Multiple sequence alignment - TraesCS3D01G279900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G279900 chr3D 100.000 8518 0 0 1 8518 388338911 388330394 0.000000e+00 15730
1 TraesCS3D01G279900 chr3B 94.403 3770 127 44 4768 8516 504983092 504979386 0.000000e+00 5716
2 TraesCS3D01G279900 chr3B 90.530 1848 108 39 118 1930 504987603 504985788 0.000000e+00 2381
3 TraesCS3D01G279900 chr3B 90.390 1051 35 17 2891 3901 504984868 504983844 0.000000e+00 1321
4 TraesCS3D01G279900 chr3B 96.257 668 22 2 3914 4580 504983775 504983110 0.000000e+00 1092
5 TraesCS3D01G279900 chr3B 91.198 693 19 17 2151 2818 504985563 504984888 0.000000e+00 904
6 TraesCS3D01G279900 chr3B 93.069 202 10 3 1966 2164 504985789 504985589 8.360000e-75 292
7 TraesCS3D01G279900 chr3B 90.435 115 10 1 6 119 504987955 504987841 5.330000e-32 150
8 TraesCS3D01G279900 chr3A 95.729 3231 97 20 4798 8019 509422530 509419332 0.000000e+00 5164
9 TraesCS3D01G279900 chr3A 91.715 1207 39 26 746 1928 509428343 509427174 0.000000e+00 1618
10 TraesCS3D01G279900 chr3A 91.609 1013 40 19 3600 4580 509423568 509422569 0.000000e+00 1358
11 TraesCS3D01G279900 chr3A 88.058 896 39 20 1967 2826 509427172 509426309 0.000000e+00 1000
12 TraesCS3D01G279900 chr3A 89.253 763 43 15 1 749 509429262 509428525 0.000000e+00 918
13 TraesCS3D01G279900 chr3A 93.285 417 16 7 2899 3304 509426280 509425865 9.460000e-169 604
14 TraesCS3D01G279900 chr3A 88.608 395 20 15 8060 8443 509419251 509418871 2.800000e-124 457
15 TraesCS3D01G279900 chr3A 90.909 253 14 4 3356 3601 509424915 509424665 1.770000e-86 331
16 TraesCS3D01G279900 chr1A 79.669 423 73 12 5819 6238 533449579 533449167 8.360000e-75 292
17 TraesCS3D01G279900 chr5A 93.617 188 10 1 4578 4765 89027813 89027998 6.510000e-71 279
18 TraesCS3D01G279900 chr5A 92.593 189 12 1 4577 4765 48350681 48350867 3.920000e-68 270
19 TraesCS3D01G279900 chr7D 93.122 189 11 1 4577 4765 309281858 309281672 8.420000e-70 276
20 TraesCS3D01G279900 chr5D 92.063 189 13 2 4577 4764 243767023 243767210 1.820000e-66 265
21 TraesCS3D01G279900 chr5B 92.391 184 12 2 4583 4765 691428958 691428776 2.360000e-65 261
22 TraesCS3D01G279900 chr7A 91.053 190 15 1 4577 4766 567458060 567457873 1.100000e-63 255
23 TraesCS3D01G279900 chr7A 90.909 187 14 2 4577 4763 721781484 721781301 1.840000e-61 248
24 TraesCS3D01G279900 chr4A 93.976 166 10 0 4577 4742 464986442 464986607 1.420000e-62 252
25 TraesCS3D01G279900 chrUn 90.608 181 16 1 4583 4763 26407273 26407094 1.110000e-58 239
26 TraesCS3D01G279900 chr1D 82.379 227 38 2 6380 6604 436190714 436190488 6.750000e-46 196
27 TraesCS3D01G279900 chr1B 81.938 227 39 2 6380 6604 591111026 591110800 3.140000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G279900 chr3D 388330394 388338911 8517 True 15730.000000 15730 100.00000 1 8518 1 chr3D.!!$R1 8517
1 TraesCS3D01G279900 chr3B 504979386 504987955 8569 True 1693.714286 5716 92.32600 6 8516 7 chr3B.!!$R1 8510
2 TraesCS3D01G279900 chr3A 509418871 509429262 10391 True 1431.250000 5164 91.14575 1 8443 8 chr3A.!!$R1 8442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1440 0.037975 GCCGGACTACCTCGTGAAAA 60.038 55.000 5.05 0.00 0.00 2.29 F
1663 2170 0.033504 CGCGGAATGCATAGGTAGGT 59.966 55.000 0.00 0.00 46.97 3.08 F
2766 3384 0.101759 GGATTGAGGCGCGTACAGTA 59.898 55.000 8.43 0.00 0.00 2.74 F
4637 7380 0.244178 GGTGACAAGGAGGACGTCTC 59.756 60.000 16.46 10.65 41.71 3.36 F
4758 7501 0.037590 CCCCCACGGTGATTCTCAAA 59.962 55.000 10.28 0.00 0.00 2.69 F
5659 8403 0.110486 AGTGTCGCCCTTTGAATGGT 59.890 50.000 0.00 0.00 0.00 3.55 F
5929 8673 0.824759 AGAGAGTATTTTCCGCGGCT 59.175 50.000 23.51 10.89 0.00 5.52 F
7454 10205 1.065401 CTGGCACAAGAACTTGCGAAA 59.935 47.619 13.50 0.00 44.03 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2888 3511 0.039165 CTGCCAAAGAAAGGGAACGC 60.039 55.0 0.00 0.00 0.00 4.84 R
3646 6287 0.035458 GCTGTAGGTGGCACTGAACT 59.965 55.0 18.45 8.46 0.00 3.01 R
4644 7387 0.100861 GTGCAGAGAGGTAGGTACGC 59.899 60.0 0.00 0.00 0.00 4.42 R
5872 8616 0.950836 CACCAAGTTGCCGAACATGA 59.049 50.0 0.00 0.00 33.46 3.07 R
6015 8759 1.136828 ACAGAGCACAAAGGTACCCA 58.863 50.0 8.74 0.00 0.00 4.51 R
7454 10205 0.655733 CGTTGAACTCGTGGCAAAGT 59.344 50.0 0.00 0.00 0.00 2.66 R
7472 10223 0.673437 ATTTTGTGGTGCACTTCCCG 59.327 50.0 17.98 0.00 35.11 5.14 R
8495 11305 0.824759 GTACTCCATGGAGCTCGGTT 59.175 55.0 36.78 21.18 45.54 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 121 6.642131 CGATGCAATTTCTTCCAGAAAAAGAA 59.358 34.615 3.13 0.00 46.08 2.52
181 425 5.927115 GCCCCTCTCTTAATATCTTACGTTG 59.073 44.000 0.00 0.00 0.00 4.10
201 445 5.445407 CGTTGGGATTACACGTAAGAACATG 60.445 44.000 0.00 0.00 43.62 3.21
202 446 5.408880 TGGGATTACACGTAAGAACATGA 57.591 39.130 0.00 0.00 43.62 3.07
244 490 6.036083 CACCTTACATCATCAACGTTAGGAAG 59.964 42.308 13.45 6.00 34.00 3.46
323 573 7.440523 ACAAGGACAGAATCATCTTGTTAAC 57.559 36.000 0.00 0.00 43.48 2.01
386 637 1.407656 TTCCACGCTTCCTCCACTGT 61.408 55.000 0.00 0.00 0.00 3.55
387 638 1.071471 CCACGCTTCCTCCACTGTT 59.929 57.895 0.00 0.00 0.00 3.16
388 639 0.320374 CCACGCTTCCTCCACTGTTA 59.680 55.000 0.00 0.00 0.00 2.41
427 678 3.913573 GCGGTGTATGCGAGCGTG 61.914 66.667 0.00 0.00 36.70 5.34
439 690 0.094216 CGAGCGTGAACAGAATGCAG 59.906 55.000 0.00 0.00 42.53 4.41
456 707 2.954989 TGCAGTGCAAAATTCACCACTA 59.045 40.909 17.26 0.00 36.47 2.74
544 798 1.933853 CCGCGTTTCCCTCAAAGATAG 59.066 52.381 4.92 0.00 0.00 2.08
551 805 3.616956 TCCCTCAAAGATAGTGCACTG 57.383 47.619 29.57 12.36 0.00 3.66
555 809 2.602211 CTCAAAGATAGTGCACTGCTCG 59.398 50.000 29.57 18.38 0.00 5.03
579 833 0.530288 AGCCAGAAGAGCGAGAAGTC 59.470 55.000 0.00 0.00 34.64 3.01
587 841 5.914635 CAGAAGAGCGAGAAGTCTATCAATC 59.085 44.000 0.00 0.00 0.00 2.67
619 879 9.778741 TTCTACTATTTCAAAAAGAAGAGCTCA 57.221 29.630 17.77 0.00 37.57 4.26
621 881 7.446001 ACTATTTCAAAAAGAAGAGCTCAGG 57.554 36.000 17.77 0.00 37.57 3.86
622 882 4.574599 TTTCAAAAAGAAGAGCTCAGGC 57.425 40.909 17.77 4.37 37.57 4.85
655 915 1.816835 TGTAGTGTGGACTGTCGATCC 59.183 52.381 1.07 0.00 36.70 3.36
663 923 2.190578 CTGTCGATCCCCTTGCCC 59.809 66.667 0.00 0.00 0.00 5.36
692 952 1.439679 ACGAGATGAACCCGAAAAGC 58.560 50.000 0.00 0.00 0.00 3.51
734 994 4.133796 GCGCATTTCCCCCACTGC 62.134 66.667 0.30 0.00 0.00 4.40
839 1291 4.341826 CGACCTGTCGCGCATATATTGC 62.342 54.545 8.75 0.00 46.50 3.56
959 1429 4.849310 GCGCATTGGGCCGGACTA 62.849 66.667 7.57 0.00 40.31 2.59
968 1438 2.345760 GGCCGGACTACCTCGTGAA 61.346 63.158 5.05 0.00 0.00 3.18
969 1439 1.588082 GCCGGACTACCTCGTGAAA 59.412 57.895 5.05 0.00 0.00 2.69
970 1440 0.037975 GCCGGACTACCTCGTGAAAA 60.038 55.000 5.05 0.00 0.00 2.29
971 1441 1.992170 CCGGACTACCTCGTGAAAAG 58.008 55.000 0.00 0.00 0.00 2.27
972 1442 1.347320 CGGACTACCTCGTGAAAAGC 58.653 55.000 0.00 0.00 0.00 3.51
975 1445 0.669625 ACTACCTCGTGAAAAGCCGC 60.670 55.000 0.00 0.00 0.00 6.53
979 1449 2.586635 TCGTGAAAAGCCGCGTGT 60.587 55.556 4.92 0.00 40.53 4.49
980 1450 2.101209 CTCGTGAAAAGCCGCGTGTT 62.101 55.000 4.92 0.00 40.53 3.32
981 1451 1.721133 CGTGAAAAGCCGCGTGTTC 60.721 57.895 4.92 0.00 35.55 3.18
982 1452 1.721133 GTGAAAAGCCGCGTGTTCG 60.721 57.895 4.92 0.00 40.37 3.95
983 1453 2.174969 TGAAAAGCCGCGTGTTCGT 61.175 52.632 4.92 0.00 39.49 3.85
984 1454 1.010462 GAAAAGCCGCGTGTTCGTT 60.010 52.632 4.92 0.00 39.49 3.85
985 1455 1.259544 GAAAAGCCGCGTGTTCGTTG 61.260 55.000 4.92 0.00 39.49 4.10
986 1456 2.655952 AAAAGCCGCGTGTTCGTTGG 62.656 55.000 4.92 0.00 39.49 3.77
990 1460 4.973055 CGCGTGTTCGTTGGGGGA 62.973 66.667 0.00 0.00 39.49 4.81
991 1461 3.047877 GCGTGTTCGTTGGGGGAG 61.048 66.667 0.00 0.00 39.49 4.30
992 1462 2.738480 CGTGTTCGTTGGGGGAGA 59.262 61.111 0.00 0.00 0.00 3.71
993 1463 1.374252 CGTGTTCGTTGGGGGAGAG 60.374 63.158 0.00 0.00 0.00 3.20
994 1464 1.812686 CGTGTTCGTTGGGGGAGAGA 61.813 60.000 0.00 0.00 0.00 3.10
995 1465 0.613777 GTGTTCGTTGGGGGAGAGAT 59.386 55.000 0.00 0.00 0.00 2.75
996 1466 1.829222 GTGTTCGTTGGGGGAGAGATA 59.171 52.381 0.00 0.00 0.00 1.98
997 1467 1.829222 TGTTCGTTGGGGGAGAGATAC 59.171 52.381 0.00 0.00 0.00 2.24
1290 1797 3.437795 TCTTCCTCGTCGCGGTCC 61.438 66.667 6.13 0.00 0.00 4.46
1661 2168 2.061773 CTTCGCGGAATGCATAGGTAG 58.938 52.381 6.13 0.00 46.97 3.18
1663 2170 0.033504 CGCGGAATGCATAGGTAGGT 59.966 55.000 0.00 0.00 46.97 3.08
1664 2171 1.271379 CGCGGAATGCATAGGTAGGTA 59.729 52.381 0.00 0.00 46.97 3.08
1665 2172 2.685100 GCGGAATGCATAGGTAGGTAC 58.315 52.381 0.00 0.00 45.45 3.34
1688 2200 3.546543 CCGCCCGCCTCTCCATTA 61.547 66.667 0.00 0.00 0.00 1.90
1689 2201 2.029666 CGCCCGCCTCTCCATTAG 59.970 66.667 0.00 0.00 0.00 1.73
1690 2202 2.797278 CGCCCGCCTCTCCATTAGT 61.797 63.158 0.00 0.00 0.00 2.24
1691 2203 1.069935 GCCCGCCTCTCCATTAGTC 59.930 63.158 0.00 0.00 0.00 2.59
1692 2204 1.749033 CCCGCCTCTCCATTAGTCC 59.251 63.158 0.00 0.00 0.00 3.85
1693 2205 1.048724 CCCGCCTCTCCATTAGTCCA 61.049 60.000 0.00 0.00 0.00 4.02
1694 2206 1.051812 CCGCCTCTCCATTAGTCCAT 58.948 55.000 0.00 0.00 0.00 3.41
1695 2207 1.417890 CCGCCTCTCCATTAGTCCATT 59.582 52.381 0.00 0.00 0.00 3.16
1696 2208 2.158755 CCGCCTCTCCATTAGTCCATTT 60.159 50.000 0.00 0.00 0.00 2.32
1697 2209 3.134458 CGCCTCTCCATTAGTCCATTTC 58.866 50.000 0.00 0.00 0.00 2.17
1698 2210 3.134458 GCCTCTCCATTAGTCCATTTCG 58.866 50.000 0.00 0.00 0.00 3.46
1711 2223 1.354040 CATTTCGCTCTGCTCGAACT 58.646 50.000 0.00 0.00 44.34 3.01
1732 2244 7.362056 CGAACTGTATCCAAGGAATTCAAACAT 60.362 37.037 7.93 0.00 0.00 2.71
1761 2273 1.599047 CACCTTCGCAGGGATGACT 59.401 57.895 5.96 0.00 46.01 3.41
1779 2291 0.390472 CTGAGTCCAAGGAGTTCGCC 60.390 60.000 0.00 0.00 0.00 5.54
1929 2441 7.272244 TCTTCGACATGTATGTAATTCACCAT 58.728 34.615 0.00 0.00 41.95 3.55
1930 2442 7.438160 TCTTCGACATGTATGTAATTCACCATC 59.562 37.037 0.00 0.00 41.95 3.51
1931 2443 6.578023 TCGACATGTATGTAATTCACCATCA 58.422 36.000 0.00 0.00 41.95 3.07
1932 2444 6.701400 TCGACATGTATGTAATTCACCATCAG 59.299 38.462 0.00 0.00 41.95 2.90
1933 2445 6.564686 CGACATGTATGTAATTCACCATCAGC 60.565 42.308 0.00 0.00 41.95 4.26
1934 2446 6.359804 ACATGTATGTAATTCACCATCAGCT 58.640 36.000 0.00 0.00 39.68 4.24
1935 2447 7.508687 ACATGTATGTAATTCACCATCAGCTA 58.491 34.615 0.00 0.00 39.68 3.32
1936 2448 8.159447 ACATGTATGTAATTCACCATCAGCTAT 58.841 33.333 0.00 0.00 39.68 2.97
1937 2449 8.663025 CATGTATGTAATTCACCATCAGCTATC 58.337 37.037 0.00 0.00 0.00 2.08
1938 2450 7.966812 TGTATGTAATTCACCATCAGCTATCT 58.033 34.615 0.00 0.00 0.00 1.98
1939 2451 7.874528 TGTATGTAATTCACCATCAGCTATCTG 59.125 37.037 0.00 0.00 41.67 2.90
1940 2452 5.059161 TGTAATTCACCATCAGCTATCTGC 58.941 41.667 0.00 0.00 40.13 4.26
1953 2465 4.186856 GCTATCTGCTACTCCCAATCTC 57.813 50.000 0.00 0.00 38.95 2.75
1954 2466 3.056179 GCTATCTGCTACTCCCAATCTCC 60.056 52.174 0.00 0.00 38.95 3.71
1955 2467 1.794714 TCTGCTACTCCCAATCTCCC 58.205 55.000 0.00 0.00 0.00 4.30
1956 2468 1.008327 TCTGCTACTCCCAATCTCCCA 59.992 52.381 0.00 0.00 0.00 4.37
1957 2469 2.053244 CTGCTACTCCCAATCTCCCAT 58.947 52.381 0.00 0.00 0.00 4.00
1958 2470 2.441001 CTGCTACTCCCAATCTCCCATT 59.559 50.000 0.00 0.00 0.00 3.16
1959 2471 3.648067 CTGCTACTCCCAATCTCCCATTA 59.352 47.826 0.00 0.00 0.00 1.90
1960 2472 3.391296 TGCTACTCCCAATCTCCCATTAC 59.609 47.826 0.00 0.00 0.00 1.89
1961 2473 3.391296 GCTACTCCCAATCTCCCATTACA 59.609 47.826 0.00 0.00 0.00 2.41
1962 2474 4.503991 GCTACTCCCAATCTCCCATTACAG 60.504 50.000 0.00 0.00 0.00 2.74
1963 2475 3.464828 ACTCCCAATCTCCCATTACAGT 58.535 45.455 0.00 0.00 0.00 3.55
1964 2476 3.852578 ACTCCCAATCTCCCATTACAGTT 59.147 43.478 0.00 0.00 0.00 3.16
1965 2477 5.036916 ACTCCCAATCTCCCATTACAGTTA 58.963 41.667 0.00 0.00 0.00 2.24
1999 2512 8.162880 GTCTGTAATTCGATTTTACTGTCAGTG 58.837 37.037 16.03 0.00 33.07 3.66
2004 2517 2.345641 CGATTTTACTGTCAGTGAGCCG 59.654 50.000 16.03 8.60 0.00 5.52
2015 2528 0.597637 AGTGAGCCGTTTCGTCACAG 60.598 55.000 12.67 0.00 42.59 3.66
2122 2637 2.511218 ACACTCCATGCCCATGACTATT 59.489 45.455 9.73 0.00 41.20 1.73
2169 2723 8.149647 TGTTTTCAAACATTGCTATTTGAGGAT 58.850 29.630 0.79 0.00 43.66 3.24
2317 2876 7.260603 GCATTCTCCAGCACTTGTTAATTATT 58.739 34.615 0.00 0.00 0.00 1.40
2441 3020 2.435203 AAGAACCTGGGGGAAGTAGT 57.565 50.000 0.00 0.00 36.25 2.73
2499 3078 3.547746 AGTCGGTGAGCTAAACCAAAAA 58.452 40.909 16.28 0.00 37.57 1.94
2620 3199 4.299155 TCTTCTAGAACGCTTTGTGTGAG 58.701 43.478 0.00 0.00 0.00 3.51
2621 3200 3.026630 TCTAGAACGCTTTGTGTGAGG 57.973 47.619 0.00 0.00 0.00 3.86
2622 3201 2.069273 CTAGAACGCTTTGTGTGAGGG 58.931 52.381 0.00 0.00 0.00 4.30
2623 3202 1.166531 AGAACGCTTTGTGTGAGGGC 61.167 55.000 0.00 0.00 0.00 5.19
2626 3205 3.257933 GCTTTGTGTGAGGGCGAG 58.742 61.111 0.00 0.00 0.00 5.03
2627 3206 1.301716 GCTTTGTGTGAGGGCGAGA 60.302 57.895 0.00 0.00 0.00 4.04
2628 3207 1.294659 GCTTTGTGTGAGGGCGAGAG 61.295 60.000 0.00 0.00 0.00 3.20
2629 3208 0.671781 CTTTGTGTGAGGGCGAGAGG 60.672 60.000 0.00 0.00 0.00 3.69
2630 3209 2.111999 TTTGTGTGAGGGCGAGAGGG 62.112 60.000 0.00 0.00 0.00 4.30
2631 3210 4.459089 GTGTGAGGGCGAGAGGGC 62.459 72.222 0.00 0.00 41.35 5.19
2633 3212 3.474570 GTGAGGGCGAGAGGGCAT 61.475 66.667 0.00 0.00 44.56 4.40
2634 3213 2.688666 TGAGGGCGAGAGGGCATT 60.689 61.111 0.00 0.00 44.56 3.56
2635 3214 2.110006 GAGGGCGAGAGGGCATTC 59.890 66.667 0.00 0.00 44.56 2.67
2636 3215 3.468326 GAGGGCGAGAGGGCATTCC 62.468 68.421 0.00 0.00 44.56 3.01
2637 3216 4.918201 GGGCGAGAGGGCATTCCG 62.918 72.222 0.00 0.00 44.56 4.30
2638 3217 4.918201 GGCGAGAGGGCATTCCGG 62.918 72.222 0.00 0.00 41.52 5.14
2765 3383 1.153628 GGATTGAGGCGCGTACAGT 60.154 57.895 8.43 2.38 0.00 3.55
2766 3384 0.101759 GGATTGAGGCGCGTACAGTA 59.898 55.000 8.43 0.00 0.00 2.74
2826 3449 5.127356 TCCGTTGGTTTTGGAAAATGTTACT 59.873 36.000 0.00 0.00 0.00 2.24
2827 3450 5.460748 CCGTTGGTTTTGGAAAATGTTACTC 59.539 40.000 0.00 0.00 0.00 2.59
2829 3452 5.538849 TGGTTTTGGAAAATGTTACTCCC 57.461 39.130 0.00 0.00 0.00 4.30
2832 3455 5.279306 GGTTTTGGAAAATGTTACTCCCTCC 60.279 44.000 0.00 0.00 0.00 4.30
2833 3456 3.343941 TGGAAAATGTTACTCCCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
2834 3457 2.640826 TGGAAAATGTTACTCCCTCCGT 59.359 45.455 0.00 0.00 0.00 4.69
2837 3460 5.221884 TGGAAAATGTTACTCCCTCCGTAAA 60.222 40.000 0.00 0.00 0.00 2.01
2838 3461 5.353400 GGAAAATGTTACTCCCTCCGTAAAG 59.647 44.000 0.00 0.00 0.00 1.85
2839 3462 5.750352 AAATGTTACTCCCTCCGTAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
2841 3464 4.796038 TGTTACTCCCTCCGTAAAGAAG 57.204 45.455 0.00 0.00 0.00 2.85
2842 3465 4.154942 TGTTACTCCCTCCGTAAAGAAGT 58.845 43.478 0.00 0.00 0.00 3.01
2843 3466 5.324409 TGTTACTCCCTCCGTAAAGAAGTA 58.676 41.667 0.00 0.00 0.00 2.24
2844 3467 5.954150 TGTTACTCCCTCCGTAAAGAAGTAT 59.046 40.000 0.00 0.00 0.00 2.12
2846 3469 7.615365 TGTTACTCCCTCCGTAAAGAAGTATAA 59.385 37.037 0.00 0.00 0.00 0.98
2848 3471 6.430007 ACTCCCTCCGTAAAGAAGTATAAGA 58.570 40.000 0.00 0.00 0.00 2.10
2850 3473 7.014422 ACTCCCTCCGTAAAGAAGTATAAGATG 59.986 40.741 0.00 0.00 0.00 2.90
2851 3474 6.837568 TCCCTCCGTAAAGAAGTATAAGATGT 59.162 38.462 0.00 0.00 0.00 3.06
2852 3475 7.343833 TCCCTCCGTAAAGAAGTATAAGATGTT 59.656 37.037 0.00 0.00 0.00 2.71
2853 3476 7.985752 CCCTCCGTAAAGAAGTATAAGATGTTT 59.014 37.037 0.00 0.00 0.00 2.83
2854 3477 9.379791 CCTCCGTAAAGAAGTATAAGATGTTTT 57.620 33.333 0.00 0.00 0.00 2.43
2856 3479 9.932207 TCCGTAAAGAAGTATAAGATGTTTTGA 57.068 29.630 0.00 0.00 0.00 2.69
2866 3489 9.737427 AGTATAAGATGTTTTGATCAGAGTACG 57.263 33.333 0.00 0.00 0.00 3.67
2867 3490 9.517609 GTATAAGATGTTTTGATCAGAGTACGT 57.482 33.333 0.00 0.00 0.00 3.57
2868 3491 6.952935 AAGATGTTTTGATCAGAGTACGTC 57.047 37.500 0.00 4.44 0.00 4.34
2869 3492 6.025749 AGATGTTTTGATCAGAGTACGTCA 57.974 37.500 16.36 4.04 0.00 4.35
2870 3493 5.864474 AGATGTTTTGATCAGAGTACGTCAC 59.136 40.000 16.36 0.00 0.00 3.67
2871 3494 3.978855 TGTTTTGATCAGAGTACGTCACG 59.021 43.478 0.00 0.00 0.00 4.35
2872 3495 3.909776 TTTGATCAGAGTACGTCACGT 57.090 42.857 8.49 8.49 44.35 4.49
2873 3496 3.909776 TTGATCAGAGTACGTCACGTT 57.090 42.857 8.85 0.00 41.54 3.99
2874 3497 3.909776 TGATCAGAGTACGTCACGTTT 57.090 42.857 8.85 0.00 41.54 3.60
2875 3498 5.361135 TTGATCAGAGTACGTCACGTTTA 57.639 39.130 8.85 0.00 41.54 2.01
2876 3499 5.361135 TGATCAGAGTACGTCACGTTTAA 57.639 39.130 8.85 0.00 41.54 1.52
2877 3500 5.149273 TGATCAGAGTACGTCACGTTTAAC 58.851 41.667 8.85 0.00 41.54 2.01
2878 3501 4.818534 TCAGAGTACGTCACGTTTAACT 57.181 40.909 8.85 5.94 41.54 2.24
2879 3502 5.922739 TCAGAGTACGTCACGTTTAACTA 57.077 39.130 8.85 0.00 41.54 2.24
2880 3503 5.679906 TCAGAGTACGTCACGTTTAACTAC 58.320 41.667 8.85 0.00 41.54 2.73
2881 3504 5.466728 TCAGAGTACGTCACGTTTAACTACT 59.533 40.000 8.85 4.12 41.54 2.57
2882 3505 5.562998 CAGAGTACGTCACGTTTAACTACTG 59.437 44.000 8.85 11.51 41.54 2.74
2883 3506 5.466728 AGAGTACGTCACGTTTAACTACTGA 59.533 40.000 8.85 0.00 41.54 3.41
2884 3507 6.148480 AGAGTACGTCACGTTTAACTACTGAT 59.852 38.462 8.85 0.00 41.54 2.90
2885 3508 6.082338 AGTACGTCACGTTTAACTACTGATG 58.918 40.000 8.85 0.25 41.54 3.07
2886 3509 4.863491 ACGTCACGTTTAACTACTGATGT 58.137 39.130 0.00 6.42 36.35 3.06
2887 3510 5.284079 ACGTCACGTTTAACTACTGATGTT 58.716 37.500 0.00 0.00 36.35 2.71
2888 3511 5.174398 ACGTCACGTTTAACTACTGATGTTG 59.826 40.000 0.00 0.00 36.35 3.33
2889 3512 5.371629 GTCACGTTTAACTACTGATGTTGC 58.628 41.667 0.00 0.00 0.00 4.17
3112 3741 4.157289 CACTTCTTTGATTGCTGGTGCTAT 59.843 41.667 0.00 0.00 40.48 2.97
3113 3742 4.397417 ACTTCTTTGATTGCTGGTGCTATC 59.603 41.667 5.72 5.72 46.47 2.08
3222 3856 2.024176 TACTTCAGCCCAGAAGACCA 57.976 50.000 15.54 1.35 46.18 4.02
3282 3916 1.006922 GCAAAGCCAGTGGAGTTGC 60.007 57.895 25.54 25.54 37.04 4.17
3298 3932 2.110420 GCACCGGCAGGGGTATAC 59.890 66.667 7.09 0.00 44.83 1.47
3304 3938 3.516300 CACCGGCAGGGGTATACAATATA 59.484 47.826 8.08 0.00 43.47 0.86
3305 3939 3.773119 ACCGGCAGGGGTATACAATATAG 59.227 47.826 8.08 0.00 43.47 1.31
3306 3940 4.028131 CCGGCAGGGGTATACAATATAGA 58.972 47.826 5.01 0.00 0.00 1.98
3307 3941 4.099573 CCGGCAGGGGTATACAATATAGAG 59.900 50.000 5.01 0.00 0.00 2.43
3308 3942 4.441634 CGGCAGGGGTATACAATATAGAGC 60.442 50.000 5.01 0.00 0.00 4.09
3309 3943 4.141688 GGCAGGGGTATACAATATAGAGCC 60.142 50.000 5.01 3.37 0.00 4.70
3310 3944 4.441634 GCAGGGGTATACAATATAGAGCCG 60.442 50.000 5.01 0.00 0.00 5.52
3311 3945 4.710375 CAGGGGTATACAATATAGAGCCGT 59.290 45.833 5.01 0.00 0.00 5.68
3312 3946 5.889853 CAGGGGTATACAATATAGAGCCGTA 59.110 44.000 5.01 0.00 0.00 4.02
3324 3979 7.898014 ATATAGAGCCGTACCAATATCATCA 57.102 36.000 0.00 0.00 0.00 3.07
3350 4005 1.939974 TCTGTATCTCACGCATTGCC 58.060 50.000 2.41 0.00 0.00 4.52
3489 5024 3.357079 CCAACCACCTGCAGCGAC 61.357 66.667 8.66 0.00 0.00 5.19
3544 5083 0.916086 TGGTGGTATCCCATGGACAC 59.084 55.000 15.22 13.22 44.35 3.67
3577 5116 6.317140 CCATCATCATTTATATCGAGGTTGGG 59.683 42.308 0.00 0.00 30.42 4.12
3646 6287 2.966732 CGTTCCCCTGCCTGCCTAA 61.967 63.158 0.00 0.00 0.00 2.69
3647 6288 1.077429 GTTCCCCTGCCTGCCTAAG 60.077 63.158 0.00 0.00 0.00 2.18
3649 6290 1.140134 TTCCCCTGCCTGCCTAAGTT 61.140 55.000 0.00 0.00 0.00 2.66
3650 6291 1.077429 CCCCTGCCTGCCTAAGTTC 60.077 63.158 0.00 0.00 0.00 3.01
3651 6292 1.685224 CCCTGCCTGCCTAAGTTCA 59.315 57.895 0.00 0.00 0.00 3.18
3652 6293 0.393537 CCCTGCCTGCCTAAGTTCAG 60.394 60.000 0.00 0.00 0.00 3.02
3745 6399 5.904941 TGATTCTTCAGTTGTGCATTGTTT 58.095 33.333 0.00 0.00 0.00 2.83
3794 6448 3.251972 GGTCTAAGCAATCATTAGGCAGC 59.748 47.826 0.41 0.00 36.73 5.25
3795 6449 3.879295 GTCTAAGCAATCATTAGGCAGCA 59.121 43.478 0.00 0.00 35.41 4.41
3851 6509 6.015265 AGAGTAACCTGTTCTCTACCTTTGTC 60.015 42.308 9.01 0.00 36.88 3.18
3898 6610 5.222079 TGTACTGAACTTATGCTTGGTCA 57.778 39.130 0.00 0.00 0.00 4.02
4026 6768 5.405935 TCTGAGAAGTGCACTGCTATTTA 57.594 39.130 27.82 12.94 30.15 1.40
4027 6769 5.982356 TCTGAGAAGTGCACTGCTATTTAT 58.018 37.500 27.82 4.28 30.15 1.40
4490 7233 4.504858 ACACACGTATCATTTTCCTCTCC 58.495 43.478 0.00 0.00 0.00 3.71
4580 7323 4.761910 CACAGACGTGAATATGTGTAGC 57.238 45.455 0.00 0.00 46.80 3.58
4581 7324 4.173256 CACAGACGTGAATATGTGTAGCA 58.827 43.478 0.00 0.00 46.80 3.49
4582 7325 4.266265 CACAGACGTGAATATGTGTAGCAG 59.734 45.833 0.00 0.00 46.80 4.24
4583 7326 4.157840 ACAGACGTGAATATGTGTAGCAGA 59.842 41.667 0.00 0.00 0.00 4.26
4584 7327 4.500837 CAGACGTGAATATGTGTAGCAGAC 59.499 45.833 0.00 0.00 0.00 3.51
4585 7328 4.399618 AGACGTGAATATGTGTAGCAGACT 59.600 41.667 0.00 0.00 0.00 3.24
4587 7330 4.864806 ACGTGAATATGTGTAGCAGACTTG 59.135 41.667 0.00 0.00 0.00 3.16
4588 7331 4.268644 CGTGAATATGTGTAGCAGACTTGG 59.731 45.833 0.00 0.00 0.00 3.61
4590 7333 6.051717 GTGAATATGTGTAGCAGACTTGGAT 58.948 40.000 0.00 0.00 0.00 3.41
4591 7334 6.201806 GTGAATATGTGTAGCAGACTTGGATC 59.798 42.308 0.00 0.00 0.00 3.36
4593 7336 4.833478 ATGTGTAGCAGACTTGGATCTT 57.167 40.909 0.00 0.00 0.00 2.40
4594 7337 4.623932 TGTGTAGCAGACTTGGATCTTT 57.376 40.909 0.00 0.00 0.00 2.52
4595 7338 4.318332 TGTGTAGCAGACTTGGATCTTTG 58.682 43.478 0.00 0.00 0.00 2.77
4596 7339 3.686726 GTGTAGCAGACTTGGATCTTTGG 59.313 47.826 0.00 0.00 0.00 3.28
4597 7340 3.327757 TGTAGCAGACTTGGATCTTTGGT 59.672 43.478 0.00 0.00 0.00 3.67
4598 7341 3.064900 AGCAGACTTGGATCTTTGGTC 57.935 47.619 0.00 0.00 0.00 4.02
4599 7342 2.373169 AGCAGACTTGGATCTTTGGTCA 59.627 45.455 0.00 0.00 0.00 4.02
4600 7343 2.485814 GCAGACTTGGATCTTTGGTCAC 59.514 50.000 0.00 0.00 0.00 3.67
4601 7344 3.743521 CAGACTTGGATCTTTGGTCACA 58.256 45.455 0.00 0.00 0.00 3.58
4602 7345 3.499918 CAGACTTGGATCTTTGGTCACAC 59.500 47.826 0.00 0.00 0.00 3.82
4603 7346 2.814336 GACTTGGATCTTTGGTCACACC 59.186 50.000 0.00 0.00 39.22 4.16
4604 7347 1.806542 CTTGGATCTTTGGTCACACCG 59.193 52.381 0.00 0.00 42.58 4.94
4605 7348 0.762418 TGGATCTTTGGTCACACCGT 59.238 50.000 0.00 0.00 42.58 4.83
4606 7349 1.270625 TGGATCTTTGGTCACACCGTC 60.271 52.381 0.00 0.00 42.58 4.79
4607 7350 1.002087 GGATCTTTGGTCACACCGTCT 59.998 52.381 0.00 0.00 42.58 4.18
4608 7351 2.550208 GGATCTTTGGTCACACCGTCTT 60.550 50.000 0.00 0.00 42.58 3.01
4609 7352 1.948104 TCTTTGGTCACACCGTCTTG 58.052 50.000 0.00 0.00 42.58 3.02
4610 7353 1.208535 TCTTTGGTCACACCGTCTTGT 59.791 47.619 0.00 0.00 42.58 3.16
4611 7354 2.014128 CTTTGGTCACACCGTCTTGTT 58.986 47.619 0.00 0.00 42.58 2.83
4612 7355 1.374560 TTGGTCACACCGTCTTGTTG 58.625 50.000 0.00 0.00 42.58 3.33
4613 7356 0.537653 TGGTCACACCGTCTTGTTGA 59.462 50.000 0.00 0.00 42.58 3.18
4614 7357 1.140052 TGGTCACACCGTCTTGTTGAT 59.860 47.619 0.00 0.00 42.58 2.57
4615 7358 2.365941 TGGTCACACCGTCTTGTTGATA 59.634 45.455 0.00 0.00 42.58 2.15
4616 7359 2.735134 GGTCACACCGTCTTGTTGATAC 59.265 50.000 0.00 0.00 0.00 2.24
4617 7360 2.407361 GTCACACCGTCTTGTTGATACG 59.593 50.000 0.00 0.00 36.42 3.06
4622 7365 2.357327 CGTCTTGTTGATACGGGTGA 57.643 50.000 0.00 0.00 33.13 4.02
4623 7366 1.990563 CGTCTTGTTGATACGGGTGAC 59.009 52.381 0.00 0.00 33.13 3.67
4624 7367 2.608506 CGTCTTGTTGATACGGGTGACA 60.609 50.000 0.00 0.00 33.13 3.58
4625 7368 3.395639 GTCTTGTTGATACGGGTGACAA 58.604 45.455 0.00 0.00 0.00 3.18
4626 7369 3.432252 GTCTTGTTGATACGGGTGACAAG 59.568 47.826 7.93 7.93 45.17 3.16
4627 7370 2.465860 TGTTGATACGGGTGACAAGG 57.534 50.000 0.00 0.00 0.00 3.61
4628 7371 1.972075 TGTTGATACGGGTGACAAGGA 59.028 47.619 0.00 0.00 0.00 3.36
4629 7372 2.028476 TGTTGATACGGGTGACAAGGAG 60.028 50.000 0.00 0.00 0.00 3.69
4630 7373 1.191535 TGATACGGGTGACAAGGAGG 58.808 55.000 0.00 0.00 0.00 4.30
4631 7374 1.272816 TGATACGGGTGACAAGGAGGA 60.273 52.381 0.00 0.00 0.00 3.71
4632 7375 1.136500 GATACGGGTGACAAGGAGGAC 59.864 57.143 0.00 0.00 0.00 3.85
4633 7376 1.246056 TACGGGTGACAAGGAGGACG 61.246 60.000 0.00 0.00 0.00 4.79
4634 7377 2.571216 CGGGTGACAAGGAGGACGT 61.571 63.158 0.00 0.00 0.00 4.34
4635 7378 1.292541 GGGTGACAAGGAGGACGTC 59.707 63.158 7.13 7.13 0.00 4.34
4636 7379 1.186267 GGGTGACAAGGAGGACGTCT 61.186 60.000 16.46 0.90 0.00 4.18
4637 7380 0.244178 GGTGACAAGGAGGACGTCTC 59.756 60.000 16.46 10.65 41.71 3.36
4645 7388 3.063084 AGGACGTCTCCTCGTGGC 61.063 66.667 16.46 0.00 44.59 5.01
4646 7389 4.477975 GGACGTCTCCTCGTGGCG 62.478 72.222 16.46 0.00 44.21 5.69
4647 7390 3.735029 GACGTCTCCTCGTGGCGT 61.735 66.667 8.70 7.27 44.21 5.68
4648 7391 2.359107 ACGTCTCCTCGTGGCGTA 60.359 61.111 5.97 0.00 42.56 4.42
4649 7392 2.099831 CGTCTCCTCGTGGCGTAC 59.900 66.667 0.00 0.00 0.00 3.67
4650 7393 2.488820 GTCTCCTCGTGGCGTACC 59.511 66.667 0.00 0.00 0.00 3.34
4651 7394 2.045131 GTCTCCTCGTGGCGTACCT 61.045 63.158 0.00 0.00 36.63 3.08
4652 7395 0.745845 GTCTCCTCGTGGCGTACCTA 60.746 60.000 0.00 0.00 36.63 3.08
4653 7396 0.745845 TCTCCTCGTGGCGTACCTAC 60.746 60.000 0.00 0.00 36.63 3.18
4654 7397 1.722636 CTCCTCGTGGCGTACCTACC 61.723 65.000 0.00 0.00 36.63 3.18
4655 7398 1.751927 CCTCGTGGCGTACCTACCT 60.752 63.158 0.00 0.00 36.63 3.08
4656 7399 1.722636 CCTCGTGGCGTACCTACCTC 61.723 65.000 0.00 0.00 36.63 3.85
4657 7400 0.747283 CTCGTGGCGTACCTACCTCT 60.747 60.000 0.00 0.00 36.63 3.69
4658 7401 0.745845 TCGTGGCGTACCTACCTCTC 60.746 60.000 0.00 0.00 36.63 3.20
4659 7402 0.747283 CGTGGCGTACCTACCTCTCT 60.747 60.000 0.00 0.00 36.63 3.10
4660 7403 0.739561 GTGGCGTACCTACCTCTCTG 59.260 60.000 0.00 0.00 36.63 3.35
4661 7404 1.035932 TGGCGTACCTACCTCTCTGC 61.036 60.000 0.00 0.00 36.63 4.26
4662 7405 1.035932 GGCGTACCTACCTCTCTGCA 61.036 60.000 0.00 0.00 0.00 4.41
4663 7406 0.100861 GCGTACCTACCTCTCTGCAC 59.899 60.000 0.00 0.00 0.00 4.57
4664 7407 0.377554 CGTACCTACCTCTCTGCACG 59.622 60.000 0.00 0.00 0.00 5.34
4665 7408 1.747709 GTACCTACCTCTCTGCACGA 58.252 55.000 0.00 0.00 0.00 4.35
4666 7409 2.299521 GTACCTACCTCTCTGCACGAT 58.700 52.381 0.00 0.00 0.00 3.73
4667 7410 1.107114 ACCTACCTCTCTGCACGATG 58.893 55.000 0.00 0.00 0.00 3.84
4668 7411 0.249238 CCTACCTCTCTGCACGATGC 60.249 60.000 0.00 0.00 45.29 3.91
4678 7421 3.171987 CACGATGCACTGTGCCTC 58.828 61.111 28.17 25.32 44.23 4.70
4679 7422 1.375140 CACGATGCACTGTGCCTCT 60.375 57.895 28.17 14.02 44.23 3.69
4680 7423 1.375140 ACGATGCACTGTGCCTCTG 60.375 57.895 28.17 22.85 44.23 3.35
4681 7424 1.375140 CGATGCACTGTGCCTCTGT 60.375 57.895 28.17 10.35 44.23 3.41
4682 7425 0.108662 CGATGCACTGTGCCTCTGTA 60.109 55.000 28.17 10.38 44.23 2.74
4683 7426 1.672737 CGATGCACTGTGCCTCTGTAA 60.673 52.381 28.17 9.64 44.23 2.41
4684 7427 2.636830 GATGCACTGTGCCTCTGTAAT 58.363 47.619 28.17 14.02 44.23 1.89
4685 7428 2.099141 TGCACTGTGCCTCTGTAATC 57.901 50.000 28.17 0.00 44.23 1.75
4686 7429 1.625315 TGCACTGTGCCTCTGTAATCT 59.375 47.619 28.17 0.00 44.23 2.40
4687 7430 2.005451 GCACTGTGCCTCTGTAATCTG 58.995 52.381 21.78 0.00 37.42 2.90
4688 7431 2.625737 CACTGTGCCTCTGTAATCTGG 58.374 52.381 0.00 0.00 0.00 3.86
4689 7432 2.027745 CACTGTGCCTCTGTAATCTGGT 60.028 50.000 0.00 0.00 0.00 4.00
4690 7433 2.639839 ACTGTGCCTCTGTAATCTGGTT 59.360 45.455 0.00 0.00 0.00 3.67
4691 7434 3.265791 CTGTGCCTCTGTAATCTGGTTC 58.734 50.000 0.00 0.00 0.00 3.62
4692 7435 2.906389 TGTGCCTCTGTAATCTGGTTCT 59.094 45.455 0.00 0.00 0.00 3.01
4693 7436 3.265791 GTGCCTCTGTAATCTGGTTCTG 58.734 50.000 0.00 0.00 0.00 3.02
4694 7437 2.284190 GCCTCTGTAATCTGGTTCTGC 58.716 52.381 0.00 0.00 0.00 4.26
4695 7438 2.093235 GCCTCTGTAATCTGGTTCTGCT 60.093 50.000 0.00 0.00 0.00 4.24
4696 7439 3.529533 CCTCTGTAATCTGGTTCTGCTG 58.470 50.000 0.00 0.00 0.00 4.41
4697 7440 3.055530 CCTCTGTAATCTGGTTCTGCTGT 60.056 47.826 0.00 0.00 0.00 4.40
4698 7441 4.564406 CCTCTGTAATCTGGTTCTGCTGTT 60.564 45.833 0.00 0.00 0.00 3.16
4699 7442 4.973168 TCTGTAATCTGGTTCTGCTGTTT 58.027 39.130 0.00 0.00 0.00 2.83
4700 7443 6.109156 TCTGTAATCTGGTTCTGCTGTTTA 57.891 37.500 0.00 0.00 0.00 2.01
4701 7444 6.166279 TCTGTAATCTGGTTCTGCTGTTTAG 58.834 40.000 0.00 0.00 0.00 1.85
4702 7445 6.014584 TCTGTAATCTGGTTCTGCTGTTTAGA 60.015 38.462 0.00 0.00 0.00 2.10
4703 7446 5.932303 TGTAATCTGGTTCTGCTGTTTAGAC 59.068 40.000 0.00 0.00 0.00 2.59
4704 7447 4.623932 ATCTGGTTCTGCTGTTTAGACA 57.376 40.909 0.00 0.00 0.00 3.41
4715 7458 4.133856 CTGTTTAGACAGCCGTTTTGAG 57.866 45.455 0.00 0.00 46.08 3.02
4716 7459 3.537580 TGTTTAGACAGCCGTTTTGAGT 58.462 40.909 0.00 0.00 0.00 3.41
4717 7460 4.695396 TGTTTAGACAGCCGTTTTGAGTA 58.305 39.130 0.00 0.00 0.00 2.59
4718 7461 5.117584 TGTTTAGACAGCCGTTTTGAGTAA 58.882 37.500 0.00 0.00 0.00 2.24
4719 7462 5.761234 TGTTTAGACAGCCGTTTTGAGTAAT 59.239 36.000 0.00 0.00 0.00 1.89
4720 7463 6.930164 TGTTTAGACAGCCGTTTTGAGTAATA 59.070 34.615 0.00 0.00 0.00 0.98
4721 7464 7.604927 TGTTTAGACAGCCGTTTTGAGTAATAT 59.395 33.333 0.00 0.00 0.00 1.28
4722 7465 9.090692 GTTTAGACAGCCGTTTTGAGTAATATA 57.909 33.333 0.00 0.00 0.00 0.86
4723 7466 9.826574 TTTAGACAGCCGTTTTGAGTAATATAT 57.173 29.630 0.00 0.00 0.00 0.86
4724 7467 9.826574 TTAGACAGCCGTTTTGAGTAATATATT 57.173 29.630 2.97 2.97 0.00 1.28
4725 7468 8.366671 AGACAGCCGTTTTGAGTAATATATTC 57.633 34.615 0.00 0.00 0.00 1.75
4726 7469 7.985184 AGACAGCCGTTTTGAGTAATATATTCA 59.015 33.333 0.00 0.00 0.00 2.57
4727 7470 8.142994 ACAGCCGTTTTGAGTAATATATTCAG 57.857 34.615 0.00 0.00 0.00 3.02
4728 7471 7.226720 ACAGCCGTTTTGAGTAATATATTCAGG 59.773 37.037 0.00 0.00 0.00 3.86
4729 7472 7.226720 CAGCCGTTTTGAGTAATATATTCAGGT 59.773 37.037 0.00 0.00 0.00 4.00
4730 7473 7.226720 AGCCGTTTTGAGTAATATATTCAGGTG 59.773 37.037 0.00 0.00 0.00 4.00
4731 7474 7.519970 GCCGTTTTGAGTAATATATTCAGGTGG 60.520 40.741 0.00 0.00 0.00 4.61
4732 7475 7.041372 CCGTTTTGAGTAATATATTCAGGTGGG 60.041 40.741 0.00 0.00 0.00 4.61
4733 7476 7.041372 CGTTTTGAGTAATATATTCAGGTGGGG 60.041 40.741 0.00 0.00 0.00 4.96
4734 7477 7.699709 TTTGAGTAATATATTCAGGTGGGGA 57.300 36.000 0.00 0.00 0.00 4.81
4735 7478 6.935240 TGAGTAATATATTCAGGTGGGGAG 57.065 41.667 0.00 0.00 0.00 4.30
4736 7479 5.248477 TGAGTAATATATTCAGGTGGGGAGC 59.752 44.000 0.00 0.00 0.00 4.70
4737 7480 5.415961 AGTAATATATTCAGGTGGGGAGCT 58.584 41.667 0.00 0.00 0.00 4.09
4738 7481 4.917906 AATATATTCAGGTGGGGAGCTC 57.082 45.455 4.71 4.71 0.00 4.09
4739 7482 1.439543 ATATTCAGGTGGGGAGCTCC 58.560 55.000 25.59 25.59 0.00 4.70
4756 7499 3.399046 CCCCCACGGTGATTCTCA 58.601 61.111 10.28 0.00 0.00 3.27
4757 7500 1.682849 CCCCCACGGTGATTCTCAA 59.317 57.895 10.28 0.00 0.00 3.02
4758 7501 0.037590 CCCCCACGGTGATTCTCAAA 59.962 55.000 10.28 0.00 0.00 2.69
4759 7502 1.546773 CCCCCACGGTGATTCTCAAAA 60.547 52.381 10.28 0.00 0.00 2.44
4760 7503 2.235016 CCCCACGGTGATTCTCAAAAA 58.765 47.619 10.28 0.00 0.00 1.94
4796 7539 6.098409 CCAACTTAGAGAGACCTAAAGGCATA 59.902 42.308 0.00 0.00 39.32 3.14
4800 7543 9.030452 ACTTAGAGAGACCTAAAGGCATATATG 57.970 37.037 8.45 8.45 39.32 1.78
4835 7578 0.476338 TAGCCCTGTTGCCAACTCAA 59.524 50.000 9.30 0.00 0.00 3.02
5113 7857 5.799435 TGTGTGCATGATAATTGCTTTTACG 59.201 36.000 0.00 0.00 40.77 3.18
5296 8040 7.279981 TGGTACAGAAAATCGGTGAGATATTTG 59.720 37.037 0.00 0.00 38.98 2.32
5344 8088 4.575885 TGAAACGAGTTGGATTCCTAAGG 58.424 43.478 3.95 0.00 0.00 2.69
5423 8167 5.004361 TGTATCTAGGGGAGAGGATTCTG 57.996 47.826 0.00 0.00 37.70 3.02
5494 8238 9.831737 CAGTAAAAATACATCAGAAACTTGAGG 57.168 33.333 0.00 0.00 35.16 3.86
5658 8402 0.523072 CAGTGTCGCCCTTTGAATGG 59.477 55.000 0.00 0.00 0.00 3.16
5659 8403 0.110486 AGTGTCGCCCTTTGAATGGT 59.890 50.000 0.00 0.00 0.00 3.55
5660 8404 1.349688 AGTGTCGCCCTTTGAATGGTA 59.650 47.619 0.00 0.00 0.00 3.25
5661 8405 1.737793 GTGTCGCCCTTTGAATGGTAG 59.262 52.381 0.00 0.00 0.00 3.18
5662 8406 1.339631 TGTCGCCCTTTGAATGGTAGG 60.340 52.381 0.00 0.00 0.00 3.18
5663 8407 1.065709 GTCGCCCTTTGAATGGTAGGA 60.066 52.381 0.00 0.00 0.00 2.94
5673 8417 8.656806 CCCTTTGAATGGTAGGAGTATGTTATA 58.343 37.037 0.00 0.00 0.00 0.98
5690 8434 4.020573 TGTTATAGCTGTACACTTGTGGCT 60.021 41.667 9.63 9.63 35.32 4.75
5929 8673 0.824759 AGAGAGTATTTTCCGCGGCT 59.175 50.000 23.51 10.89 0.00 5.52
6002 8746 9.052759 AGACAACTAAGAAAACGTATGAACATT 57.947 29.630 0.00 0.00 0.00 2.71
6106 8850 2.760374 CTTCTGATCGATGGCCCTTAC 58.240 52.381 0.54 0.00 0.00 2.34
6619 9363 5.408604 GGGTAAGTACATCAAGTGACTGTTG 59.591 44.000 0.00 0.00 0.00 3.33
6635 9379 2.344950 TGTTGCTTTTGTTTGCAGTGG 58.655 42.857 0.00 0.00 40.46 4.00
6672 9416 5.016173 CAGAAATTCACAATAGGTTCCCCA 58.984 41.667 0.00 0.00 0.00 4.96
6674 9418 6.833416 CAGAAATTCACAATAGGTTCCCCATA 59.167 38.462 0.00 0.00 0.00 2.74
7090 9834 2.104281 ACCCGTATGCCAAGATAGGTTC 59.896 50.000 0.00 0.00 0.00 3.62
7096 9840 6.384224 CGTATGCCAAGATAGGTTCGTATAA 58.616 40.000 0.00 0.00 0.00 0.98
7104 9848 9.552114 CCAAGATAGGTTCGTATAAGTATTACG 57.448 37.037 0.00 0.00 38.43 3.18
7114 9858 7.236474 TCGTATAAGTATTACGTGCCTAATCG 58.764 38.462 0.00 0.00 38.26 3.34
7138 9882 6.196353 CGAACGTGATTTGATTTGTTGAAGTT 59.804 34.615 0.00 0.00 0.00 2.66
7267 10011 5.777850 TGTACTACACAAGTAAGACTGCA 57.222 39.130 0.00 0.00 42.37 4.41
7451 10202 1.165907 TCCTGGCACAAGAACTTGCG 61.166 55.000 13.50 6.37 44.03 4.85
7454 10205 1.065401 CTGGCACAAGAACTTGCGAAA 59.935 47.619 13.50 0.00 44.03 3.46
7472 10223 2.844122 AACTTTGCCACGAGTTCAAC 57.156 45.000 0.00 0.00 30.64 3.18
7478 10229 1.566018 GCCACGAGTTCAACGGGAAG 61.566 60.000 0.00 0.00 35.82 3.46
7649 10400 2.670934 CATAGCCATCGCCCCAGC 60.671 66.667 0.00 0.00 34.57 4.85
7778 10529 2.280186 CCGGTAGGCCTCGAATGC 60.280 66.667 9.68 0.00 0.00 3.56
7791 10542 1.021390 CGAATGCACAGAGACCACCC 61.021 60.000 0.00 0.00 0.00 4.61
7814 10568 2.614259 AGAAGACCTTGAGCTTCTCCA 58.386 47.619 0.00 0.00 45.64 3.86
7816 10570 5.192132 AGAAGACCTTGAGCTTCTCCAGC 62.192 52.174 0.00 0.00 45.64 4.85
7919 10673 3.770263 TTTTATCATGCAGCTGAGTGC 57.230 42.857 20.43 2.64 44.27 4.40
7941 10698 1.335496 TGACCAAGGCAAAAAGTACGC 59.665 47.619 0.00 0.00 0.00 4.42
7953 10710 5.560183 GCAAAAAGTACGCTTGTGTCTGTAT 60.560 40.000 6.52 0.00 34.71 2.29
8024 10781 8.029642 AGAAAAGGTATACTGATTCGTTTGTG 57.970 34.615 2.25 0.00 33.41 3.33
8026 10783 6.963049 AAGGTATACTGATTCGTTTGTGTC 57.037 37.500 2.25 0.00 0.00 3.67
8028 10785 6.100004 AGGTATACTGATTCGTTTGTGTCTG 58.900 40.000 2.25 0.00 0.00 3.51
8031 10788 3.131396 ACTGATTCGTTTGTGTCTGACC 58.869 45.455 5.17 0.00 0.00 4.02
8032 10789 3.130633 CTGATTCGTTTGTGTCTGACCA 58.869 45.455 5.17 0.14 0.00 4.02
8033 10790 3.536570 TGATTCGTTTGTGTCTGACCAA 58.463 40.909 5.17 6.49 0.00 3.67
8034 10791 3.559655 TGATTCGTTTGTGTCTGACCAAG 59.440 43.478 5.17 0.00 0.00 3.61
8035 10792 1.948104 TCGTTTGTGTCTGACCAAGG 58.052 50.000 5.17 2.22 0.00 3.61
8039 10796 2.136298 TTGTGTCTGACCAAGGCAAA 57.864 45.000 5.17 0.00 43.73 3.68
8040 10797 2.136298 TGTGTCTGACCAAGGCAAAA 57.864 45.000 5.17 0.00 43.73 2.44
8042 10799 2.426738 TGTGTCTGACCAAGGCAAAAAG 59.573 45.455 5.17 0.00 43.73 2.27
8043 10800 2.427095 GTGTCTGACCAAGGCAAAAAGT 59.573 45.455 5.17 0.00 43.73 2.66
8044 10801 3.630312 GTGTCTGACCAAGGCAAAAAGTA 59.370 43.478 5.17 0.00 43.73 2.24
8045 10802 3.630312 TGTCTGACCAAGGCAAAAAGTAC 59.370 43.478 5.17 0.00 37.65 2.73
8046 10803 2.875933 TCTGACCAAGGCAAAAAGTACG 59.124 45.455 0.00 0.00 0.00 3.67
8047 10804 2.616842 CTGACCAAGGCAAAAAGTACGT 59.383 45.455 0.00 0.00 0.00 3.57
8048 10805 3.018149 TGACCAAGGCAAAAAGTACGTT 58.982 40.909 0.00 0.00 0.00 3.99
8051 10808 3.193903 ACCAAGGCAAAAAGTACGTTTGT 59.806 39.130 19.72 6.26 38.09 2.83
8052 10809 3.549873 CCAAGGCAAAAAGTACGTTTGTG 59.450 43.478 19.72 14.77 38.09 3.33
8055 10812 3.692593 AGGCAAAAAGTACGTTTGTGTCT 59.307 39.130 19.72 16.48 42.58 3.41
8058 10815 5.447548 GGCAAAAAGTACGTTTGTGTCTGTA 60.448 40.000 19.72 0.00 35.37 2.74
8105 10902 0.813184 CCAAGGCCTGTATTGCTGTG 59.187 55.000 5.69 0.00 0.00 3.66
8107 10904 1.470098 CAAGGCCTGTATTGCTGTGTC 59.530 52.381 5.69 0.00 0.00 3.67
8108 10905 0.987294 AGGCCTGTATTGCTGTGTCT 59.013 50.000 3.11 0.00 0.00 3.41
8109 10906 2.187958 AGGCCTGTATTGCTGTGTCTA 58.812 47.619 3.11 0.00 0.00 2.59
8128 10925 6.019801 GTGTCTACTAATAATGCTCGTGTTGG 60.020 42.308 0.00 0.00 0.00 3.77
8137 10934 1.071542 TGCTCGTGTTGGAATCTGGAA 59.928 47.619 0.00 0.00 0.00 3.53
8158 10955 3.415212 ACCAACATGATTCACTCACCTG 58.585 45.455 0.00 0.00 36.48 4.00
8159 10956 2.163010 CCAACATGATTCACTCACCTGC 59.837 50.000 0.00 0.00 36.48 4.85
8160 10957 2.815503 CAACATGATTCACTCACCTGCA 59.184 45.455 0.00 0.00 36.48 4.41
8161 10958 2.430465 ACATGATTCACTCACCTGCAC 58.570 47.619 0.00 0.00 36.48 4.57
8162 10959 2.224597 ACATGATTCACTCACCTGCACA 60.225 45.455 0.00 0.00 36.48 4.57
8163 10960 2.636647 TGATTCACTCACCTGCACAA 57.363 45.000 0.00 0.00 0.00 3.33
8164 10961 2.497138 TGATTCACTCACCTGCACAAG 58.503 47.619 0.00 0.00 0.00 3.16
8165 10962 2.158769 TGATTCACTCACCTGCACAAGT 60.159 45.455 0.00 0.00 0.00 3.16
8181 10978 0.245539 AAGTGCACATTGCCATCTGC 59.754 50.000 21.04 0.00 44.23 4.26
8207 11004 3.938963 GCGAATGGTACTTTTGATCCTCA 59.061 43.478 0.00 0.00 0.00 3.86
8253 11050 0.541998 TCTGTGAGGAAGAAGGGCGA 60.542 55.000 0.00 0.00 0.00 5.54
8257 11054 3.724914 GAGGAAGAAGGGCGAGCGG 62.725 68.421 0.00 0.00 0.00 5.52
8258 11055 4.840005 GGAAGAAGGGCGAGCGGG 62.840 72.222 0.00 0.00 0.00 6.13
8465 11275 2.359531 TGATCGGGTTTTGTGTGGTTTC 59.640 45.455 0.00 0.00 0.00 2.78
8488 11298 0.111639 TGTGGGTTTTGAGTAGGGCC 59.888 55.000 0.00 0.00 0.00 5.80
8493 11303 2.299013 GGGTTTTGAGTAGGGCCTTTTG 59.701 50.000 13.45 0.00 0.00 2.44
8495 11305 3.227614 GTTTTGAGTAGGGCCTTTTGGA 58.772 45.455 13.45 0.00 44.07 3.53
8516 11328 1.043816 CCGAGCTCCATGGAGTACAT 58.956 55.000 36.32 22.74 43.70 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.959749 AATTAAGCATCAAACGAAAAACTAGAA 57.040 25.926 0.00 0.00 0.00 2.10
40 41 5.163405 ACAGCCGTATGAAGATCATGTAAGT 60.163 40.000 3.17 0.00 37.70 2.24
116 121 1.822990 CAATGCTCTGATGGGCTTGTT 59.177 47.619 0.00 0.00 0.00 2.83
181 425 6.292168 CGATTCATGTTCTTACGTGTAATCCC 60.292 42.308 0.00 0.00 41.20 3.85
201 445 1.175983 TGGTTGGTGTTGGGCGATTC 61.176 55.000 0.00 0.00 0.00 2.52
202 446 1.152652 TGGTTGGTGTTGGGCGATT 60.153 52.632 0.00 0.00 0.00 3.34
244 490 4.574599 AAAAGAACTGTTGCTGTGATCC 57.425 40.909 0.00 0.00 0.00 3.36
323 573 0.895530 TCTAGTTTGGGCTCTCCGTG 59.104 55.000 0.00 0.00 38.76 4.94
387 638 9.729023 CCGCATGATTGTTTTGAGTAAATAATA 57.271 29.630 0.00 0.00 37.58 0.98
388 639 8.250332 ACCGCATGATTGTTTTGAGTAAATAAT 58.750 29.630 0.00 0.00 39.40 1.28
427 678 4.746115 TGAATTTTGCACTGCATTCTGTTC 59.254 37.500 4.10 6.41 38.76 3.18
439 690 6.346838 GCTTCAATTAGTGGTGAATTTTGCAC 60.347 38.462 0.00 0.00 33.45 4.57
456 707 6.064717 AGACCACAGTTTTCTAGCTTCAATT 58.935 36.000 0.00 0.00 0.00 2.32
544 798 1.082496 GCTTCAACGAGCAGTGCAC 60.082 57.895 19.20 9.40 42.25 4.57
551 805 1.074752 CTCTTCTGGCTTCAACGAGC 58.925 55.000 0.00 0.00 41.96 5.03
555 809 1.074752 CTCGCTCTTCTGGCTTCAAC 58.925 55.000 0.00 0.00 0.00 3.18
625 885 3.961408 AGTCCACACTACACAGACTTTCT 59.039 43.478 0.00 0.00 34.17 2.52
626 886 4.051922 CAGTCCACACTACACAGACTTTC 58.948 47.826 0.00 0.00 35.67 2.62
627 887 3.451178 ACAGTCCACACTACACAGACTTT 59.549 43.478 0.00 0.00 35.67 2.66
633 893 1.682740 TCGACAGTCCACACTACACA 58.317 50.000 0.00 0.00 0.00 3.72
637 897 1.471119 GGGATCGACAGTCCACACTA 58.529 55.000 5.92 0.00 37.49 2.74
655 915 1.152777 TTCATATGGCGGGCAAGGG 60.153 57.895 8.78 0.68 0.00 3.95
663 923 2.476619 GGTTCATCTCGTTCATATGGCG 59.523 50.000 2.13 8.40 0.00 5.69
692 952 2.736682 GAATGACACGGGCGGTTCG 61.737 63.158 0.00 0.00 0.00 3.95
734 994 2.205307 CGGCTTAAGTACCGGAAGAG 57.795 55.000 9.46 0.00 45.74 2.85
839 1291 1.671901 GCAACGGGAGAGGGAGAGAG 61.672 65.000 0.00 0.00 0.00 3.20
840 1292 1.682684 GCAACGGGAGAGGGAGAGA 60.683 63.158 0.00 0.00 0.00 3.10
901 1353 1.834822 GACGGGGATCTCTGGGGAG 60.835 68.421 6.33 0.00 40.73 4.30
902 1354 2.282446 GACGGGGATCTCTGGGGA 59.718 66.667 6.33 0.00 0.00 4.81
908 1360 2.899044 CGAGCTCGACGGGGATCTC 61.899 68.421 32.06 0.00 43.02 2.75
959 1429 3.041940 CGCGGCTTTTCACGAGGT 61.042 61.111 0.00 0.00 0.00 3.85
968 1438 2.326550 CAACGAACACGCGGCTTT 59.673 55.556 12.47 0.00 35.12 3.51
969 1439 3.645975 CCAACGAACACGCGGCTT 61.646 61.111 12.47 0.00 35.12 4.35
975 1445 1.374252 CTCTCCCCCAACGAACACG 60.374 63.158 0.00 0.00 0.00 4.49
979 1449 1.492764 GGTATCTCTCCCCCAACGAA 58.507 55.000 0.00 0.00 0.00 3.85
980 1450 0.754217 CGGTATCTCTCCCCCAACGA 60.754 60.000 0.00 0.00 0.00 3.85
981 1451 0.754217 TCGGTATCTCTCCCCCAACG 60.754 60.000 0.00 0.00 0.00 4.10
982 1452 1.344763 CATCGGTATCTCTCCCCCAAC 59.655 57.143 0.00 0.00 0.00 3.77
983 1453 1.219469 TCATCGGTATCTCTCCCCCAA 59.781 52.381 0.00 0.00 0.00 4.12
984 1454 0.857675 TCATCGGTATCTCTCCCCCA 59.142 55.000 0.00 0.00 0.00 4.96
985 1455 1.551452 CTCATCGGTATCTCTCCCCC 58.449 60.000 0.00 0.00 0.00 5.40
986 1456 1.551452 CCTCATCGGTATCTCTCCCC 58.449 60.000 0.00 0.00 0.00 4.81
987 1457 1.551452 CCCTCATCGGTATCTCTCCC 58.449 60.000 0.00 0.00 0.00 4.30
988 1458 1.551452 CCCCTCATCGGTATCTCTCC 58.449 60.000 0.00 0.00 0.00 3.71
989 1459 0.892063 GCCCCTCATCGGTATCTCTC 59.108 60.000 0.00 0.00 0.00 3.20
990 1460 0.896019 CGCCCCTCATCGGTATCTCT 60.896 60.000 0.00 0.00 0.00 3.10
991 1461 1.587054 CGCCCCTCATCGGTATCTC 59.413 63.158 0.00 0.00 0.00 2.75
992 1462 1.908793 CCGCCCCTCATCGGTATCT 60.909 63.158 0.00 0.00 40.72 1.98
993 1463 2.657237 CCGCCCCTCATCGGTATC 59.343 66.667 0.00 0.00 40.72 2.24
994 1464 3.626924 GCCGCCCCTCATCGGTAT 61.627 66.667 2.58 0.00 46.79 2.73
1620 2127 2.442272 GAGCGGGAGAGGTAGCCA 60.442 66.667 0.00 0.00 0.00 4.75
1688 2200 0.459237 CGAGCAGAGCGAAATGGACT 60.459 55.000 0.00 0.00 0.00 3.85
1689 2201 0.458543 TCGAGCAGAGCGAAATGGAC 60.459 55.000 0.00 0.00 34.45 4.02
1690 2202 0.246360 TTCGAGCAGAGCGAAATGGA 59.754 50.000 0.00 0.00 43.82 3.41
1691 2203 2.754648 TTCGAGCAGAGCGAAATGG 58.245 52.632 0.00 0.00 43.82 3.16
1695 2207 0.879090 TACAGTTCGAGCAGAGCGAA 59.121 50.000 1.01 0.00 44.48 4.70
1696 2208 1.064208 GATACAGTTCGAGCAGAGCGA 59.936 52.381 1.01 0.00 35.06 4.93
1697 2209 1.471964 GATACAGTTCGAGCAGAGCG 58.528 55.000 1.01 0.00 35.06 5.03
1698 2210 1.135139 TGGATACAGTTCGAGCAGAGC 59.865 52.381 1.01 0.00 46.17 4.09
1744 2256 0.904865 TCAGTCATCCCTGCGAAGGT 60.905 55.000 9.15 0.00 32.32 3.50
1746 2258 0.534412 ACTCAGTCATCCCTGCGAAG 59.466 55.000 0.00 0.00 32.32 3.79
1747 2259 0.532573 GACTCAGTCATCCCTGCGAA 59.467 55.000 0.00 0.00 32.09 4.70
1748 2260 1.323271 GGACTCAGTCATCCCTGCGA 61.323 60.000 7.24 0.00 33.68 5.10
1761 2273 1.671742 GGCGAACTCCTTGGACTCA 59.328 57.895 0.00 0.00 0.00 3.41
1779 2291 1.734477 CGTGTCGAACAGCTCCAGG 60.734 63.158 0.00 0.00 0.00 4.45
1932 2444 3.056179 GGAGATTGGGAGTAGCAGATAGC 60.056 52.174 0.00 0.00 46.19 2.97
1933 2445 3.513515 GGGAGATTGGGAGTAGCAGATAG 59.486 52.174 0.00 0.00 0.00 2.08
1934 2446 3.116746 TGGGAGATTGGGAGTAGCAGATA 60.117 47.826 0.00 0.00 0.00 1.98
1935 2447 2.334023 GGGAGATTGGGAGTAGCAGAT 58.666 52.381 0.00 0.00 0.00 2.90
1936 2448 1.008327 TGGGAGATTGGGAGTAGCAGA 59.992 52.381 0.00 0.00 0.00 4.26
1937 2449 1.500474 TGGGAGATTGGGAGTAGCAG 58.500 55.000 0.00 0.00 0.00 4.24
1938 2450 2.196742 ATGGGAGATTGGGAGTAGCA 57.803 50.000 0.00 0.00 0.00 3.49
1939 2451 3.391296 TGTAATGGGAGATTGGGAGTAGC 59.609 47.826 0.00 0.00 0.00 3.58
1940 2452 4.656112 ACTGTAATGGGAGATTGGGAGTAG 59.344 45.833 0.00 0.00 0.00 2.57
1941 2453 4.631234 ACTGTAATGGGAGATTGGGAGTA 58.369 43.478 0.00 0.00 0.00 2.59
1942 2454 3.464828 ACTGTAATGGGAGATTGGGAGT 58.535 45.455 0.00 0.00 0.00 3.85
1943 2455 4.510167 AACTGTAATGGGAGATTGGGAG 57.490 45.455 0.00 0.00 0.00 4.30
1944 2456 6.590656 AATAACTGTAATGGGAGATTGGGA 57.409 37.500 0.00 0.00 0.00 4.37
1945 2457 8.163408 TGATAATAACTGTAATGGGAGATTGGG 58.837 37.037 0.00 0.00 0.00 4.12
1946 2458 9.573166 TTGATAATAACTGTAATGGGAGATTGG 57.427 33.333 0.00 0.00 0.00 3.16
1950 2462 9.213777 AGACTTGATAATAACTGTAATGGGAGA 57.786 33.333 0.00 0.00 0.00 3.71
1951 2463 9.265901 CAGACTTGATAATAACTGTAATGGGAG 57.734 37.037 0.00 0.00 0.00 4.30
1952 2464 8.768397 ACAGACTTGATAATAACTGTAATGGGA 58.232 33.333 0.00 0.00 36.94 4.37
1953 2465 8.964476 ACAGACTTGATAATAACTGTAATGGG 57.036 34.615 0.00 0.00 36.94 4.00
1999 2512 1.992170 ATACTGTGACGAAACGGCTC 58.008 50.000 0.00 0.00 35.04 4.70
2004 2517 4.146443 GCAAGCAAAATACTGTGACGAAAC 59.854 41.667 0.00 0.00 0.00 2.78
2015 2528 9.321590 GATTGAAATTGAAAGCAAGCAAAATAC 57.678 29.630 0.00 0.00 37.45 1.89
2122 2637 2.282180 GGGAAAGGCAAGCACGGA 60.282 61.111 0.00 0.00 0.00 4.69
2169 2723 7.068593 CCAAAGCCTAAATGATCAGATTTGGTA 59.931 37.037 23.41 0.11 39.37 3.25
2317 2876 0.039180 TCCTCTGGAAGCACGGAGTA 59.961 55.000 9.96 0.00 41.61 2.59
2417 2996 6.218053 ACTACTTCCCCCAGGTTCTTAATAT 58.782 40.000 0.00 0.00 0.00 1.28
2441 3020 2.813754 ACCACAGCTTCTTACGTACGTA 59.186 45.455 23.60 23.60 0.00 3.57
2499 3078 1.532604 TTGGTGAGACGCGGAGATGT 61.533 55.000 12.47 0.00 0.00 3.06
2620 3199 4.918201 CGGAATGCCCTCTCGCCC 62.918 72.222 0.00 0.00 0.00 6.13
2621 3200 4.918201 CCGGAATGCCCTCTCGCC 62.918 72.222 0.00 0.00 0.00 5.54
2623 3202 4.918201 GGCCGGAATGCCCTCTCG 62.918 72.222 5.05 0.00 46.11 4.04
2640 3219 4.473520 CACCTACTGCCTGGCCGG 62.474 72.222 17.53 13.38 0.00 6.13
2641 3220 3.376935 CTCACCTACTGCCTGGCCG 62.377 68.421 17.53 12.95 0.00 6.13
2753 3371 2.707849 CCCTGTACTGTACGCGCCT 61.708 63.158 5.73 0.00 0.00 5.52
2792 3410 3.726291 AAACCAACGGAAAACTGATGG 57.274 42.857 0.00 0.00 0.00 3.51
2826 3449 6.837568 ACATCTTATACTTCTTTACGGAGGGA 59.162 38.462 0.00 0.00 0.00 4.20
2827 3450 7.052142 ACATCTTATACTTCTTTACGGAGGG 57.948 40.000 0.00 0.00 0.00 4.30
2841 3464 9.517609 ACGTACTCTGATCAAAACATCTTATAC 57.482 33.333 0.00 0.00 0.00 1.47
2842 3465 9.731819 GACGTACTCTGATCAAAACATCTTATA 57.268 33.333 0.00 0.00 0.00 0.98
2843 3466 8.251026 TGACGTACTCTGATCAAAACATCTTAT 58.749 33.333 0.00 0.00 0.00 1.73
2844 3467 7.541091 GTGACGTACTCTGATCAAAACATCTTA 59.459 37.037 0.00 0.00 0.00 2.10
2846 3469 5.864474 GTGACGTACTCTGATCAAAACATCT 59.136 40.000 0.00 0.00 0.00 2.90
2848 3471 4.621460 CGTGACGTACTCTGATCAAAACAT 59.379 41.667 0.00 0.00 0.00 2.71
2850 3473 3.979495 ACGTGACGTACTCTGATCAAAAC 59.021 43.478 9.69 0.00 38.73 2.43
2851 3474 4.233123 ACGTGACGTACTCTGATCAAAA 57.767 40.909 9.69 0.00 38.73 2.44
2852 3475 3.909776 ACGTGACGTACTCTGATCAAA 57.090 42.857 9.69 0.00 38.73 2.69
2853 3476 3.909776 AACGTGACGTACTCTGATCAA 57.090 42.857 12.37 0.00 39.99 2.57
2854 3477 3.909776 AAACGTGACGTACTCTGATCA 57.090 42.857 12.37 0.00 39.99 2.92
2855 3478 5.388944 AGTTAAACGTGACGTACTCTGATC 58.611 41.667 12.37 0.00 39.99 2.92
2856 3479 5.368256 AGTTAAACGTGACGTACTCTGAT 57.632 39.130 12.37 0.00 39.99 2.90
2857 3480 4.818534 AGTTAAACGTGACGTACTCTGA 57.181 40.909 12.37 0.00 39.99 3.27
2858 3481 5.562998 CAGTAGTTAAACGTGACGTACTCTG 59.437 44.000 12.37 15.28 39.99 3.35
2859 3482 5.466728 TCAGTAGTTAAACGTGACGTACTCT 59.533 40.000 12.37 10.27 39.99 3.24
2860 3483 5.679906 TCAGTAGTTAAACGTGACGTACTC 58.320 41.667 12.37 6.04 39.99 2.59
2861 3484 5.673337 TCAGTAGTTAAACGTGACGTACT 57.327 39.130 12.37 14.12 39.99 2.73
2862 3485 5.853282 ACATCAGTAGTTAAACGTGACGTAC 59.147 40.000 12.37 6.19 39.99 3.67
2863 3486 6.000891 ACATCAGTAGTTAAACGTGACGTA 57.999 37.500 12.37 0.00 39.99 3.57
2864 3487 4.863491 ACATCAGTAGTTAAACGTGACGT 58.137 39.130 4.10 4.10 43.97 4.34
2865 3488 5.595993 CAACATCAGTAGTTAAACGTGACG 58.404 41.667 2.24 2.24 0.00 4.35
2866 3489 5.371629 GCAACATCAGTAGTTAAACGTGAC 58.628 41.667 0.00 0.00 0.00 3.67
2867 3490 4.149221 CGCAACATCAGTAGTTAAACGTGA 59.851 41.667 0.00 0.00 0.00 4.35
2868 3491 4.084745 ACGCAACATCAGTAGTTAAACGTG 60.085 41.667 0.00 0.00 33.74 4.49
2869 3492 4.053295 ACGCAACATCAGTAGTTAAACGT 58.947 39.130 0.00 0.00 31.67 3.99
2870 3493 4.640805 ACGCAACATCAGTAGTTAAACG 57.359 40.909 0.00 0.00 0.00 3.60
2871 3494 5.379827 GGAACGCAACATCAGTAGTTAAAC 58.620 41.667 0.00 0.00 0.00 2.01
2872 3495 4.453136 GGGAACGCAACATCAGTAGTTAAA 59.547 41.667 0.00 0.00 0.00 1.52
2873 3496 3.998341 GGGAACGCAACATCAGTAGTTAA 59.002 43.478 0.00 0.00 0.00 2.01
2874 3497 3.259876 AGGGAACGCAACATCAGTAGTTA 59.740 43.478 0.00 0.00 0.00 2.24
2875 3498 2.038557 AGGGAACGCAACATCAGTAGTT 59.961 45.455 0.00 0.00 0.00 2.24
2876 3499 1.623811 AGGGAACGCAACATCAGTAGT 59.376 47.619 0.00 0.00 0.00 2.73
2877 3500 2.386661 AGGGAACGCAACATCAGTAG 57.613 50.000 0.00 0.00 0.00 2.57
2878 3501 2.851263 AAGGGAACGCAACATCAGTA 57.149 45.000 0.00 0.00 0.00 2.74
2879 3502 1.880027 GAAAGGGAACGCAACATCAGT 59.120 47.619 0.00 0.00 0.00 3.41
2880 3503 2.154462 AGAAAGGGAACGCAACATCAG 58.846 47.619 0.00 0.00 0.00 2.90
2881 3504 2.270352 AGAAAGGGAACGCAACATCA 57.730 45.000 0.00 0.00 0.00 3.07
2882 3505 3.308530 CAAAGAAAGGGAACGCAACATC 58.691 45.455 0.00 0.00 0.00 3.06
2883 3506 2.035832 CCAAAGAAAGGGAACGCAACAT 59.964 45.455 0.00 0.00 0.00 2.71
2884 3507 1.407258 CCAAAGAAAGGGAACGCAACA 59.593 47.619 0.00 0.00 0.00 3.33
2885 3508 1.868109 GCCAAAGAAAGGGAACGCAAC 60.868 52.381 0.00 0.00 0.00 4.17
2886 3509 0.387565 GCCAAAGAAAGGGAACGCAA 59.612 50.000 0.00 0.00 0.00 4.85
2887 3510 0.753479 TGCCAAAGAAAGGGAACGCA 60.753 50.000 0.00 0.00 0.00 5.24
2888 3511 0.039165 CTGCCAAAGAAAGGGAACGC 60.039 55.000 0.00 0.00 0.00 4.84
2889 3512 1.604604 TCTGCCAAAGAAAGGGAACG 58.395 50.000 0.00 0.00 29.54 3.95
3148 3777 6.595326 AGAGCATGATCTCATTGTTTACGAAA 59.405 34.615 7.89 0.00 35.59 3.46
3272 3906 3.872603 TGCCGGTGCAACTCCACT 61.873 61.111 1.90 0.00 46.66 4.00
3282 3916 0.472471 ATTGTATACCCCTGCCGGTG 59.528 55.000 1.90 0.00 36.56 4.94
3298 3932 8.197439 TGATGATATTGGTACGGCTCTATATTG 58.803 37.037 0.00 0.00 0.00 1.90
3304 3938 5.489792 AATGATGATATTGGTACGGCTCT 57.510 39.130 0.00 0.00 0.00 4.09
3305 3939 6.560253 AAAATGATGATATTGGTACGGCTC 57.440 37.500 0.00 0.00 0.00 4.70
3306 3940 6.959639 AAAAATGATGATATTGGTACGGCT 57.040 33.333 0.00 0.00 0.00 5.52
3307 3941 8.730680 AGATAAAAATGATGATATTGGTACGGC 58.269 33.333 0.00 0.00 0.00 5.68
3324 3979 7.134815 GCAATGCGTGAGATACAGATAAAAAT 58.865 34.615 0.00 0.00 0.00 1.82
3335 3990 1.227527 CCCGGCAATGCGTGAGATA 60.228 57.895 0.00 0.00 0.00 1.98
3455 4990 2.037847 GGGCCCTTCAATGTGGCT 59.962 61.111 17.04 0.00 44.71 4.75
3489 5024 3.067040 TCCATCGATTTCAATGGTGCATG 59.933 43.478 0.00 0.00 42.57 4.06
3544 5083 8.043113 TCGATATAAATGATGATGGGGAAGAAG 58.957 37.037 0.00 0.00 0.00 2.85
3577 5116 2.046507 CTGGTCCACAGCTGCTCC 60.047 66.667 15.27 11.51 40.97 4.70
3646 6287 0.035458 GCTGTAGGTGGCACTGAACT 59.965 55.000 18.45 8.46 0.00 3.01
3647 6288 0.955919 GGCTGTAGGTGGCACTGAAC 60.956 60.000 18.45 13.17 0.00 3.18
3649 6290 2.592993 GGGCTGTAGGTGGCACTGA 61.593 63.158 18.45 2.50 0.00 3.41
3650 6291 2.045926 GGGCTGTAGGTGGCACTG 60.046 66.667 18.45 4.41 0.00 3.66
3651 6292 3.706373 CGGGCTGTAGGTGGCACT 61.706 66.667 18.45 6.21 0.00 4.40
3652 6293 3.952628 GACGGGCTGTAGGTGGCAC 62.953 68.421 9.70 9.70 0.00 5.01
3681 6332 1.006337 CGGTTCGGTGGTAACGGAA 60.006 57.895 0.00 0.00 41.70 4.30
3745 6399 0.837272 AAGGGATAAGCTTGCGCCTA 59.163 50.000 9.86 0.00 36.60 3.93
3766 6420 2.698855 TGATTGCTTAGACCAGCTCC 57.301 50.000 0.00 0.00 40.79 4.70
3794 6448 6.042552 AGTCTACATTCCTATGGGTCTTCATG 59.957 42.308 0.00 0.00 36.01 3.07
3795 6449 6.042552 CAGTCTACATTCCTATGGGTCTTCAT 59.957 42.308 0.00 0.00 36.01 2.57
3851 6509 5.292101 ACAGTTCAGACTTCAGAAACGAAAG 59.708 40.000 0.00 0.00 32.54 2.62
3898 6610 9.720769 AACACTTACATTAGCATTACTTACAGT 57.279 29.630 0.00 0.00 0.00 3.55
3995 6737 4.022416 AGTGCACTTCTCAGAAGTCAGTAG 60.022 45.833 17.71 7.25 0.00 2.57
4228 6970 4.202182 CCAGCCATTATTCCAATCCACAAG 60.202 45.833 0.00 0.00 0.00 3.16
4546 7289 1.404315 CGTCTGTGAGGGCCTCTAAAC 60.404 57.143 32.28 22.75 0.00 2.01
4572 7315 4.833478 AAGATCCAAGTCTGCTACACAT 57.167 40.909 0.00 0.00 0.00 3.21
4580 7323 3.499918 GTGTGACCAAAGATCCAAGTCTG 59.500 47.826 0.00 0.00 0.00 3.51
4581 7324 3.496870 GGTGTGACCAAAGATCCAAGTCT 60.497 47.826 0.00 0.00 38.42 3.24
4582 7325 2.814336 GGTGTGACCAAAGATCCAAGTC 59.186 50.000 0.00 0.00 38.42 3.01
4583 7326 2.810400 CGGTGTGACCAAAGATCCAAGT 60.810 50.000 0.00 0.00 38.47 3.16
4584 7327 1.806542 CGGTGTGACCAAAGATCCAAG 59.193 52.381 0.00 0.00 38.47 3.61
4585 7328 1.142060 ACGGTGTGACCAAAGATCCAA 59.858 47.619 0.00 0.00 38.47 3.53
4587 7330 1.002087 AGACGGTGTGACCAAAGATCC 59.998 52.381 0.00 0.00 38.47 3.36
4588 7331 2.457366 AGACGGTGTGACCAAAGATC 57.543 50.000 0.00 0.00 38.47 2.75
4590 7333 1.208535 ACAAGACGGTGTGACCAAAGA 59.791 47.619 0.00 0.00 38.47 2.52
4591 7334 1.663695 ACAAGACGGTGTGACCAAAG 58.336 50.000 0.00 0.00 38.47 2.77
4593 7336 1.066071 TCAACAAGACGGTGTGACCAA 60.066 47.619 0.00 0.00 38.47 3.67
4594 7337 0.537653 TCAACAAGACGGTGTGACCA 59.462 50.000 0.00 0.00 38.47 4.02
4595 7338 1.878953 ATCAACAAGACGGTGTGACC 58.121 50.000 0.00 0.00 34.05 4.02
4596 7339 2.407361 CGTATCAACAAGACGGTGTGAC 59.593 50.000 0.00 0.00 33.01 3.67
4597 7340 2.668250 CGTATCAACAAGACGGTGTGA 58.332 47.619 0.00 0.00 33.01 3.58
4603 7346 1.990563 GTCACCCGTATCAACAAGACG 59.009 52.381 0.00 0.00 36.36 4.18
4604 7347 3.034721 TGTCACCCGTATCAACAAGAC 57.965 47.619 0.00 0.00 0.00 3.01
4605 7348 3.556213 CCTTGTCACCCGTATCAACAAGA 60.556 47.826 13.51 0.00 46.09 3.02
4606 7349 2.742053 CCTTGTCACCCGTATCAACAAG 59.258 50.000 6.58 6.58 43.98 3.16
4607 7350 2.369203 TCCTTGTCACCCGTATCAACAA 59.631 45.455 0.00 0.00 0.00 2.83
4608 7351 1.972075 TCCTTGTCACCCGTATCAACA 59.028 47.619 0.00 0.00 0.00 3.33
4609 7352 2.618053 CTCCTTGTCACCCGTATCAAC 58.382 52.381 0.00 0.00 0.00 3.18
4610 7353 1.553248 CCTCCTTGTCACCCGTATCAA 59.447 52.381 0.00 0.00 0.00 2.57
4611 7354 1.191535 CCTCCTTGTCACCCGTATCA 58.808 55.000 0.00 0.00 0.00 2.15
4612 7355 1.136500 GTCCTCCTTGTCACCCGTATC 59.864 57.143 0.00 0.00 0.00 2.24
4613 7356 1.192428 GTCCTCCTTGTCACCCGTAT 58.808 55.000 0.00 0.00 0.00 3.06
4614 7357 1.246056 CGTCCTCCTTGTCACCCGTA 61.246 60.000 0.00 0.00 0.00 4.02
4615 7358 2.571216 CGTCCTCCTTGTCACCCGT 61.571 63.158 0.00 0.00 0.00 5.28
4616 7359 2.261671 CGTCCTCCTTGTCACCCG 59.738 66.667 0.00 0.00 0.00 5.28
4617 7360 1.186267 AGACGTCCTCCTTGTCACCC 61.186 60.000 13.01 0.00 35.09 4.61
4618 7361 0.244178 GAGACGTCCTCCTTGTCACC 59.756 60.000 13.01 0.00 35.87 4.02
4619 7362 3.796667 GAGACGTCCTCCTTGTCAC 57.203 57.895 13.01 0.00 35.87 3.67
4629 7372 4.477975 CGCCACGAGGAGACGTCC 62.478 72.222 13.01 3.55 44.76 4.79
4630 7373 2.393768 TACGCCACGAGGAGACGTC 61.394 63.158 9.97 7.70 44.76 4.34
4632 7375 2.099831 GTACGCCACGAGGAGACG 59.900 66.667 9.97 2.66 38.21 4.18
4633 7376 0.745845 TAGGTACGCCACGAGGAGAC 60.746 60.000 9.97 3.47 38.21 3.36
4634 7377 0.745845 GTAGGTACGCCACGAGGAGA 60.746 60.000 9.97 0.00 38.21 3.71
4635 7378 1.722636 GGTAGGTACGCCACGAGGAG 61.723 65.000 1.86 0.98 41.02 3.69
4636 7379 1.750399 GGTAGGTACGCCACGAGGA 60.750 63.158 1.86 0.00 36.89 3.71
4637 7380 1.722636 GAGGTAGGTACGCCACGAGG 61.723 65.000 0.00 0.00 37.19 4.63
4638 7381 0.747283 AGAGGTAGGTACGCCACGAG 60.747 60.000 0.00 0.00 37.19 4.18
4639 7382 0.745845 GAGAGGTAGGTACGCCACGA 60.746 60.000 0.00 0.00 37.19 4.35
4640 7383 0.747283 AGAGAGGTAGGTACGCCACG 60.747 60.000 3.21 0.00 37.19 4.94
4641 7384 0.739561 CAGAGAGGTAGGTACGCCAC 59.260 60.000 3.21 0.00 37.19 5.01
4642 7385 1.035932 GCAGAGAGGTAGGTACGCCA 61.036 60.000 3.21 0.00 37.19 5.69
4643 7386 1.035932 TGCAGAGAGGTAGGTACGCC 61.036 60.000 0.00 0.00 0.00 5.68
4644 7387 0.100861 GTGCAGAGAGGTAGGTACGC 59.899 60.000 0.00 0.00 0.00 4.42
4645 7388 0.377554 CGTGCAGAGAGGTAGGTACG 59.622 60.000 0.00 0.00 33.47 3.67
4646 7389 1.747709 TCGTGCAGAGAGGTAGGTAC 58.252 55.000 0.00 0.00 0.00 3.34
4647 7390 2.298610 CATCGTGCAGAGAGGTAGGTA 58.701 52.381 0.00 0.00 0.00 3.08
4648 7391 1.107114 CATCGTGCAGAGAGGTAGGT 58.893 55.000 0.00 0.00 0.00 3.08
4649 7392 0.249238 GCATCGTGCAGAGAGGTAGG 60.249 60.000 5.80 0.00 44.26 3.18
4650 7393 3.264666 GCATCGTGCAGAGAGGTAG 57.735 57.895 5.80 0.00 44.26 3.18
4661 7404 3.171987 GAGGCACAGTGCATCGTG 58.828 61.111 26.78 12.71 44.36 4.35
4667 7410 2.005451 CAGATTACAGAGGCACAGTGC 58.995 52.381 17.97 17.97 44.08 4.40
4668 7411 2.027745 ACCAGATTACAGAGGCACAGTG 60.028 50.000 0.00 0.00 0.00 3.66
4669 7412 2.260822 ACCAGATTACAGAGGCACAGT 58.739 47.619 0.00 0.00 0.00 3.55
4670 7413 3.055530 AGAACCAGATTACAGAGGCACAG 60.056 47.826 0.00 0.00 0.00 3.66
4671 7414 2.906389 AGAACCAGATTACAGAGGCACA 59.094 45.455 0.00 0.00 0.00 4.57
4672 7415 3.265791 CAGAACCAGATTACAGAGGCAC 58.734 50.000 0.00 0.00 0.00 5.01
4673 7416 2.355108 GCAGAACCAGATTACAGAGGCA 60.355 50.000 0.00 0.00 0.00 4.75
4674 7417 2.093235 AGCAGAACCAGATTACAGAGGC 60.093 50.000 0.00 0.00 0.00 4.70
4675 7418 3.055530 ACAGCAGAACCAGATTACAGAGG 60.056 47.826 0.00 0.00 0.00 3.69
4676 7419 4.199432 ACAGCAGAACCAGATTACAGAG 57.801 45.455 0.00 0.00 0.00 3.35
4677 7420 4.623932 AACAGCAGAACCAGATTACAGA 57.376 40.909 0.00 0.00 0.00 3.41
4678 7421 6.091441 GTCTAAACAGCAGAACCAGATTACAG 59.909 42.308 0.00 0.00 0.00 2.74
4679 7422 5.932303 GTCTAAACAGCAGAACCAGATTACA 59.068 40.000 0.00 0.00 0.00 2.41
4680 7423 5.932303 TGTCTAAACAGCAGAACCAGATTAC 59.068 40.000 0.00 0.00 0.00 1.89
4681 7424 6.109156 TGTCTAAACAGCAGAACCAGATTA 57.891 37.500 0.00 0.00 0.00 1.75
4682 7425 4.973168 TGTCTAAACAGCAGAACCAGATT 58.027 39.130 0.00 0.00 0.00 2.40
4683 7426 4.573900 CTGTCTAAACAGCAGAACCAGAT 58.426 43.478 0.00 0.00 46.01 2.90
4684 7427 3.995199 CTGTCTAAACAGCAGAACCAGA 58.005 45.455 0.00 0.00 46.01 3.86
4695 7438 3.537580 ACTCAAAACGGCTGTCTAAACA 58.462 40.909 0.00 0.00 0.00 2.83
4696 7439 5.662211 TTACTCAAAACGGCTGTCTAAAC 57.338 39.130 0.00 0.00 0.00 2.01
4697 7440 9.826574 ATATATTACTCAAAACGGCTGTCTAAA 57.173 29.630 0.00 0.00 0.00 1.85
4698 7441 9.826574 AATATATTACTCAAAACGGCTGTCTAA 57.173 29.630 0.00 0.00 0.00 2.10
4699 7442 9.472361 GAATATATTACTCAAAACGGCTGTCTA 57.528 33.333 0.00 0.00 0.00 2.59
4700 7443 7.985184 TGAATATATTACTCAAAACGGCTGTCT 59.015 33.333 0.00 0.00 0.00 3.41
4701 7444 8.138365 TGAATATATTACTCAAAACGGCTGTC 57.862 34.615 0.00 0.00 0.00 3.51
4702 7445 7.226720 CCTGAATATATTACTCAAAACGGCTGT 59.773 37.037 0.00 0.00 0.00 4.40
4703 7446 7.226720 ACCTGAATATATTACTCAAAACGGCTG 59.773 37.037 0.00 0.00 0.00 4.85
4704 7447 7.226720 CACCTGAATATATTACTCAAAACGGCT 59.773 37.037 0.00 0.00 0.00 5.52
4705 7448 7.352739 CACCTGAATATATTACTCAAAACGGC 58.647 38.462 0.00 0.00 0.00 5.68
4706 7449 7.041372 CCCACCTGAATATATTACTCAAAACGG 60.041 40.741 0.00 0.00 0.00 4.44
4707 7450 7.041372 CCCCACCTGAATATATTACTCAAAACG 60.041 40.741 0.00 0.00 0.00 3.60
4708 7451 7.996644 TCCCCACCTGAATATATTACTCAAAAC 59.003 37.037 0.00 0.00 0.00 2.43
4709 7452 8.108378 TCCCCACCTGAATATATTACTCAAAA 57.892 34.615 0.00 0.00 0.00 2.44
4710 7453 7.691791 GCTCCCCACCTGAATATATTACTCAAA 60.692 40.741 0.00 0.00 0.00 2.69
4711 7454 6.239887 GCTCCCCACCTGAATATATTACTCAA 60.240 42.308 0.00 0.00 0.00 3.02
4712 7455 5.248477 GCTCCCCACCTGAATATATTACTCA 59.752 44.000 0.00 0.00 0.00 3.41
4713 7456 5.485708 AGCTCCCCACCTGAATATATTACTC 59.514 44.000 0.00 0.00 0.00 2.59
4714 7457 5.415961 AGCTCCCCACCTGAATATATTACT 58.584 41.667 0.00 0.00 0.00 2.24
4715 7458 5.338463 GGAGCTCCCCACCTGAATATATTAC 60.338 48.000 23.19 0.00 0.00 1.89
4716 7459 4.783227 GGAGCTCCCCACCTGAATATATTA 59.217 45.833 23.19 0.00 0.00 0.98
4717 7460 3.589288 GGAGCTCCCCACCTGAATATATT 59.411 47.826 23.19 0.00 0.00 1.28
4718 7461 3.185455 GGAGCTCCCCACCTGAATATAT 58.815 50.000 23.19 0.00 0.00 0.86
4719 7462 2.621070 GGAGCTCCCCACCTGAATATA 58.379 52.381 23.19 0.00 0.00 0.86
4720 7463 1.439543 GGAGCTCCCCACCTGAATAT 58.560 55.000 23.19 0.00 0.00 1.28
4721 7464 2.930935 GGAGCTCCCCACCTGAATA 58.069 57.895 23.19 0.00 0.00 1.75
4722 7465 3.746957 GGAGCTCCCCACCTGAAT 58.253 61.111 23.19 0.00 0.00 2.57
4739 7482 3.399046 TGAGAATCACCGTGGGGG 58.601 61.111 0.00 0.00 42.56 5.40
4765 7508 9.508642 CTTTAGGTCTCTCTAAGTTGGATTTTT 57.491 33.333 0.00 0.00 31.73 1.94
4766 7509 8.103935 CCTTTAGGTCTCTCTAAGTTGGATTTT 58.896 37.037 0.00 0.00 31.73 1.82
4796 7539 8.386264 AGGGCTACTATTTTATCTGCAACATAT 58.614 33.333 0.00 0.00 0.00 1.78
4800 7543 5.823045 ACAGGGCTACTATTTTATCTGCAAC 59.177 40.000 0.00 0.00 0.00 4.17
4835 7578 9.476202 GTGAATTTCATGTAAGCTAAAAGGTTT 57.524 29.630 1.78 0.00 37.16 3.27
4951 7695 2.675844 CCGTGGAAAATCGCATACAAGA 59.324 45.455 0.00 0.00 0.00 3.02
5113 7857 1.154197 GGAACCACCGAGTTGCTAAC 58.846 55.000 0.00 0.00 35.42 2.34
5296 8040 9.530633 AAGTAAGAGAATGGACGATAAATACAC 57.469 33.333 0.00 0.00 0.00 2.90
5316 8060 5.701290 AGGAATCCAACTCGTTTCAAGTAAG 59.299 40.000 0.61 0.00 0.00 2.34
5423 8167 0.687354 TGCCAGACCTGAAGAACCTC 59.313 55.000 0.00 0.00 0.00 3.85
5494 8238 3.656559 ACAAGGCACAAAGAATCAATGC 58.343 40.909 0.00 0.00 35.51 3.56
5559 8303 2.404265 TTTGCAGCGTCAAGACATTG 57.596 45.000 0.72 0.00 37.80 2.82
5658 8402 8.393671 AGTGTACAGCTATAACATACTCCTAC 57.606 38.462 0.00 0.00 0.00 3.18
5659 8403 8.847196 CAAGTGTACAGCTATAACATACTCCTA 58.153 37.037 0.00 0.00 0.00 2.94
5660 8404 7.342284 ACAAGTGTACAGCTATAACATACTCCT 59.658 37.037 0.00 0.00 0.00 3.69
5661 8405 7.435488 CACAAGTGTACAGCTATAACATACTCC 59.565 40.741 0.00 0.00 0.00 3.85
5662 8406 7.435488 CCACAAGTGTACAGCTATAACATACTC 59.565 40.741 0.00 0.00 0.00 2.59
5663 8407 7.265673 CCACAAGTGTACAGCTATAACATACT 58.734 38.462 0.00 0.00 0.00 2.12
5673 8417 1.001406 GAGAGCCACAAGTGTACAGCT 59.999 52.381 4.85 4.85 32.87 4.24
5690 8434 5.242171 ACACACAATTCAGCAATGATTGAGA 59.758 36.000 9.76 3.03 0.00 3.27
5872 8616 0.950836 CACCAAGTTGCCGAACATGA 59.049 50.000 0.00 0.00 33.46 3.07
5929 8673 4.020617 CTCACTGGGGGCTCGCAA 62.021 66.667 4.33 0.00 35.37 4.85
6002 8746 8.269317 CACAAAGGTACCCACTAAAATATAGGA 58.731 37.037 8.74 0.00 0.00 2.94
6015 8759 1.136828 ACAGAGCACAAAGGTACCCA 58.863 50.000 8.74 0.00 0.00 4.51
6364 9108 5.634859 GCTTGTGAGTGGAAAATAAACCATG 59.365 40.000 0.00 0.00 38.48 3.66
6619 9363 2.584492 ACTCCACTGCAAACAAAAGC 57.416 45.000 0.00 0.00 0.00 3.51
6635 9379 9.950680 TTGTGAATTTCTGAAGATAACAAACTC 57.049 29.630 5.45 0.00 0.00 3.01
6672 9416 9.987272 AAGGTAAGTTTAAGTACAACTTCGTAT 57.013 29.630 11.79 0.00 42.33 3.06
6674 9418 8.606602 CAAAGGTAAGTTTAAGTACAACTTCGT 58.393 33.333 11.79 5.26 42.33 3.85
6925 9669 6.818142 GCACCTCTTTTAAACATTTATGCCAT 59.182 34.615 0.00 0.00 0.00 4.40
7090 9834 7.236474 TCGATTAGGCACGTAATACTTATACG 58.764 38.462 4.70 4.70 42.26 3.06
7096 9840 4.201950 ACGTTCGATTAGGCACGTAATACT 60.202 41.667 8.82 0.00 43.79 2.12
7104 9848 3.369756 TCAAATCACGTTCGATTAGGCAC 59.630 43.478 1.92 0.00 34.49 5.01
7105 9849 3.591023 TCAAATCACGTTCGATTAGGCA 58.409 40.909 1.92 0.00 34.49 4.75
7114 9858 7.449934 AACTTCAACAAATCAAATCACGTTC 57.550 32.000 0.00 0.00 0.00 3.95
7138 9882 5.783360 ACGGTAGATAATCCATGGGTCAATA 59.217 40.000 13.02 0.00 0.00 1.90
7321 10068 6.478512 ACTCAACCCAAGCTGAAATAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
7395 10145 3.403038 AGAAGACACCTGTATGCAACAC 58.597 45.455 0.00 0.00 33.45 3.32
7451 10202 3.105937 GTTGAACTCGTGGCAAAGTTTC 58.894 45.455 15.31 10.36 35.90 2.78
7454 10205 0.655733 CGTTGAACTCGTGGCAAAGT 59.344 50.000 0.00 0.00 0.00 2.66
7472 10223 0.673437 ATTTTGTGGTGCACTTCCCG 59.327 50.000 17.98 0.00 35.11 5.14
7478 10229 2.774439 ACTCGAATTTTGTGGTGCAC 57.226 45.000 8.80 8.80 34.56 4.57
7778 10529 0.679505 TTCTTCGGGTGGTCTCTGTG 59.320 55.000 0.00 0.00 0.00 3.66
7791 10542 3.249917 GAGAAGCTCAAGGTCTTCTTCG 58.750 50.000 6.04 0.00 46.32 3.79
7814 10568 9.373450 CATCCTATACTCCCAACTATATATGCT 57.627 37.037 0.00 0.00 0.00 3.79
7965 10722 9.675553 CTTTCACTTTTCTTTCGTTTCATTTTC 57.324 29.630 0.00 0.00 0.00 2.29
8019 10776 2.136298 TTGCCTTGGTCAGACACAAA 57.864 45.000 2.17 0.00 0.00 2.83
8020 10777 2.136298 TTTGCCTTGGTCAGACACAA 57.864 45.000 2.17 3.83 0.00 3.33
8024 10781 3.303791 CGTACTTTTTGCCTTGGTCAGAC 60.304 47.826 0.00 0.00 0.00 3.51
8026 10783 2.616842 ACGTACTTTTTGCCTTGGTCAG 59.383 45.455 0.00 0.00 0.00 3.51
8028 10785 3.703286 AACGTACTTTTTGCCTTGGTC 57.297 42.857 0.00 0.00 0.00 4.02
8031 10788 4.170256 ACACAAACGTACTTTTTGCCTTG 58.830 39.130 13.83 9.20 37.45 3.61
8032 10789 4.157105 AGACACAAACGTACTTTTTGCCTT 59.843 37.500 13.83 2.57 37.45 4.35
8033 10790 3.692593 AGACACAAACGTACTTTTTGCCT 59.307 39.130 13.83 8.12 37.45 4.75
8034 10791 3.789224 CAGACACAAACGTACTTTTTGCC 59.211 43.478 13.83 6.56 37.45 4.52
8035 10792 4.408694 ACAGACACAAACGTACTTTTTGC 58.591 39.130 13.83 2.49 37.45 3.68
8039 10796 6.535865 TCACAATACAGACACAAACGTACTTT 59.464 34.615 0.00 0.00 0.00 2.66
8040 10797 6.019318 GTCACAATACAGACACAAACGTACTT 60.019 38.462 0.00 0.00 34.93 2.24
8042 10799 5.232626 TGTCACAATACAGACACAAACGTAC 59.767 40.000 0.00 0.00 39.65 3.67
8043 10800 5.349809 TGTCACAATACAGACACAAACGTA 58.650 37.500 0.00 0.00 39.65 3.57
8044 10801 4.185394 TGTCACAATACAGACACAAACGT 58.815 39.130 0.00 0.00 39.65 3.99
8045 10802 4.787381 TGTCACAATACAGACACAAACG 57.213 40.909 0.00 0.00 39.65 3.60
8055 10812 5.482006 CTTCCTGATCACTGTCACAATACA 58.518 41.667 0.00 0.00 0.00 2.29
8058 10815 3.307975 CCCTTCCTGATCACTGTCACAAT 60.308 47.826 0.00 0.00 0.00 2.71
8105 10902 6.270815 TCCAACACGAGCATTATTAGTAGAC 58.729 40.000 0.00 0.00 0.00 2.59
8107 10904 7.653713 AGATTCCAACACGAGCATTATTAGTAG 59.346 37.037 0.00 0.00 0.00 2.57
8108 10905 7.438160 CAGATTCCAACACGAGCATTATTAGTA 59.562 37.037 0.00 0.00 0.00 1.82
8109 10906 6.258727 CAGATTCCAACACGAGCATTATTAGT 59.741 38.462 0.00 0.00 0.00 2.24
8128 10925 5.416952 AGTGAATCATGTTGGTTCCAGATTC 59.583 40.000 17.24 17.24 36.68 2.52
8137 10934 3.415212 CAGGTGAGTGAATCATGTTGGT 58.585 45.455 0.00 0.00 40.92 3.67
8181 10978 4.494199 GGATCAAAAGTACCATTCGCTTCG 60.494 45.833 0.00 0.00 0.00 3.79
8207 11004 1.913762 CCCGGACTCTGGAACACCT 60.914 63.158 0.73 0.00 0.00 4.00
8401 11207 1.125633 TCCCTAAGACCCGTATTGGC 58.874 55.000 0.00 0.00 35.87 4.52
8416 11222 2.943036 TCACTAAAAACCGCTTCCCT 57.057 45.000 0.00 0.00 0.00 4.20
8465 11275 3.694566 GCCCTACTCAAAACCCACATAAG 59.305 47.826 0.00 0.00 0.00 1.73
8488 11298 1.470098 CATGGAGCTCGGTTCCAAAAG 59.530 52.381 7.83 4.17 45.38 2.27
8493 11303 1.144936 CTCCATGGAGCTCGGTTCC 59.855 63.158 28.45 0.00 35.31 3.62
8495 11305 0.824759 GTACTCCATGGAGCTCGGTT 59.175 55.000 36.78 21.18 45.54 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.