Multiple sequence alignment - TraesCS3D01G281400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G281400 chr3D 100.000 3385 0 0 1 3385 389210717 389214101 0.000000e+00 6252
1 TraesCS3D01G281400 chr3D 85.612 278 35 4 1 277 604300204 604300477 1.540000e-73 287
2 TraesCS3D01G281400 chr3B 90.088 2048 112 40 683 2678 506964362 506966370 0.000000e+00 2573
3 TraesCS3D01G281400 chr3B 89.917 724 50 12 2672 3385 506968578 506969288 0.000000e+00 911
4 TraesCS3D01G281400 chr3B 86.977 645 58 10 683 1313 506919419 506920051 0.000000e+00 702
5 TraesCS3D01G281400 chr3B 84.307 274 36 7 1 273 654645284 654645551 9.320000e-66 261
6 TraesCS3D01G281400 chr3A 93.200 1706 69 23 1676 3350 510181326 510183015 0.000000e+00 2464
7 TraesCS3D01G281400 chr3A 93.548 837 34 9 849 1669 510180381 510181213 0.000000e+00 1229
8 TraesCS3D01G281400 chr7B 90.459 283 26 1 1 283 709917836 709917555 4.130000e-99 372
9 TraesCS3D01G281400 chr7B 85.252 278 38 3 1 277 642777482 642777757 1.990000e-72 283
10 TraesCS3D01G281400 chr7B 86.220 254 30 4 33 284 642777757 642778007 1.550000e-68 270
11 TraesCS3D01G281400 chr7B 87.500 168 19 2 3177 3343 332339998 332340164 3.450000e-45 193
12 TraesCS3D01G281400 chr5D 85.971 278 35 4 1 277 339531559 339531833 9.190000e-76 294
13 TraesCS3D01G281400 chr5D 82.759 261 38 6 411 665 554510490 554510231 3.400000e-55 226
14 TraesCS3D01G281400 chr5D 82.308 260 39 4 411 664 339984277 339984019 5.690000e-53 219
15 TraesCS3D01G281400 chr5D 81.413 269 44 4 411 675 68218455 68218721 7.360000e-52 215
16 TraesCS3D01G281400 chr2B 85.714 273 36 3 1 272 415141887 415142157 5.530000e-73 285
17 TraesCS3D01G281400 chr7D 84.946 279 40 2 1 278 26561668 26561391 7.150000e-72 281
18 TraesCS3D01G281400 chr7D 84.231 260 34 4 412 665 53492770 53492512 2.610000e-61 246
19 TraesCS3D01G281400 chr7D 82.375 261 39 4 411 665 530758551 530758292 1.580000e-53 220
20 TraesCS3D01G281400 chr7D 80.916 262 42 5 411 665 465264760 465265020 2.060000e-47 200
21 TraesCS3D01G281400 chr6B 83.755 277 42 3 1 276 132409175 132409449 3.350000e-65 259
22 TraesCS3D01G281400 chr6D 81.319 273 40 7 411 675 438936541 438936272 9.520000e-51 211
23 TraesCS3D01G281400 chr6D 89.571 163 16 1 3181 3343 431160828 431160667 4.430000e-49 206
24 TraesCS3D01G281400 chr6D 80.970 268 39 7 408 665 98020536 98020801 5.730000e-48 202
25 TraesCS3D01G281400 chr1D 81.181 271 44 4 411 675 414928270 414928001 9.520000e-51 211
26 TraesCS3D01G281400 chrUn 90.123 162 15 1 3181 3342 81477639 81477799 3.420000e-50 209
27 TraesCS3D01G281400 chr1B 89.222 167 16 1 3177 3343 67537606 67537442 1.230000e-49 207
28 TraesCS3D01G281400 chr2D 88.554 166 17 2 3178 3342 387193692 387193856 2.060000e-47 200
29 TraesCS3D01G281400 chr1A 88.344 163 19 0 3180 3342 39438837 39438999 2.660000e-46 196
30 TraesCS3D01G281400 chr4A 88.272 162 19 0 3181 3342 37058829 37058668 9.580000e-46 195
31 TraesCS3D01G281400 chr5A 87.500 168 20 1 3175 3342 414776179 414776013 3.450000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G281400 chr3D 389210717 389214101 3384 False 6252.0 6252 100.0000 1 3385 1 chr3D.!!$F1 3384
1 TraesCS3D01G281400 chr3B 506964362 506969288 4926 False 1742.0 2573 90.0025 683 3385 2 chr3B.!!$F3 2702
2 TraesCS3D01G281400 chr3B 506919419 506920051 632 False 702.0 702 86.9770 683 1313 1 chr3B.!!$F1 630
3 TraesCS3D01G281400 chr3A 510180381 510183015 2634 False 1846.5 2464 93.3740 849 3350 2 chr3A.!!$F1 2501
4 TraesCS3D01G281400 chr7B 642777482 642778007 525 False 276.5 283 85.7360 1 284 2 chr7B.!!$F2 283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 916 0.100146 GTTACTCCCACCGCGAGTAG 59.900 60.0 8.23 0.95 42.30 2.57 F
805 1048 0.107897 TGGTGCTTGTACGGGCATAG 60.108 55.0 14.08 0.00 40.66 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2357 1.815003 CAAAGGGAAGCCACTCACATC 59.185 52.381 0.00 0.00 0.00 3.06 R
2391 2781 3.006247 AGTAAGCAAGCTAGCAAGAAGC 58.994 45.455 18.83 12.56 46.19 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 111 3.115554 GTTCATCAAATTATGCCCGTGC 58.884 45.455 0.00 0.00 38.26 5.34
27 113 3.814625 TCATCAAATTATGCCCGTGCTA 58.185 40.909 0.00 0.00 38.71 3.49
41 127 6.300703 TGCCCGTGCTATACCTTATATTTTT 58.699 36.000 0.00 0.00 38.71 1.94
42 128 6.428771 TGCCCGTGCTATACCTTATATTTTTC 59.571 38.462 0.00 0.00 38.71 2.29
62 305 6.500684 TTTCATCAGAAGTGATTTACCTGC 57.499 37.500 0.00 0.00 40.84 4.85
63 306 5.164620 TCATCAGAAGTGATTTACCTGCA 57.835 39.130 0.00 0.00 40.84 4.41
70 313 7.041721 CAGAAGTGATTTACCTGCACATAGTA 58.958 38.462 0.00 0.00 35.08 1.82
73 316 5.760253 AGTGATTTACCTGCACATAGTATGC 59.240 40.000 10.16 0.00 43.68 3.14
91 334 9.825972 ATAGTATGCGATTGTGTAAATAAATGC 57.174 29.630 0.00 0.00 0.00 3.56
98 341 7.431960 GCGATTGTGTAAATAAATGCTCATCAA 59.568 33.333 0.00 0.00 0.00 2.57
99 342 9.288124 CGATTGTGTAAATAAATGCTCATCAAA 57.712 29.630 0.00 0.00 0.00 2.69
108 351 8.537728 AATAAATGCTCATCAAATTCTACCCA 57.462 30.769 0.00 0.00 0.00 4.51
109 352 8.716674 ATAAATGCTCATCAAATTCTACCCAT 57.283 30.769 0.00 0.00 0.00 4.00
110 353 6.401047 AATGCTCATCAAATTCTACCCATG 57.599 37.500 0.00 0.00 0.00 3.66
111 354 5.114764 TGCTCATCAAATTCTACCCATGA 57.885 39.130 0.00 0.00 0.00 3.07
112 355 5.698104 TGCTCATCAAATTCTACCCATGAT 58.302 37.500 0.00 0.00 0.00 2.45
113 356 6.131264 TGCTCATCAAATTCTACCCATGATT 58.869 36.000 0.00 0.00 0.00 2.57
114 357 6.608405 TGCTCATCAAATTCTACCCATGATTT 59.392 34.615 0.00 0.00 0.00 2.17
115 358 7.779326 TGCTCATCAAATTCTACCCATGATTTA 59.221 33.333 0.00 0.00 0.00 1.40
116 359 8.800332 GCTCATCAAATTCTACCCATGATTTAT 58.200 33.333 0.00 0.00 0.00 1.40
177 420 9.588096 AAAATAGAATTGGTTCAGAAGGTAAGT 57.412 29.630 0.00 0.00 36.79 2.24
178 421 9.588096 AAATAGAATTGGTTCAGAAGGTAAGTT 57.412 29.630 0.00 0.00 36.79 2.66
182 425 9.588096 AGAATTGGTTCAGAAGGTAAGTTAATT 57.412 29.630 0.00 0.00 36.79 1.40
205 448 7.490962 TTAAGATGATTGCTTATTGTACGGG 57.509 36.000 0.00 0.00 0.00 5.28
206 449 5.290493 AGATGATTGCTTATTGTACGGGA 57.710 39.130 0.00 0.00 0.00 5.14
207 450 5.680619 AGATGATTGCTTATTGTACGGGAA 58.319 37.500 0.00 0.00 0.00 3.97
208 451 6.119536 AGATGATTGCTTATTGTACGGGAAA 58.880 36.000 0.00 0.00 0.00 3.13
209 452 5.811399 TGATTGCTTATTGTACGGGAAAG 57.189 39.130 0.00 0.00 0.00 2.62
210 453 4.638421 TGATTGCTTATTGTACGGGAAAGG 59.362 41.667 0.00 0.00 0.00 3.11
211 454 3.706600 TGCTTATTGTACGGGAAAGGT 57.293 42.857 0.00 0.00 0.00 3.50
212 455 4.023726 TGCTTATTGTACGGGAAAGGTT 57.976 40.909 0.00 0.00 0.00 3.50
213 456 3.754323 TGCTTATTGTACGGGAAAGGTTG 59.246 43.478 0.00 0.00 0.00 3.77
214 457 4.004982 GCTTATTGTACGGGAAAGGTTGA 58.995 43.478 0.00 0.00 0.00 3.18
215 458 4.456566 GCTTATTGTACGGGAAAGGTTGAA 59.543 41.667 0.00 0.00 0.00 2.69
216 459 5.618418 GCTTATTGTACGGGAAAGGTTGAAC 60.618 44.000 0.00 0.00 0.00 3.18
217 460 1.868469 TGTACGGGAAAGGTTGAACG 58.132 50.000 0.00 0.00 0.00 3.95
218 461 1.411977 TGTACGGGAAAGGTTGAACGA 59.588 47.619 0.00 0.00 0.00 3.85
219 462 2.158986 TGTACGGGAAAGGTTGAACGAA 60.159 45.455 0.00 0.00 0.00 3.85
220 463 1.589803 ACGGGAAAGGTTGAACGAAG 58.410 50.000 0.00 0.00 0.00 3.79
221 464 0.872388 CGGGAAAGGTTGAACGAAGG 59.128 55.000 0.00 0.00 0.00 3.46
222 465 0.596577 GGGAAAGGTTGAACGAAGGC 59.403 55.000 0.00 0.00 0.00 4.35
223 466 0.237498 GGAAAGGTTGAACGAAGGCG 59.763 55.000 0.00 0.00 44.79 5.52
233 476 4.496670 CGAAGGCGTGGTAGGAAG 57.503 61.111 0.00 0.00 0.00 3.46
234 477 1.888018 CGAAGGCGTGGTAGGAAGA 59.112 57.895 0.00 0.00 0.00 2.87
235 478 0.245539 CGAAGGCGTGGTAGGAAGAA 59.754 55.000 0.00 0.00 0.00 2.52
236 479 1.337447 CGAAGGCGTGGTAGGAAGAAA 60.337 52.381 0.00 0.00 0.00 2.52
237 480 2.347731 GAAGGCGTGGTAGGAAGAAAG 58.652 52.381 0.00 0.00 0.00 2.62
238 481 1.640917 AGGCGTGGTAGGAAGAAAGA 58.359 50.000 0.00 0.00 0.00 2.52
239 482 2.188817 AGGCGTGGTAGGAAGAAAGAT 58.811 47.619 0.00 0.00 0.00 2.40
240 483 2.093447 AGGCGTGGTAGGAAGAAAGATG 60.093 50.000 0.00 0.00 0.00 2.90
241 484 2.093658 GGCGTGGTAGGAAGAAAGATGA 60.094 50.000 0.00 0.00 0.00 2.92
242 485 3.596214 GCGTGGTAGGAAGAAAGATGAA 58.404 45.455 0.00 0.00 0.00 2.57
243 486 4.000988 GCGTGGTAGGAAGAAAGATGAAA 58.999 43.478 0.00 0.00 0.00 2.69
244 487 4.093556 GCGTGGTAGGAAGAAAGATGAAAG 59.906 45.833 0.00 0.00 0.00 2.62
245 488 4.631813 CGTGGTAGGAAGAAAGATGAAAGG 59.368 45.833 0.00 0.00 0.00 3.11
246 489 5.568825 CGTGGTAGGAAGAAAGATGAAAGGA 60.569 44.000 0.00 0.00 0.00 3.36
247 490 5.877564 GTGGTAGGAAGAAAGATGAAAGGAG 59.122 44.000 0.00 0.00 0.00 3.69
248 491 5.785423 TGGTAGGAAGAAAGATGAAAGGAGA 59.215 40.000 0.00 0.00 0.00 3.71
249 492 6.110033 GGTAGGAAGAAAGATGAAAGGAGAC 58.890 44.000 0.00 0.00 0.00 3.36
250 493 5.172687 AGGAAGAAAGATGAAAGGAGACC 57.827 43.478 0.00 0.00 0.00 3.85
251 494 4.849235 AGGAAGAAAGATGAAAGGAGACCT 59.151 41.667 0.00 0.00 33.87 3.85
253 496 6.502158 AGGAAGAAAGATGAAAGGAGACCTTA 59.498 38.462 3.40 0.00 43.92 2.69
254 497 6.596106 GGAAGAAAGATGAAAGGAGACCTTAC 59.404 42.308 3.40 0.00 43.92 2.34
255 498 5.725362 AGAAAGATGAAAGGAGACCTTACG 58.275 41.667 3.40 0.00 43.92 3.18
256 499 5.246429 AGAAAGATGAAAGGAGACCTTACGT 59.754 40.000 3.40 0.00 43.92 3.57
257 500 5.485209 AAGATGAAAGGAGACCTTACGTT 57.515 39.130 0.00 0.00 43.92 3.99
258 501 5.074584 AGATGAAAGGAGACCTTACGTTC 57.925 43.478 0.00 0.00 43.92 3.95
259 502 4.527038 AGATGAAAGGAGACCTTACGTTCA 59.473 41.667 0.00 4.62 43.92 3.18
260 503 4.884668 TGAAAGGAGACCTTACGTTCAT 57.115 40.909 0.00 0.00 43.92 2.57
261 504 5.223449 TGAAAGGAGACCTTACGTTCATT 57.777 39.130 0.00 0.00 43.92 2.57
262 505 5.617252 TGAAAGGAGACCTTACGTTCATTT 58.383 37.500 0.00 0.00 43.92 2.32
263 506 6.059484 TGAAAGGAGACCTTACGTTCATTTT 58.941 36.000 0.00 0.00 43.92 1.82
264 507 7.218614 TGAAAGGAGACCTTACGTTCATTTTA 58.781 34.615 0.00 0.00 43.92 1.52
265 508 7.716123 TGAAAGGAGACCTTACGTTCATTTTAA 59.284 33.333 0.00 0.00 43.92 1.52
266 509 7.668525 AAGGAGACCTTACGTTCATTTTAAG 57.331 36.000 0.00 0.00 42.74 1.85
267 510 6.766429 AGGAGACCTTACGTTCATTTTAAGT 58.234 36.000 0.00 0.00 0.00 2.24
268 511 7.899973 AGGAGACCTTACGTTCATTTTAAGTA 58.100 34.615 0.00 0.00 0.00 2.24
269 512 8.033626 AGGAGACCTTACGTTCATTTTAAGTAG 58.966 37.037 0.00 0.00 0.00 2.57
270 513 7.816513 GGAGACCTTACGTTCATTTTAAGTAGT 59.183 37.037 0.00 0.00 0.00 2.73
271 514 9.846248 GAGACCTTACGTTCATTTTAAGTAGTA 57.154 33.333 0.00 0.00 0.00 1.82
272 515 9.852091 AGACCTTACGTTCATTTTAAGTAGTAG 57.148 33.333 0.00 0.00 0.00 2.57
273 516 9.846248 GACCTTACGTTCATTTTAAGTAGTAGA 57.154 33.333 0.00 0.00 0.00 2.59
274 517 9.852091 ACCTTACGTTCATTTTAAGTAGTAGAG 57.148 33.333 0.00 0.00 0.00 2.43
319 562 9.120538 ACTTAAAAGAAAAACTCTATGTGCTGA 57.879 29.630 0.00 0.00 32.46 4.26
321 564 9.897744 TTAAAAGAAAAACTCTATGTGCTGATG 57.102 29.630 0.00 0.00 32.46 3.07
322 565 7.516198 AAAGAAAAACTCTATGTGCTGATGT 57.484 32.000 0.00 0.00 32.46 3.06
323 566 6.492007 AGAAAAACTCTATGTGCTGATGTG 57.508 37.500 0.00 0.00 30.22 3.21
324 567 5.413833 AGAAAAACTCTATGTGCTGATGTGG 59.586 40.000 0.00 0.00 30.22 4.17
325 568 2.322355 ACTCTATGTGCTGATGTGGC 57.678 50.000 0.00 0.00 0.00 5.01
326 569 1.836166 ACTCTATGTGCTGATGTGGCT 59.164 47.619 0.00 0.00 0.00 4.75
327 570 2.210961 CTCTATGTGCTGATGTGGCTG 58.789 52.381 0.00 0.00 0.00 4.85
328 571 1.134310 TCTATGTGCTGATGTGGCTGG 60.134 52.381 0.00 0.00 0.00 4.85
329 572 0.749091 TATGTGCTGATGTGGCTGGC 60.749 55.000 0.00 0.00 0.00 4.85
330 573 2.360852 GTGCTGATGTGGCTGGCT 60.361 61.111 2.00 0.00 0.00 4.75
331 574 2.360726 TGCTGATGTGGCTGGCTG 60.361 61.111 2.00 0.00 0.00 4.85
332 575 3.138798 GCTGATGTGGCTGGCTGG 61.139 66.667 2.00 0.00 0.00 4.85
333 576 2.672908 CTGATGTGGCTGGCTGGA 59.327 61.111 2.00 0.00 0.00 3.86
334 577 1.451567 CTGATGTGGCTGGCTGGAG 60.452 63.158 2.00 0.00 0.00 3.86
335 578 2.124403 GATGTGGCTGGCTGGAGG 60.124 66.667 2.00 0.00 0.00 4.30
336 579 4.437587 ATGTGGCTGGCTGGAGGC 62.438 66.667 2.00 0.00 38.99 4.70
353 596 2.767536 GCGCTGCCAGAATAGTTCA 58.232 52.632 0.00 0.00 0.00 3.18
354 597 1.303309 GCGCTGCCAGAATAGTTCAT 58.697 50.000 0.00 0.00 0.00 2.57
355 598 1.003116 GCGCTGCCAGAATAGTTCATG 60.003 52.381 0.00 0.00 0.00 3.07
356 599 1.003116 CGCTGCCAGAATAGTTCATGC 60.003 52.381 0.00 0.00 0.00 4.06
357 600 1.336125 GCTGCCAGAATAGTTCATGCC 59.664 52.381 0.00 0.00 0.00 4.40
358 601 1.952296 CTGCCAGAATAGTTCATGCCC 59.048 52.381 0.00 0.00 0.00 5.36
359 602 1.565759 TGCCAGAATAGTTCATGCCCT 59.434 47.619 0.00 0.00 0.00 5.19
360 603 2.025037 TGCCAGAATAGTTCATGCCCTT 60.025 45.455 0.00 0.00 0.00 3.95
361 604 3.201930 TGCCAGAATAGTTCATGCCCTTA 59.798 43.478 0.00 0.00 0.00 2.69
362 605 4.141181 TGCCAGAATAGTTCATGCCCTTAT 60.141 41.667 0.00 0.00 0.00 1.73
363 606 5.073008 TGCCAGAATAGTTCATGCCCTTATA 59.927 40.000 0.00 0.00 0.00 0.98
364 607 6.183347 GCCAGAATAGTTCATGCCCTTATAT 58.817 40.000 0.00 0.00 0.00 0.86
365 608 6.094603 GCCAGAATAGTTCATGCCCTTATATG 59.905 42.308 0.00 0.00 0.00 1.78
366 609 6.094603 CCAGAATAGTTCATGCCCTTATATGC 59.905 42.308 0.00 0.00 0.00 3.14
367 610 5.877012 AGAATAGTTCATGCCCTTATATGCG 59.123 40.000 0.00 0.00 0.00 4.73
368 611 3.492102 AGTTCATGCCCTTATATGCGT 57.508 42.857 0.00 0.00 0.00 5.24
369 612 3.141398 AGTTCATGCCCTTATATGCGTG 58.859 45.455 0.00 0.00 44.07 5.34
370 613 2.183478 TCATGCCCTTATATGCGTGG 57.817 50.000 10.13 0.00 43.16 4.94
371 614 1.696884 TCATGCCCTTATATGCGTGGA 59.303 47.619 10.13 0.00 43.16 4.02
372 615 2.305635 TCATGCCCTTATATGCGTGGAT 59.694 45.455 10.13 0.00 43.16 3.41
373 616 2.183478 TGCCCTTATATGCGTGGATG 57.817 50.000 0.00 0.00 0.00 3.51
374 617 1.271325 TGCCCTTATATGCGTGGATGG 60.271 52.381 0.00 0.00 0.00 3.51
375 618 1.453155 CCCTTATATGCGTGGATGGC 58.547 55.000 0.00 0.00 0.00 4.40
376 619 1.003580 CCCTTATATGCGTGGATGGCT 59.996 52.381 0.00 0.00 0.00 4.75
377 620 2.079158 CCTTATATGCGTGGATGGCTG 58.921 52.381 0.00 0.00 0.00 4.85
378 621 2.079158 CTTATATGCGTGGATGGCTGG 58.921 52.381 0.00 0.00 0.00 4.85
379 622 1.347062 TATATGCGTGGATGGCTGGA 58.653 50.000 0.00 0.00 0.00 3.86
380 623 0.694771 ATATGCGTGGATGGCTGGAT 59.305 50.000 0.00 0.00 0.00 3.41
381 624 0.250424 TATGCGTGGATGGCTGGATG 60.250 55.000 0.00 0.00 0.00 3.51
382 625 3.589881 GCGTGGATGGCTGGATGC 61.590 66.667 0.00 0.00 41.94 3.91
391 634 2.599597 GCTGGATGCCTGGATGGT 59.400 61.111 0.00 0.00 38.35 3.55
392 635 1.076485 GCTGGATGCCTGGATGGTT 60.076 57.895 0.00 0.00 38.35 3.67
393 636 1.105759 GCTGGATGCCTGGATGGTTC 61.106 60.000 0.00 0.00 38.35 3.62
394 637 0.256752 CTGGATGCCTGGATGGTTCA 59.743 55.000 0.00 0.00 38.35 3.18
395 638 0.928505 TGGATGCCTGGATGGTTCAT 59.071 50.000 0.00 0.00 38.35 2.57
396 639 1.325355 GGATGCCTGGATGGTTCATG 58.675 55.000 0.00 0.00 38.35 3.07
397 640 1.133699 GGATGCCTGGATGGTTCATGA 60.134 52.381 0.00 0.00 38.35 3.07
398 641 1.952296 GATGCCTGGATGGTTCATGAC 59.048 52.381 0.00 0.00 38.35 3.06
399 642 0.994247 TGCCTGGATGGTTCATGACT 59.006 50.000 0.00 0.00 38.35 3.41
400 643 1.355381 TGCCTGGATGGTTCATGACTT 59.645 47.619 0.00 0.00 38.35 3.01
401 644 1.747355 GCCTGGATGGTTCATGACTTG 59.253 52.381 0.00 0.00 38.35 3.16
402 645 2.881403 GCCTGGATGGTTCATGACTTGT 60.881 50.000 0.00 0.00 38.35 3.16
403 646 2.751259 CCTGGATGGTTCATGACTTGTG 59.249 50.000 0.00 0.00 0.00 3.33
404 647 2.161855 TGGATGGTTCATGACTTGTGC 58.838 47.619 0.00 0.00 0.00 4.57
405 648 1.474077 GGATGGTTCATGACTTGTGCC 59.526 52.381 0.00 0.00 0.00 5.01
406 649 1.131126 GATGGTTCATGACTTGTGCCG 59.869 52.381 0.00 0.00 0.00 5.69
407 650 0.107643 TGGTTCATGACTTGTGCCGA 59.892 50.000 0.00 0.00 0.00 5.54
408 651 1.271325 TGGTTCATGACTTGTGCCGAT 60.271 47.619 0.00 0.00 0.00 4.18
409 652 1.398390 GGTTCATGACTTGTGCCGATC 59.602 52.381 0.00 0.00 0.00 3.69
410 653 2.076100 GTTCATGACTTGTGCCGATCA 58.924 47.619 0.00 0.00 0.00 2.92
411 654 2.014335 TCATGACTTGTGCCGATCAG 57.986 50.000 0.00 0.00 0.00 2.90
412 655 1.550072 TCATGACTTGTGCCGATCAGA 59.450 47.619 0.00 0.00 0.00 3.27
413 656 1.662629 CATGACTTGTGCCGATCAGAC 59.337 52.381 0.00 0.00 0.00 3.51
414 657 0.969149 TGACTTGTGCCGATCAGACT 59.031 50.000 0.00 0.00 0.00 3.24
415 658 2.167662 TGACTTGTGCCGATCAGACTA 58.832 47.619 0.00 0.00 0.00 2.59
416 659 2.164422 TGACTTGTGCCGATCAGACTAG 59.836 50.000 0.00 0.00 0.00 2.57
417 660 2.164624 GACTTGTGCCGATCAGACTAGT 59.835 50.000 0.00 0.00 0.00 2.57
418 661 2.164624 ACTTGTGCCGATCAGACTAGTC 59.835 50.000 15.41 15.41 0.00 2.59
419 662 1.834188 TGTGCCGATCAGACTAGTCA 58.166 50.000 24.44 5.48 0.00 3.41
420 663 1.472878 TGTGCCGATCAGACTAGTCAC 59.527 52.381 24.44 12.12 0.00 3.67
421 664 1.472878 GTGCCGATCAGACTAGTCACA 59.527 52.381 24.44 10.70 0.00 3.58
422 665 1.745653 TGCCGATCAGACTAGTCACAG 59.254 52.381 24.44 13.59 0.00 3.66
423 666 1.746220 GCCGATCAGACTAGTCACAGT 59.254 52.381 24.44 7.63 0.00 3.55
424 667 2.478709 GCCGATCAGACTAGTCACAGTG 60.479 54.545 24.44 13.74 0.00 3.66
425 668 2.098280 CCGATCAGACTAGTCACAGTGG 59.902 54.545 24.44 15.61 0.00 4.00
426 669 2.098280 CGATCAGACTAGTCACAGTGGG 59.902 54.545 24.44 4.12 0.00 4.61
427 670 1.924731 TCAGACTAGTCACAGTGGGG 58.075 55.000 24.44 4.04 0.00 4.96
428 671 1.427753 TCAGACTAGTCACAGTGGGGA 59.572 52.381 24.44 6.13 0.00 4.81
429 672 1.821753 CAGACTAGTCACAGTGGGGAG 59.178 57.143 24.44 0.00 0.00 4.30
430 673 1.429687 AGACTAGTCACAGTGGGGAGT 59.570 52.381 24.44 1.39 0.00 3.85
431 674 2.648304 AGACTAGTCACAGTGGGGAGTA 59.352 50.000 24.44 0.00 0.00 2.59
432 675 3.075582 AGACTAGTCACAGTGGGGAGTAA 59.924 47.826 24.44 0.00 0.00 2.24
433 676 3.163467 ACTAGTCACAGTGGGGAGTAAC 58.837 50.000 0.00 0.00 0.00 2.50
434 677 2.400467 AGTCACAGTGGGGAGTAACT 57.600 50.000 0.00 0.00 0.00 2.24
435 678 2.690840 AGTCACAGTGGGGAGTAACTT 58.309 47.619 0.00 0.00 0.00 2.66
436 679 2.368875 AGTCACAGTGGGGAGTAACTTG 59.631 50.000 0.00 0.00 0.00 3.16
437 680 1.697432 TCACAGTGGGGAGTAACTTGG 59.303 52.381 0.00 0.00 0.00 3.61
438 681 1.697432 CACAGTGGGGAGTAACTTGGA 59.303 52.381 0.00 0.00 0.00 3.53
439 682 1.978580 ACAGTGGGGAGTAACTTGGAG 59.021 52.381 0.00 0.00 0.00 3.86
440 683 1.978580 CAGTGGGGAGTAACTTGGAGT 59.021 52.381 0.00 0.00 0.00 3.85
441 684 3.170717 CAGTGGGGAGTAACTTGGAGTA 58.829 50.000 0.00 0.00 0.00 2.59
442 685 3.195825 CAGTGGGGAGTAACTTGGAGTAG 59.804 52.174 0.00 0.00 0.00 2.57
443 686 3.171528 GTGGGGAGTAACTTGGAGTAGT 58.828 50.000 0.00 0.00 0.00 2.73
444 687 4.045079 AGTGGGGAGTAACTTGGAGTAGTA 59.955 45.833 0.00 0.00 0.00 1.82
445 688 4.774200 GTGGGGAGTAACTTGGAGTAGTAA 59.226 45.833 0.00 0.00 0.00 2.24
446 689 4.774200 TGGGGAGTAACTTGGAGTAGTAAC 59.226 45.833 0.00 0.00 0.00 2.50
447 690 4.774200 GGGGAGTAACTTGGAGTAGTAACA 59.226 45.833 0.00 0.00 0.00 2.41
448 691 5.424573 GGGGAGTAACTTGGAGTAGTAACAT 59.575 44.000 0.00 0.00 0.00 2.71
449 692 6.338937 GGGAGTAACTTGGAGTAGTAACATG 58.661 44.000 0.00 0.00 0.00 3.21
450 693 5.811100 GGAGTAACTTGGAGTAGTAACATGC 59.189 44.000 0.00 0.00 0.00 4.06
451 694 6.354794 AGTAACTTGGAGTAGTAACATGCA 57.645 37.500 0.00 0.00 0.00 3.96
452 695 6.947464 AGTAACTTGGAGTAGTAACATGCAT 58.053 36.000 0.00 0.00 0.00 3.96
453 696 8.074613 AGTAACTTGGAGTAGTAACATGCATA 57.925 34.615 0.00 0.00 0.00 3.14
454 697 8.705594 AGTAACTTGGAGTAGTAACATGCATAT 58.294 33.333 0.00 0.00 0.00 1.78
455 698 7.792374 AACTTGGAGTAGTAACATGCATATG 57.208 36.000 0.00 0.00 40.24 1.78
471 714 9.535170 ACATGCATATGTTACTACCTCTATAGT 57.465 33.333 0.00 0.00 45.01 2.12
472 715 9.794685 CATGCATATGTTACTACCTCTATAGTG 57.205 37.037 0.00 0.00 36.09 2.74
473 716 8.349568 TGCATATGTTACTACCTCTATAGTGG 57.650 38.462 17.49 17.49 36.09 4.00
474 717 7.396339 TGCATATGTTACTACCTCTATAGTGGG 59.604 40.741 21.82 16.23 36.09 4.61
475 718 7.147880 GCATATGTTACTACCTCTATAGTGGGG 60.148 44.444 21.82 16.35 36.09 4.96
476 719 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
477 720 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
478 721 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
479 722 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
480 723 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
481 724 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
482 725 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
483 726 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
484 727 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
485 728 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
486 729 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
487 730 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
488 731 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
489 732 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
501 744 5.648178 AACATATGTGTTGTGTCATGCAT 57.352 34.783 9.63 0.00 46.43 3.96
502 745 5.239359 ACATATGTGTTGTGTCATGCATC 57.761 39.130 7.78 0.00 34.01 3.91
503 746 4.701171 ACATATGTGTTGTGTCATGCATCA 59.299 37.500 7.78 0.00 34.01 3.07
504 747 5.358725 ACATATGTGTTGTGTCATGCATCAT 59.641 36.000 7.78 0.00 34.01 2.45
505 748 4.794278 ATGTGTTGTGTCATGCATCATT 57.206 36.364 0.00 0.00 0.00 2.57
506 749 4.587584 TGTGTTGTGTCATGCATCATTT 57.412 36.364 0.00 0.00 0.00 2.32
507 750 4.548494 TGTGTTGTGTCATGCATCATTTC 58.452 39.130 0.00 0.00 0.00 2.17
508 751 4.037684 TGTGTTGTGTCATGCATCATTTCA 59.962 37.500 0.00 0.00 0.00 2.69
509 752 5.165676 GTGTTGTGTCATGCATCATTTCAT 58.834 37.500 0.00 0.00 0.00 2.57
510 753 5.636121 GTGTTGTGTCATGCATCATTTCATT 59.364 36.000 0.00 0.00 0.00 2.57
511 754 6.146510 GTGTTGTGTCATGCATCATTTCATTT 59.853 34.615 0.00 0.00 0.00 2.32
512 755 7.328982 GTGTTGTGTCATGCATCATTTCATTTA 59.671 33.333 0.00 0.00 0.00 1.40
513 756 8.035984 TGTTGTGTCATGCATCATTTCATTTAT 58.964 29.630 0.00 0.00 0.00 1.40
514 757 8.875803 GTTGTGTCATGCATCATTTCATTTATT 58.124 29.630 0.00 0.00 0.00 1.40
516 759 9.738832 TGTGTCATGCATCATTTCATTTATTAG 57.261 29.630 0.00 0.00 0.00 1.73
517 760 9.188588 GTGTCATGCATCATTTCATTTATTAGG 57.811 33.333 0.00 0.00 0.00 2.69
518 761 8.916062 TGTCATGCATCATTTCATTTATTAGGT 58.084 29.630 0.00 0.00 0.00 3.08
519 762 9.754382 GTCATGCATCATTTCATTTATTAGGTT 57.246 29.630 0.00 0.00 0.00 3.50
520 763 9.752961 TCATGCATCATTTCATTTATTAGGTTG 57.247 29.630 0.00 0.00 0.00 3.77
521 764 9.537192 CATGCATCATTTCATTTATTAGGTTGT 57.463 29.630 0.00 0.00 0.00 3.32
568 811 9.817809 ATGATGTTACAGTAACTAGTTATGTGG 57.182 33.333 25.16 16.22 39.38 4.17
569 812 8.809066 TGATGTTACAGTAACTAGTTATGTGGT 58.191 33.333 25.16 19.34 39.38 4.16
570 813 9.649167 GATGTTACAGTAACTAGTTATGTGGTT 57.351 33.333 25.16 13.65 39.38 3.67
579 822 9.874205 GTAACTAGTTATGTGGTTATGTTACCA 57.126 33.333 18.03 0.00 45.73 3.25
588 831 5.755409 TGGTTATGTTACCACATGTCTCT 57.245 39.130 0.00 0.00 43.92 3.10
589 832 6.121776 TGGTTATGTTACCACATGTCTCTT 57.878 37.500 0.00 0.00 43.92 2.85
590 833 6.539173 TGGTTATGTTACCACATGTCTCTTT 58.461 36.000 0.00 0.00 43.92 2.52
591 834 7.001674 TGGTTATGTTACCACATGTCTCTTTT 58.998 34.615 0.00 0.00 43.92 2.27
592 835 7.504238 TGGTTATGTTACCACATGTCTCTTTTT 59.496 33.333 0.00 0.00 43.92 1.94
593 836 8.021396 GGTTATGTTACCACATGTCTCTTTTTC 58.979 37.037 0.00 0.00 43.92 2.29
594 837 8.784043 GTTATGTTACCACATGTCTCTTTTTCT 58.216 33.333 0.00 0.00 43.92 2.52
595 838 7.823745 ATGTTACCACATGTCTCTTTTTCTT 57.176 32.000 0.00 0.00 42.46 2.52
596 839 7.259290 TGTTACCACATGTCTCTTTTTCTTC 57.741 36.000 0.00 0.00 0.00 2.87
597 840 6.018262 TGTTACCACATGTCTCTTTTTCTTCG 60.018 38.462 0.00 0.00 0.00 3.79
598 841 4.451900 ACCACATGTCTCTTTTTCTTCGT 58.548 39.130 0.00 0.00 0.00 3.85
599 842 4.881850 ACCACATGTCTCTTTTTCTTCGTT 59.118 37.500 0.00 0.00 0.00 3.85
600 843 6.053005 ACCACATGTCTCTTTTTCTTCGTTA 58.947 36.000 0.00 0.00 0.00 3.18
601 844 6.540914 ACCACATGTCTCTTTTTCTTCGTTAA 59.459 34.615 0.00 0.00 0.00 2.01
602 845 7.228706 ACCACATGTCTCTTTTTCTTCGTTAAT 59.771 33.333 0.00 0.00 0.00 1.40
603 846 8.076178 CCACATGTCTCTTTTTCTTCGTTAATT 58.924 33.333 0.00 0.00 0.00 1.40
609 852 9.052080 GTCTCTTTTTCTTCGTTAATTACATGC 57.948 33.333 0.00 0.00 0.00 4.06
610 853 8.999431 TCTCTTTTTCTTCGTTAATTACATGCT 58.001 29.630 0.00 0.00 0.00 3.79
611 854 9.612620 CTCTTTTTCTTCGTTAATTACATGCTT 57.387 29.630 0.00 0.00 0.00 3.91
612 855 9.607285 TCTTTTTCTTCGTTAATTACATGCTTC 57.393 29.630 0.00 0.00 0.00 3.86
613 856 9.393249 CTTTTTCTTCGTTAATTACATGCTTCA 57.607 29.630 0.00 0.00 0.00 3.02
614 857 9.906660 TTTTTCTTCGTTAATTACATGCTTCAT 57.093 25.926 0.00 0.00 0.00 2.57
615 858 9.554724 TTTTCTTCGTTAATTACATGCTTCATC 57.445 29.630 0.00 0.00 0.00 2.92
616 859 7.841915 TCTTCGTTAATTACATGCTTCATCA 57.158 32.000 0.00 0.00 0.00 3.07
617 860 8.437360 TCTTCGTTAATTACATGCTTCATCAT 57.563 30.769 0.00 0.00 0.00 2.45
618 861 8.551205 TCTTCGTTAATTACATGCTTCATCATC 58.449 33.333 0.00 0.00 0.00 2.92
619 862 8.437360 TTCGTTAATTACATGCTTCATCATCT 57.563 30.769 0.00 0.00 0.00 2.90
620 863 9.541143 TTCGTTAATTACATGCTTCATCATCTA 57.459 29.630 0.00 0.00 0.00 1.98
621 864 9.710900 TCGTTAATTACATGCTTCATCATCTAT 57.289 29.630 0.00 0.00 0.00 1.98
626 869 9.472361 AATTACATGCTTCATCATCTATTTTGC 57.528 29.630 0.00 0.00 0.00 3.68
627 870 5.839621 ACATGCTTCATCATCTATTTTGCC 58.160 37.500 0.00 0.00 0.00 4.52
628 871 5.597182 ACATGCTTCATCATCTATTTTGCCT 59.403 36.000 0.00 0.00 0.00 4.75
629 872 6.774170 ACATGCTTCATCATCTATTTTGCCTA 59.226 34.615 0.00 0.00 0.00 3.93
630 873 6.872628 TGCTTCATCATCTATTTTGCCTAG 57.127 37.500 0.00 0.00 0.00 3.02
631 874 6.594744 TGCTTCATCATCTATTTTGCCTAGA 58.405 36.000 0.00 0.00 0.00 2.43
632 875 7.229308 TGCTTCATCATCTATTTTGCCTAGAT 58.771 34.615 0.00 0.00 36.58 1.98
633 876 8.377799 TGCTTCATCATCTATTTTGCCTAGATA 58.622 33.333 0.00 0.00 34.84 1.98
634 877 9.224267 GCTTCATCATCTATTTTGCCTAGATAA 57.776 33.333 0.00 0.00 34.84 1.75
662 905 7.540474 TGAGGTTATCATCTATGTTACTCCC 57.460 40.000 0.00 0.00 31.12 4.30
663 906 7.073208 TGAGGTTATCATCTATGTTACTCCCA 58.927 38.462 0.00 0.00 31.12 4.37
664 907 7.015292 TGAGGTTATCATCTATGTTACTCCCAC 59.985 40.741 0.00 0.00 31.12 4.61
665 908 6.270231 AGGTTATCATCTATGTTACTCCCACC 59.730 42.308 0.00 0.00 0.00 4.61
666 909 4.873746 ATCATCTATGTTACTCCCACCG 57.126 45.455 0.00 0.00 0.00 4.94
667 910 2.364324 TCATCTATGTTACTCCCACCGC 59.636 50.000 0.00 0.00 0.00 5.68
668 911 0.742505 TCTATGTTACTCCCACCGCG 59.257 55.000 0.00 0.00 0.00 6.46
669 912 0.742505 CTATGTTACTCCCACCGCGA 59.257 55.000 8.23 0.00 0.00 5.87
670 913 0.742505 TATGTTACTCCCACCGCGAG 59.257 55.000 8.23 0.00 0.00 5.03
671 914 1.255667 ATGTTACTCCCACCGCGAGT 61.256 55.000 8.23 4.91 43.05 4.18
672 915 0.608856 TGTTACTCCCACCGCGAGTA 60.609 55.000 8.23 3.70 40.93 2.59
673 916 0.100146 GTTACTCCCACCGCGAGTAG 59.900 60.000 8.23 0.95 42.30 2.57
674 917 0.322816 TTACTCCCACCGCGAGTAGT 60.323 55.000 8.23 7.24 42.30 2.73
675 918 0.541392 TACTCCCACCGCGAGTAGTA 59.459 55.000 8.23 6.24 40.93 1.82
676 919 0.747283 ACTCCCACCGCGAGTAGTAG 60.747 60.000 8.23 0.00 38.82 2.57
677 920 0.747283 CTCCCACCGCGAGTAGTAGT 60.747 60.000 8.23 0.00 0.00 2.73
678 921 0.745845 TCCCACCGCGAGTAGTAGTC 60.746 60.000 8.23 0.00 0.00 2.59
679 922 0.747283 CCCACCGCGAGTAGTAGTCT 60.747 60.000 8.23 0.00 0.00 3.24
680 923 1.093159 CCACCGCGAGTAGTAGTCTT 58.907 55.000 8.23 0.00 0.00 3.01
681 924 2.283298 CCACCGCGAGTAGTAGTCTTA 58.717 52.381 8.23 0.00 0.00 2.10
695 938 2.886081 AGTCTTAAGCATCAGCACTCG 58.114 47.619 0.00 0.00 45.49 4.18
805 1048 0.107897 TGGTGCTTGTACGGGCATAG 60.108 55.000 14.08 0.00 40.66 2.23
837 1080 0.390860 GCAGATAGGCCGTGATGAGT 59.609 55.000 0.00 0.00 0.00 3.41
839 1082 1.043816 AGATAGGCCGTGATGAGTGG 58.956 55.000 0.00 0.00 0.00 4.00
843 1086 1.448540 GGCCGTGATGAGTGGTGAG 60.449 63.158 0.00 0.00 0.00 3.51
852 1095 0.610174 TGAGTGGTGAGCTGATGACC 59.390 55.000 0.00 0.00 0.00 4.02
853 1096 0.901124 GAGTGGTGAGCTGATGACCT 59.099 55.000 2.74 0.00 0.00 3.85
1244 1501 4.593864 GGAGGTGATCCGGCTCGC 62.594 72.222 10.39 10.39 38.67 5.03
1375 1632 2.699809 CATCGTGCTGCTCGCTTC 59.300 61.111 18.22 0.00 40.11 3.86
1388 1645 2.604174 CGCTTCTTTCCAACGCGGT 61.604 57.895 12.47 0.00 40.11 5.68
1390 1647 1.084289 GCTTCTTTCCAACGCGGTAT 58.916 50.000 12.47 0.00 35.57 2.73
1391 1648 1.202031 GCTTCTTTCCAACGCGGTATG 60.202 52.381 12.47 6.44 35.57 2.39
1392 1649 2.343101 CTTCTTTCCAACGCGGTATGA 58.657 47.619 12.47 0.05 35.57 2.15
1423 1680 3.265791 GAAGTGTATGCTAGCTGCTTGT 58.734 45.455 17.23 0.00 43.37 3.16
1569 1829 3.743396 AGTGCTCGTTCTGAAATCTGAAC 59.257 43.478 18.02 18.02 45.44 3.18
1585 1845 3.132289 TCTGAACGGCTATAGGGTCAAAG 59.868 47.826 1.04 0.00 0.00 2.77
1591 1852 5.638133 ACGGCTATAGGGTCAAAGTCTATA 58.362 41.667 1.04 0.00 0.00 1.31
1641 1903 1.467342 GGGCAACACGAACAGTTATCC 59.533 52.381 0.00 0.00 39.74 2.59
1642 1904 2.423577 GGCAACACGAACAGTTATCCT 58.576 47.619 0.00 0.00 0.00 3.24
1643 1905 4.962384 GGGCAACACGAACAGTTATCCTG 61.962 52.174 0.00 0.00 43.20 3.86
1683 2052 6.259550 AGTTGCTACAAAATGGAGAATGTC 57.740 37.500 0.13 0.00 26.39 3.06
1744 2113 0.752658 GGTTTGGCCAAGCTTCACTT 59.247 50.000 28.53 0.00 40.05 3.16
1802 2172 3.264706 TGGACCTTCGGAAAATGTATGGA 59.735 43.478 0.00 0.00 0.00 3.41
1815 2185 2.503331 TGTATGGAGTGTTGCTTGGTG 58.497 47.619 0.00 0.00 0.00 4.17
1879 2259 6.294731 GGTTATTGTCCTGAATGAAGCAAAGT 60.295 38.462 0.00 0.00 0.00 2.66
1902 2282 7.266400 AGTACTAAATTCGTTCCTTCTGGATC 58.734 38.462 0.00 0.00 42.81 3.36
1970 2357 3.791973 AGCCTTTATGTCACTCTCGAG 57.208 47.619 5.93 5.93 0.00 4.04
2088 2476 4.706842 ATATCCATAGGCGAACCAAACT 57.293 40.909 0.00 0.00 39.06 2.66
2091 2479 4.067972 TCCATAGGCGAACCAAACTATC 57.932 45.455 0.00 0.00 39.06 2.08
2539 2942 4.576053 CAGAATCACAACACAGTTCCTCAA 59.424 41.667 0.00 0.00 0.00 3.02
2541 2944 3.627395 TCACAACACAGTTCCTCAAGT 57.373 42.857 0.00 0.00 0.00 3.16
2586 2992 5.416271 TCTGGGTATTTGTCCTCTTACAC 57.584 43.478 0.00 0.00 0.00 2.90
2693 5320 5.712152 AAGTGGCTGATTTTCTAACCTTG 57.288 39.130 0.00 0.00 0.00 3.61
2760 5387 2.293677 CGATGGTATGCTCCTTACGACT 59.706 50.000 0.00 0.00 0.00 4.18
2816 5443 2.792542 GCAGCAAGATTATTCCACACGC 60.793 50.000 0.00 0.00 0.00 5.34
2964 5591 6.466308 TGTTGACTCTGTTTAACATCATCG 57.534 37.500 0.00 0.00 0.00 3.84
2975 5602 1.089920 ACATCATCGCAGCTTCCAAC 58.910 50.000 0.00 0.00 0.00 3.77
3098 5726 7.590689 GGCATTTGATGTGTAAAACCATTTTTG 59.409 33.333 0.00 0.00 35.62 2.44
3099 5727 8.341173 GCATTTGATGTGTAAAACCATTTTTGA 58.659 29.630 0.00 0.00 35.62 2.69
3147 5777 9.005777 GTTTACAAAGTCATACTTATTCCCACA 57.994 33.333 0.00 0.00 37.47 4.17
3148 5778 8.556213 TTACAAAGTCATACTTATTCCCACAC 57.444 34.615 0.00 0.00 37.47 3.82
3150 5780 6.180472 CAAAGTCATACTTATTCCCACACCT 58.820 40.000 0.00 0.00 37.47 4.00
3151 5781 5.615925 AGTCATACTTATTCCCACACCTC 57.384 43.478 0.00 0.00 0.00 3.85
3152 5782 4.409247 AGTCATACTTATTCCCACACCTCC 59.591 45.833 0.00 0.00 0.00 4.30
3171 5801 3.110705 TCCTAGGTACTACTCTGGACGT 58.889 50.000 9.08 0.00 41.75 4.34
3225 5855 4.254492 AGCCCTTTTAGAGATTTCGACAC 58.746 43.478 0.00 0.00 0.00 3.67
3284 5914 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3295 5925 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
3299 5929 3.680642 TGCTTCGTATGTAGTCCGTAC 57.319 47.619 0.00 0.00 33.02 3.67
3302 5932 3.547613 GCTTCGTATGTAGTCCGTACTGG 60.548 52.174 0.00 0.00 36.36 4.00
3316 5946 5.266788 TCCGTACTGGAATCTCTTAAAGGA 58.733 41.667 4.28 0.00 46.38 3.36
3321 5951 7.701501 CGTACTGGAATCTCTTAAAGGACTTAC 59.298 40.741 0.00 0.00 0.00 2.34
3337 5967 5.128335 AGGACTTACATTTAGTAACGGAGGG 59.872 44.000 0.00 0.00 37.77 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 127 4.937620 GTGCAGGTAAATCACTTCTGATGA 59.062 41.667 0.00 0.00 37.20 2.92
42 128 4.696877 TGTGCAGGTAAATCACTTCTGATG 59.303 41.667 0.00 0.00 37.20 3.07
59 302 3.557185 ACACAATCGCATACTATGTGCAG 59.443 43.478 4.90 1.05 43.89 4.41
70 313 6.794374 TGAGCATTTATTTACACAATCGCAT 58.206 32.000 0.00 0.00 0.00 4.73
73 316 8.839947 TTGATGAGCATTTATTTACACAATCG 57.160 30.769 0.00 0.00 0.00 3.34
151 394 9.588096 ACTTACCTTCTGAACCAATTCTATTTT 57.412 29.630 0.00 0.00 35.69 1.82
152 395 9.588096 AACTTACCTTCTGAACCAATTCTATTT 57.412 29.630 0.00 0.00 35.69 1.40
156 399 9.588096 AATTAACTTACCTTCTGAACCAATTCT 57.412 29.630 0.00 0.00 35.69 2.40
179 422 8.567948 CCCGTACAATAAGCAATCATCTTAATT 58.432 33.333 0.00 0.00 30.76 1.40
180 423 7.936847 TCCCGTACAATAAGCAATCATCTTAAT 59.063 33.333 0.00 0.00 30.76 1.40
181 424 7.276658 TCCCGTACAATAAGCAATCATCTTAA 58.723 34.615 0.00 0.00 30.76 1.85
182 425 6.822442 TCCCGTACAATAAGCAATCATCTTA 58.178 36.000 0.00 0.00 0.00 2.10
183 426 5.680619 TCCCGTACAATAAGCAATCATCTT 58.319 37.500 0.00 0.00 0.00 2.40
184 427 5.290493 TCCCGTACAATAAGCAATCATCT 57.710 39.130 0.00 0.00 0.00 2.90
185 428 6.371809 TTTCCCGTACAATAAGCAATCATC 57.628 37.500 0.00 0.00 0.00 2.92
186 429 5.299279 CCTTTCCCGTACAATAAGCAATCAT 59.701 40.000 0.00 0.00 0.00 2.45
187 430 4.638421 CCTTTCCCGTACAATAAGCAATCA 59.362 41.667 0.00 0.00 0.00 2.57
188 431 4.638865 ACCTTTCCCGTACAATAAGCAATC 59.361 41.667 0.00 0.00 0.00 2.67
189 432 4.595986 ACCTTTCCCGTACAATAAGCAAT 58.404 39.130 0.00 0.00 0.00 3.56
190 433 4.023726 ACCTTTCCCGTACAATAAGCAA 57.976 40.909 0.00 0.00 0.00 3.91
191 434 3.706600 ACCTTTCCCGTACAATAAGCA 57.293 42.857 0.00 0.00 0.00 3.91
192 435 4.004982 TCAACCTTTCCCGTACAATAAGC 58.995 43.478 0.00 0.00 0.00 3.09
193 436 5.390145 CGTTCAACCTTTCCCGTACAATAAG 60.390 44.000 0.00 0.00 0.00 1.73
194 437 4.451774 CGTTCAACCTTTCCCGTACAATAA 59.548 41.667 0.00 0.00 0.00 1.40
195 438 3.995705 CGTTCAACCTTTCCCGTACAATA 59.004 43.478 0.00 0.00 0.00 1.90
196 439 2.809696 CGTTCAACCTTTCCCGTACAAT 59.190 45.455 0.00 0.00 0.00 2.71
197 440 2.158986 TCGTTCAACCTTTCCCGTACAA 60.159 45.455 0.00 0.00 0.00 2.41
198 441 1.411977 TCGTTCAACCTTTCCCGTACA 59.588 47.619 0.00 0.00 0.00 2.90
199 442 2.153366 TCGTTCAACCTTTCCCGTAC 57.847 50.000 0.00 0.00 0.00 3.67
200 443 2.548493 CCTTCGTTCAACCTTTCCCGTA 60.548 50.000 0.00 0.00 0.00 4.02
201 444 1.589803 CTTCGTTCAACCTTTCCCGT 58.410 50.000 0.00 0.00 0.00 5.28
202 445 0.872388 CCTTCGTTCAACCTTTCCCG 59.128 55.000 0.00 0.00 0.00 5.14
203 446 0.596577 GCCTTCGTTCAACCTTTCCC 59.403 55.000 0.00 0.00 0.00 3.97
204 447 0.237498 CGCCTTCGTTCAACCTTTCC 59.763 55.000 0.00 0.00 0.00 3.13
205 448 3.748021 CGCCTTCGTTCAACCTTTC 57.252 52.632 0.00 0.00 0.00 2.62
216 459 0.245539 TTCTTCCTACCACGCCTTCG 59.754 55.000 0.00 0.00 42.43 3.79
217 460 2.028385 TCTTTCTTCCTACCACGCCTTC 60.028 50.000 0.00 0.00 0.00 3.46
218 461 1.975680 TCTTTCTTCCTACCACGCCTT 59.024 47.619 0.00 0.00 0.00 4.35
219 462 1.640917 TCTTTCTTCCTACCACGCCT 58.359 50.000 0.00 0.00 0.00 5.52
220 463 2.093658 TCATCTTTCTTCCTACCACGCC 60.094 50.000 0.00 0.00 0.00 5.68
221 464 3.247006 TCATCTTTCTTCCTACCACGC 57.753 47.619 0.00 0.00 0.00 5.34
222 465 4.631813 CCTTTCATCTTTCTTCCTACCACG 59.368 45.833 0.00 0.00 0.00 4.94
223 466 5.805728 TCCTTTCATCTTTCTTCCTACCAC 58.194 41.667 0.00 0.00 0.00 4.16
224 467 5.785423 TCTCCTTTCATCTTTCTTCCTACCA 59.215 40.000 0.00 0.00 0.00 3.25
225 468 6.110033 GTCTCCTTTCATCTTTCTTCCTACC 58.890 44.000 0.00 0.00 0.00 3.18
226 469 6.070481 AGGTCTCCTTTCATCTTTCTTCCTAC 60.070 42.308 0.00 0.00 0.00 3.18
227 470 6.026186 AGGTCTCCTTTCATCTTTCTTCCTA 58.974 40.000 0.00 0.00 0.00 2.94
228 471 4.849235 AGGTCTCCTTTCATCTTTCTTCCT 59.151 41.667 0.00 0.00 0.00 3.36
229 472 5.172687 AGGTCTCCTTTCATCTTTCTTCC 57.827 43.478 0.00 0.00 0.00 3.46
230 473 6.311690 CGTAAGGTCTCCTTTCATCTTTCTTC 59.688 42.308 6.35 0.00 41.69 2.87
231 474 6.166982 CGTAAGGTCTCCTTTCATCTTTCTT 58.833 40.000 6.35 0.00 41.69 2.52
232 475 5.246429 ACGTAAGGTCTCCTTTCATCTTTCT 59.754 40.000 6.35 0.00 41.69 2.52
233 476 5.480205 ACGTAAGGTCTCCTTTCATCTTTC 58.520 41.667 6.35 0.00 41.69 2.62
234 477 5.485209 ACGTAAGGTCTCCTTTCATCTTT 57.515 39.130 6.35 0.00 41.69 2.52
235 478 5.485209 AACGTAAGGTCTCCTTTCATCTT 57.515 39.130 6.35 0.00 41.69 2.40
293 536 9.120538 TCAGCACATAGAGTTTTTCTTTTAAGT 57.879 29.630 0.00 0.00 37.36 2.24
295 538 9.897744 CATCAGCACATAGAGTTTTTCTTTTAA 57.102 29.630 0.00 0.00 37.36 1.52
296 539 9.066892 ACATCAGCACATAGAGTTTTTCTTTTA 57.933 29.630 0.00 0.00 37.36 1.52
297 540 7.864379 CACATCAGCACATAGAGTTTTTCTTTT 59.136 33.333 0.00 0.00 37.36 2.27
298 541 7.365741 CACATCAGCACATAGAGTTTTTCTTT 58.634 34.615 0.00 0.00 37.36 2.52
299 542 6.072286 CCACATCAGCACATAGAGTTTTTCTT 60.072 38.462 0.00 0.00 37.36 2.52
300 543 5.413833 CCACATCAGCACATAGAGTTTTTCT 59.586 40.000 0.00 0.00 40.06 2.52
301 544 5.634896 CCACATCAGCACATAGAGTTTTTC 58.365 41.667 0.00 0.00 0.00 2.29
302 545 4.082571 GCCACATCAGCACATAGAGTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
303 546 3.441572 GCCACATCAGCACATAGAGTTTT 59.558 43.478 0.00 0.00 0.00 2.43
304 547 3.012518 GCCACATCAGCACATAGAGTTT 58.987 45.455 0.00 0.00 0.00 2.66
305 548 2.238144 AGCCACATCAGCACATAGAGTT 59.762 45.455 0.00 0.00 0.00 3.01
306 549 1.836166 AGCCACATCAGCACATAGAGT 59.164 47.619 0.00 0.00 0.00 3.24
307 550 2.210961 CAGCCACATCAGCACATAGAG 58.789 52.381 0.00 0.00 0.00 2.43
308 551 1.134310 CCAGCCACATCAGCACATAGA 60.134 52.381 0.00 0.00 0.00 1.98
309 552 1.306148 CCAGCCACATCAGCACATAG 58.694 55.000 0.00 0.00 0.00 2.23
310 553 0.749091 GCCAGCCACATCAGCACATA 60.749 55.000 0.00 0.00 0.00 2.29
311 554 2.050350 GCCAGCCACATCAGCACAT 61.050 57.895 0.00 0.00 0.00 3.21
312 555 2.674033 GCCAGCCACATCAGCACA 60.674 61.111 0.00 0.00 0.00 4.57
313 556 2.360852 AGCCAGCCACATCAGCAC 60.361 61.111 0.00 0.00 0.00 4.40
314 557 2.360726 CAGCCAGCCACATCAGCA 60.361 61.111 0.00 0.00 0.00 4.41
315 558 3.138798 CCAGCCAGCCACATCAGC 61.139 66.667 0.00 0.00 0.00 4.26
316 559 1.451567 CTCCAGCCAGCCACATCAG 60.452 63.158 0.00 0.00 0.00 2.90
317 560 2.672908 CTCCAGCCAGCCACATCA 59.327 61.111 0.00 0.00 0.00 3.07
318 561 2.124403 CCTCCAGCCAGCCACATC 60.124 66.667 0.00 0.00 0.00 3.06
319 562 4.437587 GCCTCCAGCCAGCCACAT 62.438 66.667 0.00 0.00 34.35 3.21
335 578 1.003116 CATGAACTATTCTGGCAGCGC 60.003 52.381 10.34 0.00 0.00 5.92
336 579 1.003116 GCATGAACTATTCTGGCAGCG 60.003 52.381 10.34 0.49 32.34 5.18
337 580 1.336125 GGCATGAACTATTCTGGCAGC 59.664 52.381 10.34 0.00 35.26 5.25
338 581 1.952296 GGGCATGAACTATTCTGGCAG 59.048 52.381 8.58 8.58 36.13 4.85
339 582 1.565759 AGGGCATGAACTATTCTGGCA 59.434 47.619 0.00 0.00 36.13 4.92
340 583 2.355010 AGGGCATGAACTATTCTGGC 57.645 50.000 0.00 0.00 34.80 4.85
341 584 6.094603 GCATATAAGGGCATGAACTATTCTGG 59.905 42.308 0.00 0.00 0.00 3.86
342 585 6.183360 CGCATATAAGGGCATGAACTATTCTG 60.183 42.308 0.00 0.00 0.00 3.02
343 586 5.877012 CGCATATAAGGGCATGAACTATTCT 59.123 40.000 0.00 0.00 0.00 2.40
344 587 5.643777 ACGCATATAAGGGCATGAACTATTC 59.356 40.000 0.00 0.00 0.00 1.75
345 588 5.412594 CACGCATATAAGGGCATGAACTATT 59.587 40.000 0.00 0.00 0.00 1.73
346 589 4.937620 CACGCATATAAGGGCATGAACTAT 59.062 41.667 0.00 0.00 0.00 2.12
347 590 4.314961 CACGCATATAAGGGCATGAACTA 58.685 43.478 0.00 0.00 0.00 2.24
348 591 3.141398 CACGCATATAAGGGCATGAACT 58.859 45.455 0.00 0.00 0.00 3.01
349 592 2.226437 CCACGCATATAAGGGCATGAAC 59.774 50.000 0.00 0.00 0.00 3.18
350 593 2.105649 TCCACGCATATAAGGGCATGAA 59.894 45.455 0.00 0.00 0.00 2.57
351 594 1.696884 TCCACGCATATAAGGGCATGA 59.303 47.619 0.00 0.00 0.00 3.07
352 595 2.183478 TCCACGCATATAAGGGCATG 57.817 50.000 0.00 0.00 0.00 4.06
353 596 2.618816 CCATCCACGCATATAAGGGCAT 60.619 50.000 0.00 0.00 0.00 4.40
354 597 1.271325 CCATCCACGCATATAAGGGCA 60.271 52.381 0.00 0.00 0.00 5.36
355 598 1.453155 CCATCCACGCATATAAGGGC 58.547 55.000 0.00 0.00 0.00 5.19
356 599 1.003580 AGCCATCCACGCATATAAGGG 59.996 52.381 0.00 0.00 0.00 3.95
357 600 2.079158 CAGCCATCCACGCATATAAGG 58.921 52.381 0.00 0.00 0.00 2.69
358 601 2.079158 CCAGCCATCCACGCATATAAG 58.921 52.381 0.00 0.00 0.00 1.73
359 602 1.696884 TCCAGCCATCCACGCATATAA 59.303 47.619 0.00 0.00 0.00 0.98
360 603 1.347062 TCCAGCCATCCACGCATATA 58.653 50.000 0.00 0.00 0.00 0.86
361 604 0.694771 ATCCAGCCATCCACGCATAT 59.305 50.000 0.00 0.00 0.00 1.78
362 605 0.250424 CATCCAGCCATCCACGCATA 60.250 55.000 0.00 0.00 0.00 3.14
363 606 1.527611 CATCCAGCCATCCACGCAT 60.528 57.895 0.00 0.00 0.00 4.73
364 607 2.124612 CATCCAGCCATCCACGCA 60.125 61.111 0.00 0.00 0.00 5.24
365 608 3.589881 GCATCCAGCCATCCACGC 61.590 66.667 0.00 0.00 37.23 5.34
374 617 1.076485 AACCATCCAGGCATCCAGC 60.076 57.895 0.00 0.00 43.14 4.85
375 618 0.256752 TGAACCATCCAGGCATCCAG 59.743 55.000 0.00 0.00 43.14 3.86
376 619 0.928505 ATGAACCATCCAGGCATCCA 59.071 50.000 0.00 0.00 43.14 3.41
377 620 1.133699 TCATGAACCATCCAGGCATCC 60.134 52.381 0.00 0.00 43.14 3.51
378 621 1.952296 GTCATGAACCATCCAGGCATC 59.048 52.381 0.00 0.00 43.14 3.91
379 622 1.567649 AGTCATGAACCATCCAGGCAT 59.432 47.619 0.00 0.00 43.14 4.40
380 623 0.994247 AGTCATGAACCATCCAGGCA 59.006 50.000 0.00 0.00 43.14 4.75
381 624 1.747355 CAAGTCATGAACCATCCAGGC 59.253 52.381 0.00 0.00 43.14 4.85
382 625 2.751259 CACAAGTCATGAACCATCCAGG 59.249 50.000 0.00 0.00 45.67 4.45
383 626 2.163010 GCACAAGTCATGAACCATCCAG 59.837 50.000 0.00 0.00 0.00 3.86
384 627 2.161855 GCACAAGTCATGAACCATCCA 58.838 47.619 0.00 0.00 0.00 3.41
385 628 1.474077 GGCACAAGTCATGAACCATCC 59.526 52.381 0.00 0.00 0.00 3.51
386 629 1.131126 CGGCACAAGTCATGAACCATC 59.869 52.381 0.00 0.00 0.00 3.51
387 630 1.167851 CGGCACAAGTCATGAACCAT 58.832 50.000 0.00 0.00 0.00 3.55
388 631 0.107643 TCGGCACAAGTCATGAACCA 59.892 50.000 0.00 0.00 0.00 3.67
389 632 1.398390 GATCGGCACAAGTCATGAACC 59.602 52.381 0.00 0.00 0.00 3.62
390 633 2.076100 TGATCGGCACAAGTCATGAAC 58.924 47.619 0.00 0.00 0.00 3.18
391 634 2.028203 TCTGATCGGCACAAGTCATGAA 60.028 45.455 0.00 0.00 0.00 2.57
392 635 1.550072 TCTGATCGGCACAAGTCATGA 59.450 47.619 0.00 0.00 0.00 3.07
393 636 1.662629 GTCTGATCGGCACAAGTCATG 59.337 52.381 0.00 0.00 0.00 3.07
394 637 1.552337 AGTCTGATCGGCACAAGTCAT 59.448 47.619 0.00 0.00 0.00 3.06
395 638 0.969149 AGTCTGATCGGCACAAGTCA 59.031 50.000 0.00 0.00 0.00 3.41
396 639 2.164624 ACTAGTCTGATCGGCACAAGTC 59.835 50.000 0.00 0.00 0.00 3.01
397 640 2.164624 GACTAGTCTGATCGGCACAAGT 59.835 50.000 15.91 0.00 0.00 3.16
398 641 2.164422 TGACTAGTCTGATCGGCACAAG 59.836 50.000 23.01 0.00 0.00 3.16
399 642 2.094700 GTGACTAGTCTGATCGGCACAA 60.095 50.000 23.01 0.00 0.00 3.33
400 643 1.472878 GTGACTAGTCTGATCGGCACA 59.527 52.381 23.01 0.00 0.00 4.57
401 644 1.472878 TGTGACTAGTCTGATCGGCAC 59.527 52.381 23.01 11.54 0.00 5.01
402 645 1.745653 CTGTGACTAGTCTGATCGGCA 59.254 52.381 23.01 9.66 0.00 5.69
403 646 1.746220 ACTGTGACTAGTCTGATCGGC 59.254 52.381 23.01 6.05 0.00 5.54
404 647 2.098280 CCACTGTGACTAGTCTGATCGG 59.902 54.545 23.01 16.37 0.00 4.18
405 648 2.098280 CCCACTGTGACTAGTCTGATCG 59.902 54.545 23.01 9.32 0.00 3.69
406 649 2.428890 CCCCACTGTGACTAGTCTGATC 59.571 54.545 23.01 11.47 0.00 2.92
407 650 2.043115 TCCCCACTGTGACTAGTCTGAT 59.957 50.000 23.01 4.28 0.00 2.90
408 651 1.427753 TCCCCACTGTGACTAGTCTGA 59.572 52.381 23.01 9.03 0.00 3.27
409 652 1.821753 CTCCCCACTGTGACTAGTCTG 59.178 57.143 23.01 12.82 0.00 3.51
410 653 1.429687 ACTCCCCACTGTGACTAGTCT 59.570 52.381 23.01 0.19 0.00 3.24
411 654 1.926108 ACTCCCCACTGTGACTAGTC 58.074 55.000 16.32 16.32 0.00 2.59
412 655 3.163467 GTTACTCCCCACTGTGACTAGT 58.837 50.000 9.86 10.99 0.00 2.57
413 656 3.432378 AGTTACTCCCCACTGTGACTAG 58.568 50.000 9.86 5.62 32.48 2.57
414 657 3.537795 AGTTACTCCCCACTGTGACTA 57.462 47.619 9.86 0.00 32.48 2.59
415 658 2.368875 CAAGTTACTCCCCACTGTGACT 59.631 50.000 9.86 0.00 35.08 3.41
416 659 2.550208 CCAAGTTACTCCCCACTGTGAC 60.550 54.545 9.86 0.00 0.00 3.67
417 660 1.697432 CCAAGTTACTCCCCACTGTGA 59.303 52.381 9.86 0.00 0.00 3.58
418 661 1.697432 TCCAAGTTACTCCCCACTGTG 59.303 52.381 0.00 0.00 0.00 3.66
419 662 1.978580 CTCCAAGTTACTCCCCACTGT 59.021 52.381 0.00 0.00 0.00 3.55
420 663 1.978580 ACTCCAAGTTACTCCCCACTG 59.021 52.381 0.00 0.00 0.00 3.66
421 664 2.417719 ACTCCAAGTTACTCCCCACT 57.582 50.000 0.00 0.00 0.00 4.00
422 665 3.171528 ACTACTCCAAGTTACTCCCCAC 58.828 50.000 0.00 0.00 0.00 4.61
423 666 3.555117 ACTACTCCAAGTTACTCCCCA 57.445 47.619 0.00 0.00 0.00 4.96
424 667 4.774200 TGTTACTACTCCAAGTTACTCCCC 59.226 45.833 0.00 0.00 31.82 4.81
425 668 5.990120 TGTTACTACTCCAAGTTACTCCC 57.010 43.478 0.00 0.00 31.82 4.30
426 669 5.811100 GCATGTTACTACTCCAAGTTACTCC 59.189 44.000 0.00 0.00 31.82 3.85
427 670 6.395629 TGCATGTTACTACTCCAAGTTACTC 58.604 40.000 0.00 0.00 31.82 2.59
428 671 6.354794 TGCATGTTACTACTCCAAGTTACT 57.645 37.500 0.00 0.00 31.82 2.24
429 672 8.765219 CATATGCATGTTACTACTCCAAGTTAC 58.235 37.037 10.16 0.00 31.32 2.50
430 673 8.482943 ACATATGCATGTTACTACTCCAAGTTA 58.517 33.333 10.16 0.00 42.98 2.24
431 674 7.338710 ACATATGCATGTTACTACTCCAAGTT 58.661 34.615 10.16 0.00 42.98 2.66
432 675 6.889198 ACATATGCATGTTACTACTCCAAGT 58.111 36.000 10.16 0.00 42.98 3.16
446 689 9.794685 CACTATAGAGGTAGTAACATATGCATG 57.205 37.037 10.16 0.00 34.40 4.06
447 690 8.972127 CCACTATAGAGGTAGTAACATATGCAT 58.028 37.037 6.78 3.79 33.29 3.96
448 691 7.396339 CCCACTATAGAGGTAGTAACATATGCA 59.604 40.741 14.29 0.00 33.29 3.96
449 692 7.147880 CCCCACTATAGAGGTAGTAACATATGC 60.148 44.444 14.29 0.00 33.29 3.14
450 693 8.114102 TCCCCACTATAGAGGTAGTAACATATG 58.886 40.741 14.29 0.00 33.29 1.78
451 694 8.240881 TCCCCACTATAGAGGTAGTAACATAT 57.759 38.462 14.29 0.00 33.29 1.78
452 695 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
453 696 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
454 697 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
455 698 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
456 699 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
457 700 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
458 701 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
459 702 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
460 703 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
461 704 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
462 705 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
463 706 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
464 707 7.302948 ACACATATGTTACTCCCCACTATAGA 58.697 38.462 5.37 0.00 34.46 1.98
465 708 7.540474 ACACATATGTTACTCCCCACTATAG 57.460 40.000 5.37 0.00 34.46 1.31
480 723 4.701171 TGATGCATGACACAACACATATGT 59.299 37.500 2.46 1.41 42.46 2.29
481 724 5.238006 TGATGCATGACACAACACATATG 57.762 39.130 2.46 0.00 0.00 1.78
482 725 6.459670 AATGATGCATGACACAACACATAT 57.540 33.333 2.46 0.00 0.00 1.78
483 726 5.900865 AATGATGCATGACACAACACATA 57.099 34.783 2.46 0.00 0.00 2.29
484 727 4.794278 AATGATGCATGACACAACACAT 57.206 36.364 2.46 0.00 0.00 3.21
485 728 4.037684 TGAAATGATGCATGACACAACACA 59.962 37.500 2.46 0.00 0.00 3.72
486 729 4.548494 TGAAATGATGCATGACACAACAC 58.452 39.130 2.46 0.00 0.00 3.32
487 730 4.850347 TGAAATGATGCATGACACAACA 57.150 36.364 2.46 0.00 0.00 3.33
488 731 6.715344 AAATGAAATGATGCATGACACAAC 57.285 33.333 2.46 0.00 0.00 3.32
490 733 9.738832 CTAATAAATGAAATGATGCATGACACA 57.261 29.630 2.46 0.00 0.00 3.72
491 734 9.188588 CCTAATAAATGAAATGATGCATGACAC 57.811 33.333 2.46 0.00 0.00 3.67
492 735 8.916062 ACCTAATAAATGAAATGATGCATGACA 58.084 29.630 2.46 0.00 0.00 3.58
493 736 9.754382 AACCTAATAAATGAAATGATGCATGAC 57.246 29.630 2.46 0.00 0.00 3.06
494 737 9.752961 CAACCTAATAAATGAAATGATGCATGA 57.247 29.630 2.46 0.00 0.00 3.07
495 738 9.537192 ACAACCTAATAAATGAAATGATGCATG 57.463 29.630 2.46 0.00 0.00 4.06
542 785 9.817809 CCACATAACTAGTTACTGTAACATCAT 57.182 33.333 27.12 15.39 41.07 2.45
543 786 8.809066 ACCACATAACTAGTTACTGTAACATCA 58.191 33.333 27.12 13.90 41.07 3.07
544 787 9.649167 AACCACATAACTAGTTACTGTAACATC 57.351 33.333 27.12 6.09 41.07 3.06
553 796 9.874205 TGGTAACATAACCACATAACTAGTTAC 57.126 33.333 17.45 2.47 44.68 2.50
573 816 6.018180 ACGAAGAAAAAGAGACATGTGGTAAC 60.018 38.462 1.15 0.00 0.00 2.50
574 817 6.053005 ACGAAGAAAAAGAGACATGTGGTAA 58.947 36.000 1.15 0.00 0.00 2.85
575 818 5.607477 ACGAAGAAAAAGAGACATGTGGTA 58.393 37.500 1.15 0.00 0.00 3.25
576 819 4.451900 ACGAAGAAAAAGAGACATGTGGT 58.548 39.130 1.15 0.00 0.00 4.16
577 820 5.424121 AACGAAGAAAAAGAGACATGTGG 57.576 39.130 1.15 0.00 0.00 4.17
583 826 9.052080 GCATGTAATTAACGAAGAAAAAGAGAC 57.948 33.333 0.00 0.00 0.00 3.36
584 827 8.999431 AGCATGTAATTAACGAAGAAAAAGAGA 58.001 29.630 0.00 0.00 0.00 3.10
585 828 9.612620 AAGCATGTAATTAACGAAGAAAAAGAG 57.387 29.630 0.00 0.00 0.00 2.85
586 829 9.607285 GAAGCATGTAATTAACGAAGAAAAAGA 57.393 29.630 0.00 0.00 0.00 2.52
587 830 9.393249 TGAAGCATGTAATTAACGAAGAAAAAG 57.607 29.630 0.00 0.00 0.00 2.27
588 831 9.906660 ATGAAGCATGTAATTAACGAAGAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
589 832 9.554724 GATGAAGCATGTAATTAACGAAGAAAA 57.445 29.630 0.00 0.00 0.00 2.29
590 833 8.726068 TGATGAAGCATGTAATTAACGAAGAAA 58.274 29.630 0.00 0.00 0.00 2.52
591 834 8.262715 TGATGAAGCATGTAATTAACGAAGAA 57.737 30.769 0.00 0.00 0.00 2.52
592 835 7.841915 TGATGAAGCATGTAATTAACGAAGA 57.158 32.000 0.00 0.00 0.00 2.87
593 836 8.554528 AGATGATGAAGCATGTAATTAACGAAG 58.445 33.333 0.00 0.00 0.00 3.79
594 837 8.437360 AGATGATGAAGCATGTAATTAACGAA 57.563 30.769 0.00 0.00 0.00 3.85
595 838 9.710900 ATAGATGATGAAGCATGTAATTAACGA 57.289 29.630 0.00 0.00 29.35 3.85
600 843 9.472361 GCAAAATAGATGATGAAGCATGTAATT 57.528 29.630 0.00 0.00 29.35 1.40
601 844 8.086522 GGCAAAATAGATGATGAAGCATGTAAT 58.913 33.333 0.00 0.00 29.35 1.89
602 845 7.286087 AGGCAAAATAGATGATGAAGCATGTAA 59.714 33.333 0.00 0.00 29.35 2.41
603 846 6.774170 AGGCAAAATAGATGATGAAGCATGTA 59.226 34.615 0.00 0.00 0.00 2.29
604 847 5.597182 AGGCAAAATAGATGATGAAGCATGT 59.403 36.000 0.00 0.00 0.00 3.21
605 848 6.085555 AGGCAAAATAGATGATGAAGCATG 57.914 37.500 0.00 0.00 0.00 4.06
606 849 7.229308 TCTAGGCAAAATAGATGATGAAGCAT 58.771 34.615 0.00 0.00 0.00 3.79
607 850 6.594744 TCTAGGCAAAATAGATGATGAAGCA 58.405 36.000 0.00 0.00 0.00 3.91
608 851 7.684937 ATCTAGGCAAAATAGATGATGAAGC 57.315 36.000 0.00 0.00 38.32 3.86
636 879 9.256228 GGGAGTAACATAGATGATAACCTCATA 57.744 37.037 0.00 0.00 44.83 2.15
638 881 7.015292 GTGGGAGTAACATAGATGATAACCTCA 59.985 40.741 0.00 0.00 38.53 3.86
639 882 7.379750 GTGGGAGTAACATAGATGATAACCTC 58.620 42.308 0.00 0.00 0.00 3.85
640 883 6.270231 GGTGGGAGTAACATAGATGATAACCT 59.730 42.308 0.00 0.00 0.00 3.50
641 884 6.465084 GGTGGGAGTAACATAGATGATAACC 58.535 44.000 0.00 0.00 0.00 2.85
642 885 6.157211 CGGTGGGAGTAACATAGATGATAAC 58.843 44.000 0.00 0.00 0.00 1.89
643 886 5.279306 GCGGTGGGAGTAACATAGATGATAA 60.279 44.000 0.00 0.00 0.00 1.75
644 887 4.219944 GCGGTGGGAGTAACATAGATGATA 59.780 45.833 0.00 0.00 0.00 2.15
645 888 3.006967 GCGGTGGGAGTAACATAGATGAT 59.993 47.826 0.00 0.00 0.00 2.45
646 889 2.364324 GCGGTGGGAGTAACATAGATGA 59.636 50.000 0.00 0.00 0.00 2.92
647 890 2.755650 GCGGTGGGAGTAACATAGATG 58.244 52.381 0.00 0.00 0.00 2.90
648 891 1.340248 CGCGGTGGGAGTAACATAGAT 59.660 52.381 0.00 0.00 0.00 1.98
649 892 0.742505 CGCGGTGGGAGTAACATAGA 59.257 55.000 0.00 0.00 0.00 1.98
650 893 0.742505 TCGCGGTGGGAGTAACATAG 59.257 55.000 6.13 0.00 0.00 2.23
651 894 0.742505 CTCGCGGTGGGAGTAACATA 59.257 55.000 6.13 0.00 37.75 2.29
652 895 1.515954 CTCGCGGTGGGAGTAACAT 59.484 57.895 6.13 0.00 37.75 2.71
653 896 2.967397 CTCGCGGTGGGAGTAACA 59.033 61.111 6.13 0.00 37.75 2.41
658 901 0.747283 ACTACTACTCGCGGTGGGAG 60.747 60.000 17.54 17.54 46.05 4.30
659 902 0.745845 GACTACTACTCGCGGTGGGA 60.746 60.000 6.13 0.49 0.00 4.37
660 903 0.747283 AGACTACTACTCGCGGTGGG 60.747 60.000 6.13 3.90 0.00 4.61
661 904 1.093159 AAGACTACTACTCGCGGTGG 58.907 55.000 6.13 7.95 0.00 4.61
662 905 3.788135 GCTTAAGACTACTACTCGCGGTG 60.788 52.174 6.13 1.77 0.00 4.94
663 906 2.354199 GCTTAAGACTACTACTCGCGGT 59.646 50.000 6.13 5.79 0.00 5.68
664 907 2.353889 TGCTTAAGACTACTACTCGCGG 59.646 50.000 6.13 0.00 0.00 6.46
665 908 3.670311 TGCTTAAGACTACTACTCGCG 57.330 47.619 6.67 0.00 0.00 5.87
666 909 5.171147 TGATGCTTAAGACTACTACTCGC 57.829 43.478 6.67 0.00 0.00 5.03
667 910 5.209240 GCTGATGCTTAAGACTACTACTCG 58.791 45.833 6.67 0.00 36.03 4.18
668 911 5.974751 GTGCTGATGCTTAAGACTACTACTC 59.025 44.000 6.67 0.00 40.48 2.59
669 912 5.654650 AGTGCTGATGCTTAAGACTACTACT 59.345 40.000 6.67 0.00 40.48 2.57
670 913 5.897050 AGTGCTGATGCTTAAGACTACTAC 58.103 41.667 6.67 0.00 40.48 2.73
671 914 5.220873 CGAGTGCTGATGCTTAAGACTACTA 60.221 44.000 6.67 0.00 40.48 1.82
672 915 4.439426 CGAGTGCTGATGCTTAAGACTACT 60.439 45.833 6.67 0.10 40.48 2.57
673 916 3.794028 CGAGTGCTGATGCTTAAGACTAC 59.206 47.826 6.67 0.00 40.48 2.73
674 917 3.444034 ACGAGTGCTGATGCTTAAGACTA 59.556 43.478 6.67 0.00 40.48 2.59
675 918 2.232452 ACGAGTGCTGATGCTTAAGACT 59.768 45.455 6.67 0.00 40.48 3.24
676 919 2.346847 CACGAGTGCTGATGCTTAAGAC 59.653 50.000 6.67 0.00 40.48 3.01
677 920 2.231235 TCACGAGTGCTGATGCTTAAGA 59.769 45.455 6.67 0.00 40.48 2.10
678 921 2.602211 CTCACGAGTGCTGATGCTTAAG 59.398 50.000 0.00 0.00 40.48 1.85
679 922 2.029020 ACTCACGAGTGCTGATGCTTAA 60.029 45.455 0.00 0.00 40.75 1.85
680 923 1.546029 ACTCACGAGTGCTGATGCTTA 59.454 47.619 0.00 0.00 40.75 3.09
681 924 0.319728 ACTCACGAGTGCTGATGCTT 59.680 50.000 0.00 0.00 40.75 3.91
695 938 1.081376 CGACGTGGTCAGGACTCAC 60.081 63.158 0.00 5.42 32.09 3.51
766 1009 2.511600 GCGGCAACAGCTCCGTAT 60.512 61.111 12.59 0.00 46.79 3.06
784 1027 2.746277 GCCCGTACAAGCACCAGG 60.746 66.667 0.00 0.00 0.00 4.45
837 1080 1.893062 CGAGGTCATCAGCTCACCA 59.107 57.895 0.00 0.00 46.03 4.17
839 1082 1.875813 CGCGAGGTCATCAGCTCAC 60.876 63.158 0.00 0.00 46.03 3.51
843 1086 2.951745 CGACGCGAGGTCATCAGC 60.952 66.667 15.93 0.00 46.42 4.26
1066 1311 0.331278 TCGGCATTCCCCATTTCTGT 59.669 50.000 0.00 0.00 0.00 3.41
1068 1313 0.106519 CCTCGGCATTCCCCATTTCT 60.107 55.000 0.00 0.00 0.00 2.52
1331 1588 1.531739 GGATAGAGCGAGCCAGGGAG 61.532 65.000 0.00 0.00 0.00 4.30
1332 1589 1.531840 GGATAGAGCGAGCCAGGGA 60.532 63.158 0.00 0.00 0.00 4.20
1333 1590 1.531739 GAGGATAGAGCGAGCCAGGG 61.532 65.000 0.00 0.00 0.00 4.45
1334 1591 0.539438 AGAGGATAGAGCGAGCCAGG 60.539 60.000 0.00 0.00 0.00 4.45
1375 1632 1.722011 ACTCATACCGCGTTGGAAAG 58.278 50.000 4.92 0.00 42.00 2.62
1388 1645 1.271379 ACACTTCGGCGACAACTCATA 59.729 47.619 10.16 0.00 0.00 2.15
1390 1647 0.669619 TACACTTCGGCGACAACTCA 59.330 50.000 10.16 0.00 0.00 3.41
1391 1648 1.654105 CATACACTTCGGCGACAACTC 59.346 52.381 10.16 0.00 0.00 3.01
1392 1649 1.710013 CATACACTTCGGCGACAACT 58.290 50.000 10.16 0.00 0.00 3.16
1398 1655 0.249073 AGCTAGCATACACTTCGGCG 60.249 55.000 18.83 0.00 0.00 6.46
1423 1680 2.682856 GGCATTCTGCGAGGAATTACAA 59.317 45.455 0.00 0.00 46.21 2.41
1520 1780 3.690139 TCCTGACTTCTAGTCTGCTAACG 59.310 47.826 8.18 0.00 45.27 3.18
1569 1829 6.777213 ATATAGACTTTGACCCTATAGCCG 57.223 41.667 0.00 0.00 31.34 5.52
1591 1852 7.880265 ACTCTGAAGCTTTCCCCTATATAAT 57.120 36.000 0.00 0.00 0.00 1.28
1597 1858 3.248024 TGAACTCTGAAGCTTTCCCCTA 58.752 45.455 0.00 0.00 0.00 3.53
1641 1903 3.412386 ACTTTGGCTAAGTGGCTAACAG 58.588 45.455 13.46 0.00 45.33 3.16
1642 1904 3.502123 ACTTTGGCTAAGTGGCTAACA 57.498 42.857 13.46 0.00 45.33 2.41
1643 1905 4.160736 CAACTTTGGCTAAGTGGCTAAC 57.839 45.455 14.85 0.00 46.34 2.34
1744 2113 3.551082 CGTCATTTCAAAAAGCAACAGCA 59.449 39.130 0.00 0.00 0.00 4.41
1802 2172 2.127232 GTGGCCACCAAGCAACACT 61.127 57.895 26.31 0.00 36.64 3.55
1815 2185 7.454225 ACAAGAGATTCTATATTAAGGTGGCC 58.546 38.462 0.00 0.00 0.00 5.36
1902 2282 2.077687 AAAGCATAATCCCAGCCAGG 57.922 50.000 0.00 0.00 37.03 4.45
1970 2357 1.815003 CAAAGGGAAGCCACTCACATC 59.185 52.381 0.00 0.00 0.00 3.06
2091 2479 9.612620 AAGAAAATGCTAACTGAATTAACGAAG 57.387 29.630 0.00 0.00 0.00 3.79
2391 2781 3.006247 AGTAAGCAAGCTAGCAAGAAGC 58.994 45.455 18.83 12.56 46.19 3.86
2586 2992 9.421399 AGGGGTATTTGGATTTTAAGTAATGAG 57.579 33.333 0.00 0.00 0.00 2.90
2693 5320 5.580691 TCAGTTGATCATGACCGAAACATAC 59.419 40.000 0.00 0.00 0.00 2.39
2816 5443 6.468319 CGTCTACTACAAATACCTCACTTTCG 59.532 42.308 0.00 0.00 0.00 3.46
2975 5602 7.899178 AGTTTTCCTGGTTTACAACAAAAAG 57.101 32.000 0.00 0.00 0.00 2.27
3098 5726 7.093322 ACATATTTTCTGATGCAAGGACTTC 57.907 36.000 0.00 0.00 0.00 3.01
3099 5727 7.472334 AACATATTTTCTGATGCAAGGACTT 57.528 32.000 0.00 0.00 0.00 3.01
3100 5728 7.472334 AAACATATTTTCTGATGCAAGGACT 57.528 32.000 0.00 0.00 0.00 3.85
3148 5778 3.494749 CGTCCAGAGTAGTACCTAGGAGG 60.495 56.522 17.98 7.72 42.49 4.30
3150 5780 3.110705 ACGTCCAGAGTAGTACCTAGGA 58.889 50.000 17.98 0.00 0.00 2.94
3151 5781 3.557228 ACGTCCAGAGTAGTACCTAGG 57.443 52.381 7.41 7.41 0.00 3.02
3152 5782 5.669477 ACTTACGTCCAGAGTAGTACCTAG 58.331 45.833 0.00 0.00 0.00 3.02
3161 5791 6.714356 GGGAGTAATATACTTACGTCCAGAGT 59.286 42.308 0.00 0.00 39.59 3.24
3187 5817 9.524106 CTAAAAGGGCTTATATTTAAAAACGGG 57.476 33.333 0.00 0.00 0.00 5.28
3203 5833 4.254492 GTGTCGAAATCTCTAAAAGGGCT 58.746 43.478 0.00 0.00 0.00 5.19
3221 5851 2.030185 ACATCCGCATATAGTCCGTGTC 60.030 50.000 0.00 0.00 0.00 3.67
3225 5855 7.172703 TGTCTATATACATCCGCATATAGTCCG 59.827 40.741 7.94 0.00 38.24 4.79
3284 5914 4.514441 AGATTCCAGTACGGACTACATACG 59.486 45.833 0.00 0.00 46.36 3.06
3295 5925 6.210287 AGTCCTTTAAGAGATTCCAGTACG 57.790 41.667 0.00 0.00 0.00 3.67
3299 5929 9.454859 AAATGTAAGTCCTTTAAGAGATTCCAG 57.545 33.333 0.00 0.00 0.00 3.86
3316 5946 5.718607 ACTCCCTCCGTTACTAAATGTAAGT 59.281 40.000 0.00 0.00 41.29 2.24
3321 5951 4.648307 AGGTACTCCCTCCGTTACTAAATG 59.352 45.833 0.00 0.00 40.71 2.32
3328 5958 5.332743 TCTTAAAAGGTACTCCCTCCGTTA 58.667 41.667 0.00 0.00 45.47 3.18
3351 5987 9.620259 GGAACTGGAGATCTATTTTATTTCACT 57.380 33.333 0.00 0.00 0.00 3.41
3359 5995 7.032598 TCCTTTGGAACTGGAGATCTATTTT 57.967 36.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.