00 817.0
15 TraesCS3D01G281500 chr2D 94.961 516 26 0 1 516 647737150 647737665 0.000000e+00 809.0
16 TraesCS3D01G281500 chr2D 83.262 466 62 7 2487 2940 542111388 542111849 5.890000e-112 414.0
17 TraesCS3D01G281500 chr2B 93.407 546 35 1 1 546 36866632 36867176 0.000000e+00 808.0
18 TraesCS3D01G281500 chr6A 91.441 479 26 6 2488 2954 538550543 538550068 0.000000e+00 643.0
19 TraesCS3D01G281500 chr6A 86.164 477 51 8 2488 2951 180392784 180392310 4.400000e-138 501.0
20 TraesCS3D01G281500 chr6A 86.547 446 46 3 2520 2951 570489834 570489389 2.060000e-131 479.0
21 TraesCS3D01G281500 chr5A 87.421 477 44 7 2490 2951 30003415 30002940 4.330000e-148 534.0
22 TraesCS3D01G281500 chr6D 87.212 477 47 7 2488 2951 86739277 86738802 5.610000e-147 531.0
23 TraesCS3D01G281500 chr1A 84.906 477 58 10 2488 2951 361360838 361360363 1.240000e-128 470.0
24 TraesCS3D01G281500 chr1A 83.871 186 16 5 2488 2659 524607203 524607018 6.550000e-37 165.0
25 TraesCS3D01G281500 chr1A 73.702 289 63 8 1457 1735 583604877 583605162 1.870000e-17 100.0
26 TraesCS3D01G281500 chr5B 84.937 478 54 6 2489 2951 530038749 530038275 4.460000e-128 468.0
27 TraesCS3D01G281500 chr1B 84.375 480 56 11 2488 2953 539874704 539875178 1.250000e-123 453.0
28 TraesCS3D01G281500 chr1B 75.972 283 61 7 1457 1735 676746682 676746961 3.970000e-29 139.0
29 TraesCS3D01G281500 chr7A 82.337 368 39 15 2489 2837 544208540 544208180 2.230000e-76 296.0
30 TraesCS3D01G281500 chr1D 74.740 289 60 9 1457 1735 486014611 486014896 1.860000e-22 117.0
31 TraesCS3D01G281500 chr1D 83.000 100 13 3 2489 2588 455800042 455800137 1.460000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G281500 chr3D 389264600 389267553 2953 False 5456 5456 100.000 1 2954 1 chr3D.!!$F1 2953
1 TraesCS3D01G281500 chr3D 612597820 612598365 545 False 893 893 96.154 1 546 1 chr3D.!!$F2 545
2 TraesCS3D01G281500 chr3D 570045248 570045764 516 True 817 817 95.164 1 517 1 chr3D.!!$R2 516
3 TraesCS3D01G281500 chr3B 506984237 506986230 1993 False 2767 2767 92.254 550 2482 1 chr3B.!!$F1 1932
4 TraesCS3D01G281500 chr3A 510188089 510189796 1707 False 2337 2337 91.681 802 2488 1 chr3A.!!$F3 1686
5 TraesCS3D01G281500 chr3A 106514887 106515434 547 False 822 822 93.796 1 546 1 chr3A.!!$F1 545
6 TraesCS3D01G281500 chr4B 431252679 431253224 545 False 887 887 95.971 1 546 1 chr4B.!!$F1 545
7 TraesCS3D01G281500 chr4A 634448994 634449537 543 False 846 846 94.698 1 546 1 chr4A.!!$F2 545
8 TraesCS3D01G281500 chr4A 634416727 634417273 546 False 821 821 93.784 1 546 1 chr4A.!!$F1 545
9 TraesCS3D01G281500 chr5D 386211892 386212408 516 False 817 817 95.164 1 517 1 chr5D.!!$F1 516
10 TraesCS3D01G281500 chr2D 647737150 647737665 515 False 809 809 94.961 1 516 1 chr2D.!!$F2 515
11 TraesCS3D01G281500 chr2B 36866632 36867176 544 False 808 808 93.407 1 546 1 chr2B.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 552 0.616111 GGGAAGGAGAGAGCAGTCCA 60.616 60.0 0.0 0.0 35.02 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2043 0.193574 AACCCCCTGAAGACTGGAGA 59.806 55.0 0.0 0.0 37.31 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 84 3.004210 CCATCTCTGACGACGAAGATGAT 59.996 47.826 21.78 16.06 36.28 2.45
121 124 1.326852 GACGACGCGAGATGAAGTAGA 59.673 52.381 15.93 0.00 0.00 2.59
122 125 1.062294 ACGACGCGAGATGAAGTAGAC 59.938 52.381 15.93 0.00 0.00 2.59
546 551 1.334384 GGGGAAGGAGAGAGCAGTCC 61.334 65.000 0.00 0.00 0.00 3.85
547 552 0.616111 GGGAAGGAGAGAGCAGTCCA 60.616 60.000 0.00 0.00 35.02 4.02
548 553 1.270907 GGAAGGAGAGAGCAGTCCAA 58.729 55.000 0.00 0.00 35.02 3.53
600 605 9.525826 AGATTTCTTTTACTCCATCAATCAAGT 57.474 29.630 0.00 0.00 0.00 3.16
748 761 1.063027 CACGTGCAGCATCTACATTGG 59.937 52.381 0.82 0.00 0.00 3.16
749 762 1.066215 ACGTGCAGCATCTACATTGGA 60.066 47.619 0.00 0.00 0.00 3.53
783 799 7.173907 GGATCCAGCCGATATAATCCATTATTG 59.826 40.741 6.95 0.00 34.91 1.90
797 813 7.999450 ATCCATTATTGTTTTTGGTTTGCAT 57.001 28.000 0.00 0.00 0.00 3.96
827 845 6.246420 ACATTGAGCTGTCAGATAAACAAC 57.754 37.500 3.32 0.00 32.98 3.32
830 848 3.072330 TGAGCTGTCAGATAAACAACCCA 59.928 43.478 3.32 0.00 0.00 4.51
951 976 3.812019 AGCACCGTCGTAGGCTCG 61.812 66.667 0.00 0.00 33.69 5.03
964 989 3.255379 GCTCGTCGCCATCCGTTC 61.255 66.667 0.00 0.00 38.35 3.95
975 1000 1.546029 CCATCCGTTCAGTGTCTCAGA 59.454 52.381 0.00 0.00 0.00 3.27
976 1001 2.416566 CCATCCGTTCAGTGTCTCAGAG 60.417 54.545 0.00 0.00 0.00 3.35
989 1014 2.193865 CTCAGAGTCTCAGCGTGCGT 62.194 60.000 1.94 0.00 0.00 5.24
1080 1105 1.301479 GGGCGAGAAGAACACCGTT 60.301 57.895 0.00 0.00 0.00 4.44
1158 1186 1.064906 AGGACTCAGGTATTCCGTCGA 60.065 52.381 0.00 0.00 39.05 4.20
1159 1187 1.955080 GGACTCAGGTATTCCGTCGAT 59.045 52.381 0.00 0.00 39.05 3.59
1160 1188 2.030981 GGACTCAGGTATTCCGTCGATC 60.031 54.545 0.00 0.00 39.05 3.69
1161 1189 2.879646 GACTCAGGTATTCCGTCGATCT 59.120 50.000 0.00 0.00 39.05 2.75
1164 1192 3.284617 TCAGGTATTCCGTCGATCTTCA 58.715 45.455 0.00 0.00 39.05 3.02
1165 1193 3.066342 TCAGGTATTCCGTCGATCTTCAC 59.934 47.826 0.00 0.00 39.05 3.18
1166 1194 3.021695 AGGTATTCCGTCGATCTTCACA 58.978 45.455 0.00 0.00 39.05 3.58
1167 1195 3.637229 AGGTATTCCGTCGATCTTCACAT 59.363 43.478 0.00 0.00 39.05 3.21
1168 1196 3.982058 GGTATTCCGTCGATCTTCACATC 59.018 47.826 0.00 0.00 0.00 3.06
1198 1250 1.812571 GTCATGTGGAAGAAACGCCAT 59.187 47.619 0.00 0.00 36.41 4.40
1211 1265 0.238289 ACGCCATCGCTCTTGTTTTG 59.762 50.000 0.00 0.00 39.84 2.44
1986 2043 2.653584 CGTCGAATAAAACGTGTCGAGT 59.346 45.455 8.27 0.00 42.66 4.18
2043 2100 6.373779 TGTTTCGCAATCAGAAAGATCTTTC 58.626 36.000 32.17 32.17 46.85 2.62
2103 2160 6.000891 ACGTGTAATCGTACTGTTAAGTGA 57.999 37.500 0.00 0.00 42.35 3.41
2125 2182 2.966050 TGTTGTTTGGTTGGAAGTTGC 58.034 42.857 0.00 0.00 0.00 4.17
2161 2218 1.309950 TCGATCGGGATCAGTGAGTC 58.690 55.000 16.41 0.00 37.69 3.36
2162 2219 1.134068 TCGATCGGGATCAGTGAGTCT 60.134 52.381 16.41 0.00 37.69 3.24
2163 2220 1.001924 CGATCGGGATCAGTGAGTCTG 60.002 57.143 7.38 0.00 44.85 3.51
2321 2391 1.484653 TGCACGTGACAGGCCTATATT 59.515 47.619 22.23 0.00 0.00 1.28
2387 2471 5.183331 GGGATCTGAACCTTAACCTTTGAAC 59.817 44.000 3.85 0.00 0.00 3.18
2415 2499 4.924305 AATCGATACCCTTTACGCACTA 57.076 40.909 0.00 0.00 0.00 2.74
2418 2502 4.613944 TCGATACCCTTTACGCACTAATG 58.386 43.478 0.00 0.00 0.00 1.90
2489 2573 9.448587 ACCAACCAGGATTATAGTCTACTATTT 57.551 33.333 7.89 0.00 41.22 1.40
2517 2601 8.524870 TTTTCGAATGTTGGTAGTAGTTCTAC 57.475 34.615 0.00 2.14 45.87 2.59
2533 2617 9.388506 AGTAGTTCTACCAAATTCATTGATCAG 57.611 33.333 6.39 0.00 41.85 2.90
2534 2618 9.383519 GTAGTTCTACCAAATTCATTGATCAGA 57.616 33.333 0.00 0.00 41.85 3.27
2535 2619 8.503458 AGTTCTACCAAATTCATTGATCAGAG 57.497 34.615 0.00 0.00 41.85 3.35
2536 2620 8.324306 AGTTCTACCAAATTCATTGATCAGAGA 58.676 33.333 0.00 0.00 41.85 3.10
2537 2621 8.950210 GTTCTACCAAATTCATTGATCAGAGAA 58.050 33.333 12.49 12.49 41.85 2.87
2538 2622 9.519191 TTCTACCAAATTCATTGATCAGAGAAA 57.481 29.630 13.67 1.38 41.85 2.52
2539 2623 9.519191 TCTACCAAATTCATTGATCAGAGAAAA 57.481 29.630 13.67 0.00 41.85 2.29
2540 2624 9.784680 CTACCAAATTCATTGATCAGAGAAAAG 57.215 33.333 13.67 8.16 41.85 2.27
2541 2625 8.413309 ACCAAATTCATTGATCAGAGAAAAGA 57.587 30.769 13.67 0.00 41.85 2.52
2542 2626 8.863086 ACCAAATTCATTGATCAGAGAAAAGAA 58.137 29.630 13.67 1.27 41.85 2.52
2543 2627 9.355215 CCAAATTCATTGATCAGAGAAAAGAAG 57.645 33.333 13.67 5.40 41.85 2.85
2544 2628 9.909644 CAAATTCATTGATCAGAGAAAAGAAGT 57.090 29.630 13.67 0.00 41.85 3.01
2547 2631 9.909644 ATTCATTGATCAGAGAAAAGAAGTTTG 57.090 29.630 13.67 0.00 0.00 2.93
2548 2632 7.879070 TCATTGATCAGAGAAAAGAAGTTTGG 58.121 34.615 0.00 0.00 0.00 3.28
2549 2633 7.503566 TCATTGATCAGAGAAAAGAAGTTTGGT 59.496 33.333 0.00 0.00 0.00 3.67
2550 2634 6.867662 TGATCAGAGAAAAGAAGTTTGGTC 57.132 37.500 0.00 0.00 0.00 4.02
2551 2635 5.765182 TGATCAGAGAAAAGAAGTTTGGTCC 59.235 40.000 0.00 0.00 0.00 4.46
2552 2636 5.110814 TCAGAGAAAAGAAGTTTGGTCCA 57.889 39.130 0.00 0.00 0.00 4.02
2553 2637 5.126067 TCAGAGAAAAGAAGTTTGGTCCAG 58.874 41.667 0.00 0.00 0.00 3.86
2554 2638 4.884164 CAGAGAAAAGAAGTTTGGTCCAGT 59.116 41.667 0.00 0.00 0.00 4.00
2555 2639 5.358160 CAGAGAAAAGAAGTTTGGTCCAGTT 59.642 40.000 0.00 0.00 0.00 3.16
2556 2640 5.952347 AGAGAAAAGAAGTTTGGTCCAGTTT 59.048 36.000 0.00 0.00 0.00 2.66
2557 2641 7.067008 CAGAGAAAAGAAGTTTGGTCCAGTTTA 59.933 37.037 0.00 0.00 0.00 2.01
2558 2642 7.780271 AGAGAAAAGAAGTTTGGTCCAGTTTAT 59.220 33.333 0.00 0.00 0.00 1.40
2559 2643 7.716612 AGAAAAGAAGTTTGGTCCAGTTTATG 58.283 34.615 0.00 0.00 0.00 1.90
2560 2644 7.559897 AGAAAAGAAGTTTGGTCCAGTTTATGA 59.440 33.333 0.00 0.00 0.00 2.15
2561 2645 6.884280 AAGAAGTTTGGTCCAGTTTATGAG 57.116 37.500 0.00 0.00 0.00 2.90
2562 2646 5.316987 AGAAGTTTGGTCCAGTTTATGAGG 58.683 41.667 0.00 0.00 0.00 3.86
2563 2647 4.993705 AGTTTGGTCCAGTTTATGAGGA 57.006 40.909 0.00 0.00 0.00 3.71
2564 2648 5.319043 AGTTTGGTCCAGTTTATGAGGAA 57.681 39.130 0.00 0.00 32.30 3.36
2565 2649 5.701224 AGTTTGGTCCAGTTTATGAGGAAA 58.299 37.500 0.00 0.00 32.30 3.13
2566 2650 6.133356 AGTTTGGTCCAGTTTATGAGGAAAA 58.867 36.000 0.00 0.00 32.30 2.29
2567 2651 6.040504 AGTTTGGTCCAGTTTATGAGGAAAAC 59.959 38.462 0.00 0.00 34.59 2.43
2568 2652 4.403734 TGGTCCAGTTTATGAGGAAAACC 58.596 43.478 0.00 0.00 37.51 3.27
2569 2653 3.439129 GGTCCAGTTTATGAGGAAAACCG 59.561 47.826 0.00 0.00 37.51 4.44
2570 2654 3.439129 GTCCAGTTTATGAGGAAAACCGG 59.561 47.826 0.00 0.00 37.51 5.28
2571 2655 3.328343 TCCAGTTTATGAGGAAAACCGGA 59.672 43.478 9.46 0.63 39.79 5.14
2572 2656 3.439129 CCAGTTTATGAGGAAAACCGGAC 59.561 47.826 9.46 0.00 36.79 4.79
2573 2657 3.439129 CAGTTTATGAGGAAAACCGGACC 59.561 47.826 9.46 6.01 37.51 4.46
2574 2658 3.073356 AGTTTATGAGGAAAACCGGACCA 59.927 43.478 9.46 0.00 37.51 4.02
2575 2659 3.791953 TTATGAGGAAAACCGGACCAA 57.208 42.857 9.46 0.00 0.00 3.67
2576 2660 2.668144 ATGAGGAAAACCGGACCAAA 57.332 45.000 9.46 0.00 0.00 3.28
2577 2661 2.438800 TGAGGAAAACCGGACCAAAA 57.561 45.000 9.46 0.00 0.00 2.44
2578 2662 2.736347 TGAGGAAAACCGGACCAAAAA 58.264 42.857 9.46 0.00 0.00 1.94
2595 2679 3.802948 AAAAACCATACAAACGGTGCA 57.197 38.095 0.00 0.00 35.08 4.57
2596 2680 3.802948 AAAACCATACAAACGGTGCAA 57.197 38.095 0.00 0.00 35.08 4.08
2597 2681 2.785713 AACCATACAAACGGTGCAAC 57.214 45.000 0.00 0.00 35.08 4.17
2598 2682 1.681538 ACCATACAAACGGTGCAACA 58.318 45.000 0.98 0.00 39.98 3.33
2599 2683 1.335496 ACCATACAAACGGTGCAACAC 59.665 47.619 0.98 0.00 39.98 3.32
2600 2684 1.335182 CCATACAAACGGTGCAACACA 59.665 47.619 0.98 0.00 39.98 3.72
2610 2694 3.796764 TGCAACACACACATCCTCA 57.203 47.368 0.00 0.00 0.00 3.86
2611 2695 1.308047 TGCAACACACACATCCTCAC 58.692 50.000 0.00 0.00 0.00 3.51
2612 2696 0.235665 GCAACACACACATCCTCACG 59.764 55.000 0.00 0.00 0.00 4.35
2613 2697 1.864565 CAACACACACATCCTCACGA 58.135 50.000 0.00 0.00 0.00 4.35
2614 2698 1.794701 CAACACACACATCCTCACGAG 59.205 52.381 0.00 0.00 0.00 4.18
2615 2699 0.319900 ACACACACATCCTCACGAGC 60.320 55.000 0.00 0.00 0.00 5.03
2616 2700 1.016130 CACACACATCCTCACGAGCC 61.016 60.000 0.00 0.00 0.00 4.70
2617 2701 1.293179 CACACATCCTCACGAGCCA 59.707 57.895 0.00 0.00 0.00 4.75
2618 2702 1.016130 CACACATCCTCACGAGCCAC 61.016 60.000 0.00 0.00 0.00 5.01
2622 2706 4.988716 TCCTCACGAGCCACGGGT 62.989 66.667 3.26 0.00 46.47 5.28
2623 2707 4.436998 CCTCACGAGCCACGGGTC 62.437 72.222 5.16 5.16 46.47 4.46
2624 2708 4.436998 CTCACGAGCCACGGGTCC 62.437 72.222 9.60 0.00 46.47 4.46
2629 2713 3.775654 GAGCCACGGGTCCCTCTG 61.776 72.222 6.29 0.70 36.72 3.35
2630 2714 4.316823 AGCCACGGGTCCCTCTGA 62.317 66.667 6.29 0.00 0.00 3.27
2631 2715 3.083997 GCCACGGGTCCCTCTGAT 61.084 66.667 6.29 0.00 0.00 2.90
2632 2716 3.095347 GCCACGGGTCCCTCTGATC 62.095 68.421 6.29 0.00 0.00 2.92
2633 2717 1.685765 CCACGGGTCCCTCTGATCA 60.686 63.158 6.29 0.00 0.00 2.92
2634 2718 1.680522 CCACGGGTCCCTCTGATCAG 61.681 65.000 17.07 17.07 0.00 2.90
2635 2719 0.684479 CACGGGTCCCTCTGATCAGA 60.684 60.000 23.75 23.75 35.85 3.27
2636 2720 0.263172 ACGGGTCCCTCTGATCAGAT 59.737 55.000 25.30 5.63 36.76 2.90
2637 2721 0.965439 CGGGTCCCTCTGATCAGATC 59.035 60.000 25.30 15.09 36.76 2.75
2638 2722 1.347062 GGGTCCCTCTGATCAGATCC 58.653 60.000 25.30 21.58 36.76 3.36
2639 2723 1.413662 GGGTCCCTCTGATCAGATCCA 60.414 57.143 25.30 9.43 36.76 3.41
2640 2724 1.691434 GGTCCCTCTGATCAGATCCAC 59.309 57.143 25.30 19.26 36.76 4.02
2641 2725 1.691434 GTCCCTCTGATCAGATCCACC 59.309 57.143 25.30 9.37 36.76 4.61
2642 2726 1.577729 TCCCTCTGATCAGATCCACCT 59.422 52.381 25.30 0.00 36.76 4.00
2643 2727 1.969923 CCCTCTGATCAGATCCACCTC 59.030 57.143 25.30 0.00 36.76 3.85
2644 2728 1.969923 CCTCTGATCAGATCCACCTCC 59.030 57.143 25.30 0.00 36.76 4.30
2645 2729 2.675583 CTCTGATCAGATCCACCTCCA 58.324 52.381 25.30 0.00 36.76 3.86
2646 2730 2.629137 CTCTGATCAGATCCACCTCCAG 59.371 54.545 25.30 6.40 36.76 3.86
2647 2731 1.693062 CTGATCAGATCCACCTCCAGG 59.307 57.143 18.34 0.00 42.17 4.45
2648 2732 1.291939 TGATCAGATCCACCTCCAGGA 59.708 52.381 8.00 0.00 39.97 3.86
2649 2733 1.691434 GATCAGATCCACCTCCAGGAC 59.309 57.143 0.00 0.00 38.13 3.85
2650 2734 0.684479 TCAGATCCACCTCCAGGACG 60.684 60.000 0.00 0.00 38.13 4.79
2651 2735 0.972983 CAGATCCACCTCCAGGACGT 60.973 60.000 0.00 0.00 38.13 4.34
2652 2736 0.252284 AGATCCACCTCCAGGACGTT 60.252 55.000 0.00 0.00 38.13 3.99
2653 2737 0.108138 GATCCACCTCCAGGACGTTG 60.108 60.000 0.00 0.00 38.13 4.10
2654 2738 2.185310 ATCCACCTCCAGGACGTTGC 62.185 60.000 0.00 0.00 38.13 4.17
2655 2739 2.358737 CACCTCCAGGACGTTGCC 60.359 66.667 0.00 0.00 38.94 4.52
2656 2740 3.637273 ACCTCCAGGACGTTGCCC 61.637 66.667 0.00 0.00 38.94 5.36
2657 2741 4.410400 CCTCCAGGACGTTGCCCC 62.410 72.222 0.00 0.00 37.39 5.80
2658 2742 4.410400 CTCCAGGACGTTGCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
2660 2744 4.278513 CCAGGACGTTGCCCCCAA 62.279 66.667 0.00 0.00 0.00 4.12
2661 2745 2.672996 CAGGACGTTGCCCCCAAG 60.673 66.667 0.00 0.00 0.00 3.61
2662 2746 2.852075 AGGACGTTGCCCCCAAGA 60.852 61.111 0.00 0.00 0.00 3.02
2663 2747 2.359975 GGACGTTGCCCCCAAGAG 60.360 66.667 0.00 0.00 0.00 2.85
2664 2748 2.359975 GACGTTGCCCCCAAGAGG 60.360 66.667 0.00 0.00 0.00 3.69
2674 2758 2.809601 CCAAGAGGGAACGCGACG 60.810 66.667 15.93 0.00 40.01 5.12
2675 2759 3.479269 CAAGAGGGAACGCGACGC 61.479 66.667 15.93 10.49 34.13 5.19
2676 2760 4.736896 AAGAGGGAACGCGACGCC 62.737 66.667 15.93 10.84 34.13 5.68
2681 2765 4.557605 GGAACGCGACGCCGGATA 62.558 66.667 15.93 0.00 36.06 2.59
2682 2766 3.022914 GAACGCGACGCCGGATAG 61.023 66.667 15.93 0.96 36.06 2.08
2694 2778 4.664677 GGATAGCGCCGCCATCGT 62.665 66.667 11.20 0.00 0.00 3.73
2695 2779 3.106407 GATAGCGCCGCCATCGTC 61.106 66.667 4.98 0.00 0.00 4.20
2696 2780 4.664677 ATAGCGCCGCCATCGTCC 62.665 66.667 4.98 0.00 0.00 4.79
2701 2785 4.286320 GCCGCCATCGTCCGATCT 62.286 66.667 0.00 0.00 31.62 2.75
2702 2786 2.916052 GCCGCCATCGTCCGATCTA 61.916 63.158 0.00 0.00 31.62 1.98
2703 2787 1.658114 CCGCCATCGTCCGATCTAA 59.342 57.895 0.00 0.00 31.62 2.10
2704 2788 0.031585 CCGCCATCGTCCGATCTAAA 59.968 55.000 0.00 0.00 31.62 1.85
2705 2789 1.129326 CGCCATCGTCCGATCTAAAC 58.871 55.000 0.00 0.00 31.62 2.01
2706 2790 1.269102 CGCCATCGTCCGATCTAAACT 60.269 52.381 0.00 0.00 31.62 2.66
2707 2791 2.031420 CGCCATCGTCCGATCTAAACTA 60.031 50.000 0.00 0.00 31.62 2.24
2708 2792 3.566523 GCCATCGTCCGATCTAAACTAG 58.433 50.000 0.00 0.00 31.62 2.57
2709 2793 3.252701 GCCATCGTCCGATCTAAACTAGA 59.747 47.826 0.00 0.00 39.50 2.43
2732 2816 3.603365 GGTTTTCCCCGGAGCATG 58.397 61.111 0.73 0.00 0.00 4.06
2733 2817 1.001393 GGTTTTCCCCGGAGCATGA 60.001 57.895 0.73 0.00 0.00 3.07
2734 2818 1.313091 GGTTTTCCCCGGAGCATGAC 61.313 60.000 0.73 0.00 0.00 3.06
2735 2819 0.608035 GTTTTCCCCGGAGCATGACA 60.608 55.000 0.73 0.00 0.00 3.58
2736 2820 0.322456 TTTTCCCCGGAGCATGACAG 60.322 55.000 0.73 0.00 0.00 3.51
2737 2821 2.196997 TTTCCCCGGAGCATGACAGG 62.197 60.000 0.73 0.00 0.00 4.00
2738 2822 3.083349 CCCCGGAGCATGACAGGA 61.083 66.667 0.73 0.00 0.00 3.86
2739 2823 2.669133 CCCCGGAGCATGACAGGAA 61.669 63.158 0.73 0.00 0.00 3.36
2740 2824 1.299648 CCCGGAGCATGACAGGAAA 59.700 57.895 0.73 0.00 0.00 3.13
2741 2825 0.322456 CCCGGAGCATGACAGGAAAA 60.322 55.000 0.73 0.00 0.00 2.29
2742 2826 1.089920 CCGGAGCATGACAGGAAAAG 58.910 55.000 0.00 0.00 0.00 2.27
2743 2827 0.449388 CGGAGCATGACAGGAAAAGC 59.551 55.000 0.00 0.00 0.00 3.51
2744 2828 1.538047 GGAGCATGACAGGAAAAGCA 58.462 50.000 0.00 0.00 0.00 3.91
2745 2829 1.888512 GGAGCATGACAGGAAAAGCAA 59.111 47.619 0.00 0.00 0.00 3.91
2746 2830 2.094854 GGAGCATGACAGGAAAAGCAAG 60.095 50.000 0.00 0.00 0.00 4.01
2747 2831 1.891150 AGCATGACAGGAAAAGCAAGG 59.109 47.619 0.00 0.00 0.00 3.61
2748 2832 1.615392 GCATGACAGGAAAAGCAAGGT 59.385 47.619 0.00 0.00 0.00 3.50
2749 2833 2.608752 GCATGACAGGAAAAGCAAGGTG 60.609 50.000 0.00 0.00 0.00 4.00
2750 2834 1.691196 TGACAGGAAAAGCAAGGTGG 58.309 50.000 0.00 0.00 0.00 4.61
2751 2835 0.961753 GACAGGAAAAGCAAGGTGGG 59.038 55.000 0.00 0.00 0.00 4.61
2752 2836 0.555769 ACAGGAAAAGCAAGGTGGGA 59.444 50.000 0.00 0.00 0.00 4.37
2753 2837 1.251251 CAGGAAAAGCAAGGTGGGAG 58.749 55.000 0.00 0.00 0.00 4.30
2754 2838 0.540597 AGGAAAAGCAAGGTGGGAGC 60.541 55.000 0.00 0.00 0.00 4.70
2755 2839 0.827507 GGAAAAGCAAGGTGGGAGCA 60.828 55.000 0.00 0.00 0.00 4.26
2756 2840 0.600057 GAAAAGCAAGGTGGGAGCAG 59.400 55.000 0.00 0.00 0.00 4.24
2757 2841 1.466851 AAAAGCAAGGTGGGAGCAGC 61.467 55.000 0.00 0.00 0.00 5.25
2758 2842 2.363292 AAAGCAAGGTGGGAGCAGCT 62.363 55.000 0.00 0.00 32.16 4.24
2759 2843 1.492133 AAGCAAGGTGGGAGCAGCTA 61.492 55.000 0.00 0.00 30.98 3.32
2760 2844 1.746991 GCAAGGTGGGAGCAGCTAC 60.747 63.158 0.00 0.00 32.03 3.58
2761 2845 1.679311 CAAGGTGGGAGCAGCTACA 59.321 57.895 7.05 0.48 32.03 2.74
2762 2846 0.254178 CAAGGTGGGAGCAGCTACAT 59.746 55.000 7.05 0.00 32.03 2.29
2763 2847 0.543749 AAGGTGGGAGCAGCTACATC 59.456 55.000 7.05 4.27 32.03 3.06
2764 2848 1.227380 GGTGGGAGCAGCTACATCG 60.227 63.158 7.05 0.00 0.00 3.84
2765 2849 1.676678 GGTGGGAGCAGCTACATCGA 61.677 60.000 7.05 0.00 0.00 3.59
2766 2850 0.390860 GTGGGAGCAGCTACATCGAT 59.609 55.000 7.05 0.00 0.00 3.59
2767 2851 0.390492 TGGGAGCAGCTACATCGATG 59.610 55.000 23.68 23.68 0.00 3.84
2768 2852 0.390860 GGGAGCAGCTACATCGATGT 59.609 55.000 31.93 31.93 44.48 3.06
2769 2853 1.604185 GGGAGCAGCTACATCGATGTC 60.604 57.143 33.11 20.24 41.97 3.06
2770 2854 1.339610 GGAGCAGCTACATCGATGTCT 59.660 52.381 33.11 23.04 41.97 3.41
2771 2855 2.223923 GGAGCAGCTACATCGATGTCTT 60.224 50.000 33.11 17.33 41.97 3.01
2772 2856 3.049206 GAGCAGCTACATCGATGTCTTC 58.951 50.000 33.11 21.75 41.97 2.87
2773 2857 2.428530 AGCAGCTACATCGATGTCTTCA 59.571 45.455 33.11 15.82 41.97 3.02
2774 2858 3.118992 AGCAGCTACATCGATGTCTTCAA 60.119 43.478 33.11 15.44 41.97 2.69
2775 2859 3.000724 GCAGCTACATCGATGTCTTCAAC 59.999 47.826 33.11 16.19 41.97 3.18
2776 2860 3.241553 CAGCTACATCGATGTCTTCAACG 59.758 47.826 33.11 13.30 41.97 4.10
2781 2865 1.541379 TCGATGTCTTCAACGAGGGA 58.459 50.000 0.00 0.00 42.22 4.20
2782 2866 1.472878 TCGATGTCTTCAACGAGGGAG 59.527 52.381 0.00 0.00 42.22 4.30
2783 2867 1.646189 GATGTCTTCAACGAGGGAGC 58.354 55.000 0.00 0.00 0.00 4.70
2784 2868 0.108615 ATGTCTTCAACGAGGGAGCG 60.109 55.000 0.00 0.00 37.29 5.03
2785 2869 1.176619 TGTCTTCAACGAGGGAGCGA 61.177 55.000 0.00 0.00 34.83 4.93
2786 2870 0.733223 GTCTTCAACGAGGGAGCGAC 60.733 60.000 0.00 0.00 34.83 5.19
2787 2871 1.801913 CTTCAACGAGGGAGCGACG 60.802 63.158 0.00 0.00 34.83 5.12
2788 2872 3.909258 TTCAACGAGGGAGCGACGC 62.909 63.158 13.03 13.03 34.83 5.19
2793 2877 3.760035 GAGGGAGCGACGCCAGAA 61.760 66.667 17.79 0.00 0.00 3.02
2794 2878 3.708220 GAGGGAGCGACGCCAGAAG 62.708 68.421 17.79 0.00 0.00 2.85
2795 2879 4.821589 GGGAGCGACGCCAGAAGG 62.822 72.222 17.79 0.00 38.23 3.46
2815 2899 4.907034 CCGCCATCGACGACTCCG 62.907 72.222 0.00 2.69 42.50 4.63
2816 2900 4.907034 CGCCATCGACGACTCCGG 62.907 72.222 0.00 0.00 40.78 5.14
2817 2901 3.515286 GCCATCGACGACTCCGGA 61.515 66.667 2.93 2.93 40.78 5.14
2818 2902 2.408022 CCATCGACGACTCCGGAC 59.592 66.667 0.00 0.00 40.78 4.79
2819 2903 2.404186 CCATCGACGACTCCGGACA 61.404 63.158 0.00 0.00 40.78 4.02
2820 2904 1.226323 CATCGACGACTCCGGACAC 60.226 63.158 0.00 0.00 40.78 3.67
2821 2905 1.673337 ATCGACGACTCCGGACACA 60.673 57.895 0.00 0.00 40.78 3.72
2822 2906 1.645704 ATCGACGACTCCGGACACAG 61.646 60.000 0.00 0.00 40.78 3.66
2823 2907 2.126424 GACGACTCCGGACACAGC 60.126 66.667 0.00 0.00 40.78 4.40
2824 2908 3.628280 GACGACTCCGGACACAGCC 62.628 68.421 0.00 0.00 40.78 4.85
2832 2916 2.181021 GGACACAGCCGGAGTACG 59.819 66.667 5.05 0.00 43.80 3.67
2842 2926 4.068302 GGAGTACGACTTTCGCCG 57.932 61.111 0.00 0.00 45.12 6.46
2843 2927 1.515736 GGAGTACGACTTTCGCCGG 60.516 63.158 0.00 0.00 45.12 6.13
2844 2928 2.126189 AGTACGACTTTCGCCGGC 60.126 61.111 19.07 19.07 45.12 6.13
2845 2929 3.184003 GTACGACTTTCGCCGGCC 61.184 66.667 23.46 4.12 45.12 6.13
2846 2930 4.781959 TACGACTTTCGCCGGCCG 62.782 66.667 23.46 21.04 45.12 6.13
2849 2933 4.736896 GACTTTCGCCGGCCGTCT 62.737 66.667 26.12 0.00 38.35 4.18
2850 2934 4.736896 ACTTTCGCCGGCCGTCTC 62.737 66.667 26.12 11.79 38.35 3.36
2851 2935 4.735132 CTTTCGCCGGCCGTCTCA 62.735 66.667 26.12 1.73 38.35 3.27
2856 2940 4.509737 GCCGGCCGTCTCACCTAC 62.510 72.222 26.12 0.00 0.00 3.18
2857 2941 3.066190 CCGGCCGTCTCACCTACA 61.066 66.667 26.12 0.00 0.00 2.74
2858 2942 2.181021 CGGCCGTCTCACCTACAC 59.819 66.667 19.50 0.00 0.00 2.90
2859 2943 2.632544 CGGCCGTCTCACCTACACA 61.633 63.158 19.50 0.00 0.00 3.72
2860 2944 1.215647 GGCCGTCTCACCTACACAG 59.784 63.158 0.00 0.00 0.00 3.66
2861 2945 1.446272 GCCGTCTCACCTACACAGC 60.446 63.158 0.00 0.00 0.00 4.40
2862 2946 1.878656 GCCGTCTCACCTACACAGCT 61.879 60.000 0.00 0.00 0.00 4.24
2863 2947 0.171455 CCGTCTCACCTACACAGCTC 59.829 60.000 0.00 0.00 0.00 4.09
2864 2948 0.179187 CGTCTCACCTACACAGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
2865 2949 1.166129 GTCTCACCTACACAGCTCGA 58.834 55.000 0.00 0.00 0.00 4.04
2866 2950 1.131504 GTCTCACCTACACAGCTCGAG 59.868 57.143 8.45 8.45 0.00 4.04
2867 2951 0.179150 CTCACCTACACAGCTCGAGC 60.179 60.000 30.01 30.01 42.49 5.03
2868 2952 1.153745 CACCTACACAGCTCGAGCC 60.154 63.158 32.94 15.76 43.38 4.70
2869 2953 2.352032 ACCTACACAGCTCGAGCCC 61.352 63.158 32.94 7.95 43.38 5.19
2870 2954 2.351244 CCTACACAGCTCGAGCCCA 61.351 63.158 32.94 13.09 43.38 5.36
2871 2955 1.140589 CTACACAGCTCGAGCCCAG 59.859 63.158 32.94 24.31 43.38 4.45
2872 2956 2.290122 CTACACAGCTCGAGCCCAGG 62.290 65.000 32.94 21.61 43.38 4.45
2873 2957 2.781431 TACACAGCTCGAGCCCAGGA 62.781 60.000 32.94 17.08 43.38 3.86
2874 2958 2.364842 ACAGCTCGAGCCCAGGAT 60.365 61.111 32.94 11.52 43.38 3.24
2875 2959 2.420890 CAGCTCGAGCCCAGGATC 59.579 66.667 32.94 3.92 43.38 3.36
2876 2960 2.841988 AGCTCGAGCCCAGGATCC 60.842 66.667 32.94 2.48 43.38 3.36
2877 2961 4.292178 GCTCGAGCCCAGGATCCG 62.292 72.222 27.22 1.07 34.31 4.18
2878 2962 2.519541 CTCGAGCCCAGGATCCGA 60.520 66.667 5.98 0.00 0.00 4.55
2879 2963 1.905843 CTCGAGCCCAGGATCCGAT 60.906 63.158 5.98 0.00 0.00 4.18
2880 2964 1.872197 CTCGAGCCCAGGATCCGATC 61.872 65.000 5.98 0.00 0.00 3.69
2881 2965 2.203082 CGAGCCCAGGATCCGATCA 61.203 63.158 5.98 0.00 0.00 2.92
2882 2966 1.670590 GAGCCCAGGATCCGATCAG 59.329 63.158 5.98 2.38 0.00 2.90
2883 2967 2.031768 GCCCAGGATCCGATCAGC 59.968 66.667 5.98 2.80 0.00 4.26
2884 2968 2.746359 CCCAGGATCCGATCAGCC 59.254 66.667 5.98 0.00 0.00 4.85
2885 2969 1.840650 CCCAGGATCCGATCAGCCT 60.841 63.158 5.98 0.00 0.00 4.58
2886 2970 0.542938 CCCAGGATCCGATCAGCCTA 60.543 60.000 5.98 0.00 0.00 3.93
2887 2971 0.605589 CCAGGATCCGATCAGCCTAC 59.394 60.000 5.98 0.00 0.00 3.18
2888 2972 1.332195 CAGGATCCGATCAGCCTACA 58.668 55.000 5.98 0.00 0.00 2.74
2889 2973 1.000283 CAGGATCCGATCAGCCTACAC 60.000 57.143 5.98 0.00 0.00 2.90
2890 2974 1.040646 GGATCCGATCAGCCTACACA 58.959 55.000 10.56 0.00 0.00 3.72
2891 2975 1.269831 GGATCCGATCAGCCTACACAC 60.270 57.143 10.56 0.00 0.00 3.82
2892 2976 0.753262 ATCCGATCAGCCTACACACC 59.247 55.000 0.00 0.00 0.00 4.16
2893 2977 0.613572 TCCGATCAGCCTACACACCA 60.614 55.000 0.00 0.00 0.00 4.17
2894 2978 0.249120 CCGATCAGCCTACACACCAA 59.751 55.000 0.00 0.00 0.00 3.67
2895 2979 1.338674 CCGATCAGCCTACACACCAAA 60.339 52.381 0.00 0.00 0.00 3.28
2896 2980 1.732259 CGATCAGCCTACACACCAAAC 59.268 52.381 0.00 0.00 0.00 2.93
2897 2981 2.612972 CGATCAGCCTACACACCAAACT 60.613 50.000 0.00 0.00 0.00 2.66
2898 2982 3.368013 CGATCAGCCTACACACCAAACTA 60.368 47.826 0.00 0.00 0.00 2.24
2899 2983 3.396260 TCAGCCTACACACCAAACTAC 57.604 47.619 0.00 0.00 0.00 2.73
2900 2984 2.969950 TCAGCCTACACACCAAACTACT 59.030 45.455 0.00 0.00 0.00 2.57
2901 2985 4.154176 TCAGCCTACACACCAAACTACTA 58.846 43.478 0.00 0.00 0.00 1.82
2902 2986 4.021719 TCAGCCTACACACCAAACTACTAC 60.022 45.833 0.00 0.00 0.00 2.73
2903 2987 3.260128 AGCCTACACACCAAACTACTACC 59.740 47.826 0.00 0.00 0.00 3.18
2904 2988 3.618263 GCCTACACACCAAACTACTACCC 60.618 52.174 0.00 0.00 0.00 3.69
2905 2989 3.055602 CCTACACACCAAACTACTACCCC 60.056 52.174 0.00 0.00 0.00 4.95
2906 2990 2.697967 ACACACCAAACTACTACCCCT 58.302 47.619 0.00 0.00 0.00 4.79
2907 2991 2.370849 ACACACCAAACTACTACCCCTG 59.629 50.000 0.00 0.00 0.00 4.45
2908 2992 1.350019 ACACCAAACTACTACCCCTGC 59.650 52.381 0.00 0.00 0.00 4.85
2909 2993 0.989602 ACCAAACTACTACCCCTGCC 59.010 55.000 0.00 0.00 0.00 4.85
2910 2994 1.286248 CCAAACTACTACCCCTGCCT 58.714 55.000 0.00 0.00 0.00 4.75
2911 2995 1.209747 CCAAACTACTACCCCTGCCTC 59.790 57.143 0.00 0.00 0.00 4.70
2912 2996 1.209747 CAAACTACTACCCCTGCCTCC 59.790 57.143 0.00 0.00 0.00 4.30
2913 2997 0.416231 AACTACTACCCCTGCCTCCA 59.584 55.000 0.00 0.00 0.00 3.86
2914 2998 0.325390 ACTACTACCCCTGCCTCCAC 60.325 60.000 0.00 0.00 0.00 4.02
2915 2999 1.380785 TACTACCCCTGCCTCCACG 60.381 63.158 0.00 0.00 0.00 4.94
2916 3000 2.866523 TACTACCCCTGCCTCCACGG 62.867 65.000 0.00 0.00 0.00 4.94
2941 3025 4.431131 CACCTCCCCGGCAAGCAT 62.431 66.667 0.00 0.00 35.61 3.79
2942 3026 4.431131 ACCTCCCCGGCAAGCATG 62.431 66.667 0.00 0.00 35.61 4.06
2943 3027 4.113815 CCTCCCCGGCAAGCATGA 62.114 66.667 0.00 0.00 0.00 3.07
2944 3028 2.825836 CTCCCCGGCAAGCATGAC 60.826 66.667 0.00 0.00 0.00 3.06
2945 3029 3.329889 TCCCCGGCAAGCATGACT 61.330 61.111 0.00 0.00 29.70 3.41
2946 3030 2.361610 CCCCGGCAAGCATGACTT 60.362 61.111 0.00 0.00 40.05 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
531 536 5.505181 TTTAATTGGACTGCTCTCTCCTT 57.495 39.130 0.00 0.00 0.00 3.36
532 537 5.707066 ATTTAATTGGACTGCTCTCTCCT 57.293 39.130 0.00 0.00 0.00 3.69
617 630 7.422399 GTGGTTGCTTAGACAATTTGTAGAAA 58.578 34.615 1.15 0.00 0.00 2.52
703 716 7.704472 TGTATATATTTCTTTTGCCTTTTGCCG 59.296 33.333 0.00 0.00 40.16 5.69
720 733 6.687604 TGTAGATGCTGCACGTGTATATATT 58.312 36.000 18.38 1.65 0.00 1.28
748 761 3.830679 GGCTGGATCCGATCTCATC 57.169 57.895 7.39 1.35 0.00 2.92
771 784 8.908786 TGCAAACCAAAAACAATAATGGATTA 57.091 26.923 0.00 0.00 36.75 1.75
809 827 3.674997 TGGGTTGTTTATCTGACAGCTC 58.325 45.455 0.00 0.00 30.38 4.09
827 845 1.803366 GCGTCGGAGGGTATACTGGG 61.803 65.000 2.25 0.00 0.00 4.45
830 848 0.394762 TGTGCGTCGGAGGGTATACT 60.395 55.000 2.25 0.00 0.00 2.12
951 976 1.352156 GACACTGAACGGATGGCGAC 61.352 60.000 0.00 0.00 0.00 5.19
964 989 1.135717 CGCTGAGACTCTGAGACACTG 60.136 57.143 12.44 9.08 0.00 3.66
975 1000 2.049985 GACACGCACGCTGAGACT 60.050 61.111 0.00 0.00 0.00 3.24
976 1001 2.049985 AGACACGCACGCTGAGAC 60.050 61.111 0.00 0.00 0.00 3.36
989 1014 1.144716 GCCGCCATCAGATCAGACA 59.855 57.895 0.00 0.00 0.00 3.41
1158 1186 1.141657 CGGACATGGGGATGTGAAGAT 59.858 52.381 0.00 0.00 34.45 2.40
1159 1187 0.541392 CGGACATGGGGATGTGAAGA 59.459 55.000 0.00 0.00 34.45 2.87
1160 1188 0.253044 ACGGACATGGGGATGTGAAG 59.747 55.000 0.00 0.00 34.45 3.02
1161 1189 0.251916 GACGGACATGGGGATGTGAA 59.748 55.000 0.00 0.00 34.45 3.18
1164 1192 2.620234 ATGACGGACATGGGGATGT 58.380 52.632 0.00 0.00 37.87 3.06
1211 1265 2.664436 CGTTCTTTCCCCGTCGCAC 61.664 63.158 0.00 0.00 0.00 5.34
1267 1321 4.152625 GCACCGACGCATGCAGAC 62.153 66.667 19.57 9.87 41.65 3.51
1872 1929 4.509737 GACACCGTAGCCGCCTCC 62.510 72.222 0.00 0.00 0.00 4.30
1986 2043 0.193574 AACCCCCTGAAGACTGGAGA 59.806 55.000 0.00 0.00 37.31 3.71
2043 2100 0.318441 TGGTCTCCAAAGCTGACGAG 59.682 55.000 0.00 0.00 0.00 4.18
2103 2160 3.938334 GCAACTTCCAACCAAACAACAAT 59.062 39.130 0.00 0.00 0.00 2.71
2125 2182 0.678395 CGATCCTGATCTGGACCCAG 59.322 60.000 22.30 9.74 44.86 4.45
2161 2218 4.272018 CAGAAACCACTTCTTCACAGACAG 59.728 45.833 0.00 0.00 41.97 3.51
2162 2219 4.081142 TCAGAAACCACTTCTTCACAGACA 60.081 41.667 0.00 0.00 41.97 3.41
2163 2220 4.271291 GTCAGAAACCACTTCTTCACAGAC 59.729 45.833 0.00 0.00 41.97 3.51
2321 2391 3.500448 TTTGACTGATGTGGCACCTAA 57.500 42.857 16.26 0.00 0.00 2.69
2367 2451 4.466827 GGGTTCAAAGGTTAAGGTTCAGA 58.533 43.478 0.00 0.00 0.00 3.27
2387 2471 0.763035 AAGGGTATCGATTTCCGGGG 59.237 55.000 1.71 0.00 39.14 5.73
2426 2510 1.682849 CATCAACCAGGGTCGGGAA 59.317 57.895 0.00 0.00 0.00 3.97
2491 2575 8.981647 GTAGAACTACTACCAACATTCGAAAAA 58.018 33.333 0.00 0.00 43.90 1.94
2492 2576 8.524870 GTAGAACTACTACCAACATTCGAAAA 57.475 34.615 0.00 0.00 43.90 2.29
2507 2591 9.388506 CTGATCAATGAATTTGGTAGAACTACT 57.611 33.333 11.04 0.00 35.92 2.57
2508 2592 9.383519 TCTGATCAATGAATTTGGTAGAACTAC 57.616 33.333 0.00 3.66 35.92 2.73
2509 2593 9.605275 CTCTGATCAATGAATTTGGTAGAACTA 57.395 33.333 0.00 0.00 35.92 2.24
2510 2594 8.324306 TCTCTGATCAATGAATTTGGTAGAACT 58.676 33.333 0.00 0.00 35.92 3.01
2511 2595 8.498054 TCTCTGATCAATGAATTTGGTAGAAC 57.502 34.615 0.00 0.00 35.92 3.01
2512 2596 9.519191 TTTCTCTGATCAATGAATTTGGTAGAA 57.481 29.630 9.83 0.00 35.92 2.10
2513 2597 9.519191 TTTTCTCTGATCAATGAATTTGGTAGA 57.481 29.630 9.83 0.00 35.92 2.59
2514 2598 9.784680 CTTTTCTCTGATCAATGAATTTGGTAG 57.215 33.333 9.83 0.00 35.92 3.18
2515 2599 9.519191 TCTTTTCTCTGATCAATGAATTTGGTA 57.481 29.630 9.83 0.00 35.92 3.25
2516 2600 8.413309 TCTTTTCTCTGATCAATGAATTTGGT 57.587 30.769 9.83 0.00 35.92 3.67
2517 2601 9.355215 CTTCTTTTCTCTGATCAATGAATTTGG 57.645 33.333 9.83 3.61 35.92 3.28
2518 2602 9.909644 ACTTCTTTTCTCTGATCAATGAATTTG 57.090 29.630 9.83 5.33 36.61 2.32
2521 2605 9.909644 CAAACTTCTTTTCTCTGATCAATGAAT 57.090 29.630 9.83 0.00 0.00 2.57
2522 2606 8.355169 CCAAACTTCTTTTCTCTGATCAATGAA 58.645 33.333 0.00 1.37 0.00 2.57
2523 2607 7.503566 ACCAAACTTCTTTTCTCTGATCAATGA 59.496 33.333 0.00 0.00 0.00 2.57
2524 2608 7.655490 ACCAAACTTCTTTTCTCTGATCAATG 58.345 34.615 0.00 0.00 0.00 2.82
2525 2609 7.040132 GGACCAAACTTCTTTTCTCTGATCAAT 60.040 37.037 0.00 0.00 0.00 2.57
2526 2610 6.263168 GGACCAAACTTCTTTTCTCTGATCAA 59.737 38.462 0.00 0.00 0.00 2.57
2527 2611 5.765182 GGACCAAACTTCTTTTCTCTGATCA 59.235 40.000 0.00 0.00 0.00 2.92
2528 2612 5.765182 TGGACCAAACTTCTTTTCTCTGATC 59.235 40.000 0.00 0.00 0.00 2.92
2529 2613 5.694995 TGGACCAAACTTCTTTTCTCTGAT 58.305 37.500 0.00 0.00 0.00 2.90
2530 2614 5.110814 TGGACCAAACTTCTTTTCTCTGA 57.889 39.130 0.00 0.00 0.00 3.27
2531 2615 4.884164 ACTGGACCAAACTTCTTTTCTCTG 59.116 41.667 0.00 0.00 0.00 3.35
2532 2616 5.117406 ACTGGACCAAACTTCTTTTCTCT 57.883 39.130 0.00 0.00 0.00 3.10
2533 2617 5.836821 AACTGGACCAAACTTCTTTTCTC 57.163 39.130 0.00 0.00 0.00 2.87
2534 2618 7.559897 TCATAAACTGGACCAAACTTCTTTTCT 59.440 33.333 0.00 0.00 0.00 2.52
2535 2619 7.712797 TCATAAACTGGACCAAACTTCTTTTC 58.287 34.615 0.00 0.00 0.00 2.29
2536 2620 7.201911 CCTCATAAACTGGACCAAACTTCTTTT 60.202 37.037 0.00 0.00 0.00 2.27
2537 2621 6.265422 CCTCATAAACTGGACCAAACTTCTTT 59.735 38.462 0.00 0.00 0.00 2.52
2538 2622 5.770162 CCTCATAAACTGGACCAAACTTCTT 59.230 40.000 0.00 0.00 0.00 2.52
2539 2623 5.073144 TCCTCATAAACTGGACCAAACTTCT 59.927 40.000 0.00 0.00 0.00 2.85
2540 2624 5.313712 TCCTCATAAACTGGACCAAACTTC 58.686 41.667 0.00 0.00 0.00 3.01
2541 2625 5.319043 TCCTCATAAACTGGACCAAACTT 57.681 39.130 0.00 0.00 0.00 2.66
2542 2626 4.993705 TCCTCATAAACTGGACCAAACT 57.006 40.909 0.00 0.00 0.00 2.66
2543 2627 6.213677 GTTTTCCTCATAAACTGGACCAAAC 58.786 40.000 0.00 0.00 33.71 2.93
2544 2628 5.303333 GGTTTTCCTCATAAACTGGACCAAA 59.697 40.000 0.00 0.00 36.12 3.28
2545 2629 4.830600 GGTTTTCCTCATAAACTGGACCAA 59.169 41.667 0.00 0.00 36.12 3.67
2546 2630 4.403734 GGTTTTCCTCATAAACTGGACCA 58.596 43.478 0.00 0.00 36.12 4.02
2547 2631 3.439129 CGGTTTTCCTCATAAACTGGACC 59.561 47.826 0.00 0.00 37.92 4.46
2548 2632 4.680171 CGGTTTTCCTCATAAACTGGAC 57.320 45.455 0.00 0.00 37.92 4.02
2551 2635 3.439129 GGTCCGGTTTTCCTCATAAACTG 59.561 47.826 0.00 0.00 40.12 3.16
2552 2636 3.073356 TGGTCCGGTTTTCCTCATAAACT 59.927 43.478 0.00 0.00 36.12 2.66
2553 2637 3.414269 TGGTCCGGTTTTCCTCATAAAC 58.586 45.455 0.00 0.00 37.95 2.01
2554 2638 3.791953 TGGTCCGGTTTTCCTCATAAA 57.208 42.857 0.00 0.00 37.95 1.40
2555 2639 3.791953 TTGGTCCGGTTTTCCTCATAA 57.208 42.857 0.00 0.00 37.95 1.90
2556 2640 3.791953 TTTGGTCCGGTTTTCCTCATA 57.208 42.857 0.00 0.00 37.95 2.15
2557 2641 2.668144 TTTGGTCCGGTTTTCCTCAT 57.332 45.000 0.00 0.00 37.95 2.90
2558 2642 2.438800 TTTTGGTCCGGTTTTCCTCA 57.561 45.000 0.00 0.00 37.95 3.86
2575 2659 3.802948 TGCACCGTTTGTATGGTTTTT 57.197 38.095 0.00 0.00 41.89 1.94
2576 2660 3.119101 TGTTGCACCGTTTGTATGGTTTT 60.119 39.130 0.00 0.00 41.89 2.43
2577 2661 2.427453 TGTTGCACCGTTTGTATGGTTT 59.573 40.909 0.00 0.00 41.89 3.27
2578 2662 2.025155 TGTTGCACCGTTTGTATGGTT 58.975 42.857 0.00 0.00 41.89 3.67
2579 2663 1.335496 GTGTTGCACCGTTTGTATGGT 59.665 47.619 0.00 0.00 44.74 3.55
2580 2664 1.335182 TGTGTTGCACCGTTTGTATGG 59.665 47.619 0.00 0.00 36.44 2.74
2581 2665 2.380660 GTGTGTTGCACCGTTTGTATG 58.619 47.619 0.00 0.00 42.10 2.39
2582 2666 2.766970 GTGTGTTGCACCGTTTGTAT 57.233 45.000 0.00 0.00 42.10 2.29
2592 2676 1.308047 GTGAGGATGTGTGTGTTGCA 58.692 50.000 0.00 0.00 0.00 4.08
2593 2677 0.235665 CGTGAGGATGTGTGTGTTGC 59.764 55.000 0.00 0.00 0.00 4.17
2594 2678 1.794701 CTCGTGAGGATGTGTGTGTTG 59.205 52.381 0.00 0.00 0.00 3.33
2595 2679 1.873903 GCTCGTGAGGATGTGTGTGTT 60.874 52.381 0.00 0.00 0.00 3.32
2596 2680 0.319900 GCTCGTGAGGATGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
2597 2681 1.016130 GGCTCGTGAGGATGTGTGTG 61.016 60.000 0.00 0.00 0.00 3.82
2598 2682 1.293498 GGCTCGTGAGGATGTGTGT 59.707 57.895 0.00 0.00 0.00 3.72
2599 2683 1.016130 GTGGCTCGTGAGGATGTGTG 61.016 60.000 0.00 0.00 0.00 3.82
2600 2684 1.293498 GTGGCTCGTGAGGATGTGT 59.707 57.895 0.00 0.00 0.00 3.72
2601 2685 1.807165 CGTGGCTCGTGAGGATGTG 60.807 63.158 0.00 0.00 34.52 3.21
2602 2686 2.573869 CGTGGCTCGTGAGGATGT 59.426 61.111 0.00 0.00 34.52 3.06
2603 2687 2.202797 CCGTGGCTCGTGAGGATG 60.203 66.667 8.25 0.00 37.94 3.51
2604 2688 3.461773 CCCGTGGCTCGTGAGGAT 61.462 66.667 8.25 0.00 37.94 3.24
2605 2689 4.988716 ACCCGTGGCTCGTGAGGA 62.989 66.667 8.25 0.00 37.94 3.71
2606 2690 4.436998 GACCCGTGGCTCGTGAGG 62.437 72.222 8.25 4.83 37.94 3.86
2607 2691 4.436998 GGACCCGTGGCTCGTGAG 62.437 72.222 8.25 0.00 37.94 3.51
2612 2696 3.775654 CAGAGGGACCCGTGGCTC 61.776 72.222 4.40 0.00 0.00 4.70
2613 2697 3.625632 ATCAGAGGGACCCGTGGCT 62.626 63.158 14.21 4.61 0.00 4.75
2614 2698 3.083997 ATCAGAGGGACCCGTGGC 61.084 66.667 14.21 2.49 0.00 5.01
2615 2699 1.680522 CTGATCAGAGGGACCCGTGG 61.681 65.000 18.34 4.38 0.00 4.94
2616 2700 0.684479 TCTGATCAGAGGGACCCGTG 60.684 60.000 21.67 7.25 32.82 4.94
2617 2701 0.263172 ATCTGATCAGAGGGACCCGT 59.737 55.000 28.26 8.36 41.33 5.28
2618 2702 0.965439 GATCTGATCAGAGGGACCCG 59.035 60.000 28.26 0.00 41.33 5.28
2619 2703 1.347062 GGATCTGATCAGAGGGACCC 58.653 60.000 28.26 19.06 41.33 4.46
2620 2704 1.691434 GTGGATCTGATCAGAGGGACC 59.309 57.143 28.26 24.95 41.33 4.46
2621 2705 1.691434 GGTGGATCTGATCAGAGGGAC 59.309 57.143 28.26 21.78 41.33 4.46
2622 2706 1.577729 AGGTGGATCTGATCAGAGGGA 59.422 52.381 28.26 12.88 41.33 4.20
2623 2707 1.969923 GAGGTGGATCTGATCAGAGGG 59.030 57.143 28.26 2.32 41.33 4.30
2624 2708 1.969923 GGAGGTGGATCTGATCAGAGG 59.030 57.143 28.26 2.71 41.33 3.69
2625 2709 2.629137 CTGGAGGTGGATCTGATCAGAG 59.371 54.545 28.26 8.93 41.33 3.35
2626 2710 2.675583 CTGGAGGTGGATCTGATCAGA 58.324 52.381 27.03 27.03 42.37 3.27
2627 2711 1.693062 CCTGGAGGTGGATCTGATCAG 59.307 57.143 17.07 17.07 0.00 2.90
2628 2712 1.291939 TCCTGGAGGTGGATCTGATCA 59.708 52.381 18.64 0.00 36.34 2.92
2629 2713 1.691434 GTCCTGGAGGTGGATCTGATC 59.309 57.143 9.18 9.18 35.87 2.92
2630 2714 1.799933 GTCCTGGAGGTGGATCTGAT 58.200 55.000 0.00 0.00 35.87 2.90
2631 2715 0.684479 CGTCCTGGAGGTGGATCTGA 60.684 60.000 8.22 0.00 35.87 3.27
2632 2716 0.972983 ACGTCCTGGAGGTGGATCTG 60.973 60.000 20.34 0.00 35.87 2.90
2633 2717 0.252284 AACGTCCTGGAGGTGGATCT 60.252 55.000 21.55 3.96 35.87 2.75
2634 2718 0.108138 CAACGTCCTGGAGGTGGATC 60.108 60.000 21.55 0.00 35.87 3.36
2635 2719 1.983224 CAACGTCCTGGAGGTGGAT 59.017 57.895 21.55 4.69 35.87 3.41
2636 2720 2.879233 GCAACGTCCTGGAGGTGGA 61.879 63.158 24.41 0.00 36.34 4.02
2637 2721 2.358737 GCAACGTCCTGGAGGTGG 60.359 66.667 21.55 19.51 36.34 4.61
2638 2722 2.358737 GGCAACGTCCTGGAGGTG 60.359 66.667 21.55 15.90 36.34 4.00
2639 2723 3.637273 GGGCAACGTCCTGGAGGT 61.637 66.667 15.89 15.89 34.72 3.85
2640 2724 4.410400 GGGGCAACGTCCTGGAGG 62.410 72.222 14.51 14.51 37.60 4.30
2641 2725 4.410400 GGGGGCAACGTCCTGGAG 62.410 72.222 0.00 0.00 37.60 3.86
2643 2727 4.278513 TTGGGGGCAACGTCCTGG 62.279 66.667 0.00 0.00 37.60 4.45
2644 2728 2.672996 CTTGGGGGCAACGTCCTG 60.673 66.667 0.00 0.00 37.60 3.86
2645 2729 2.852075 TCTTGGGGGCAACGTCCT 60.852 61.111 0.00 0.00 37.60 3.85
2646 2730 2.359975 CTCTTGGGGGCAACGTCC 60.360 66.667 0.00 0.00 37.60 4.79
2647 2731 2.359975 CCTCTTGGGGGCAACGTC 60.360 66.667 0.00 0.00 37.60 4.34
2657 2741 2.809601 CGTCGCGTTCCCTCTTGG 60.810 66.667 5.77 0.00 0.00 3.61
2658 2742 3.479269 GCGTCGCGTTCCCTCTTG 61.479 66.667 5.77 0.00 0.00 3.02
2659 2743 4.736896 GGCGTCGCGTTCCCTCTT 62.737 66.667 11.75 0.00 0.00 2.85
2664 2748 4.557605 TATCCGGCGTCGCGTTCC 62.558 66.667 11.75 4.93 34.56 3.62
2665 2749 3.022914 CTATCCGGCGTCGCGTTC 61.023 66.667 11.75 0.00 34.56 3.95
2677 2761 4.664677 ACGATGGCGGCGCTATCC 62.665 66.667 39.82 26.84 42.28 2.59
2678 2762 3.106407 GACGATGGCGGCGCTATC 61.106 66.667 38.01 38.01 41.94 2.08
2685 2769 0.031585 TTTAGATCGGACGATGGCGG 59.968 55.000 12.40 0.00 43.17 6.13
2686 2770 1.129326 GTTTAGATCGGACGATGGCG 58.871 55.000 12.40 0.00 44.79 5.69
2687 2771 2.510768 AGTTTAGATCGGACGATGGC 57.489 50.000 12.40 0.00 34.60 4.40
2688 2772 5.630661 ATCTAGTTTAGATCGGACGATGG 57.369 43.478 12.40 0.00 41.55 3.51
2697 2781 7.499563 GGGAAAACCCTTGATCTAGTTTAGATC 59.500 40.741 15.78 15.78 46.02 2.75
2698 2782 7.347252 GGGAAAACCCTTGATCTAGTTTAGAT 58.653 38.462 3.47 0.00 40.60 1.98
2699 2783 6.718294 GGGAAAACCCTTGATCTAGTTTAGA 58.282 40.000 3.47 0.00 35.57 2.10
2715 2799 1.001393 TCATGCTCCGGGGAAAACC 60.001 57.895 4.80 0.00 39.11 3.27
2716 2800 0.608035 TGTCATGCTCCGGGGAAAAC 60.608 55.000 4.80 0.00 0.00 2.43
2717 2801 0.322456 CTGTCATGCTCCGGGGAAAA 60.322 55.000 4.80 0.00 0.00 2.29
2718 2802 1.299648 CTGTCATGCTCCGGGGAAA 59.700 57.895 4.80 0.00 0.00 3.13
2719 2803 2.669133 CCTGTCATGCTCCGGGGAA 61.669 63.158 4.80 0.00 0.00 3.97
2720 2804 3.083349 CCTGTCATGCTCCGGGGA 61.083 66.667 4.80 0.00 0.00 4.81
2721 2805 2.196997 TTTCCTGTCATGCTCCGGGG 62.197 60.000 0.00 0.00 0.00 5.73
2722 2806 0.322456 TTTTCCTGTCATGCTCCGGG 60.322 55.000 0.00 0.00 0.00 5.73
2723 2807 1.089920 CTTTTCCTGTCATGCTCCGG 58.910 55.000 0.00 0.00 0.00 5.14
2724 2808 0.449388 GCTTTTCCTGTCATGCTCCG 59.551 55.000 0.00 0.00 0.00 4.63
2725 2809 1.538047 TGCTTTTCCTGTCATGCTCC 58.462 50.000 0.00 0.00 0.00 4.70
2726 2810 2.094854 CCTTGCTTTTCCTGTCATGCTC 60.095 50.000 0.00 0.00 0.00 4.26
2727 2811 1.891150 CCTTGCTTTTCCTGTCATGCT 59.109 47.619 0.00 0.00 0.00 3.79
2728 2812 1.615392 ACCTTGCTTTTCCTGTCATGC 59.385 47.619 0.00 0.00 0.00 4.06
2729 2813 2.029649 CCACCTTGCTTTTCCTGTCATG 60.030 50.000 0.00 0.00 0.00 3.07
2730 2814 2.242043 CCACCTTGCTTTTCCTGTCAT 58.758 47.619 0.00 0.00 0.00 3.06
2731 2815 1.691196 CCACCTTGCTTTTCCTGTCA 58.309 50.000 0.00 0.00 0.00 3.58
2732 2816 0.961753 CCCACCTTGCTTTTCCTGTC 59.038 55.000 0.00 0.00 0.00 3.51
2733 2817 0.555769 TCCCACCTTGCTTTTCCTGT 59.444 50.000 0.00 0.00 0.00 4.00
2734 2818 1.251251 CTCCCACCTTGCTTTTCCTG 58.749 55.000 0.00 0.00 0.00 3.86
2735 2819 0.540597 GCTCCCACCTTGCTTTTCCT 60.541 55.000 0.00 0.00 0.00 3.36
2736 2820 0.827507 TGCTCCCACCTTGCTTTTCC 60.828 55.000 0.00 0.00 0.00 3.13
2737 2821 0.600057 CTGCTCCCACCTTGCTTTTC 59.400 55.000 0.00 0.00 0.00 2.29
2738 2822 1.466851 GCTGCTCCCACCTTGCTTTT 61.467 55.000 0.00 0.00 0.00 2.27
2739 2823 1.905354 GCTGCTCCCACCTTGCTTT 60.905 57.895 0.00 0.00 0.00 3.51
2740 2824 1.492133 TAGCTGCTCCCACCTTGCTT 61.492 55.000 4.91 0.00 32.72 3.91
2741 2825 1.920325 TAGCTGCTCCCACCTTGCT 60.920 57.895 4.91 0.00 34.92 3.91
2742 2826 1.746991 GTAGCTGCTCCCACCTTGC 60.747 63.158 4.91 0.00 0.00 4.01
2743 2827 0.254178 ATGTAGCTGCTCCCACCTTG 59.746 55.000 4.91 0.00 0.00 3.61
2744 2828 0.543749 GATGTAGCTGCTCCCACCTT 59.456 55.000 4.91 0.00 0.00 3.50
2745 2829 1.680522 CGATGTAGCTGCTCCCACCT 61.681 60.000 4.91 0.00 0.00 4.00
2746 2830 1.227380 CGATGTAGCTGCTCCCACC 60.227 63.158 4.91 0.00 0.00 4.61
2747 2831 0.390860 ATCGATGTAGCTGCTCCCAC 59.609 55.000 4.91 0.00 0.00 4.61
2748 2832 0.390492 CATCGATGTAGCTGCTCCCA 59.610 55.000 17.50 4.76 0.00 4.37
2749 2833 0.390860 ACATCGATGTAGCTGCTCCC 59.609 55.000 29.05 0.00 39.68 4.30
2750 2834 1.339610 AGACATCGATGTAGCTGCTCC 59.660 52.381 30.04 15.22 41.95 4.70
2751 2835 2.791383 AGACATCGATGTAGCTGCTC 57.209 50.000 30.04 15.93 41.95 4.26
2752 2836 2.428530 TGAAGACATCGATGTAGCTGCT 59.571 45.455 30.04 19.27 41.95 4.24
2753 2837 2.814269 TGAAGACATCGATGTAGCTGC 58.186 47.619 30.04 21.76 41.95 5.25
2754 2838 3.241553 CGTTGAAGACATCGATGTAGCTG 59.758 47.826 30.04 12.89 41.95 4.24
2755 2839 3.128764 TCGTTGAAGACATCGATGTAGCT 59.871 43.478 30.04 20.69 41.95 3.32
2756 2840 3.435566 TCGTTGAAGACATCGATGTAGC 58.564 45.455 30.04 20.99 41.95 3.58
2757 2841 4.038361 CCTCGTTGAAGACATCGATGTAG 58.962 47.826 30.04 19.81 43.82 2.74
2758 2842 3.181490 CCCTCGTTGAAGACATCGATGTA 60.181 47.826 30.04 12.77 43.82 2.29
2759 2843 2.417379 CCCTCGTTGAAGACATCGATGT 60.417 50.000 30.37 30.37 43.82 3.06
2760 2844 2.159240 TCCCTCGTTGAAGACATCGATG 60.159 50.000 23.68 23.68 43.82 3.84
2761 2845 2.099921 CTCCCTCGTTGAAGACATCGAT 59.900 50.000 0.00 0.00 43.82 3.59
2762 2846 1.472878 CTCCCTCGTTGAAGACATCGA 59.527 52.381 0.00 0.00 43.05 3.59
2763 2847 1.914634 CTCCCTCGTTGAAGACATCG 58.085 55.000 0.00 0.00 39.59 3.84
2764 2848 1.646189 GCTCCCTCGTTGAAGACATC 58.354 55.000 0.00 0.00 0.00 3.06
2765 2849 0.108615 CGCTCCCTCGTTGAAGACAT 60.109 55.000 0.00 0.00 0.00 3.06
2766 2850 1.176619 TCGCTCCCTCGTTGAAGACA 61.177 55.000 0.00 0.00 0.00 3.41
2767 2851 0.733223 GTCGCTCCCTCGTTGAAGAC 60.733 60.000 0.00 0.00 0.00 3.01
2768 2852 1.585006 GTCGCTCCCTCGTTGAAGA 59.415 57.895 0.00 0.00 0.00 2.87
2769 2853 1.801913 CGTCGCTCCCTCGTTGAAG 60.802 63.158 0.00 0.00 0.00 3.02
2770 2854 2.257371 CGTCGCTCCCTCGTTGAA 59.743 61.111 0.00 0.00 0.00 2.69
2771 2855 4.415332 GCGTCGCTCCCTCGTTGA 62.415 66.667 10.68 0.00 0.00 3.18
2776 2860 3.708220 CTTCTGGCGTCGCTCCCTC 62.708 68.421 18.11 0.00 0.00 4.30
2777 2861 3.764466 CTTCTGGCGTCGCTCCCT 61.764 66.667 18.11 0.00 0.00 4.20
2778 2862 4.821589 CCTTCTGGCGTCGCTCCC 62.822 72.222 18.11 0.57 0.00 4.30
2798 2882 4.907034 CGGAGTCGTCGATGGCGG 62.907 72.222 3.09 0.00 38.28 6.13
2799 2883 4.907034 CCGGAGTCGTCGATGGCG 62.907 72.222 3.09 0.00 39.35 5.69
2800 2884 3.515286 TCCGGAGTCGTCGATGGC 61.515 66.667 0.00 0.00 33.95 4.40
2801 2885 2.404186 TGTCCGGAGTCGTCGATGG 61.404 63.158 3.06 0.00 33.95 3.51
2802 2886 1.226323 GTGTCCGGAGTCGTCGATG 60.226 63.158 3.06 0.00 33.95 3.84
2803 2887 1.645704 CTGTGTCCGGAGTCGTCGAT 61.646 60.000 3.06 0.00 33.95 3.59
2804 2888 2.281002 TGTGTCCGGAGTCGTCGA 60.281 61.111 3.06 0.00 33.95 4.20
2805 2889 2.176055 CTGTGTCCGGAGTCGTCG 59.824 66.667 3.06 0.00 33.95 5.12
2806 2890 2.126424 GCTGTGTCCGGAGTCGTC 60.126 66.667 3.06 0.00 33.95 4.20
2807 2891 3.681835 GGCTGTGTCCGGAGTCGT 61.682 66.667 3.06 0.00 33.95 4.34
2808 2892 4.778415 CGGCTGTGTCCGGAGTCG 62.778 72.222 3.06 1.68 45.38 4.18
2815 2899 2.181021 CGTACTCCGGCTGTGTCC 59.819 66.667 0.00 0.00 0.00 4.02
2816 2900 1.154073 GTCGTACTCCGGCTGTGTC 60.154 63.158 0.00 0.00 38.41 3.67
2817 2901 2.960170 GTCGTACTCCGGCTGTGT 59.040 61.111 0.00 0.00 38.41 3.72
2822 2906 2.157073 GCGAAAGTCGTACTCCGGC 61.157 63.158 0.00 0.00 42.81 6.13
2823 2907 1.515736 GGCGAAAGTCGTACTCCGG 60.516 63.158 0.00 0.00 42.81 5.14
2824 2908 4.068302 GGCGAAAGTCGTACTCCG 57.932 61.111 0.00 0.00 42.81 4.63
2832 2916 4.736896 AGACGGCCGGCGAAAGTC 62.737 66.667 31.76 25.36 0.00 3.01
2833 2917 4.736896 GAGACGGCCGGCGAAAGT 62.737 66.667 31.76 17.52 0.00 2.66
2834 2918 4.735132 TGAGACGGCCGGCGAAAG 62.735 66.667 31.76 14.17 0.00 2.62
2839 2923 4.509737 GTAGGTGAGACGGCCGGC 62.510 72.222 31.76 30.01 0.00 6.13
2840 2924 3.066190 TGTAGGTGAGACGGCCGG 61.066 66.667 31.76 11.88 0.00 6.13
2841 2925 2.181021 GTGTAGGTGAGACGGCCG 59.819 66.667 26.86 26.86 0.00 6.13
2842 2926 1.215647 CTGTGTAGGTGAGACGGCC 59.784 63.158 0.00 0.00 0.00 6.13
2843 2927 1.446272 GCTGTGTAGGTGAGACGGC 60.446 63.158 0.00 0.00 45.56 5.68
2844 2928 0.171455 GAGCTGTGTAGGTGAGACGG 59.829 60.000 0.00 0.00 34.13 4.79
2845 2929 0.179187 CGAGCTGTGTAGGTGAGACG 60.179 60.000 0.00 0.00 34.13 4.18
2846 2930 1.131504 CTCGAGCTGTGTAGGTGAGAC 59.868 57.143 0.00 0.00 34.45 3.36
2847 2931 1.454201 CTCGAGCTGTGTAGGTGAGA 58.546 55.000 0.00 0.00 34.45 3.27
2848 2932 0.179150 GCTCGAGCTGTGTAGGTGAG 60.179 60.000 29.88 0.00 38.21 3.51
2849 2933 1.595993 GGCTCGAGCTGTGTAGGTGA 61.596 60.000 34.46 0.00 41.70 4.02
2850 2934 1.153745 GGCTCGAGCTGTGTAGGTG 60.154 63.158 34.46 0.00 41.70 4.00
2851 2935 2.352032 GGGCTCGAGCTGTGTAGGT 61.352 63.158 34.46 0.00 41.70 3.08
2852 2936 2.290122 CTGGGCTCGAGCTGTGTAGG 62.290 65.000 34.46 15.01 41.70 3.18
2853 2937 1.140589 CTGGGCTCGAGCTGTGTAG 59.859 63.158 34.46 20.85 41.70 2.74
2854 2938 2.351244 CCTGGGCTCGAGCTGTGTA 61.351 63.158 34.46 16.26 41.70 2.90
2855 2939 3.699894 CCTGGGCTCGAGCTGTGT 61.700 66.667 34.46 0.00 41.70 3.72
2856 2940 2.641439 GATCCTGGGCTCGAGCTGTG 62.641 65.000 34.46 22.95 41.70 3.66
2857 2941 2.364842 ATCCTGGGCTCGAGCTGT 60.365 61.111 34.46 13.05 41.70 4.40
2858 2942 2.420890 GATCCTGGGCTCGAGCTG 59.579 66.667 34.46 23.60 41.70 4.24
2859 2943 2.841988 GGATCCTGGGCTCGAGCT 60.842 66.667 34.46 15.89 41.70 4.09
2860 2944 4.292178 CGGATCCTGGGCTCGAGC 62.292 72.222 29.38 29.38 41.14 5.03
2861 2945 1.872197 GATCGGATCCTGGGCTCGAG 61.872 65.000 8.45 8.45 33.32 4.04
2862 2946 1.903890 GATCGGATCCTGGGCTCGA 60.904 63.158 10.75 0.00 0.00 4.04
2863 2947 2.152297 CTGATCGGATCCTGGGCTCG 62.152 65.000 15.06 0.00 0.00 5.03
2864 2948 1.670590 CTGATCGGATCCTGGGCTC 59.329 63.158 15.06 0.00 0.00 4.70
2865 2949 2.515071 GCTGATCGGATCCTGGGCT 61.515 63.158 15.06 0.00 0.00 5.19
2866 2950 2.031768 GCTGATCGGATCCTGGGC 59.968 66.667 15.06 10.16 0.00 5.36
2867 2951 0.542938 TAGGCTGATCGGATCCTGGG 60.543 60.000 15.06 4.67 0.00 4.45
2868 2952 0.605589 GTAGGCTGATCGGATCCTGG 59.394 60.000 15.06 6.88 0.00 4.45
2869 2953 1.000283 GTGTAGGCTGATCGGATCCTG 60.000 57.143 15.06 9.17 0.00 3.86
2870 2954 1.333177 GTGTAGGCTGATCGGATCCT 58.667 55.000 15.06 5.82 0.00 3.24
2871 2955 1.040646 TGTGTAGGCTGATCGGATCC 58.959 55.000 15.06 0.00 0.00 3.36
2872 2956 1.269831 GGTGTGTAGGCTGATCGGATC 60.270 57.143 11.07 11.07 0.00 3.36
2873 2957 0.753262 GGTGTGTAGGCTGATCGGAT 59.247 55.000 5.48 0.00 0.00 4.18
2874 2958 0.613572 TGGTGTGTAGGCTGATCGGA 60.614 55.000 5.48 0.00 0.00 4.55
2875 2959 0.249120 TTGGTGTGTAGGCTGATCGG 59.751 55.000 0.00 0.00 0.00 4.18
2876 2960 1.732259 GTTTGGTGTGTAGGCTGATCG 59.268 52.381 0.00 0.00 0.00 3.69
2877 2961 3.059352 AGTTTGGTGTGTAGGCTGATC 57.941 47.619 0.00 0.00 0.00 2.92
2878 2962 3.583086 AGTAGTTTGGTGTGTAGGCTGAT 59.417 43.478 0.00 0.00 0.00 2.90
2879 2963 2.969950 AGTAGTTTGGTGTGTAGGCTGA 59.030 45.455 0.00 0.00 0.00 4.26
2880 2964 3.402628 AGTAGTTTGGTGTGTAGGCTG 57.597 47.619 0.00 0.00 0.00 4.85
2881 2965 3.260128 GGTAGTAGTTTGGTGTGTAGGCT 59.740 47.826 0.00 0.00 0.00 4.58
2882 2966 3.593096 GGTAGTAGTTTGGTGTGTAGGC 58.407 50.000 0.00 0.00 0.00 3.93
2883 2967 3.055602 GGGGTAGTAGTTTGGTGTGTAGG 60.056 52.174 0.00 0.00 0.00 3.18
2884 2968 3.836562 AGGGGTAGTAGTTTGGTGTGTAG 59.163 47.826 0.00 0.00 0.00 2.74
2885 2969 3.579586 CAGGGGTAGTAGTTTGGTGTGTA 59.420 47.826 0.00 0.00 0.00 2.90
2886 2970 2.370849 CAGGGGTAGTAGTTTGGTGTGT 59.629 50.000 0.00 0.00 0.00 3.72
2887 2971 2.874457 GCAGGGGTAGTAGTTTGGTGTG 60.874 54.545 0.00 0.00 0.00 3.82
2888 2972 1.350019 GCAGGGGTAGTAGTTTGGTGT 59.650 52.381 0.00 0.00 0.00 4.16
2889 2973 1.339727 GGCAGGGGTAGTAGTTTGGTG 60.340 57.143 0.00 0.00 0.00 4.17
2890 2974 0.989602 GGCAGGGGTAGTAGTTTGGT 59.010 55.000 0.00 0.00 0.00 3.67
2891 2975 1.209747 GAGGCAGGGGTAGTAGTTTGG 59.790 57.143 0.00 0.00 0.00 3.28
2892 2976 1.209747 GGAGGCAGGGGTAGTAGTTTG 59.790 57.143 0.00 0.00 0.00 2.93
2893 2977 1.203389 TGGAGGCAGGGGTAGTAGTTT 60.203 52.381 0.00 0.00 0.00 2.66
2894 2978 0.416231 TGGAGGCAGGGGTAGTAGTT 59.584 55.000 0.00 0.00 0.00 2.24
2895 2979 0.325390 GTGGAGGCAGGGGTAGTAGT 60.325 60.000 0.00 0.00 0.00 2.73
2896 2980 1.392710 CGTGGAGGCAGGGGTAGTAG 61.393 65.000 0.00 0.00 0.00 2.57
2897 2981 1.380785 CGTGGAGGCAGGGGTAGTA 60.381 63.158 0.00 0.00 0.00 1.82
2898 2982 2.683933 CGTGGAGGCAGGGGTAGT 60.684 66.667 0.00 0.00 0.00 2.73
2899 2983 3.470888 CCGTGGAGGCAGGGGTAG 61.471 72.222 0.00 0.00 0.00 3.18
2924 3008 4.431131 ATGCTTGCCGGGGAGGTG 62.431 66.667 2.18 0.00 43.70 4.00
2925 3009 4.431131 CATGCTTGCCGGGGAGGT 62.431 66.667 2.18 0.00 43.70 3.85
2926 3010 4.113815 TCATGCTTGCCGGGGAGG 62.114 66.667 2.18 0.00 44.97 4.30
2927 3011 2.825836 GTCATGCTTGCCGGGGAG 60.826 66.667 2.18 0.00 0.00 4.30
2928 3012 2.905996 AAGTCATGCTTGCCGGGGA 61.906 57.895 2.18 0.00 35.80 4.81
2929 3013 2.361610 AAGTCATGCTTGCCGGGG 60.362 61.111 2.18 0.00 35.80 5.73
2930 3014 2.879907 CAAGTCATGCTTGCCGGG 59.120 61.111 2.18 0.00 46.68 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.