Multiple sequence alignment - TraesCS3D01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G281200 chr3D 100.000 2198 0 0 1 2198 389135565 389137762 0.000000e+00 4060.0
1 TraesCS3D01G281200 chr3D 95.296 574 17 9 1 572 389088361 389088926 0.000000e+00 902.0
2 TraesCS3D01G281200 chr3D 92.734 578 33 8 1 572 9359156 9359730 0.000000e+00 826.0
3 TraesCS3D01G281200 chr3D 96.717 396 5 5 1806 2198 31761428 31761818 0.000000e+00 652.0
4 TraesCS3D01G281200 chr3A 90.831 818 51 12 573 1372 510006618 510007429 0.000000e+00 1074.0
5 TraesCS3D01G281200 chr3A 80.253 395 37 20 1403 1791 639145667 639146026 2.160000e-65 259.0
6 TraesCS3D01G281200 chr6D 93.772 578 28 8 1 573 274555602 274555028 0.000000e+00 861.0
7 TraesCS3D01G281200 chr6D 93.588 577 27 9 1 573 274562501 274561931 0.000000e+00 852.0
8 TraesCS3D01G281200 chr6D 88.612 281 22 7 1375 1646 131949138 131949417 1.260000e-87 333.0
9 TraesCS3D01G281200 chr6D 95.050 202 8 2 1585 1785 131949315 131949515 1.270000e-82 316.0
10 TraesCS3D01G281200 chr5D 93.750 576 22 7 1 573 117214472 117215036 0.000000e+00 852.0
11 TraesCS3D01G281200 chr5D 93.565 575 23 7 1 572 117231550 117232113 0.000000e+00 845.0
12 TraesCS3D01G281200 chrUn 93.345 571 28 10 7 572 259689800 259689235 0.000000e+00 835.0
13 TraesCS3D01G281200 chr4D 93.474 567 29 7 4 567 482151134 482150573 0.000000e+00 835.0
14 TraesCS3D01G281200 chr2D 93.068 577 30 9 4 573 307017883 307017310 0.000000e+00 835.0
15 TraesCS3D01G281200 chr2D 96.717 396 6 4 1806 2198 56887016 56887407 0.000000e+00 652.0
16 TraesCS3D01G281200 chr2D 95.278 360 8 7 1842 2198 407986412 407986765 1.470000e-156 562.0
17 TraesCS3D01G281200 chr2D 91.729 133 9 2 1457 1587 523167723 523167591 1.340000e-42 183.0
18 TraesCS3D01G281200 chr3B 88.376 628 38 16 719 1316 506733944 506734566 0.000000e+00 723.0
19 TraesCS3D01G281200 chr3B 90.773 401 19 11 1809 2198 41251171 41250778 8.990000e-144 520.0
20 TraesCS3D01G281200 chr4B 95.272 423 11 1 1376 1798 284630577 284630990 0.000000e+00 662.0
21 TraesCS3D01G281200 chr4B 92.632 190 14 0 1376 1565 644831814 644831625 7.730000e-70 274.0
22 TraesCS3D01G281200 chr4B 90.323 186 15 1 1625 1807 644831625 644831440 7.840000e-60 241.0
23 TraesCS3D01G281200 chr7D 95.960 396 9 4 1806 2198 136395312 136394921 8.560000e-179 636.0
24 TraesCS3D01G281200 chr7D 96.364 385 7 4 1817 2198 454516531 454516911 5.150000e-176 627.0
25 TraesCS3D01G281200 chr7D 90.182 275 16 10 1376 1640 507909081 507909354 4.490000e-92 348.0
26 TraesCS3D01G281200 chr7D 91.943 211 13 2 1585 1791 507909256 507909466 2.130000e-75 292.0
27 TraesCS3D01G281200 chr7D 100.000 42 0 0 1806 1847 454516495 454516536 6.510000e-11 78.7
28 TraesCS3D01G281200 chr4A 90.909 396 22 9 1806 2198 178369384 178369768 8.990000e-144 520.0
29 TraesCS3D01G281200 chr7A 84.272 426 21 20 1804 2198 717742253 717742663 7.410000e-100 374.0
30 TraesCS3D01G281200 chr6A 84.198 424 22 23 1806 2198 61731454 61731863 9.590000e-99 370.0
31 TraesCS3D01G281200 chr2B 90.678 236 16 4 1585 1814 617150510 617150275 2.120000e-80 309.0
32 TraesCS3D01G281200 chr2A 91.111 180 10 4 1585 1759 668525716 668525894 2.820000e-59 239.0
33 TraesCS3D01G281200 chr2A 80.620 258 31 14 1457 1703 668525621 668525870 4.820000e-42 182.0
34 TraesCS3D01G281200 chr1B 77.333 150 24 7 1052 1195 669751534 669751679 1.810000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G281200 chr3D 389135565 389137762 2197 False 4060 4060 100.000 1 2198 1 chr3D.!!$F4 2197
1 TraesCS3D01G281200 chr3D 389088361 389088926 565 False 902 902 95.296 1 572 1 chr3D.!!$F3 571
2 TraesCS3D01G281200 chr3D 9359156 9359730 574 False 826 826 92.734 1 572 1 chr3D.!!$F1 571
3 TraesCS3D01G281200 chr3A 510006618 510007429 811 False 1074 1074 90.831 573 1372 1 chr3A.!!$F1 799
4 TraesCS3D01G281200 chr6D 274555028 274555602 574 True 861 861 93.772 1 573 1 chr6D.!!$R1 572
5 TraesCS3D01G281200 chr6D 274561931 274562501 570 True 852 852 93.588 1 573 1 chr6D.!!$R2 572
6 TraesCS3D01G281200 chr5D 117214472 117215036 564 False 852 852 93.750 1 573 1 chr5D.!!$F1 572
7 TraesCS3D01G281200 chr5D 117231550 117232113 563 False 845 845 93.565 1 572 1 chr5D.!!$F2 571
8 TraesCS3D01G281200 chrUn 259689235 259689800 565 True 835 835 93.345 7 572 1 chrUn.!!$R1 565
9 TraesCS3D01G281200 chr4D 482150573 482151134 561 True 835 835 93.474 4 567 1 chr4D.!!$R1 563
10 TraesCS3D01G281200 chr2D 307017310 307017883 573 True 835 835 93.068 4 573 1 chr2D.!!$R1 569
11 TraesCS3D01G281200 chr3B 506733944 506734566 622 False 723 723 88.376 719 1316 1 chr3B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 962 0.336737 TCTCCTCTGGTTCTCCTCCC 59.663 60.0 0.0 0.0 34.23 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1974 0.032813 CTGGTTGGATTCTGGCCCAT 60.033 55.0 0.0 0.0 31.66 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.510431 GCCCCTCCTTTCCTTTCCCT 61.510 60.000 0.00 0.00 0.00 4.20
132 149 2.456840 CCCTCCCCTCCTCCACTT 59.543 66.667 0.00 0.00 0.00 3.16
171 188 1.600916 GCACCCCTTGGAGACACAC 60.601 63.158 0.00 0.00 42.67 3.82
237 256 4.039973 TCCACCATAATCCACCTCGATAAC 59.960 45.833 0.00 0.00 0.00 1.89
461 482 2.230892 CGTTGTGCTAACGCTTCCA 58.769 52.632 12.46 0.00 36.82 3.53
466 487 4.048504 GTTGTGCTAACGCTTCCATTTTT 58.951 39.130 0.00 0.00 36.97 1.94
517 539 2.549563 CCCTCTCGTTGCTATGCATCAT 60.550 50.000 0.19 0.00 38.76 2.45
573 595 3.622166 ATTACTACGTTCCCCAACAGG 57.378 47.619 0.00 0.00 32.14 4.00
623 645 2.048597 GTCATGGCCGACACGTGA 60.049 61.111 25.01 0.00 35.88 4.35
920 961 1.687996 CCTCTCCTCTGGTTCTCCTCC 60.688 61.905 0.00 0.00 34.23 4.30
921 962 0.336737 TCTCCTCTGGTTCTCCTCCC 59.663 60.000 0.00 0.00 34.23 4.30
959 1022 5.188359 ACAAGCTGCAATATCCAAAATTCCT 59.812 36.000 1.02 0.00 0.00 3.36
1096 1159 1.522668 CACTTGGGCGATGAAGAACA 58.477 50.000 0.00 0.00 0.00 3.18
1152 1215 1.953138 CATCCTCGTCGGCATGAGC 60.953 63.158 0.00 0.00 34.62 4.26
1194 1257 2.685380 CAGCTCCTCTCCCCCGTT 60.685 66.667 0.00 0.00 0.00 4.44
1199 1262 1.687297 CTCCTCTCCCCCGTTTAGCC 61.687 65.000 0.00 0.00 0.00 3.93
1201 1264 2.689771 TCTCCCCCGTTTAGCCCC 60.690 66.667 0.00 0.00 0.00 5.80
1202 1265 4.171103 CTCCCCCGTTTAGCCCCG 62.171 72.222 0.00 0.00 0.00 5.73
1204 1267 4.478371 CCCCCGTTTAGCCCCGTC 62.478 72.222 0.00 0.00 0.00 4.79
1207 1270 4.478371 CCGTTTAGCCCCGTCCCC 62.478 72.222 0.00 0.00 0.00 4.81
1266 1329 9.880157 ATTGATCAATTTTTGTATTTCTCCCTG 57.120 29.630 15.36 0.00 0.00 4.45
1282 1345 8.446599 TTTCTCCCTGAATAATTTCGATTACC 57.553 34.615 0.00 0.00 34.39 2.85
1288 1351 7.284489 CCCTGAATAATTTCGATTACCCTTTGA 59.716 37.037 0.00 0.00 34.39 2.69
1302 1365 5.813513 ACCCTTTGAATTGCTCTGATTTT 57.186 34.783 0.00 0.00 0.00 1.82
1308 1371 3.191162 TGAATTGCTCTGATTTTGGGTCG 59.809 43.478 0.00 0.00 0.00 4.79
1311 1374 1.657751 GCTCTGATTTTGGGTCGCCC 61.658 60.000 7.87 7.87 45.71 6.13
1327 1390 1.153289 CCCTGATTGCCACCGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
1333 1396 0.978146 ATTGCCACCGAGAGCCTACT 60.978 55.000 0.00 0.00 0.00 2.57
1335 1398 1.035932 TGCCACCGAGAGCCTACTAC 61.036 60.000 0.00 0.00 0.00 2.73
1339 1402 2.422519 CCACCGAGAGCCTACTACCTAA 60.423 54.545 0.00 0.00 0.00 2.69
1345 1408 6.781507 ACCGAGAGCCTACTACCTAATTTATT 59.218 38.462 0.00 0.00 0.00 1.40
1348 1411 7.116519 CGAGAGCCTACTACCTAATTTATTTGC 59.883 40.741 0.00 0.00 0.00 3.68
1353 1416 8.290325 GCCTACTACCTAATTTATTTGCATGAC 58.710 37.037 0.00 0.00 0.00 3.06
1354 1417 9.561069 CCTACTACCTAATTTATTTGCATGACT 57.439 33.333 0.00 0.00 0.00 3.41
1380 1443 2.568127 GCTAAGAGCTGTACGACGC 58.432 57.895 0.00 0.00 38.45 5.19
1381 1444 1.194896 GCTAAGAGCTGTACGACGCG 61.195 60.000 3.53 3.53 38.45 6.01
1382 1445 0.096628 CTAAGAGCTGTACGACGCGT 59.903 55.000 13.85 13.85 44.35 6.01
1383 1446 0.518636 TAAGAGCTGTACGACGCGTT 59.481 50.000 15.53 0.00 41.54 4.84
1384 1447 0.318445 AAGAGCTGTACGACGCGTTT 60.318 50.000 15.53 6.34 41.54 3.60
1385 1448 1.002250 AGAGCTGTACGACGCGTTTG 61.002 55.000 15.53 12.46 41.54 2.93
1386 1449 1.941476 GAGCTGTACGACGCGTTTGG 61.941 60.000 15.53 8.91 41.54 3.28
1387 1450 2.305127 GCTGTACGACGCGTTTGGT 61.305 57.895 15.53 14.81 41.54 3.67
1388 1451 1.824272 GCTGTACGACGCGTTTGGTT 61.824 55.000 15.53 0.00 41.54 3.67
1389 1452 0.160182 CTGTACGACGCGTTTGGTTC 59.840 55.000 15.53 10.67 41.54 3.62
1390 1453 0.527169 TGTACGACGCGTTTGGTTCA 60.527 50.000 15.53 13.19 41.54 3.18
1391 1454 0.160182 GTACGACGCGTTTGGTTCAG 59.840 55.000 15.53 0.32 41.54 3.02
1392 1455 0.940519 TACGACGCGTTTGGTTCAGG 60.941 55.000 15.53 0.00 41.54 3.86
1393 1456 2.241880 CGACGCGTTTGGTTCAGGT 61.242 57.895 15.53 0.00 0.00 4.00
1394 1457 1.568025 GACGCGTTTGGTTCAGGTC 59.432 57.895 15.53 0.00 0.00 3.85
1395 1458 1.153329 ACGCGTTTGGTTCAGGTCA 60.153 52.632 5.58 0.00 0.00 4.02
1396 1459 1.157870 ACGCGTTTGGTTCAGGTCAG 61.158 55.000 5.58 0.00 0.00 3.51
1397 1460 1.841663 CGCGTTTGGTTCAGGTCAGG 61.842 60.000 0.00 0.00 0.00 3.86
1398 1461 0.818040 GCGTTTGGTTCAGGTCAGGT 60.818 55.000 0.00 0.00 0.00 4.00
1399 1462 1.541670 GCGTTTGGTTCAGGTCAGGTA 60.542 52.381 0.00 0.00 0.00 3.08
1400 1463 2.841215 CGTTTGGTTCAGGTCAGGTAA 58.159 47.619 0.00 0.00 0.00 2.85
1401 1464 3.408634 CGTTTGGTTCAGGTCAGGTAAT 58.591 45.455 0.00 0.00 0.00 1.89
1402 1465 3.188460 CGTTTGGTTCAGGTCAGGTAATG 59.812 47.826 0.00 0.00 0.00 1.90
1403 1466 4.142038 GTTTGGTTCAGGTCAGGTAATGT 58.858 43.478 0.00 0.00 0.00 2.71
1404 1467 4.447138 TTGGTTCAGGTCAGGTAATGTT 57.553 40.909 0.00 0.00 0.00 2.71
1405 1468 4.447138 TGGTTCAGGTCAGGTAATGTTT 57.553 40.909 0.00 0.00 0.00 2.83
1406 1469 4.798882 TGGTTCAGGTCAGGTAATGTTTT 58.201 39.130 0.00 0.00 0.00 2.43
1407 1470 4.825085 TGGTTCAGGTCAGGTAATGTTTTC 59.175 41.667 0.00 0.00 0.00 2.29
1408 1471 4.825085 GGTTCAGGTCAGGTAATGTTTTCA 59.175 41.667 0.00 0.00 0.00 2.69
1409 1472 5.048713 GGTTCAGGTCAGGTAATGTTTTCAG 60.049 44.000 0.00 0.00 0.00 3.02
1410 1473 5.560722 TCAGGTCAGGTAATGTTTTCAGA 57.439 39.130 0.00 0.00 0.00 3.27
1411 1474 6.126863 TCAGGTCAGGTAATGTTTTCAGAT 57.873 37.500 0.00 0.00 0.00 2.90
1412 1475 6.542821 TCAGGTCAGGTAATGTTTTCAGATT 58.457 36.000 0.00 0.00 0.00 2.40
1413 1476 7.004086 TCAGGTCAGGTAATGTTTTCAGATTT 58.996 34.615 0.00 0.00 0.00 2.17
1414 1477 7.040478 TCAGGTCAGGTAATGTTTTCAGATTTG 60.040 37.037 0.00 0.00 0.00 2.32
1415 1478 6.777580 AGGTCAGGTAATGTTTTCAGATTTGT 59.222 34.615 0.00 0.00 0.00 2.83
1416 1479 7.942341 AGGTCAGGTAATGTTTTCAGATTTGTA 59.058 33.333 0.00 0.00 0.00 2.41
1417 1480 8.573035 GGTCAGGTAATGTTTTCAGATTTGTAA 58.427 33.333 0.00 0.00 0.00 2.41
1431 1494 9.725019 TTCAGATTTGTAATCAGAATACAGTGT 57.275 29.630 0.00 0.00 34.92 3.55
1438 1501 9.542462 TTGTAATCAGAATACAGTGTATTAGGC 57.458 33.333 24.95 14.68 34.92 3.93
1439 1502 8.924303 TGTAATCAGAATACAGTGTATTAGGCT 58.076 33.333 24.95 16.43 0.00 4.58
1440 1503 9.197694 GTAATCAGAATACAGTGTATTAGGCTG 57.802 37.037 24.95 24.52 36.41 4.85
1441 1504 6.791867 TCAGAATACAGTGTATTAGGCTGT 57.208 37.500 26.55 10.53 44.49 4.40
1442 1505 6.573434 TCAGAATACAGTGTATTAGGCTGTG 58.427 40.000 26.55 16.88 42.60 3.66
1443 1506 5.755375 CAGAATACAGTGTATTAGGCTGTGG 59.245 44.000 24.95 6.58 42.60 4.17
1444 1507 5.661312 AGAATACAGTGTATTAGGCTGTGGA 59.339 40.000 24.95 0.00 42.60 4.02
1445 1508 6.327626 AGAATACAGTGTATTAGGCTGTGGAT 59.672 38.462 24.95 2.33 42.60 3.41
1446 1509 4.844349 ACAGTGTATTAGGCTGTGGATT 57.156 40.909 0.00 0.00 41.33 3.01
1447 1510 4.517285 ACAGTGTATTAGGCTGTGGATTG 58.483 43.478 0.00 0.00 41.33 2.67
1448 1511 3.879295 CAGTGTATTAGGCTGTGGATTGG 59.121 47.826 0.00 0.00 0.00 3.16
1449 1512 2.618709 GTGTATTAGGCTGTGGATTGGC 59.381 50.000 0.00 0.00 0.00 4.52
1450 1513 2.509548 TGTATTAGGCTGTGGATTGGCT 59.490 45.455 0.00 0.00 41.91 4.75
1451 1514 2.062971 ATTAGGCTGTGGATTGGCTG 57.937 50.000 0.00 0.00 39.45 4.85
1452 1515 0.991146 TTAGGCTGTGGATTGGCTGA 59.009 50.000 0.00 0.00 39.45 4.26
1453 1516 1.216064 TAGGCTGTGGATTGGCTGAT 58.784 50.000 0.00 0.00 39.45 2.90
1454 1517 0.333993 AGGCTGTGGATTGGCTGATT 59.666 50.000 0.00 0.00 37.69 2.57
1455 1518 1.565759 AGGCTGTGGATTGGCTGATTA 59.434 47.619 0.00 0.00 37.69 1.75
1456 1519 1.678101 GGCTGTGGATTGGCTGATTAC 59.322 52.381 0.00 0.00 0.00 1.89
1457 1520 1.331756 GCTGTGGATTGGCTGATTACG 59.668 52.381 0.00 0.00 0.00 3.18
1458 1521 2.632377 CTGTGGATTGGCTGATTACGT 58.368 47.619 0.00 0.00 0.00 3.57
1459 1522 2.352651 CTGTGGATTGGCTGATTACGTG 59.647 50.000 0.00 0.00 0.00 4.49
1460 1523 2.027653 TGTGGATTGGCTGATTACGTGA 60.028 45.455 0.00 0.00 0.00 4.35
1461 1524 3.206150 GTGGATTGGCTGATTACGTGAT 58.794 45.455 0.00 0.00 0.00 3.06
1462 1525 3.002656 GTGGATTGGCTGATTACGTGATG 59.997 47.826 0.00 0.00 0.00 3.07
1463 1526 2.031682 GGATTGGCTGATTACGTGATGC 60.032 50.000 0.00 0.00 0.00 3.91
1473 1536 4.415490 CGTGATGCGTTTGGTTCG 57.585 55.556 0.00 0.00 35.54 3.95
1474 1537 1.856688 CGTGATGCGTTTGGTTCGA 59.143 52.632 0.00 0.00 35.54 3.71
1475 1538 0.450482 CGTGATGCGTTTGGTTCGAC 60.450 55.000 0.00 0.00 35.54 4.20
1476 1539 0.450482 GTGATGCGTTTGGTTCGACG 60.450 55.000 0.00 0.00 41.89 5.12
1477 1540 0.597898 TGATGCGTTTGGTTCGACGA 60.598 50.000 0.00 0.00 41.53 4.20
1478 1541 0.509499 GATGCGTTTGGTTCGACGAA 59.491 50.000 6.10 6.10 41.53 3.85
1479 1542 0.511221 ATGCGTTTGGTTCGACGAAG 59.489 50.000 11.25 0.00 41.53 3.79
1480 1543 1.203313 GCGTTTGGTTCGACGAAGG 59.797 57.895 11.25 0.00 41.53 3.46
1481 1544 1.857364 CGTTTGGTTCGACGAAGGG 59.143 57.895 11.25 0.00 41.53 3.95
1482 1545 0.877213 CGTTTGGTTCGACGAAGGGT 60.877 55.000 11.25 0.00 41.53 4.34
1483 1546 1.302366 GTTTGGTTCGACGAAGGGTT 58.698 50.000 11.25 0.00 0.00 4.11
1484 1547 1.003223 GTTTGGTTCGACGAAGGGTTG 60.003 52.381 11.25 0.00 0.00 3.77
1485 1548 0.533308 TTGGTTCGACGAAGGGTTGG 60.533 55.000 11.25 0.00 0.00 3.77
1486 1549 1.070275 GGTTCGACGAAGGGTTGGT 59.930 57.895 11.25 0.00 0.00 3.67
1487 1550 0.533531 GGTTCGACGAAGGGTTGGTT 60.534 55.000 11.25 0.00 0.00 3.67
1488 1551 1.302366 GTTCGACGAAGGGTTGGTTT 58.698 50.000 11.25 0.00 0.00 3.27
1489 1552 1.262417 GTTCGACGAAGGGTTGGTTTC 59.738 52.381 11.25 0.00 0.00 2.78
1490 1553 0.249996 TCGACGAAGGGTTGGTTTCC 60.250 55.000 0.00 0.00 0.00 3.13
1491 1554 1.232621 CGACGAAGGGTTGGTTTCCC 61.233 60.000 0.00 0.00 44.90 3.97
1492 1555 0.179012 GACGAAGGGTTGGTTTCCCA 60.179 55.000 3.79 0.00 46.82 4.37
1503 1566 2.715536 GTTTCCCAAACCAGAGCGT 58.284 52.632 0.00 0.00 35.35 5.07
1504 1567 1.029681 GTTTCCCAAACCAGAGCGTT 58.970 50.000 0.00 0.00 35.35 4.84
1505 1568 2.223745 GTTTCCCAAACCAGAGCGTTA 58.776 47.619 0.00 0.00 35.35 3.18
1506 1569 2.178912 TTCCCAAACCAGAGCGTTAG 57.821 50.000 0.00 0.00 0.00 2.34
1507 1570 1.344065 TCCCAAACCAGAGCGTTAGA 58.656 50.000 0.00 0.00 0.00 2.10
1508 1571 1.695242 TCCCAAACCAGAGCGTTAGAA 59.305 47.619 0.00 0.00 0.00 2.10
1509 1572 2.105134 TCCCAAACCAGAGCGTTAGAAA 59.895 45.455 0.00 0.00 0.00 2.52
1510 1573 2.882137 CCCAAACCAGAGCGTTAGAAAA 59.118 45.455 0.00 0.00 0.00 2.29
1511 1574 3.058224 CCCAAACCAGAGCGTTAGAAAAG 60.058 47.826 0.00 0.00 0.00 2.27
1512 1575 3.813166 CCAAACCAGAGCGTTAGAAAAGA 59.187 43.478 0.00 0.00 0.00 2.52
1513 1576 4.274950 CCAAACCAGAGCGTTAGAAAAGAA 59.725 41.667 0.00 0.00 0.00 2.52
1514 1577 5.444122 CAAACCAGAGCGTTAGAAAAGAAG 58.556 41.667 0.00 0.00 0.00 2.85
1515 1578 4.338379 ACCAGAGCGTTAGAAAAGAAGT 57.662 40.909 0.00 0.00 0.00 3.01
1516 1579 4.058817 ACCAGAGCGTTAGAAAAGAAGTG 58.941 43.478 0.00 0.00 0.00 3.16
1517 1580 4.202223 ACCAGAGCGTTAGAAAAGAAGTGA 60.202 41.667 0.00 0.00 0.00 3.41
1518 1581 4.387256 CCAGAGCGTTAGAAAAGAAGTGAG 59.613 45.833 0.00 0.00 0.00 3.51
1519 1582 4.387256 CAGAGCGTTAGAAAAGAAGTGAGG 59.613 45.833 0.00 0.00 0.00 3.86
1520 1583 4.281182 AGAGCGTTAGAAAAGAAGTGAGGA 59.719 41.667 0.00 0.00 0.00 3.71
1521 1584 4.561105 AGCGTTAGAAAAGAAGTGAGGAG 58.439 43.478 0.00 0.00 0.00 3.69
1522 1585 4.281182 AGCGTTAGAAAAGAAGTGAGGAGA 59.719 41.667 0.00 0.00 0.00 3.71
1523 1586 4.989168 GCGTTAGAAAAGAAGTGAGGAGAA 59.011 41.667 0.00 0.00 0.00 2.87
1524 1587 5.119434 GCGTTAGAAAAGAAGTGAGGAGAAG 59.881 44.000 0.00 0.00 0.00 2.85
1525 1588 5.635700 CGTTAGAAAAGAAGTGAGGAGAAGG 59.364 44.000 0.00 0.00 0.00 3.46
1526 1589 4.632327 AGAAAAGAAGTGAGGAGAAGGG 57.368 45.455 0.00 0.00 0.00 3.95
1527 1590 4.235372 AGAAAAGAAGTGAGGAGAAGGGA 58.765 43.478 0.00 0.00 0.00 4.20
1528 1591 4.285775 AGAAAAGAAGTGAGGAGAAGGGAG 59.714 45.833 0.00 0.00 0.00 4.30
1529 1592 3.551635 AAGAAGTGAGGAGAAGGGAGA 57.448 47.619 0.00 0.00 0.00 3.71
1530 1593 3.100207 AGAAGTGAGGAGAAGGGAGAG 57.900 52.381 0.00 0.00 0.00 3.20
1531 1594 2.107366 GAAGTGAGGAGAAGGGAGAGG 58.893 57.143 0.00 0.00 0.00 3.69
1532 1595 0.325203 AGTGAGGAGAAGGGAGAGGC 60.325 60.000 0.00 0.00 0.00 4.70
1533 1596 0.325203 GTGAGGAGAAGGGAGAGGCT 60.325 60.000 0.00 0.00 0.00 4.58
1534 1597 0.032615 TGAGGAGAAGGGAGAGGCTC 60.033 60.000 6.34 6.34 0.00 4.70
1535 1598 1.076339 AGGAGAAGGGAGAGGCTCG 60.076 63.158 9.22 0.00 0.00 5.03
1536 1599 2.131067 GGAGAAGGGAGAGGCTCGG 61.131 68.421 9.22 0.00 0.00 4.63
1537 1600 2.762043 AGAAGGGAGAGGCTCGGC 60.762 66.667 9.22 5.35 0.00 5.54
1557 1620 4.824166 GCATGCCTGCTTGCGACG 62.824 66.667 6.36 0.00 45.32 5.12
1558 1621 3.120385 CATGCCTGCTTGCGACGA 61.120 61.111 0.00 0.00 0.00 4.20
1559 1622 2.358615 ATGCCTGCTTGCGACGAA 60.359 55.556 0.00 0.00 0.00 3.85
1560 1623 2.393768 ATGCCTGCTTGCGACGAAG 61.394 57.895 0.00 0.71 0.00 3.79
1561 1624 2.738521 GCCTGCTTGCGACGAAGA 60.739 61.111 0.00 0.00 0.00 2.87
1562 1625 2.317609 GCCTGCTTGCGACGAAGAA 61.318 57.895 0.00 0.00 0.00 2.52
1563 1626 1.784062 CCTGCTTGCGACGAAGAAG 59.216 57.895 0.00 3.65 0.00 2.85
1564 1627 1.630244 CCTGCTTGCGACGAAGAAGG 61.630 60.000 15.39 15.39 41.59 3.46
1565 1628 1.630244 CTGCTTGCGACGAAGAAGGG 61.630 60.000 0.00 0.00 0.00 3.95
1566 1629 2.391389 GCTTGCGACGAAGAAGGGG 61.391 63.158 0.00 0.00 0.00 4.79
1567 1630 1.292223 CTTGCGACGAAGAAGGGGA 59.708 57.895 0.00 0.00 0.00 4.81
1568 1631 0.108138 CTTGCGACGAAGAAGGGGAT 60.108 55.000 0.00 0.00 0.00 3.85
1569 1632 0.391130 TTGCGACGAAGAAGGGGATG 60.391 55.000 0.00 0.00 0.00 3.51
1570 1633 1.218316 GCGACGAAGAAGGGGATGT 59.782 57.895 0.00 0.00 0.00 3.06
1571 1634 0.806492 GCGACGAAGAAGGGGATGTC 60.806 60.000 0.00 0.00 0.00 3.06
1572 1635 0.179108 CGACGAAGAAGGGGATGTCC 60.179 60.000 0.00 0.00 0.00 4.02
1573 1636 0.179108 GACGAAGAAGGGGATGTCCG 60.179 60.000 0.00 0.00 36.71 4.79
1574 1637 1.144057 CGAAGAAGGGGATGTCCGG 59.856 63.158 0.00 0.00 36.71 5.14
1575 1638 1.153147 GAAGAAGGGGATGTCCGGC 60.153 63.158 0.00 0.00 36.71 6.13
1576 1639 1.910580 GAAGAAGGGGATGTCCGGCA 61.911 60.000 0.00 0.00 36.71 5.69
1577 1640 1.497309 AAGAAGGGGATGTCCGGCAA 61.497 55.000 0.00 0.00 36.71 4.52
1578 1641 1.452108 GAAGGGGATGTCCGGCAAG 60.452 63.158 0.00 0.00 36.71 4.01
1579 1642 2.893682 GAAGGGGATGTCCGGCAAGG 62.894 65.000 0.00 0.00 42.97 3.61
1580 1643 4.506255 GGGGATGTCCGGCAAGGG 62.506 72.222 0.00 0.00 41.52 3.95
1581 1644 4.506255 GGGATGTCCGGCAAGGGG 62.506 72.222 0.00 0.00 41.52 4.79
1582 1645 4.506255 GGATGTCCGGCAAGGGGG 62.506 72.222 0.00 0.00 41.52 5.40
1592 1655 4.697756 CAAGGGGGCTGCGACGAA 62.698 66.667 0.00 0.00 0.00 3.85
1593 1656 4.394712 AAGGGGGCTGCGACGAAG 62.395 66.667 0.00 0.00 0.00 3.79
1595 1658 4.388499 GGGGGCTGCGACGAAGAA 62.388 66.667 7.14 0.00 0.00 2.52
1596 1659 2.815647 GGGGCTGCGACGAAGAAG 60.816 66.667 7.14 0.00 0.00 2.85
1597 1660 2.815647 GGGCTGCGACGAAGAAGG 60.816 66.667 7.14 0.00 0.00 3.46
1598 1661 2.815647 GGCTGCGACGAAGAAGGG 60.816 66.667 7.14 0.00 0.00 3.95
1599 1662 2.815647 GCTGCGACGAAGAAGGGG 60.816 66.667 7.14 0.00 0.00 4.79
1600 1663 2.970639 CTGCGACGAAGAAGGGGA 59.029 61.111 0.00 0.00 0.00 4.81
1601 1664 1.292223 CTGCGACGAAGAAGGGGAA 59.708 57.895 0.00 0.00 0.00 3.97
1602 1665 0.737715 CTGCGACGAAGAAGGGGAAG 60.738 60.000 0.00 0.00 0.00 3.46
1603 1666 1.292541 GCGACGAAGAAGGGGAAGT 59.707 57.895 0.00 0.00 0.00 3.01
1604 1667 0.736672 GCGACGAAGAAGGGGAAGTC 60.737 60.000 0.00 0.00 0.00 3.01
1605 1668 0.108756 CGACGAAGAAGGGGAAGTCC 60.109 60.000 0.00 0.00 0.00 3.85
1606 1669 0.108756 GACGAAGAAGGGGAAGTCCG 60.109 60.000 0.00 0.00 36.71 4.79
1607 1670 1.218316 CGAAGAAGGGGAAGTCCGG 59.782 63.158 0.00 0.00 36.71 5.14
1608 1671 1.078356 GAAGAAGGGGAAGTCCGGC 60.078 63.158 0.00 0.00 36.71 6.13
1609 1672 1.838073 GAAGAAGGGGAAGTCCGGCA 61.838 60.000 0.00 0.00 36.71 5.69
1610 1673 1.423794 AAGAAGGGGAAGTCCGGCAA 61.424 55.000 0.00 0.00 36.71 4.52
1611 1674 1.377333 GAAGGGGAAGTCCGGCAAG 60.377 63.158 0.00 0.00 36.71 4.01
1612 1675 2.821679 GAAGGGGAAGTCCGGCAAGG 62.822 65.000 0.00 0.00 42.97 3.61
1613 1676 4.426313 GGGGAAGTCCGGCAAGGG 62.426 72.222 0.00 0.00 41.52 3.95
1614 1677 4.426313 GGGAAGTCCGGCAAGGGG 62.426 72.222 0.00 0.00 41.52 4.79
1615 1678 4.426313 GGAAGTCCGGCAAGGGGG 62.426 72.222 0.00 0.00 41.52 5.40
1640 1703 3.227276 CGACGGGGATGGGGAGAG 61.227 72.222 0.00 0.00 0.00 3.20
1641 1704 3.551407 GACGGGGATGGGGAGAGC 61.551 72.222 0.00 0.00 0.00 4.09
1642 1705 4.095400 ACGGGGATGGGGAGAGCT 62.095 66.667 0.00 0.00 0.00 4.09
1643 1706 3.237741 CGGGGATGGGGAGAGCTC 61.238 72.222 5.27 5.27 0.00 4.09
1652 1715 4.527583 GGAGAGCTCCGCTGCCAG 62.528 72.222 10.93 0.00 39.88 4.85
1668 1731 4.803426 AGCGTGGCTGCTAGCGAC 62.803 66.667 10.77 7.86 45.14 5.19
1671 1734 4.129737 GTGGCTGCTAGCGACGGA 62.130 66.667 10.77 0.00 43.62 4.69
1672 1735 3.826754 TGGCTGCTAGCGACGGAG 61.827 66.667 10.77 2.17 43.62 4.63
1673 1736 3.518998 GGCTGCTAGCGACGGAGA 61.519 66.667 10.77 0.00 43.62 3.71
1674 1737 2.490217 GCTGCTAGCGACGGAGAA 59.510 61.111 10.77 0.00 0.00 2.87
1675 1738 1.587613 GCTGCTAGCGACGGAGAAG 60.588 63.158 10.77 0.00 0.00 2.85
1676 1739 1.064946 CTGCTAGCGACGGAGAAGG 59.935 63.158 10.77 0.00 0.00 3.46
1677 1740 2.343163 CTGCTAGCGACGGAGAAGGG 62.343 65.000 10.77 0.00 0.00 3.95
1678 1741 3.121019 CTAGCGACGGAGAAGGGG 58.879 66.667 0.00 0.00 0.00 4.79
1679 1742 2.441532 TAGCGACGGAGAAGGGGG 60.442 66.667 0.00 0.00 0.00 5.40
1680 1743 2.905935 CTAGCGACGGAGAAGGGGGA 62.906 65.000 0.00 0.00 0.00 4.81
1681 1744 2.905935 TAGCGACGGAGAAGGGGGAG 62.906 65.000 0.00 0.00 0.00 4.30
1682 1745 2.044252 CGACGGAGAAGGGGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
1683 1746 1.455959 CGACGGAGAAGGGGGAGAT 60.456 63.158 0.00 0.00 0.00 2.75
1684 1747 1.457009 CGACGGAGAAGGGGGAGATC 61.457 65.000 0.00 0.00 0.00 2.75
1685 1748 1.075151 ACGGAGAAGGGGGAGATCC 60.075 63.158 0.00 0.00 0.00 3.36
1686 1749 2.203771 CGGAGAAGGGGGAGATCCG 61.204 68.421 0.00 0.00 45.95 4.18
1687 1750 1.839296 GGAGAAGGGGGAGATCCGG 60.839 68.421 0.00 0.00 36.71 5.14
1688 1751 2.446802 AGAAGGGGGAGATCCGGC 60.447 66.667 0.00 0.00 36.71 6.13
1689 1752 2.446802 GAAGGGGGAGATCCGGCT 60.447 66.667 0.00 0.00 36.71 5.52
1690 1753 1.152312 GAAGGGGGAGATCCGGCTA 60.152 63.158 0.00 0.00 36.71 3.93
1691 1754 1.152226 AAGGGGGAGATCCGGCTAG 60.152 63.158 0.00 0.00 36.71 3.42
1692 1755 1.665948 AAGGGGGAGATCCGGCTAGA 61.666 60.000 0.00 0.00 36.71 2.43
1693 1756 1.608046 GGGGGAGATCCGGCTAGAG 60.608 68.421 0.00 0.00 36.71 2.43
1694 1757 2.279810 GGGGAGATCCGGCTAGAGC 61.280 68.421 0.00 0.00 41.14 4.09
1695 1758 1.228737 GGGAGATCCGGCTAGAGCT 60.229 63.158 0.00 0.00 41.70 4.09
1696 1759 1.531739 GGGAGATCCGGCTAGAGCTG 61.532 65.000 0.00 3.18 46.63 4.24
1697 1760 0.825840 GGAGATCCGGCTAGAGCTGT 60.826 60.000 9.44 0.00 45.66 4.40
1698 1761 1.036707 GAGATCCGGCTAGAGCTGTT 58.963 55.000 9.44 0.00 45.66 3.16
1699 1762 0.749649 AGATCCGGCTAGAGCTGTTG 59.250 55.000 9.44 0.00 45.66 3.33
1700 1763 0.878086 GATCCGGCTAGAGCTGTTGC 60.878 60.000 8.79 8.79 45.66 4.17
1710 1773 2.774774 GCTGTTGCTCGCGAGAAG 59.225 61.111 38.74 26.87 41.32 2.85
1711 1774 2.734673 GCTGTTGCTCGCGAGAAGG 61.735 63.158 38.74 22.03 41.32 3.46
1712 1775 1.080501 CTGTTGCTCGCGAGAAGGA 60.081 57.895 38.74 17.80 41.32 3.36
1713 1776 1.075425 CTGTTGCTCGCGAGAAGGAG 61.075 60.000 38.74 22.89 41.32 3.69
1714 1777 1.807573 GTTGCTCGCGAGAAGGAGG 60.808 63.158 38.74 12.83 41.32 4.30
1715 1778 3.649277 TTGCTCGCGAGAAGGAGGC 62.649 63.158 38.74 22.68 41.32 4.70
1716 1779 4.882396 GCTCGCGAGAAGGAGGCC 62.882 72.222 38.74 15.08 41.32 5.19
1717 1780 4.214327 CTCGCGAGAAGGAGGCCC 62.214 72.222 32.06 0.00 41.32 5.80
1740 1803 4.695231 GCGCTGCTGCTTGTGGTG 62.695 66.667 14.03 0.00 36.97 4.17
1741 1804 4.034258 CGCTGCTGCTTGTGGTGG 62.034 66.667 14.03 0.00 36.97 4.61
1742 1805 3.677648 GCTGCTGCTTGTGGTGGG 61.678 66.667 8.53 0.00 36.03 4.61
1743 1806 2.987547 CTGCTGCTTGTGGTGGGG 60.988 66.667 0.00 0.00 0.00 4.96
1744 1807 3.496309 CTGCTGCTTGTGGTGGGGA 62.496 63.158 0.00 0.00 0.00 4.81
1745 1808 2.036256 GCTGCTTGTGGTGGGGAT 59.964 61.111 0.00 0.00 0.00 3.85
1746 1809 2.345760 GCTGCTTGTGGTGGGGATG 61.346 63.158 0.00 0.00 0.00 3.51
1747 1810 1.679977 CTGCTTGTGGTGGGGATGG 60.680 63.158 0.00 0.00 0.00 3.51
1748 1811 2.362889 GCTTGTGGTGGGGATGGG 60.363 66.667 0.00 0.00 0.00 4.00
1749 1812 2.360191 CTTGTGGTGGGGATGGGG 59.640 66.667 0.00 0.00 0.00 4.96
1750 1813 3.272042 TTGTGGTGGGGATGGGGG 61.272 66.667 0.00 0.00 0.00 5.40
1751 1814 3.838721 TTGTGGTGGGGATGGGGGA 62.839 63.158 0.00 0.00 0.00 4.81
1752 1815 2.699938 GTGGTGGGGATGGGGGAT 60.700 66.667 0.00 0.00 0.00 3.85
1753 1816 2.699554 TGGTGGGGATGGGGGATG 60.700 66.667 0.00 0.00 0.00 3.51
1754 1817 2.699938 GGTGGGGATGGGGGATGT 60.700 66.667 0.00 0.00 0.00 3.06
1755 1818 2.324560 GGTGGGGATGGGGGATGTT 61.325 63.158 0.00 0.00 0.00 2.71
1756 1819 1.230212 GTGGGGATGGGGGATGTTC 59.770 63.158 0.00 0.00 0.00 3.18
1757 1820 2.382770 TGGGGATGGGGGATGTTCG 61.383 63.158 0.00 0.00 0.00 3.95
1758 1821 2.515901 GGGATGGGGGATGTTCGG 59.484 66.667 0.00 0.00 0.00 4.30
1759 1822 2.203351 GGATGGGGGATGTTCGGC 60.203 66.667 0.00 0.00 0.00 5.54
1760 1823 2.203351 GATGGGGGATGTTCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
1761 1824 4.189580 ATGGGGGATGTTCGGCCG 62.190 66.667 22.12 22.12 0.00 6.13
1799 1862 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1801 1864 4.825679 GGGGAGGGGAGGGGAGTG 62.826 77.778 0.00 0.00 0.00 3.51
1802 1865 4.825679 GGGAGGGGAGGGGAGTGG 62.826 77.778 0.00 0.00 0.00 4.00
1803 1866 4.825679 GGAGGGGAGGGGAGTGGG 62.826 77.778 0.00 0.00 0.00 4.61
1804 1867 4.825679 GAGGGGAGGGGAGTGGGG 62.826 77.778 0.00 0.00 0.00 4.96
1819 1882 4.565850 GGGGGATCCGGCTCCTCT 62.566 72.222 23.25 0.00 35.95 3.69
1820 1883 2.526628 GGGGATCCGGCTCCTCTA 59.473 66.667 23.14 0.00 32.57 2.43
1821 1884 1.909287 GGGGATCCGGCTCCTCTAC 60.909 68.421 23.14 7.01 32.57 2.59
1822 1885 1.909287 GGGATCCGGCTCCTCTACC 60.909 68.421 23.14 3.06 35.50 3.18
1827 1890 4.208686 CGGCTCCTCTACCGTGCC 62.209 72.222 0.00 0.00 44.46 5.01
1828 1891 3.851128 GGCTCCTCTACCGTGCCC 61.851 72.222 0.00 0.00 37.81 5.36
1829 1892 3.075005 GCTCCTCTACCGTGCCCA 61.075 66.667 0.00 0.00 0.00 5.36
1830 1893 2.656069 GCTCCTCTACCGTGCCCAA 61.656 63.158 0.00 0.00 0.00 4.12
1831 1894 1.218316 CTCCTCTACCGTGCCCAAC 59.782 63.158 0.00 0.00 0.00 3.77
1849 1912 4.065281 GGCACGGTACTCTGCGGT 62.065 66.667 8.58 0.00 33.94 5.68
1850 1913 2.809601 GCACGGTACTCTGCGGTG 60.810 66.667 0.00 0.00 39.27 4.94
1851 1914 2.809601 CACGGTACTCTGCGGTGC 60.810 66.667 0.00 0.00 32.15 5.01
1852 1915 4.065281 ACGGTACTCTGCGGTGCC 62.065 66.667 0.00 0.00 38.36 5.01
1853 1916 3.760035 CGGTACTCTGCGGTGCCT 61.760 66.667 8.99 0.00 39.33 4.75
1854 1917 2.663196 GGTACTCTGCGGTGCCTT 59.337 61.111 0.00 0.00 38.61 4.35
1855 1918 1.448013 GGTACTCTGCGGTGCCTTC 60.448 63.158 0.00 0.00 38.61 3.46
1856 1919 1.592223 GTACTCTGCGGTGCCTTCT 59.408 57.895 0.00 0.00 0.00 2.85
1857 1920 0.037232 GTACTCTGCGGTGCCTTCTT 60.037 55.000 0.00 0.00 0.00 2.52
1858 1921 0.246635 TACTCTGCGGTGCCTTCTTC 59.753 55.000 0.00 0.00 0.00 2.87
1859 1922 1.743252 CTCTGCGGTGCCTTCTTCC 60.743 63.158 0.00 0.00 0.00 3.46
1860 1923 2.177594 CTCTGCGGTGCCTTCTTCCT 62.178 60.000 0.00 0.00 0.00 3.36
1861 1924 0.902984 TCTGCGGTGCCTTCTTCCTA 60.903 55.000 0.00 0.00 0.00 2.94
1862 1925 0.741221 CTGCGGTGCCTTCTTCCTAC 60.741 60.000 0.00 0.00 0.00 3.18
1863 1926 1.449778 GCGGTGCCTTCTTCCTACC 60.450 63.158 0.00 0.00 0.00 3.18
1864 1927 1.221021 CGGTGCCTTCTTCCTACCC 59.779 63.158 0.00 0.00 0.00 3.69
1865 1928 1.550130 CGGTGCCTTCTTCCTACCCA 61.550 60.000 0.00 0.00 0.00 4.51
1866 1929 0.253327 GGTGCCTTCTTCCTACCCAG 59.747 60.000 0.00 0.00 0.00 4.45
1867 1930 0.253327 GTGCCTTCTTCCTACCCAGG 59.747 60.000 0.00 0.00 44.17 4.45
1868 1931 0.914417 TGCCTTCTTCCTACCCAGGG 60.914 60.000 2.85 2.85 42.87 4.45
1869 1932 1.636769 GCCTTCTTCCTACCCAGGGG 61.637 65.000 11.37 6.87 42.87 4.79
1880 1943 3.319198 CCAGGGGTACGCACTGGT 61.319 66.667 26.00 2.11 45.21 4.00
1881 1944 1.985662 CCAGGGGTACGCACTGGTA 60.986 63.158 26.00 0.00 45.21 3.25
1882 1945 1.335132 CCAGGGGTACGCACTGGTAT 61.335 60.000 26.00 0.43 45.21 2.73
1883 1946 1.405872 CAGGGGTACGCACTGGTATA 58.594 55.000 12.45 0.00 46.88 1.47
1884 1947 1.340248 CAGGGGTACGCACTGGTATAG 59.660 57.143 12.45 0.00 46.88 1.31
1885 1948 0.677842 GGGGTACGCACTGGTATAGG 59.322 60.000 12.45 0.00 42.57 2.57
1886 1949 0.033090 GGGTACGCACTGGTATAGGC 59.967 60.000 4.83 0.00 0.00 3.93
1887 1950 0.033090 GGTACGCACTGGTATAGGCC 59.967 60.000 0.00 0.00 0.00 5.19
1888 1951 0.748450 GTACGCACTGGTATAGGCCA 59.252 55.000 5.01 0.00 36.97 5.36
1898 1961 4.435977 TGGTATAGGCCAGAATATCCCT 57.564 45.455 5.01 0.00 33.97 4.20
1899 1962 5.562080 TGGTATAGGCCAGAATATCCCTA 57.438 43.478 5.01 0.00 34.68 3.53
1900 1963 5.922715 TGGTATAGGCCAGAATATCCCTAA 58.077 41.667 5.01 0.00 33.94 2.69
1901 1964 6.335934 TGGTATAGGCCAGAATATCCCTAAA 58.664 40.000 5.01 0.00 33.94 1.85
1902 1965 6.795507 TGGTATAGGCCAGAATATCCCTAAAA 59.204 38.462 5.01 0.00 33.94 1.52
1903 1966 7.296150 TGGTATAGGCCAGAATATCCCTAAAAA 59.704 37.037 5.01 0.00 33.94 1.94
1925 1988 4.541250 AAAAGATATGGGCCAGAATCCA 57.459 40.909 21.80 0.00 37.46 3.41
1926 1989 4.541250 AAAGATATGGGCCAGAATCCAA 57.459 40.909 21.80 0.31 36.54 3.53
1927 1990 3.515602 AGATATGGGCCAGAATCCAAC 57.484 47.619 21.80 4.60 36.54 3.77
1928 1991 2.108952 AGATATGGGCCAGAATCCAACC 59.891 50.000 21.80 4.30 36.54 3.77
1929 1992 1.303898 TATGGGCCAGAATCCAACCA 58.696 50.000 13.78 0.00 36.54 3.67
1930 1993 0.032813 ATGGGCCAGAATCCAACCAG 60.033 55.000 13.78 0.00 36.54 4.00
1931 1994 2.054453 GGGCCAGAATCCAACCAGC 61.054 63.158 4.39 0.00 0.00 4.85
1932 1995 2.054453 GGCCAGAATCCAACCAGCC 61.054 63.158 0.00 0.00 0.00 4.85
1933 1996 1.000396 GCCAGAATCCAACCAGCCT 60.000 57.895 0.00 0.00 0.00 4.58
1934 1997 0.255890 GCCAGAATCCAACCAGCCTA 59.744 55.000 0.00 0.00 0.00 3.93
1935 1998 1.133668 GCCAGAATCCAACCAGCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
1936 1999 2.856222 CCAGAATCCAACCAGCCTATC 58.144 52.381 0.00 0.00 0.00 2.08
1937 2000 2.173356 CCAGAATCCAACCAGCCTATCA 59.827 50.000 0.00 0.00 0.00 2.15
1938 2001 3.371917 CCAGAATCCAACCAGCCTATCAA 60.372 47.826 0.00 0.00 0.00 2.57
1939 2002 4.272489 CAGAATCCAACCAGCCTATCAAA 58.728 43.478 0.00 0.00 0.00 2.69
1940 2003 4.891756 CAGAATCCAACCAGCCTATCAAAT 59.108 41.667 0.00 0.00 0.00 2.32
1941 2004 5.009410 CAGAATCCAACCAGCCTATCAAATC 59.991 44.000 0.00 0.00 0.00 2.17
1942 2005 4.803329 ATCCAACCAGCCTATCAAATCT 57.197 40.909 0.00 0.00 0.00 2.40
1943 2006 3.889815 TCCAACCAGCCTATCAAATCTG 58.110 45.455 0.00 0.00 0.00 2.90
1944 2007 3.523157 TCCAACCAGCCTATCAAATCTGA 59.477 43.478 0.00 0.00 35.56 3.27
1945 2008 3.629398 CCAACCAGCCTATCAAATCTGAC 59.371 47.826 0.00 0.00 33.30 3.51
1946 2009 4.264253 CAACCAGCCTATCAAATCTGACA 58.736 43.478 0.00 0.00 33.30 3.58
1947 2010 3.878778 ACCAGCCTATCAAATCTGACAC 58.121 45.455 0.00 0.00 33.30 3.67
1948 2011 2.868583 CCAGCCTATCAAATCTGACACG 59.131 50.000 0.00 0.00 33.30 4.49
1949 2012 3.525537 CAGCCTATCAAATCTGACACGT 58.474 45.455 0.00 0.00 33.30 4.49
1950 2013 4.441495 CCAGCCTATCAAATCTGACACGTA 60.441 45.833 0.00 0.00 33.30 3.57
1951 2014 4.504461 CAGCCTATCAAATCTGACACGTAC 59.496 45.833 0.00 0.00 33.30 3.67
1952 2015 4.159693 AGCCTATCAAATCTGACACGTACA 59.840 41.667 0.00 0.00 33.30 2.90
1953 2016 5.050490 GCCTATCAAATCTGACACGTACAT 58.950 41.667 0.00 0.00 33.30 2.29
1954 2017 5.175856 GCCTATCAAATCTGACACGTACATC 59.824 44.000 0.00 0.00 33.30 3.06
1955 2018 6.273071 CCTATCAAATCTGACACGTACATCA 58.727 40.000 0.00 0.00 33.30 3.07
1956 2019 6.199154 CCTATCAAATCTGACACGTACATCAC 59.801 42.308 0.00 0.00 33.30 3.06
1957 2020 4.877282 TCAAATCTGACACGTACATCACA 58.123 39.130 0.00 0.00 0.00 3.58
1958 2021 4.684242 TCAAATCTGACACGTACATCACAC 59.316 41.667 0.00 0.00 0.00 3.82
1959 2022 3.934457 ATCTGACACGTACATCACACA 57.066 42.857 0.00 0.00 0.00 3.72
1960 2023 3.007979 TCTGACACGTACATCACACAC 57.992 47.619 0.00 0.00 0.00 3.82
1961 2024 2.058798 CTGACACGTACATCACACACC 58.941 52.381 0.00 0.00 0.00 4.16
1962 2025 1.057636 GACACGTACATCACACACCG 58.942 55.000 0.00 0.00 0.00 4.94
1963 2026 0.942410 ACACGTACATCACACACCGC 60.942 55.000 0.00 0.00 0.00 5.68
1964 2027 0.666274 CACGTACATCACACACCGCT 60.666 55.000 0.00 0.00 0.00 5.52
1965 2028 0.388134 ACGTACATCACACACCGCTC 60.388 55.000 0.00 0.00 0.00 5.03
1966 2029 0.388006 CGTACATCACACACCGCTCA 60.388 55.000 0.00 0.00 0.00 4.26
1967 2030 1.790755 GTACATCACACACCGCTCAA 58.209 50.000 0.00 0.00 0.00 3.02
1968 2031 2.139917 GTACATCACACACCGCTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
1969 2032 1.674359 ACATCACACACCGCTCAAAA 58.326 45.000 0.00 0.00 0.00 2.44
1970 2033 1.603802 ACATCACACACCGCTCAAAAG 59.396 47.619 0.00 0.00 0.00 2.27
1971 2034 1.872952 CATCACACACCGCTCAAAAGA 59.127 47.619 0.00 0.00 0.00 2.52
1972 2035 2.031258 TCACACACCGCTCAAAAGAA 57.969 45.000 0.00 0.00 0.00 2.52
1973 2036 2.360844 TCACACACCGCTCAAAAGAAA 58.639 42.857 0.00 0.00 0.00 2.52
1974 2037 2.750166 TCACACACCGCTCAAAAGAAAA 59.250 40.909 0.00 0.00 0.00 2.29
1975 2038 3.191581 TCACACACCGCTCAAAAGAAAAA 59.808 39.130 0.00 0.00 0.00 1.94
1976 2039 3.303229 CACACACCGCTCAAAAGAAAAAC 59.697 43.478 0.00 0.00 0.00 2.43
1977 2040 2.857748 CACACCGCTCAAAAGAAAAACC 59.142 45.455 0.00 0.00 0.00 3.27
1978 2041 2.758423 ACACCGCTCAAAAGAAAAACCT 59.242 40.909 0.00 0.00 0.00 3.50
1979 2042 3.949113 ACACCGCTCAAAAGAAAAACCTA 59.051 39.130 0.00 0.00 0.00 3.08
1980 2043 4.399934 ACACCGCTCAAAAGAAAAACCTAA 59.600 37.500 0.00 0.00 0.00 2.69
1981 2044 5.068591 ACACCGCTCAAAAGAAAAACCTAAT 59.931 36.000 0.00 0.00 0.00 1.73
1982 2045 5.402270 CACCGCTCAAAAGAAAAACCTAATG 59.598 40.000 0.00 0.00 0.00 1.90
1983 2046 4.385748 CCGCTCAAAAGAAAAACCTAATGC 59.614 41.667 0.00 0.00 0.00 3.56
1984 2047 4.981674 CGCTCAAAAGAAAAACCTAATGCA 59.018 37.500 0.00 0.00 0.00 3.96
1985 2048 5.634859 CGCTCAAAAGAAAAACCTAATGCAT 59.365 36.000 0.00 0.00 0.00 3.96
1986 2049 6.183360 CGCTCAAAAGAAAAACCTAATGCATC 60.183 38.462 0.00 0.00 0.00 3.91
1987 2050 6.646240 GCTCAAAAGAAAAACCTAATGCATCA 59.354 34.615 0.00 0.00 0.00 3.07
1988 2051 7.359514 GCTCAAAAGAAAAACCTAATGCATCAC 60.360 37.037 0.00 0.00 0.00 3.06
1989 2052 7.495901 TCAAAAGAAAAACCTAATGCATCACA 58.504 30.769 0.00 0.00 0.00 3.58
1990 2053 7.437862 TCAAAAGAAAAACCTAATGCATCACAC 59.562 33.333 0.00 0.00 0.00 3.82
1991 2054 5.391312 AGAAAAACCTAATGCATCACACC 57.609 39.130 0.00 0.00 0.00 4.16
1992 2055 4.220602 AGAAAAACCTAATGCATCACACCC 59.779 41.667 0.00 0.00 0.00 4.61
1993 2056 2.143876 AACCTAATGCATCACACCCC 57.856 50.000 0.00 0.00 0.00 4.95
1994 2057 1.298953 ACCTAATGCATCACACCCCT 58.701 50.000 0.00 0.00 0.00 4.79
1995 2058 1.064463 ACCTAATGCATCACACCCCTG 60.064 52.381 0.00 0.00 0.00 4.45
1996 2059 1.027357 CTAATGCATCACACCCCTGC 58.973 55.000 0.00 0.00 36.45 4.85
1998 2061 2.765279 TGCATCACACCCCTGCAT 59.235 55.556 0.00 0.00 40.75 3.96
1999 2062 1.997714 TGCATCACACCCCTGCATA 59.002 52.632 0.00 0.00 40.75 3.14
2000 2063 0.552363 TGCATCACACCCCTGCATAT 59.448 50.000 0.00 0.00 40.75 1.78
2001 2064 1.063792 TGCATCACACCCCTGCATATT 60.064 47.619 0.00 0.00 40.75 1.28
2002 2065 2.174424 TGCATCACACCCCTGCATATTA 59.826 45.455 0.00 0.00 40.75 0.98
2003 2066 3.221771 GCATCACACCCCTGCATATTAA 58.778 45.455 0.00 0.00 35.96 1.40
2004 2067 3.004734 GCATCACACCCCTGCATATTAAC 59.995 47.826 0.00 0.00 35.96 2.01
2005 2068 4.464008 CATCACACCCCTGCATATTAACT 58.536 43.478 0.00 0.00 0.00 2.24
2006 2069 5.620206 CATCACACCCCTGCATATTAACTA 58.380 41.667 0.00 0.00 0.00 2.24
2007 2070 5.702065 TCACACCCCTGCATATTAACTAA 57.298 39.130 0.00 0.00 0.00 2.24
2008 2071 6.260700 TCACACCCCTGCATATTAACTAAT 57.739 37.500 0.00 0.00 0.00 1.73
2009 2072 6.668645 TCACACCCCTGCATATTAACTAATT 58.331 36.000 0.00 0.00 0.00 1.40
2010 2073 7.807198 TCACACCCCTGCATATTAACTAATTA 58.193 34.615 0.00 0.00 0.00 1.40
2011 2074 8.275758 TCACACCCCTGCATATTAACTAATTAA 58.724 33.333 0.00 0.00 34.78 1.40
2012 2075 8.349983 CACACCCCTGCATATTAACTAATTAAC 58.650 37.037 0.00 0.00 33.09 2.01
2013 2076 8.279361 ACACCCCTGCATATTAACTAATTAACT 58.721 33.333 0.00 0.00 33.09 2.24
2014 2077 9.787435 CACCCCTGCATATTAACTAATTAACTA 57.213 33.333 0.00 0.00 33.09 2.24
2098 2161 8.871686 AAAAACACCAATTTTGTATCTCAGTC 57.128 30.769 0.00 0.00 32.12 3.51
2099 2162 7.581213 AAACACCAATTTTGTATCTCAGTCA 57.419 32.000 0.00 0.00 0.00 3.41
2100 2163 7.765695 AACACCAATTTTGTATCTCAGTCAT 57.234 32.000 0.00 0.00 0.00 3.06
2101 2164 8.862325 AACACCAATTTTGTATCTCAGTCATA 57.138 30.769 0.00 0.00 0.00 2.15
2102 2165 9.466497 AACACCAATTTTGTATCTCAGTCATAT 57.534 29.630 0.00 0.00 0.00 1.78
2111 2174 9.586435 TTTGTATCTCAGTCATATATTATGCGG 57.414 33.333 0.00 0.00 0.00 5.69
2112 2175 8.519799 TGTATCTCAGTCATATATTATGCGGA 57.480 34.615 0.00 0.00 0.00 5.54
2113 2176 8.624776 TGTATCTCAGTCATATATTATGCGGAG 58.375 37.037 10.05 10.05 0.00 4.63
2186 2249 9.965824 ATTATTGTTTTATCATTTGGATCGGTC 57.034 29.630 0.00 0.00 37.44 4.79
2187 2250 5.828299 TGTTTTATCATTTGGATCGGTCC 57.172 39.130 8.12 8.12 45.31 4.46
2188 2251 5.505780 TGTTTTATCATTTGGATCGGTCCT 58.494 37.500 17.40 0.00 45.32 3.85
2189 2252 5.949354 TGTTTTATCATTTGGATCGGTCCTT 59.051 36.000 17.40 0.00 45.32 3.36
2190 2253 6.435904 TGTTTTATCATTTGGATCGGTCCTTT 59.564 34.615 17.40 0.00 45.32 3.11
2191 2254 7.039363 TGTTTTATCATTTGGATCGGTCCTTTT 60.039 33.333 17.40 0.00 45.32 2.27
2192 2255 8.463607 GTTTTATCATTTGGATCGGTCCTTTTA 58.536 33.333 17.40 0.00 45.32 1.52
2193 2256 8.760980 TTTATCATTTGGATCGGTCCTTTTAT 57.239 30.769 17.40 5.89 45.32 1.40
2194 2257 8.760980 TTATCATTTGGATCGGTCCTTTTATT 57.239 30.769 17.40 0.00 45.32 1.40
2195 2258 7.660030 ATCATTTGGATCGGTCCTTTTATTT 57.340 32.000 17.40 0.00 45.32 1.40
2196 2259 7.475137 TCATTTGGATCGGTCCTTTTATTTT 57.525 32.000 17.40 0.00 45.32 1.82
2197 2260 7.902087 TCATTTGGATCGGTCCTTTTATTTTT 58.098 30.769 17.40 0.00 45.32 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.850345 GGAGAGGAAGGAGAGAGAGGA 59.150 57.143 0.00 0.00 0.00 3.71
132 149 3.820486 GCCTCCCTCCCCGTATATAAAGA 60.820 52.174 0.00 0.00 0.00 2.52
211 230 2.036475 CGAGGTGGATTATGGTGGAGAG 59.964 54.545 0.00 0.00 0.00 3.20
212 231 2.039418 CGAGGTGGATTATGGTGGAGA 58.961 52.381 0.00 0.00 0.00 3.71
237 256 1.215655 GCCTAAGCACCGCTACGATG 61.216 60.000 0.00 0.00 38.25 3.84
461 482 3.259123 ACGTACCCTCGTAGACCAAAAAT 59.741 43.478 0.00 0.00 42.35 1.82
466 487 0.677731 CCACGTACCCTCGTAGACCA 60.678 60.000 0.00 0.00 42.27 4.02
517 539 0.670239 ACGCACACGCAAGATCATGA 60.670 50.000 1.25 0.00 45.53 3.07
590 612 0.671163 TGACCCGATTAACCGTGTGC 60.671 55.000 0.00 0.00 0.00 4.57
595 617 1.164041 GGCCATGACCCGATTAACCG 61.164 60.000 0.00 0.00 0.00 4.44
670 692 2.482296 CTAAACGGGGCGTGTCGTCT 62.482 60.000 0.00 0.00 39.99 4.18
671 693 2.049248 TAAACGGGGCGTGTCGTC 60.049 61.111 0.00 0.00 39.99 4.20
840 878 2.750237 CCAGGGCTTAACGCACCC 60.750 66.667 0.00 0.00 45.64 4.61
869 907 2.517919 GATGGGATCTGGTGGCCC 59.482 66.667 0.00 0.00 42.38 5.80
920 961 3.079578 AGCTTGTGAGTTGTGATGATGG 58.920 45.455 0.00 0.00 0.00 3.51
921 962 3.669824 GCAGCTTGTGAGTTGTGATGATG 60.670 47.826 0.00 0.00 36.58 3.07
959 1022 3.380320 TGTCGCCGAGAGAAGAATGATTA 59.620 43.478 0.00 0.00 0.00 1.75
1152 1215 2.045926 CTGGGCTTGGGTTCGGAG 60.046 66.667 0.00 0.00 0.00 4.63
1176 1239 4.787280 ACGGGGGAGAGGAGCTGG 62.787 72.222 0.00 0.00 0.00 4.85
1225 1288 6.493449 TTGATCAATTCAATACGAGCACAA 57.507 33.333 3.38 0.00 39.44 3.33
1282 1345 4.933400 CCCAAAATCAGAGCAATTCAAAGG 59.067 41.667 0.00 0.00 0.00 3.11
1288 1351 2.094545 GCGACCCAAAATCAGAGCAATT 60.095 45.455 0.00 0.00 0.00 2.32
1308 1371 2.825836 CTCGGTGGCAATCAGGGC 60.826 66.667 0.00 0.00 0.00 5.19
1311 1374 1.817099 GGCTCTCGGTGGCAATCAG 60.817 63.158 0.00 0.00 0.00 2.90
1327 1390 8.290325 GTCATGCAAATAAATTAGGTAGTAGGC 58.710 37.037 0.00 0.00 0.00 3.93
1345 1408 6.258727 GCTCTTAGCTTAATACAGTCATGCAA 59.741 38.462 0.00 0.00 38.45 4.08
1366 1429 1.002250 CAAACGCGTCGTACAGCTCT 61.002 55.000 14.44 0.00 39.99 4.09
1372 1435 0.160182 CTGAACCAAACGCGTCGTAC 59.840 55.000 14.44 3.11 39.99 3.67
1373 1436 0.940519 CCTGAACCAAACGCGTCGTA 60.941 55.000 14.44 0.00 39.99 3.43
1374 1437 2.241880 CCTGAACCAAACGCGTCGT 61.242 57.895 14.44 6.47 43.97 4.34
1375 1438 2.154427 GACCTGAACCAAACGCGTCG 62.154 60.000 14.44 6.98 0.00 5.12
1376 1439 1.155424 TGACCTGAACCAAACGCGTC 61.155 55.000 14.44 0.00 0.00 5.19
1377 1440 1.153329 TGACCTGAACCAAACGCGT 60.153 52.632 5.58 5.58 0.00 6.01
1378 1441 1.569493 CTGACCTGAACCAAACGCG 59.431 57.895 3.53 3.53 0.00 6.01
1379 1442 0.818040 ACCTGACCTGAACCAAACGC 60.818 55.000 0.00 0.00 0.00 4.84
1380 1443 2.536761 TACCTGACCTGAACCAAACG 57.463 50.000 0.00 0.00 0.00 3.60
1381 1444 4.142038 ACATTACCTGACCTGAACCAAAC 58.858 43.478 0.00 0.00 0.00 2.93
1382 1445 4.447138 ACATTACCTGACCTGAACCAAA 57.553 40.909 0.00 0.00 0.00 3.28
1383 1446 4.447138 AACATTACCTGACCTGAACCAA 57.553 40.909 0.00 0.00 0.00 3.67
1384 1447 4.447138 AAACATTACCTGACCTGAACCA 57.553 40.909 0.00 0.00 0.00 3.67
1385 1448 4.825085 TGAAAACATTACCTGACCTGAACC 59.175 41.667 0.00 0.00 0.00 3.62
1386 1449 5.763204 TCTGAAAACATTACCTGACCTGAAC 59.237 40.000 0.00 0.00 0.00 3.18
1387 1450 5.935945 TCTGAAAACATTACCTGACCTGAA 58.064 37.500 0.00 0.00 0.00 3.02
1388 1451 5.560722 TCTGAAAACATTACCTGACCTGA 57.439 39.130 0.00 0.00 0.00 3.86
1389 1452 6.824305 AATCTGAAAACATTACCTGACCTG 57.176 37.500 0.00 0.00 0.00 4.00
1390 1453 6.777580 ACAAATCTGAAAACATTACCTGACCT 59.222 34.615 0.00 0.00 0.00 3.85
1391 1454 6.981722 ACAAATCTGAAAACATTACCTGACC 58.018 36.000 0.00 0.00 0.00 4.02
1405 1468 9.725019 ACACTGTATTCTGATTACAAATCTGAA 57.275 29.630 18.28 18.28 39.26 3.02
1412 1475 9.542462 GCCTAATACACTGTATTCTGATTACAA 57.458 33.333 16.22 0.00 0.00 2.41
1413 1476 8.924303 AGCCTAATACACTGTATTCTGATTACA 58.076 33.333 16.22 10.85 0.00 2.41
1414 1477 9.197694 CAGCCTAATACACTGTATTCTGATTAC 57.802 37.037 16.22 3.39 0.00 1.89
1415 1478 8.924303 ACAGCCTAATACACTGTATTCTGATTA 58.076 33.333 23.37 7.46 42.65 1.75
1416 1479 7.712639 CACAGCCTAATACACTGTATTCTGATT 59.287 37.037 23.37 9.42 42.59 2.57
1417 1480 7.212976 CACAGCCTAATACACTGTATTCTGAT 58.787 38.462 23.37 12.50 42.59 2.90
1418 1481 6.406961 CCACAGCCTAATACACTGTATTCTGA 60.407 42.308 23.37 8.50 42.59 3.27
1419 1482 5.755375 CCACAGCCTAATACACTGTATTCTG 59.245 44.000 16.22 17.73 42.59 3.02
1420 1483 5.661312 TCCACAGCCTAATACACTGTATTCT 59.339 40.000 16.22 6.72 42.59 2.40
1421 1484 5.914033 TCCACAGCCTAATACACTGTATTC 58.086 41.667 16.22 4.76 42.59 1.75
1422 1485 5.950544 TCCACAGCCTAATACACTGTATT 57.049 39.130 16.81 16.81 42.59 1.89
1423 1486 6.291377 CAATCCACAGCCTAATACACTGTAT 58.709 40.000 0.00 0.00 42.59 2.29
1424 1487 5.396324 CCAATCCACAGCCTAATACACTGTA 60.396 44.000 0.00 0.00 42.59 2.74
1425 1488 4.517285 CAATCCACAGCCTAATACACTGT 58.483 43.478 0.00 0.00 45.25 3.55
1426 1489 3.879295 CCAATCCACAGCCTAATACACTG 59.121 47.826 0.00 0.00 37.45 3.66
1427 1490 3.685550 GCCAATCCACAGCCTAATACACT 60.686 47.826 0.00 0.00 0.00 3.55
1428 1491 2.618709 GCCAATCCACAGCCTAATACAC 59.381 50.000 0.00 0.00 0.00 2.90
1429 1492 2.509548 AGCCAATCCACAGCCTAATACA 59.490 45.455 0.00 0.00 0.00 2.29
1430 1493 2.880890 CAGCCAATCCACAGCCTAATAC 59.119 50.000 0.00 0.00 0.00 1.89
1431 1494 2.777114 TCAGCCAATCCACAGCCTAATA 59.223 45.455 0.00 0.00 0.00 0.98
1432 1495 1.565759 TCAGCCAATCCACAGCCTAAT 59.434 47.619 0.00 0.00 0.00 1.73
1433 1496 0.991146 TCAGCCAATCCACAGCCTAA 59.009 50.000 0.00 0.00 0.00 2.69
1434 1497 1.216064 ATCAGCCAATCCACAGCCTA 58.784 50.000 0.00 0.00 0.00 3.93
1435 1498 0.333993 AATCAGCCAATCCACAGCCT 59.666 50.000 0.00 0.00 0.00 4.58
1436 1499 1.678101 GTAATCAGCCAATCCACAGCC 59.322 52.381 0.00 0.00 0.00 4.85
1437 1500 1.331756 CGTAATCAGCCAATCCACAGC 59.668 52.381 0.00 0.00 0.00 4.40
1438 1501 2.352651 CACGTAATCAGCCAATCCACAG 59.647 50.000 0.00 0.00 0.00 3.66
1439 1502 2.027653 TCACGTAATCAGCCAATCCACA 60.028 45.455 0.00 0.00 0.00 4.17
1440 1503 2.627945 TCACGTAATCAGCCAATCCAC 58.372 47.619 0.00 0.00 0.00 4.02
1441 1504 3.205338 CATCACGTAATCAGCCAATCCA 58.795 45.455 0.00 0.00 0.00 3.41
1442 1505 2.031682 GCATCACGTAATCAGCCAATCC 60.032 50.000 0.00 0.00 0.00 3.01
1443 1506 2.348872 CGCATCACGTAATCAGCCAATC 60.349 50.000 0.00 0.00 36.87 2.67
1444 1507 1.599071 CGCATCACGTAATCAGCCAAT 59.401 47.619 0.00 0.00 36.87 3.16
1445 1508 1.006086 CGCATCACGTAATCAGCCAA 58.994 50.000 0.00 0.00 36.87 4.52
1446 1509 2.676744 CGCATCACGTAATCAGCCA 58.323 52.632 0.00 0.00 36.87 4.75
1457 1520 0.450482 CGTCGAACCAAACGCATCAC 60.450 55.000 0.00 0.00 31.48 3.06
1458 1521 0.597898 TCGTCGAACCAAACGCATCA 60.598 50.000 0.00 0.00 38.72 3.07
1459 1522 0.509499 TTCGTCGAACCAAACGCATC 59.491 50.000 2.90 0.00 38.72 3.91
1460 1523 0.511221 CTTCGTCGAACCAAACGCAT 59.489 50.000 2.90 0.00 38.72 4.73
1461 1524 1.492319 CCTTCGTCGAACCAAACGCA 61.492 55.000 2.90 0.00 38.72 5.24
1462 1525 1.203313 CCTTCGTCGAACCAAACGC 59.797 57.895 2.90 0.00 38.72 4.84
1463 1526 0.877213 ACCCTTCGTCGAACCAAACG 60.877 55.000 2.90 0.00 40.17 3.60
1464 1527 1.003223 CAACCCTTCGTCGAACCAAAC 60.003 52.381 2.90 0.00 0.00 2.93
1465 1528 1.301423 CAACCCTTCGTCGAACCAAA 58.699 50.000 2.90 0.00 0.00 3.28
1466 1529 0.533308 CCAACCCTTCGTCGAACCAA 60.533 55.000 2.90 0.00 0.00 3.67
1467 1530 1.070105 CCAACCCTTCGTCGAACCA 59.930 57.895 2.90 0.00 0.00 3.67
1468 1531 0.533531 AACCAACCCTTCGTCGAACC 60.534 55.000 2.90 0.00 0.00 3.62
1469 1532 1.262417 GAAACCAACCCTTCGTCGAAC 59.738 52.381 2.90 0.00 0.00 3.95
1470 1533 1.585297 GAAACCAACCCTTCGTCGAA 58.415 50.000 7.57 7.57 0.00 3.71
1471 1534 0.249996 GGAAACCAACCCTTCGTCGA 60.250 55.000 0.00 0.00 0.00 4.20
1472 1535 2.241171 GGAAACCAACCCTTCGTCG 58.759 57.895 0.00 0.00 0.00 5.12
1485 1548 1.029681 AACGCTCTGGTTTGGGAAAC 58.970 50.000 0.00 0.00 40.65 2.78
1486 1549 2.105134 TCTAACGCTCTGGTTTGGGAAA 59.895 45.455 0.00 0.00 0.00 3.13
1487 1550 1.695242 TCTAACGCTCTGGTTTGGGAA 59.305 47.619 0.00 0.00 0.00 3.97
1488 1551 1.344065 TCTAACGCTCTGGTTTGGGA 58.656 50.000 0.00 0.00 0.00 4.37
1489 1552 2.178912 TTCTAACGCTCTGGTTTGGG 57.821 50.000 0.00 0.00 0.00 4.12
1490 1553 3.813166 TCTTTTCTAACGCTCTGGTTTGG 59.187 43.478 0.00 0.00 0.00 3.28
1491 1554 5.007724 ACTTCTTTTCTAACGCTCTGGTTTG 59.992 40.000 0.00 0.00 0.00 2.93
1492 1555 5.007724 CACTTCTTTTCTAACGCTCTGGTTT 59.992 40.000 0.00 0.00 0.00 3.27
1493 1556 4.511826 CACTTCTTTTCTAACGCTCTGGTT 59.488 41.667 0.00 0.00 0.00 3.67
1494 1557 4.058817 CACTTCTTTTCTAACGCTCTGGT 58.941 43.478 0.00 0.00 0.00 4.00
1495 1558 4.307432 TCACTTCTTTTCTAACGCTCTGG 58.693 43.478 0.00 0.00 0.00 3.86
1496 1559 4.387256 CCTCACTTCTTTTCTAACGCTCTG 59.613 45.833 0.00 0.00 0.00 3.35
1497 1560 4.281182 TCCTCACTTCTTTTCTAACGCTCT 59.719 41.667 0.00 0.00 0.00 4.09
1498 1561 4.557205 TCCTCACTTCTTTTCTAACGCTC 58.443 43.478 0.00 0.00 0.00 5.03
1499 1562 4.281182 TCTCCTCACTTCTTTTCTAACGCT 59.719 41.667 0.00 0.00 0.00 5.07
1500 1563 4.557205 TCTCCTCACTTCTTTTCTAACGC 58.443 43.478 0.00 0.00 0.00 4.84
1501 1564 5.635700 CCTTCTCCTCACTTCTTTTCTAACG 59.364 44.000 0.00 0.00 0.00 3.18
1502 1565 5.935206 CCCTTCTCCTCACTTCTTTTCTAAC 59.065 44.000 0.00 0.00 0.00 2.34
1503 1566 5.844516 TCCCTTCTCCTCACTTCTTTTCTAA 59.155 40.000 0.00 0.00 0.00 2.10
1504 1567 5.403512 TCCCTTCTCCTCACTTCTTTTCTA 58.596 41.667 0.00 0.00 0.00 2.10
1505 1568 4.235372 TCCCTTCTCCTCACTTCTTTTCT 58.765 43.478 0.00 0.00 0.00 2.52
1506 1569 4.284746 TCTCCCTTCTCCTCACTTCTTTTC 59.715 45.833 0.00 0.00 0.00 2.29
1507 1570 4.235372 TCTCCCTTCTCCTCACTTCTTTT 58.765 43.478 0.00 0.00 0.00 2.27
1508 1571 3.837731 CTCTCCCTTCTCCTCACTTCTTT 59.162 47.826 0.00 0.00 0.00 2.52
1509 1572 3.440127 CTCTCCCTTCTCCTCACTTCTT 58.560 50.000 0.00 0.00 0.00 2.52
1510 1573 2.292192 CCTCTCCCTTCTCCTCACTTCT 60.292 54.545 0.00 0.00 0.00 2.85
1511 1574 2.107366 CCTCTCCCTTCTCCTCACTTC 58.893 57.143 0.00 0.00 0.00 3.01
1512 1575 1.899438 GCCTCTCCCTTCTCCTCACTT 60.899 57.143 0.00 0.00 0.00 3.16
1513 1576 0.325203 GCCTCTCCCTTCTCCTCACT 60.325 60.000 0.00 0.00 0.00 3.41
1514 1577 0.325203 AGCCTCTCCCTTCTCCTCAC 60.325 60.000 0.00 0.00 0.00 3.51
1515 1578 0.032615 GAGCCTCTCCCTTCTCCTCA 60.033 60.000 0.00 0.00 0.00 3.86
1516 1579 1.106944 CGAGCCTCTCCCTTCTCCTC 61.107 65.000 0.00 0.00 0.00 3.71
1517 1580 1.076339 CGAGCCTCTCCCTTCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
1518 1581 2.131067 CCGAGCCTCTCCCTTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
1519 1582 2.791868 GCCGAGCCTCTCCCTTCTC 61.792 68.421 0.00 0.00 0.00 2.87
1520 1583 2.762043 GCCGAGCCTCTCCCTTCT 60.762 66.667 0.00 0.00 0.00 2.85
1521 1584 3.855853 GGCCGAGCCTCTCCCTTC 61.856 72.222 7.58 0.00 46.69 3.46
1541 1604 2.573341 CTTCGTCGCAAGCAGGCATG 62.573 60.000 0.00 0.00 37.18 4.06
1542 1605 2.358615 TTCGTCGCAAGCAGGCAT 60.359 55.556 0.50 0.00 37.18 4.40
1543 1606 2.987282 TTCTTCGTCGCAAGCAGGCA 62.987 55.000 0.50 0.00 37.18 4.75
1544 1607 2.233007 CTTCTTCGTCGCAAGCAGGC 62.233 60.000 0.00 0.00 37.18 4.85
1545 1608 1.630244 CCTTCTTCGTCGCAAGCAGG 61.630 60.000 8.04 8.04 31.53 4.85
1546 1609 1.630244 CCCTTCTTCGTCGCAAGCAG 61.630 60.000 0.00 0.00 37.18 4.24
1547 1610 1.667830 CCCTTCTTCGTCGCAAGCA 60.668 57.895 0.00 0.00 37.18 3.91
1548 1611 2.391389 CCCCTTCTTCGTCGCAAGC 61.391 63.158 0.00 0.00 37.18 4.01
1549 1612 0.108138 ATCCCCTTCTTCGTCGCAAG 60.108 55.000 0.00 0.00 0.00 4.01
1550 1613 0.391130 CATCCCCTTCTTCGTCGCAA 60.391 55.000 0.00 0.00 0.00 4.85
1551 1614 1.218047 CATCCCCTTCTTCGTCGCA 59.782 57.895 0.00 0.00 0.00 5.10
1552 1615 0.806492 GACATCCCCTTCTTCGTCGC 60.806 60.000 0.00 0.00 0.00 5.19
1553 1616 0.179108 GGACATCCCCTTCTTCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
1554 1617 0.179108 CGGACATCCCCTTCTTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
1555 1618 1.614241 CCGGACATCCCCTTCTTCGT 61.614 60.000 0.00 0.00 0.00 3.85
1556 1619 1.144057 CCGGACATCCCCTTCTTCG 59.856 63.158 0.00 0.00 0.00 3.79
1557 1620 1.153147 GCCGGACATCCCCTTCTTC 60.153 63.158 5.05 0.00 0.00 2.87
1558 1621 1.497309 TTGCCGGACATCCCCTTCTT 61.497 55.000 5.05 0.00 0.00 2.52
1559 1622 1.915078 CTTGCCGGACATCCCCTTCT 61.915 60.000 5.05 0.00 0.00 2.85
1560 1623 1.452108 CTTGCCGGACATCCCCTTC 60.452 63.158 5.05 0.00 0.00 3.46
1561 1624 2.677228 CTTGCCGGACATCCCCTT 59.323 61.111 5.05 0.00 0.00 3.95
1562 1625 3.411517 CCTTGCCGGACATCCCCT 61.412 66.667 5.05 0.00 33.16 4.79
1563 1626 4.506255 CCCTTGCCGGACATCCCC 62.506 72.222 5.05 0.00 33.16 4.81
1564 1627 4.506255 CCCCTTGCCGGACATCCC 62.506 72.222 5.05 0.00 33.16 3.85
1565 1628 4.506255 CCCCCTTGCCGGACATCC 62.506 72.222 5.05 0.00 33.16 3.51
1575 1638 4.697756 TTCGTCGCAGCCCCCTTG 62.698 66.667 0.00 0.00 0.00 3.61
1576 1639 4.394712 CTTCGTCGCAGCCCCCTT 62.395 66.667 0.00 0.00 0.00 3.95
1578 1641 4.388499 TTCTTCGTCGCAGCCCCC 62.388 66.667 0.00 0.00 0.00 5.40
1579 1642 2.815647 CTTCTTCGTCGCAGCCCC 60.816 66.667 0.00 0.00 0.00 5.80
1580 1643 2.815647 CCTTCTTCGTCGCAGCCC 60.816 66.667 0.00 0.00 0.00 5.19
1581 1644 2.815647 CCCTTCTTCGTCGCAGCC 60.816 66.667 0.00 0.00 0.00 4.85
1582 1645 2.781595 TTCCCCTTCTTCGTCGCAGC 62.782 60.000 0.00 0.00 0.00 5.25
1583 1646 0.737715 CTTCCCCTTCTTCGTCGCAG 60.738 60.000 0.00 0.00 0.00 5.18
1584 1647 1.292223 CTTCCCCTTCTTCGTCGCA 59.708 57.895 0.00 0.00 0.00 5.10
1585 1648 0.736672 GACTTCCCCTTCTTCGTCGC 60.737 60.000 0.00 0.00 0.00 5.19
1586 1649 0.108756 GGACTTCCCCTTCTTCGTCG 60.109 60.000 0.00 0.00 0.00 5.12
1587 1650 0.108756 CGGACTTCCCCTTCTTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
1588 1651 1.542187 CCGGACTTCCCCTTCTTCGT 61.542 60.000 0.00 0.00 0.00 3.85
1589 1652 1.218316 CCGGACTTCCCCTTCTTCG 59.782 63.158 0.00 0.00 0.00 3.79
1590 1653 1.078356 GCCGGACTTCCCCTTCTTC 60.078 63.158 5.05 0.00 0.00 2.87
1591 1654 1.423794 TTGCCGGACTTCCCCTTCTT 61.424 55.000 5.05 0.00 0.00 2.52
1592 1655 1.842381 CTTGCCGGACTTCCCCTTCT 61.842 60.000 5.05 0.00 0.00 2.85
1593 1656 1.377333 CTTGCCGGACTTCCCCTTC 60.377 63.158 5.05 0.00 0.00 3.46
1594 1657 2.757077 CTTGCCGGACTTCCCCTT 59.243 61.111 5.05 0.00 0.00 3.95
1595 1658 3.330720 CCTTGCCGGACTTCCCCT 61.331 66.667 5.05 0.00 33.16 4.79
1596 1659 4.426313 CCCTTGCCGGACTTCCCC 62.426 72.222 5.05 0.00 33.16 4.81
1597 1660 4.426313 CCCCTTGCCGGACTTCCC 62.426 72.222 5.05 0.00 33.16 3.97
1598 1661 4.426313 CCCCCTTGCCGGACTTCC 62.426 72.222 5.05 0.00 33.16 3.46
1623 1686 3.227276 CTCTCCCCATCCCCGTCG 61.227 72.222 0.00 0.00 0.00 5.12
1624 1687 3.551407 GCTCTCCCCATCCCCGTC 61.551 72.222 0.00 0.00 0.00 4.79
1625 1688 4.095400 AGCTCTCCCCATCCCCGT 62.095 66.667 0.00 0.00 0.00 5.28
1626 1689 3.237741 GAGCTCTCCCCATCCCCG 61.238 72.222 6.43 0.00 0.00 5.73
1627 1690 2.851588 GGAGCTCTCCCCATCCCC 60.852 72.222 14.64 0.00 43.94 4.81
1628 1691 3.237741 CGGAGCTCTCCCCATCCC 61.238 72.222 14.64 0.00 46.96 3.85
1651 1714 4.803426 GTCGCTAGCAGCCACGCT 62.803 66.667 16.45 0.00 46.26 5.07
1654 1717 4.129737 TCCGTCGCTAGCAGCCAC 62.130 66.667 16.45 4.36 38.18 5.01
1655 1718 3.826754 CTCCGTCGCTAGCAGCCA 61.827 66.667 16.45 0.00 38.18 4.75
1656 1719 2.945398 CTTCTCCGTCGCTAGCAGCC 62.945 65.000 16.45 0.08 38.18 4.85
1657 1720 1.587613 CTTCTCCGTCGCTAGCAGC 60.588 63.158 16.45 5.47 38.02 5.25
1658 1721 1.064946 CCTTCTCCGTCGCTAGCAG 59.935 63.158 16.45 7.87 0.00 4.24
1659 1722 2.415608 CCCTTCTCCGTCGCTAGCA 61.416 63.158 16.45 0.00 0.00 3.49
1660 1723 2.413765 CCCTTCTCCGTCGCTAGC 59.586 66.667 4.06 4.06 0.00 3.42
1661 1724 2.491022 CCCCCTTCTCCGTCGCTAG 61.491 68.421 0.00 0.00 0.00 3.42
1662 1725 2.441532 CCCCCTTCTCCGTCGCTA 60.442 66.667 0.00 0.00 0.00 4.26
1663 1726 4.377760 TCCCCCTTCTCCGTCGCT 62.378 66.667 0.00 0.00 0.00 4.93
1664 1727 3.839432 CTCCCCCTTCTCCGTCGC 61.839 72.222 0.00 0.00 0.00 5.19
1665 1728 1.455959 ATCTCCCCCTTCTCCGTCG 60.456 63.158 0.00 0.00 0.00 5.12
1666 1729 1.116536 GGATCTCCCCCTTCTCCGTC 61.117 65.000 0.00 0.00 0.00 4.79
1667 1730 1.075151 GGATCTCCCCCTTCTCCGT 60.075 63.158 0.00 0.00 0.00 4.69
1668 1731 2.203771 CGGATCTCCCCCTTCTCCG 61.204 68.421 0.00 0.00 42.40 4.63
1669 1732 1.839296 CCGGATCTCCCCCTTCTCC 60.839 68.421 0.00 0.00 0.00 3.71
1670 1733 2.512355 GCCGGATCTCCCCCTTCTC 61.512 68.421 5.05 0.00 0.00 2.87
1671 1734 1.665948 TAGCCGGATCTCCCCCTTCT 61.666 60.000 5.05 0.00 0.00 2.85
1672 1735 1.152312 TAGCCGGATCTCCCCCTTC 60.152 63.158 5.05 0.00 0.00 3.46
1673 1736 1.152226 CTAGCCGGATCTCCCCCTT 60.152 63.158 5.05 0.00 0.00 3.95
1674 1737 2.087857 CTCTAGCCGGATCTCCCCCT 62.088 65.000 5.05 0.00 0.00 4.79
1675 1738 1.608046 CTCTAGCCGGATCTCCCCC 60.608 68.421 5.05 0.00 0.00 5.40
1676 1739 2.279810 GCTCTAGCCGGATCTCCCC 61.280 68.421 5.05 0.00 34.31 4.81
1677 1740 1.228737 AGCTCTAGCCGGATCTCCC 60.229 63.158 5.05 0.00 43.38 4.30
1678 1741 0.825840 ACAGCTCTAGCCGGATCTCC 60.826 60.000 5.05 0.00 43.38 3.71
1679 1742 1.036707 AACAGCTCTAGCCGGATCTC 58.963 55.000 5.05 0.00 43.38 2.75
1680 1743 0.749649 CAACAGCTCTAGCCGGATCT 59.250 55.000 5.05 0.00 43.38 2.75
1681 1744 0.878086 GCAACAGCTCTAGCCGGATC 60.878 60.000 5.05 0.00 43.38 3.36
1682 1745 1.144936 GCAACAGCTCTAGCCGGAT 59.855 57.895 5.05 0.00 43.38 4.18
1683 1746 1.984570 AGCAACAGCTCTAGCCGGA 60.985 57.895 5.05 0.00 43.38 5.14
1684 1747 2.581354 AGCAACAGCTCTAGCCGG 59.419 61.111 0.00 0.00 43.38 6.13
1692 1755 1.735920 CTTCTCGCGAGCAACAGCT 60.736 57.895 30.97 0.00 42.41 4.24
1693 1756 2.734673 CCTTCTCGCGAGCAACAGC 61.735 63.158 30.97 0.00 0.00 4.40
1694 1757 1.075425 CTCCTTCTCGCGAGCAACAG 61.075 60.000 30.97 21.02 0.00 3.16
1695 1758 1.080501 CTCCTTCTCGCGAGCAACA 60.081 57.895 30.97 11.48 0.00 3.33
1696 1759 1.807573 CCTCCTTCTCGCGAGCAAC 60.808 63.158 30.97 0.00 0.00 4.17
1697 1760 2.573869 CCTCCTTCTCGCGAGCAA 59.426 61.111 30.97 22.43 0.00 3.91
1698 1761 4.135153 GCCTCCTTCTCGCGAGCA 62.135 66.667 30.97 20.36 0.00 4.26
1699 1762 4.882396 GGCCTCCTTCTCGCGAGC 62.882 72.222 30.97 18.03 0.00 5.03
1700 1763 4.214327 GGGCCTCCTTCTCGCGAG 62.214 72.222 30.03 30.03 0.00 5.03
1725 1788 3.677648 CCCACCACAAGCAGCAGC 61.678 66.667 0.00 0.00 42.56 5.25
1726 1789 2.776370 ATCCCCACCACAAGCAGCAG 62.776 60.000 0.00 0.00 0.00 4.24
1727 1790 2.844195 ATCCCCACCACAAGCAGCA 61.844 57.895 0.00 0.00 0.00 4.41
1728 1791 2.036256 ATCCCCACCACAAGCAGC 59.964 61.111 0.00 0.00 0.00 5.25
1729 1792 1.679977 CCATCCCCACCACAAGCAG 60.680 63.158 0.00 0.00 0.00 4.24
1730 1793 2.440147 CCATCCCCACCACAAGCA 59.560 61.111 0.00 0.00 0.00 3.91
1731 1794 2.362889 CCCATCCCCACCACAAGC 60.363 66.667 0.00 0.00 0.00 4.01
1732 1795 2.360191 CCCCATCCCCACCACAAG 59.640 66.667 0.00 0.00 0.00 3.16
1733 1796 3.272042 CCCCCATCCCCACCACAA 61.272 66.667 0.00 0.00 0.00 3.33
1734 1797 3.611974 ATCCCCCATCCCCACCACA 62.612 63.158 0.00 0.00 0.00 4.17
1735 1798 2.699938 ATCCCCCATCCCCACCAC 60.700 66.667 0.00 0.00 0.00 4.16
1736 1799 2.699554 CATCCCCCATCCCCACCA 60.700 66.667 0.00 0.00 0.00 4.17
1737 1800 2.298335 GAACATCCCCCATCCCCACC 62.298 65.000 0.00 0.00 0.00 4.61
1738 1801 1.230212 GAACATCCCCCATCCCCAC 59.770 63.158 0.00 0.00 0.00 4.61
1739 1802 2.382770 CGAACATCCCCCATCCCCA 61.383 63.158 0.00 0.00 0.00 4.96
1740 1803 2.515901 CGAACATCCCCCATCCCC 59.484 66.667 0.00 0.00 0.00 4.81
1741 1804 2.515901 CCGAACATCCCCCATCCC 59.484 66.667 0.00 0.00 0.00 3.85
1742 1805 2.203351 GCCGAACATCCCCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
1743 1806 2.203351 GGCCGAACATCCCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
1744 1807 4.189580 CGGCCGAACATCCCCCAT 62.190 66.667 24.07 0.00 0.00 4.00
1782 1845 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1784 1847 4.825679 CACTCCCCTCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
1785 1848 4.825679 CCACTCCCCTCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1786 1849 4.825679 CCCACTCCCCTCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
1787 1850 4.825679 CCCCACTCCCCTCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
1802 1865 3.161853 TAGAGGAGCCGGATCCCCC 62.162 68.421 34.60 25.57 40.53 5.40
1803 1866 1.909287 GTAGAGGAGCCGGATCCCC 60.909 68.421 34.60 24.87 40.53 4.81
1804 1867 1.909287 GGTAGAGGAGCCGGATCCC 60.909 68.421 34.60 24.78 40.53 3.85
1805 1868 2.269529 CGGTAGAGGAGCCGGATCC 61.270 68.421 31.74 31.74 43.85 3.36
1806 1869 3.356837 CGGTAGAGGAGCCGGATC 58.643 66.667 12.38 12.38 43.85 3.36
1811 1874 3.851128 GGGCACGGTAGAGGAGCC 61.851 72.222 0.00 0.00 44.48 4.70
1812 1875 2.656069 TTGGGCACGGTAGAGGAGC 61.656 63.158 0.00 0.00 0.00 4.70
1813 1876 1.218316 GTTGGGCACGGTAGAGGAG 59.782 63.158 0.00 0.00 0.00 3.69
1814 1877 2.642254 CGTTGGGCACGGTAGAGGA 61.642 63.158 0.00 0.00 45.89 3.71
1815 1878 2.125673 CGTTGGGCACGGTAGAGG 60.126 66.667 0.00 0.00 45.89 3.69
1826 1889 2.433664 GAGTACCGTGCCGTTGGG 60.434 66.667 0.00 0.00 0.00 4.12
1827 1890 1.736645 CAGAGTACCGTGCCGTTGG 60.737 63.158 0.00 0.00 0.00 3.77
1828 1891 2.380410 GCAGAGTACCGTGCCGTTG 61.380 63.158 5.86 0.00 33.29 4.10
1829 1892 2.048503 GCAGAGTACCGTGCCGTT 60.049 61.111 5.86 0.00 33.29 4.44
1830 1893 4.415332 CGCAGAGTACCGTGCCGT 62.415 66.667 10.61 0.00 36.24 5.68
1832 1895 4.065281 ACCGCAGAGTACCGTGCC 62.065 66.667 10.61 0.00 36.24 5.01
1833 1896 2.809601 CACCGCAGAGTACCGTGC 60.810 66.667 6.93 6.93 36.27 5.34
1834 1897 2.809601 GCACCGCAGAGTACCGTG 60.810 66.667 0.00 0.00 0.00 4.94
1835 1898 4.065281 GGCACCGCAGAGTACCGT 62.065 66.667 0.00 0.00 0.00 4.83
1836 1899 3.296709 AAGGCACCGCAGAGTACCG 62.297 63.158 0.00 0.00 0.00 4.02
1837 1900 1.448013 GAAGGCACCGCAGAGTACC 60.448 63.158 0.00 0.00 0.00 3.34
1838 1901 0.037232 AAGAAGGCACCGCAGAGTAC 60.037 55.000 0.00 0.00 0.00 2.73
1839 1902 0.246635 GAAGAAGGCACCGCAGAGTA 59.753 55.000 0.00 0.00 0.00 2.59
1840 1903 1.004440 GAAGAAGGCACCGCAGAGT 60.004 57.895 0.00 0.00 0.00 3.24
1841 1904 1.743252 GGAAGAAGGCACCGCAGAG 60.743 63.158 0.00 0.00 0.00 3.35
1842 1905 0.902984 TAGGAAGAAGGCACCGCAGA 60.903 55.000 0.00 0.00 0.00 4.26
1843 1906 0.741221 GTAGGAAGAAGGCACCGCAG 60.741 60.000 0.00 0.00 0.00 5.18
1844 1907 1.295423 GTAGGAAGAAGGCACCGCA 59.705 57.895 0.00 0.00 0.00 5.69
1845 1908 1.449778 GGTAGGAAGAAGGCACCGC 60.450 63.158 0.00 0.00 0.00 5.68
1846 1909 1.221021 GGGTAGGAAGAAGGCACCG 59.779 63.158 0.00 0.00 0.00 4.94
1847 1910 0.253327 CTGGGTAGGAAGAAGGCACC 59.747 60.000 0.00 0.00 0.00 5.01
1848 1911 3.863407 CTGGGTAGGAAGAAGGCAC 57.137 57.895 0.00 0.00 0.00 5.01
1862 1925 4.096003 CCAGTGCGTACCCCTGGG 62.096 72.222 5.50 5.50 41.69 4.45
1864 1927 1.340248 CTATACCAGTGCGTACCCCTG 59.660 57.143 0.00 0.00 0.00 4.45
1865 1928 1.700955 CTATACCAGTGCGTACCCCT 58.299 55.000 0.00 0.00 0.00 4.79
1866 1929 0.677842 CCTATACCAGTGCGTACCCC 59.322 60.000 0.00 0.00 0.00 4.95
1867 1930 0.033090 GCCTATACCAGTGCGTACCC 59.967 60.000 0.00 0.00 0.00 3.69
1868 1931 0.033090 GGCCTATACCAGTGCGTACC 59.967 60.000 0.00 0.00 0.00 3.34
1869 1932 0.748450 TGGCCTATACCAGTGCGTAC 59.252 55.000 3.32 0.00 33.75 3.67
1870 1933 3.210733 TGGCCTATACCAGTGCGTA 57.789 52.632 3.32 0.00 33.75 4.42
1871 1934 4.043859 TGGCCTATACCAGTGCGT 57.956 55.556 3.32 0.00 33.75 5.24
1877 1940 4.435977 AGGGATATTCTGGCCTATACCA 57.564 45.455 12.43 0.00 38.29 3.25
1878 1941 6.886178 TTTAGGGATATTCTGGCCTATACC 57.114 41.667 3.32 3.24 0.00 2.73
1903 1966 4.882559 TGGATTCTGGCCCATATCTTTTT 58.117 39.130 0.00 0.00 0.00 1.94
1904 1967 4.541250 TGGATTCTGGCCCATATCTTTT 57.459 40.909 0.00 0.00 0.00 2.27
1905 1968 4.218312 GTTGGATTCTGGCCCATATCTTT 58.782 43.478 0.00 0.00 31.66 2.52
1906 1969 3.437052 GGTTGGATTCTGGCCCATATCTT 60.437 47.826 0.00 0.00 31.66 2.40
1907 1970 2.108952 GGTTGGATTCTGGCCCATATCT 59.891 50.000 0.00 0.00 31.66 1.98
1908 1971 2.158475 TGGTTGGATTCTGGCCCATATC 60.158 50.000 0.00 0.00 31.66 1.63
1909 1972 1.858910 TGGTTGGATTCTGGCCCATAT 59.141 47.619 0.00 0.00 31.66 1.78
1910 1973 1.215173 CTGGTTGGATTCTGGCCCATA 59.785 52.381 0.00 0.00 31.66 2.74
1911 1974 0.032813 CTGGTTGGATTCTGGCCCAT 60.033 55.000 0.00 0.00 31.66 4.00
1912 1975 1.383799 CTGGTTGGATTCTGGCCCA 59.616 57.895 0.00 0.00 0.00 5.36
1913 1976 2.054453 GCTGGTTGGATTCTGGCCC 61.054 63.158 0.00 0.00 0.00 5.80
1914 1977 2.054453 GGCTGGTTGGATTCTGGCC 61.054 63.158 0.00 0.00 0.00 5.36
1915 1978 0.255890 TAGGCTGGTTGGATTCTGGC 59.744 55.000 0.00 0.00 0.00 4.85
1916 1979 2.173356 TGATAGGCTGGTTGGATTCTGG 59.827 50.000 0.00 0.00 0.00 3.86
1917 1980 3.565764 TGATAGGCTGGTTGGATTCTG 57.434 47.619 0.00 0.00 0.00 3.02
1918 1981 4.591321 TTTGATAGGCTGGTTGGATTCT 57.409 40.909 0.00 0.00 0.00 2.40
1919 1982 5.009410 CAGATTTGATAGGCTGGTTGGATTC 59.991 44.000 0.00 0.00 0.00 2.52
1920 1983 4.891756 CAGATTTGATAGGCTGGTTGGATT 59.108 41.667 0.00 0.00 0.00 3.01
1921 1984 4.166725 TCAGATTTGATAGGCTGGTTGGAT 59.833 41.667 0.00 0.00 0.00 3.41
1922 1985 3.523157 TCAGATTTGATAGGCTGGTTGGA 59.477 43.478 0.00 0.00 0.00 3.53
1923 1986 3.629398 GTCAGATTTGATAGGCTGGTTGG 59.371 47.826 0.00 0.00 35.39 3.77
1924 1987 4.095483 GTGTCAGATTTGATAGGCTGGTTG 59.905 45.833 0.00 0.00 35.39 3.77
1925 1988 4.265073 GTGTCAGATTTGATAGGCTGGTT 58.735 43.478 0.00 0.00 35.39 3.67
1926 1989 3.679917 CGTGTCAGATTTGATAGGCTGGT 60.680 47.826 0.00 0.00 35.39 4.00
1927 1990 2.868583 CGTGTCAGATTTGATAGGCTGG 59.131 50.000 0.00 0.00 35.39 4.85
1928 1991 3.525537 ACGTGTCAGATTTGATAGGCTG 58.474 45.455 0.00 0.00 34.77 4.85
1929 1992 3.895232 ACGTGTCAGATTTGATAGGCT 57.105 42.857 3.13 0.00 34.77 4.58
1930 1993 4.430007 TGTACGTGTCAGATTTGATAGGC 58.570 43.478 0.00 0.00 34.77 3.93
1931 1994 6.199154 GTGATGTACGTGTCAGATTTGATAGG 59.801 42.308 0.00 1.87 36.67 2.57
1932 1995 6.751888 TGTGATGTACGTGTCAGATTTGATAG 59.248 38.462 0.00 0.00 35.39 2.08
1933 1996 6.530181 GTGTGATGTACGTGTCAGATTTGATA 59.470 38.462 0.00 0.00 35.39 2.15
1934 1997 5.348724 GTGTGATGTACGTGTCAGATTTGAT 59.651 40.000 0.00 0.00 35.39 2.57
1935 1998 4.684242 GTGTGATGTACGTGTCAGATTTGA 59.316 41.667 0.00 0.00 0.00 2.69
1936 1999 4.447389 TGTGTGATGTACGTGTCAGATTTG 59.553 41.667 0.00 0.00 0.00 2.32
1937 2000 4.447724 GTGTGTGATGTACGTGTCAGATTT 59.552 41.667 0.00 0.00 0.00 2.17
1938 2001 3.987868 GTGTGTGATGTACGTGTCAGATT 59.012 43.478 0.00 0.00 0.00 2.40
1939 2002 3.575630 GTGTGTGATGTACGTGTCAGAT 58.424 45.455 0.00 0.00 0.00 2.90
1940 2003 2.287970 GGTGTGTGATGTACGTGTCAGA 60.288 50.000 0.00 0.00 0.00 3.27
1941 2004 2.058798 GGTGTGTGATGTACGTGTCAG 58.941 52.381 0.00 0.00 0.00 3.51
1942 2005 1.600912 CGGTGTGTGATGTACGTGTCA 60.601 52.381 0.00 0.00 0.00 3.58
1943 2006 1.057636 CGGTGTGTGATGTACGTGTC 58.942 55.000 0.00 0.00 0.00 3.67
1944 2007 0.942410 GCGGTGTGTGATGTACGTGT 60.942 55.000 0.00 0.00 0.00 4.49
1945 2008 0.666274 AGCGGTGTGTGATGTACGTG 60.666 55.000 0.00 0.00 0.00 4.49
1946 2009 0.388134 GAGCGGTGTGTGATGTACGT 60.388 55.000 0.00 0.00 0.00 3.57
1947 2010 0.388006 TGAGCGGTGTGTGATGTACG 60.388 55.000 0.00 0.00 0.00 3.67
1948 2011 1.790755 TTGAGCGGTGTGTGATGTAC 58.209 50.000 0.00 0.00 0.00 2.90
1949 2012 2.535012 TTTGAGCGGTGTGTGATGTA 57.465 45.000 0.00 0.00 0.00 2.29
1950 2013 1.603802 CTTTTGAGCGGTGTGTGATGT 59.396 47.619 0.00 0.00 0.00 3.06
1951 2014 1.872952 TCTTTTGAGCGGTGTGTGATG 59.127 47.619 0.00 0.00 0.00 3.07
1952 2015 2.254546 TCTTTTGAGCGGTGTGTGAT 57.745 45.000 0.00 0.00 0.00 3.06
1953 2016 2.031258 TTCTTTTGAGCGGTGTGTGA 57.969 45.000 0.00 0.00 0.00 3.58
1954 2017 2.842208 TTTCTTTTGAGCGGTGTGTG 57.158 45.000 0.00 0.00 0.00 3.82
1955 2018 3.507786 GTTTTTCTTTTGAGCGGTGTGT 58.492 40.909 0.00 0.00 0.00 3.72
1956 2019 2.857748 GGTTTTTCTTTTGAGCGGTGTG 59.142 45.455 0.00 0.00 0.00 3.82
1957 2020 2.758423 AGGTTTTTCTTTTGAGCGGTGT 59.242 40.909 0.00 0.00 0.00 4.16
1958 2021 3.436700 AGGTTTTTCTTTTGAGCGGTG 57.563 42.857 0.00 0.00 0.00 4.94
1959 2022 5.528870 CATTAGGTTTTTCTTTTGAGCGGT 58.471 37.500 0.00 0.00 0.00 5.68
1960 2023 4.385748 GCATTAGGTTTTTCTTTTGAGCGG 59.614 41.667 0.00 0.00 0.00 5.52
1961 2024 4.981674 TGCATTAGGTTTTTCTTTTGAGCG 59.018 37.500 0.00 0.00 0.00 5.03
1962 2025 6.646240 TGATGCATTAGGTTTTTCTTTTGAGC 59.354 34.615 0.00 0.00 0.00 4.26
1963 2026 7.652909 TGTGATGCATTAGGTTTTTCTTTTGAG 59.347 33.333 0.00 0.00 0.00 3.02
1964 2027 7.437862 GTGTGATGCATTAGGTTTTTCTTTTGA 59.562 33.333 0.00 0.00 0.00 2.69
1965 2028 7.307337 GGTGTGATGCATTAGGTTTTTCTTTTG 60.307 37.037 0.00 0.00 0.00 2.44
1966 2029 6.705825 GGTGTGATGCATTAGGTTTTTCTTTT 59.294 34.615 0.00 0.00 0.00 2.27
1967 2030 6.223120 GGTGTGATGCATTAGGTTTTTCTTT 58.777 36.000 0.00 0.00 0.00 2.52
1968 2031 5.279456 GGGTGTGATGCATTAGGTTTTTCTT 60.279 40.000 0.00 0.00 0.00 2.52
1969 2032 4.220602 GGGTGTGATGCATTAGGTTTTTCT 59.779 41.667 0.00 0.00 0.00 2.52
1970 2033 4.494484 GGGTGTGATGCATTAGGTTTTTC 58.506 43.478 0.00 0.00 0.00 2.29
1971 2034 3.260632 GGGGTGTGATGCATTAGGTTTTT 59.739 43.478 0.00 0.00 0.00 1.94
1972 2035 2.831526 GGGGTGTGATGCATTAGGTTTT 59.168 45.455 0.00 0.00 0.00 2.43
1973 2036 2.042979 AGGGGTGTGATGCATTAGGTTT 59.957 45.455 0.00 0.00 0.00 3.27
1974 2037 1.640670 AGGGGTGTGATGCATTAGGTT 59.359 47.619 0.00 0.00 0.00 3.50
1975 2038 1.064463 CAGGGGTGTGATGCATTAGGT 60.064 52.381 0.00 0.00 0.00 3.08
1976 2039 1.683943 CAGGGGTGTGATGCATTAGG 58.316 55.000 0.00 0.00 0.00 2.69
1977 2040 1.027357 GCAGGGGTGTGATGCATTAG 58.973 55.000 0.00 0.00 39.75 1.73
1978 2041 0.330941 TGCAGGGGTGTGATGCATTA 59.669 50.000 0.00 0.00 44.56 1.90
1979 2042 1.077086 TGCAGGGGTGTGATGCATT 59.923 52.632 0.00 0.00 44.56 3.56
1980 2043 2.765279 TGCAGGGGTGTGATGCAT 59.235 55.556 0.00 0.00 44.56 3.96
1982 2045 1.696063 AATATGCAGGGGTGTGATGC 58.304 50.000 0.00 0.00 40.40 3.91
1983 2046 4.464008 AGTTAATATGCAGGGGTGTGATG 58.536 43.478 0.00 0.00 0.00 3.07
1984 2047 4.796110 AGTTAATATGCAGGGGTGTGAT 57.204 40.909 0.00 0.00 0.00 3.06
1985 2048 5.702065 TTAGTTAATATGCAGGGGTGTGA 57.298 39.130 0.00 0.00 0.00 3.58
1986 2049 6.959639 AATTAGTTAATATGCAGGGGTGTG 57.040 37.500 0.00 0.00 0.00 3.82
1987 2050 8.279361 AGTTAATTAGTTAATATGCAGGGGTGT 58.721 33.333 0.00 0.00 32.76 4.16
1988 2051 8.691661 AGTTAATTAGTTAATATGCAGGGGTG 57.308 34.615 0.00 0.00 32.76 4.61
2072 2135 9.959749 GACTGAGATACAAAATTGGTGTTTTTA 57.040 29.630 0.73 0.00 0.00 1.52
2073 2136 8.474025 TGACTGAGATACAAAATTGGTGTTTTT 58.526 29.630 0.73 0.00 0.00 1.94
2074 2137 8.006298 TGACTGAGATACAAAATTGGTGTTTT 57.994 30.769 0.73 0.00 0.00 2.43
2075 2138 7.581213 TGACTGAGATACAAAATTGGTGTTT 57.419 32.000 0.73 0.00 0.00 2.83
2076 2139 7.765695 ATGACTGAGATACAAAATTGGTGTT 57.234 32.000 0.73 0.00 0.00 3.32
2085 2148 9.586435 CCGCATAATATATGACTGAGATACAAA 57.414 33.333 1.65 0.00 0.00 2.83
2086 2149 8.966868 TCCGCATAATATATGACTGAGATACAA 58.033 33.333 1.65 0.00 0.00 2.41
2087 2150 8.519799 TCCGCATAATATATGACTGAGATACA 57.480 34.615 1.65 0.00 0.00 2.29
2088 2151 7.593273 GCTCCGCATAATATATGACTGAGATAC 59.407 40.741 1.65 0.00 0.00 2.24
2089 2152 7.520614 CGCTCCGCATAATATATGACTGAGATA 60.521 40.741 1.65 0.00 0.00 1.98
2090 2153 6.511416 GCTCCGCATAATATATGACTGAGAT 58.489 40.000 1.65 0.00 0.00 2.75
2091 2154 5.449177 CGCTCCGCATAATATATGACTGAGA 60.449 44.000 1.65 0.00 0.00 3.27
2092 2155 4.737279 CGCTCCGCATAATATATGACTGAG 59.263 45.833 1.65 4.81 0.00 3.35
2093 2156 4.398044 TCGCTCCGCATAATATATGACTGA 59.602 41.667 1.65 0.00 0.00 3.41
2094 2157 4.672409 TCGCTCCGCATAATATATGACTG 58.328 43.478 1.65 0.00 0.00 3.51
2095 2158 4.983671 TCGCTCCGCATAATATATGACT 57.016 40.909 1.65 0.00 0.00 3.41
2096 2159 6.589830 AATTCGCTCCGCATAATATATGAC 57.410 37.500 1.65 0.00 0.00 3.06
2097 2160 7.119116 ACAAAATTCGCTCCGCATAATATATGA 59.881 33.333 1.65 0.00 0.00 2.15
2098 2161 7.243487 ACAAAATTCGCTCCGCATAATATATG 58.757 34.615 0.00 0.00 0.00 1.78
2099 2162 7.377766 ACAAAATTCGCTCCGCATAATATAT 57.622 32.000 0.00 0.00 0.00 0.86
2100 2163 6.795098 ACAAAATTCGCTCCGCATAATATA 57.205 33.333 0.00 0.00 0.00 0.86
2101 2164 5.689383 ACAAAATTCGCTCCGCATAATAT 57.311 34.783 0.00 0.00 0.00 1.28
2102 2165 6.795098 ATACAAAATTCGCTCCGCATAATA 57.205 33.333 0.00 0.00 0.00 0.98
2103 2166 5.689383 ATACAAAATTCGCTCCGCATAAT 57.311 34.783 0.00 0.00 0.00 1.28
2104 2167 5.493133 AATACAAAATTCGCTCCGCATAA 57.507 34.783 0.00 0.00 0.00 1.90
2105 2168 5.493133 AAATACAAAATTCGCTCCGCATA 57.507 34.783 0.00 0.00 0.00 3.14
2106 2169 4.370364 AAATACAAAATTCGCTCCGCAT 57.630 36.364 0.00 0.00 0.00 4.73
2107 2170 3.840890 AAATACAAAATTCGCTCCGCA 57.159 38.095 0.00 0.00 0.00 5.69
2108 2171 9.769093 ATATATAAAATACAAAATTCGCTCCGC 57.231 29.630 0.00 0.00 0.00 5.54
2160 2223 9.965824 GACCGATCCAAATGATAAAACAATAAT 57.034 29.630 0.00 0.00 32.41 1.28
2161 2224 8.410141 GGACCGATCCAAATGATAAAACAATAA 58.590 33.333 0.00 0.00 45.47 1.40
2162 2225 7.936584 GGACCGATCCAAATGATAAAACAATA 58.063 34.615 0.00 0.00 45.47 1.90
2163 2226 6.805713 GGACCGATCCAAATGATAAAACAAT 58.194 36.000 0.00 0.00 45.47 2.71
2164 2227 6.202516 GGACCGATCCAAATGATAAAACAA 57.797 37.500 0.00 0.00 45.47 2.83
2165 2228 5.828299 GGACCGATCCAAATGATAAAACA 57.172 39.130 0.00 0.00 45.47 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.