Multiple sequence alignment - TraesCS3D01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G279800 chr3D 100.000 3419 0 0 1 3419 388326842 388323424 0.000000e+00 6314.0
1 TraesCS3D01G279800 chr3D 87.642 1497 165 11 959 2453 388313626 388312148 0.000000e+00 1722.0
2 TraesCS3D01G279800 chr3D 97.166 247 7 0 1 247 520370497 520370251 5.280000e-113 418.0
3 TraesCS3D01G279800 chr3D 97.095 241 7 0 1 241 557254562 557254322 1.140000e-109 407.0
4 TraesCS3D01G279800 chr3D 75.826 575 111 24 1750 2307 17342357 17341794 2.020000e-67 267.0
5 TraesCS3D01G279800 chr3D 75.335 523 99 24 1699 2200 17698983 17699496 1.230000e-54 224.0
6 TraesCS3D01G279800 chr3A 92.962 2941 153 29 502 3419 509378226 509375317 0.000000e+00 4235.0
7 TraesCS3D01G279800 chr3A 86.198 1507 188 13 954 2454 509251758 509250266 0.000000e+00 1613.0
8 TraesCS3D01G279800 chr3A 91.579 570 46 2 2851 3419 38639255 38638687 0.000000e+00 785.0
9 TraesCS3D01G279800 chr3B 93.951 1587 64 7 830 2388 504962208 504960626 0.000000e+00 2370.0
10 TraesCS3D01G279800 chr3B 85.484 1550 198 19 911 2454 503968605 503970133 0.000000e+00 1591.0
11 TraesCS3D01G279800 chr3B 92.113 355 24 4 442 794 504962564 504962212 6.590000e-137 497.0
12 TraesCS3D01G279800 chr3B 74.957 587 114 29 1751 2316 24901939 24901365 4.410000e-59 239.0
13 TraesCS3D01G279800 chr7B 91.930 570 44 2 2851 3419 214992375 214991807 0.000000e+00 797.0
14 TraesCS3D01G279800 chr5D 91.667 576 46 2 2845 3419 120809854 120810428 0.000000e+00 797.0
15 TraesCS3D01G279800 chr5D 97.154 246 7 0 1 246 533243694 533243939 1.900000e-112 416.0
16 TraesCS3D01G279800 chr5D 97.521 242 6 0 1 242 306180872 306180631 6.830000e-112 414.0
17 TraesCS3D01G279800 chrUn 91.579 570 46 2 2851 3419 16203323 16202755 0.000000e+00 785.0
18 TraesCS3D01G279800 chrUn 96.721 244 5 1 1 244 19794445 19794205 1.480000e-108 403.0
19 TraesCS3D01G279800 chr5B 91.579 570 46 2 2851 3419 655124802 655124234 0.000000e+00 785.0
20 TraesCS3D01G279800 chr4B 91.579 570 46 2 2851 3419 300806161 300805593 0.000000e+00 785.0
21 TraesCS3D01G279800 chr6A 91.419 571 46 3 2851 3419 27705574 27705005 0.000000e+00 780.0
22 TraesCS3D01G279800 chr6A 97.071 239 7 0 1 239 205098132 205098370 1.480000e-108 403.0
23 TraesCS3D01G279800 chr1A 91.146 576 49 2 2845 3419 99858175 99857601 0.000000e+00 780.0
24 TraesCS3D01G279800 chr7D 97.976 247 5 0 1 247 591589836 591589590 2.440000e-116 429.0
25 TraesCS3D01G279800 chr7D 97.083 240 6 1 1 240 518646173 518646411 1.480000e-108 403.0
26 TraesCS3D01G279800 chr7D 96.327 245 9 0 1 245 625913689 625913933 1.480000e-108 403.0
27 TraesCS3D01G279800 chr1B 76.562 512 104 16 1750 2253 589897729 589897226 2.020000e-67 267.0
28 TraesCS3D01G279800 chr2B 75.869 489 82 26 1695 2159 46678359 46678835 2.070000e-52 217.0
29 TraesCS3D01G279800 chr2D 74.180 488 92 26 1695 2159 28914795 28914319 4.540000e-39 172.0
30 TraesCS3D01G279800 chr2A 71.719 541 133 17 1752 2280 105408175 105408707 2.140000e-27 134.0
31 TraesCS3D01G279800 chr4A 90.000 50 5 0 360 409 714530286 714530335 7.920000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G279800 chr3D 388323424 388326842 3418 True 6314.0 6314 100.000 1 3419 1 chr3D.!!$R3 3418
1 TraesCS3D01G279800 chr3D 388312148 388313626 1478 True 1722.0 1722 87.642 959 2453 1 chr3D.!!$R2 1494
2 TraesCS3D01G279800 chr3D 17341794 17342357 563 True 267.0 267 75.826 1750 2307 1 chr3D.!!$R1 557
3 TraesCS3D01G279800 chr3D 17698983 17699496 513 False 224.0 224 75.335 1699 2200 1 chr3D.!!$F1 501
4 TraesCS3D01G279800 chr3A 509375317 509378226 2909 True 4235.0 4235 92.962 502 3419 1 chr3A.!!$R3 2917
5 TraesCS3D01G279800 chr3A 509250266 509251758 1492 True 1613.0 1613 86.198 954 2454 1 chr3A.!!$R2 1500
6 TraesCS3D01G279800 chr3A 38638687 38639255 568 True 785.0 785 91.579 2851 3419 1 chr3A.!!$R1 568
7 TraesCS3D01G279800 chr3B 503968605 503970133 1528 False 1591.0 1591 85.484 911 2454 1 chr3B.!!$F1 1543
8 TraesCS3D01G279800 chr3B 504960626 504962564 1938 True 1433.5 2370 93.032 442 2388 2 chr3B.!!$R2 1946
9 TraesCS3D01G279800 chr3B 24901365 24901939 574 True 239.0 239 74.957 1751 2316 1 chr3B.!!$R1 565
10 TraesCS3D01G279800 chr7B 214991807 214992375 568 True 797.0 797 91.930 2851 3419 1 chr7B.!!$R1 568
11 TraesCS3D01G279800 chr5D 120809854 120810428 574 False 797.0 797 91.667 2845 3419 1 chr5D.!!$F1 574
12 TraesCS3D01G279800 chrUn 16202755 16203323 568 True 785.0 785 91.579 2851 3419 1 chrUn.!!$R1 568
13 TraesCS3D01G279800 chr5B 655124234 655124802 568 True 785.0 785 91.579 2851 3419 1 chr5B.!!$R1 568
14 TraesCS3D01G279800 chr4B 300805593 300806161 568 True 785.0 785 91.579 2851 3419 1 chr4B.!!$R1 568
15 TraesCS3D01G279800 chr6A 27705005 27705574 569 True 780.0 780 91.419 2851 3419 1 chr6A.!!$R1 568
16 TraesCS3D01G279800 chr1A 99857601 99858175 574 True 780.0 780 91.146 2845 3419 1 chr1A.!!$R1 574
17 TraesCS3D01G279800 chr1B 589897226 589897729 503 True 267.0 267 76.562 1750 2253 1 chr1B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.034337 TCAGGCTGACACCGGTAAAC 59.966 55.0 14.43 1.87 33.69 2.01 F
486 487 0.034896 CAGCAGTTAGGGTCGTGGTT 59.965 55.0 0.00 0.00 0.00 3.67 F
517 518 0.101759 TCGGTATCAGTAACGGCAGC 59.898 55.0 0.00 0.00 41.32 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 1462 0.322816 GCAGGTTGAGGAAGATGGCA 60.323 55.000 0.00 0.0 0.00 4.92 R
1471 1511 1.202428 GGAGTCGCCGAGCTCTTTTAT 60.202 52.381 12.85 0.0 32.67 1.40 R
2509 2574 1.169577 ATAGAGGTAGGATGCGCTCG 58.830 55.000 9.73 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.742201 CCTGACCACCCGCGTGAG 62.742 72.222 4.92 0.00 43.14 3.51
83 84 4.742201 CTGACCACCCGCGTGAGG 62.742 72.222 4.92 3.94 43.14 3.86
92 93 4.796231 CGCGTGAGGGGACGAAGG 62.796 72.222 0.00 0.00 42.10 3.46
93 94 3.379445 GCGTGAGGGGACGAAGGA 61.379 66.667 0.00 0.00 42.10 3.36
94 95 2.939261 GCGTGAGGGGACGAAGGAA 61.939 63.158 0.00 0.00 42.10 3.36
95 96 1.215647 CGTGAGGGGACGAAGGAAG 59.784 63.158 0.00 0.00 42.10 3.46
96 97 1.079057 GTGAGGGGACGAAGGAAGC 60.079 63.158 0.00 0.00 0.00 3.86
97 98 2.291043 TGAGGGGACGAAGGAAGCC 61.291 63.158 0.00 0.00 0.00 4.35
98 99 3.009714 AGGGGACGAAGGAAGCCC 61.010 66.667 0.00 0.00 39.93 5.19
100 101 4.468689 GGGACGAAGGAAGCCCCG 62.469 72.222 0.00 0.00 40.87 5.73
124 125 4.711949 CCTGCGCAGACCAGGCTT 62.712 66.667 38.06 0.00 42.98 4.35
125 126 3.123620 CTGCGCAGACCAGGCTTC 61.124 66.667 33.66 0.00 0.00 3.86
162 163 2.363795 CAGTGGCGAGGGGGAGTA 60.364 66.667 0.00 0.00 0.00 2.59
163 164 2.042843 AGTGGCGAGGGGGAGTAG 60.043 66.667 0.00 0.00 0.00 2.57
164 165 3.155167 GTGGCGAGGGGGAGTAGG 61.155 72.222 0.00 0.00 0.00 3.18
165 166 4.475444 TGGCGAGGGGGAGTAGGG 62.475 72.222 0.00 0.00 0.00 3.53
166 167 4.153330 GGCGAGGGGGAGTAGGGA 62.153 72.222 0.00 0.00 0.00 4.20
167 168 2.522193 GCGAGGGGGAGTAGGGAG 60.522 72.222 0.00 0.00 0.00 4.30
168 169 2.198980 CGAGGGGGAGTAGGGAGG 59.801 72.222 0.00 0.00 0.00 4.30
169 170 2.615773 GAGGGGGAGTAGGGAGGG 59.384 72.222 0.00 0.00 0.00 4.30
170 171 2.019272 GAGGGGGAGTAGGGAGGGA 61.019 68.421 0.00 0.00 0.00 4.20
171 172 2.021652 AGGGGGAGTAGGGAGGGAG 61.022 68.421 0.00 0.00 0.00 4.30
172 173 2.019272 GGGGGAGTAGGGAGGGAGA 61.019 68.421 0.00 0.00 0.00 3.71
173 174 1.544703 GGGGAGTAGGGAGGGAGAG 59.455 68.421 0.00 0.00 0.00 3.20
174 175 1.544703 GGGAGTAGGGAGGGAGAGG 59.455 68.421 0.00 0.00 0.00 3.69
175 176 1.544703 GGAGTAGGGAGGGAGAGGG 59.455 68.421 0.00 0.00 0.00 4.30
176 177 1.544703 GAGTAGGGAGGGAGAGGGG 59.455 68.421 0.00 0.00 0.00 4.79
177 178 2.021652 AGTAGGGAGGGAGAGGGGG 61.022 68.421 0.00 0.00 0.00 5.40
178 179 3.449126 TAGGGAGGGAGAGGGGGC 61.449 72.222 0.00 0.00 0.00 5.80
193 194 3.984749 GGCCGAGCGGAGGAGATC 61.985 72.222 13.94 0.00 37.50 2.75
196 197 3.665226 CGAGCGGAGGAGATCGGG 61.665 72.222 0.00 0.00 45.03 5.14
197 198 3.299190 GAGCGGAGGAGATCGGGG 61.299 72.222 0.00 0.00 0.00 5.73
246 247 3.149038 GCGGGAGGGATAGGGTTC 58.851 66.667 0.00 0.00 0.00 3.62
247 248 1.764854 GCGGGAGGGATAGGGTTCA 60.765 63.158 0.00 0.00 0.00 3.18
248 249 2.041206 GCGGGAGGGATAGGGTTCAC 62.041 65.000 0.00 0.00 0.00 3.18
249 250 1.745320 CGGGAGGGATAGGGTTCACG 61.745 65.000 0.00 0.00 0.00 4.35
250 251 0.690077 GGGAGGGATAGGGTTCACGT 60.690 60.000 0.00 0.00 0.00 4.49
251 252 0.464452 GGAGGGATAGGGTTCACGTG 59.536 60.000 9.94 9.94 0.00 4.49
252 253 0.179081 GAGGGATAGGGTTCACGTGC 60.179 60.000 11.67 0.00 0.00 5.34
253 254 0.617820 AGGGATAGGGTTCACGTGCT 60.618 55.000 11.67 4.54 0.00 4.40
254 255 0.252197 GGGATAGGGTTCACGTGCTT 59.748 55.000 11.67 0.00 0.00 3.91
255 256 1.339727 GGGATAGGGTTCACGTGCTTT 60.340 52.381 11.67 0.00 0.00 3.51
256 257 2.433436 GGATAGGGTTCACGTGCTTTT 58.567 47.619 11.67 0.00 0.00 2.27
257 258 2.418976 GGATAGGGTTCACGTGCTTTTC 59.581 50.000 11.67 3.31 0.00 2.29
258 259 2.623878 TAGGGTTCACGTGCTTTTCA 57.376 45.000 11.67 0.00 0.00 2.69
259 260 1.021968 AGGGTTCACGTGCTTTTCAC 58.978 50.000 11.67 0.12 42.23 3.18
270 271 4.059008 GTGCTTTTCACGAAGACATCTC 57.941 45.455 0.00 0.00 35.76 2.75
271 272 3.494626 GTGCTTTTCACGAAGACATCTCA 59.505 43.478 0.00 0.00 35.76 3.27
272 273 3.742882 TGCTTTTCACGAAGACATCTCAG 59.257 43.478 0.00 0.00 0.00 3.35
273 274 3.990469 GCTTTTCACGAAGACATCTCAGA 59.010 43.478 0.00 0.00 0.00 3.27
274 275 4.629200 GCTTTTCACGAAGACATCTCAGAT 59.371 41.667 0.00 0.00 0.00 2.90
275 276 5.807520 GCTTTTCACGAAGACATCTCAGATA 59.192 40.000 0.00 0.00 0.00 1.98
276 277 6.478344 GCTTTTCACGAAGACATCTCAGATAT 59.522 38.462 0.00 0.00 0.00 1.63
277 278 7.306515 GCTTTTCACGAAGACATCTCAGATATC 60.307 40.741 0.00 0.00 0.00 1.63
278 279 6.699575 TTCACGAAGACATCTCAGATATCA 57.300 37.500 5.32 0.00 0.00 2.15
279 280 6.890979 TCACGAAGACATCTCAGATATCAT 57.109 37.500 5.32 0.00 0.00 2.45
280 281 6.907741 TCACGAAGACATCTCAGATATCATC 58.092 40.000 5.32 0.00 0.00 2.92
281 282 6.488006 TCACGAAGACATCTCAGATATCATCA 59.512 38.462 5.32 0.00 0.00 3.07
282 283 7.013655 TCACGAAGACATCTCAGATATCATCAA 59.986 37.037 5.32 0.00 0.00 2.57
283 284 7.114670 CACGAAGACATCTCAGATATCATCAAC 59.885 40.741 5.32 0.00 0.00 3.18
284 285 7.144000 CGAAGACATCTCAGATATCATCAACA 58.856 38.462 5.32 0.00 0.00 3.33
285 286 7.650903 CGAAGACATCTCAGATATCATCAACAA 59.349 37.037 5.32 0.00 0.00 2.83
286 287 8.890124 AAGACATCTCAGATATCATCAACAAG 57.110 34.615 5.32 0.00 0.00 3.16
287 288 8.247666 AGACATCTCAGATATCATCAACAAGA 57.752 34.615 5.32 0.00 0.00 3.02
288 289 8.872134 AGACATCTCAGATATCATCAACAAGAT 58.128 33.333 5.32 0.16 37.48 2.40
289 290 9.142515 GACATCTCAGATATCATCAACAAGATC 57.857 37.037 5.32 0.00 33.72 2.75
290 291 8.648693 ACATCTCAGATATCATCAACAAGATCA 58.351 33.333 5.32 0.00 33.72 2.92
291 292 9.145865 CATCTCAGATATCATCAACAAGATCAG 57.854 37.037 5.32 0.00 33.72 2.90
292 293 7.668492 TCTCAGATATCATCAACAAGATCAGG 58.332 38.462 5.32 0.00 33.72 3.86
293 294 6.228995 TCAGATATCATCAACAAGATCAGGC 58.771 40.000 5.32 0.00 33.72 4.85
294 295 6.042897 TCAGATATCATCAACAAGATCAGGCT 59.957 38.462 5.32 0.00 33.72 4.58
295 296 6.147985 CAGATATCATCAACAAGATCAGGCTG 59.852 42.308 8.58 8.58 33.72 4.85
296 297 3.986996 TCATCAACAAGATCAGGCTGA 57.013 42.857 21.19 21.19 33.72 4.26
297 298 3.603532 TCATCAACAAGATCAGGCTGAC 58.396 45.455 21.37 13.66 33.72 3.51
298 299 3.008266 TCATCAACAAGATCAGGCTGACA 59.992 43.478 21.37 0.00 33.72 3.58
299 300 2.771089 TCAACAAGATCAGGCTGACAC 58.229 47.619 21.37 16.58 0.00 3.67
300 301 1.808945 CAACAAGATCAGGCTGACACC 59.191 52.381 21.37 12.02 0.00 4.16
301 302 0.036952 ACAAGATCAGGCTGACACCG 60.037 55.000 21.37 11.53 33.69 4.94
302 303 0.742281 CAAGATCAGGCTGACACCGG 60.742 60.000 21.37 0.00 33.69 5.28
303 304 1.194781 AAGATCAGGCTGACACCGGT 61.195 55.000 21.37 0.00 33.69 5.28
304 305 0.324368 AGATCAGGCTGACACCGGTA 60.324 55.000 21.37 0.00 33.69 4.02
305 306 0.535335 GATCAGGCTGACACCGGTAA 59.465 55.000 21.37 0.00 33.69 2.85
306 307 0.981183 ATCAGGCTGACACCGGTAAA 59.019 50.000 21.37 0.00 33.69 2.01
307 308 0.034337 TCAGGCTGACACCGGTAAAC 59.966 55.000 14.43 1.87 33.69 2.01
308 309 1.005394 AGGCTGACACCGGTAAACG 60.005 57.895 6.87 0.00 43.80 3.60
309 310 2.674084 GGCTGACACCGGTAAACGC 61.674 63.158 6.87 8.25 42.52 4.84
310 311 2.674084 GCTGACACCGGTAAACGCC 61.674 63.158 6.87 0.00 42.52 5.68
311 312 1.301087 CTGACACCGGTAAACGCCA 60.301 57.895 6.87 0.00 42.52 5.69
312 313 0.881159 CTGACACCGGTAAACGCCAA 60.881 55.000 6.87 0.00 42.52 4.52
313 314 1.159098 TGACACCGGTAAACGCCAAC 61.159 55.000 6.87 0.00 42.52 3.77
314 315 1.153208 ACACCGGTAAACGCCAACA 60.153 52.632 6.87 0.00 42.52 3.33
315 316 1.161563 ACACCGGTAAACGCCAACAG 61.162 55.000 6.87 0.00 42.52 3.16
316 317 2.255881 ACCGGTAAACGCCAACAGC 61.256 57.895 4.49 0.00 42.52 4.40
335 336 4.903010 ACGCACCGCCGTCTTGTT 62.903 61.111 0.00 0.00 36.61 2.83
336 337 4.072088 CGCACCGCCGTCTTGTTC 62.072 66.667 0.00 0.00 0.00 3.18
337 338 2.665185 GCACCGCCGTCTTGTTCT 60.665 61.111 0.00 0.00 0.00 3.01
338 339 1.373748 GCACCGCCGTCTTGTTCTA 60.374 57.895 0.00 0.00 0.00 2.10
339 340 1.352156 GCACCGCCGTCTTGTTCTAG 61.352 60.000 0.00 0.00 0.00 2.43
340 341 1.080025 ACCGCCGTCTTGTTCTAGC 60.080 57.895 0.00 0.00 0.00 3.42
341 342 2.158959 CCGCCGTCTTGTTCTAGCG 61.159 63.158 0.00 0.00 42.99 4.26
342 343 1.154093 CGCCGTCTTGTTCTAGCGA 60.154 57.895 0.00 0.00 46.03 4.93
343 344 1.403972 CGCCGTCTTGTTCTAGCGAC 61.404 60.000 0.00 0.00 46.03 5.19
344 345 1.403972 GCCGTCTTGTTCTAGCGACG 61.404 60.000 0.00 0.00 46.21 5.12
347 348 2.327081 GTCTTGTTCTAGCGACGACA 57.673 50.000 0.00 0.00 0.00 4.35
348 349 2.864968 GTCTTGTTCTAGCGACGACAT 58.135 47.619 0.00 0.00 0.00 3.06
349 350 3.243336 GTCTTGTTCTAGCGACGACATT 58.757 45.455 0.00 0.00 0.00 2.71
350 351 3.059570 GTCTTGTTCTAGCGACGACATTG 59.940 47.826 0.00 0.00 0.00 2.82
351 352 3.057806 TCTTGTTCTAGCGACGACATTGA 60.058 43.478 0.00 0.00 0.00 2.57
352 353 2.592194 TGTTCTAGCGACGACATTGAC 58.408 47.619 0.00 0.00 0.00 3.18
353 354 1.918609 GTTCTAGCGACGACATTGACC 59.081 52.381 0.00 0.00 0.00 4.02
354 355 1.170442 TCTAGCGACGACATTGACCA 58.830 50.000 0.00 0.00 0.00 4.02
355 356 1.749063 TCTAGCGACGACATTGACCAT 59.251 47.619 0.00 0.00 0.00 3.55
356 357 2.165641 TCTAGCGACGACATTGACCATT 59.834 45.455 0.00 0.00 0.00 3.16
357 358 1.359848 AGCGACGACATTGACCATTC 58.640 50.000 0.00 0.00 0.00 2.67
358 359 1.075542 GCGACGACATTGACCATTCA 58.924 50.000 0.00 0.00 0.00 2.57
359 360 1.061131 GCGACGACATTGACCATTCAG 59.939 52.381 0.00 0.00 31.71 3.02
360 361 2.337583 CGACGACATTGACCATTCAGT 58.662 47.619 0.00 0.00 31.71 3.41
361 362 2.092681 CGACGACATTGACCATTCAGTG 59.907 50.000 0.00 0.00 43.44 3.66
373 374 4.982241 CCATTCAGTGGTACAGGGATAT 57.018 45.455 0.00 0.00 43.44 1.63
374 375 4.899502 CCATTCAGTGGTACAGGGATATC 58.100 47.826 0.00 0.00 43.44 1.63
375 376 4.560128 CATTCAGTGGTACAGGGATATCG 58.440 47.826 0.00 0.00 41.80 2.92
376 377 3.588210 TCAGTGGTACAGGGATATCGA 57.412 47.619 0.00 0.00 41.80 3.59
377 378 4.114015 TCAGTGGTACAGGGATATCGAT 57.886 45.455 2.16 2.16 41.80 3.59
378 379 3.826729 TCAGTGGTACAGGGATATCGATG 59.173 47.826 8.54 0.57 41.80 3.84
379 380 2.563179 AGTGGTACAGGGATATCGATGC 59.437 50.000 8.54 0.00 41.80 3.91
380 381 2.299013 GTGGTACAGGGATATCGATGCA 59.701 50.000 8.54 0.00 41.80 3.96
381 382 2.969262 TGGTACAGGGATATCGATGCAA 59.031 45.455 8.54 0.00 0.00 4.08
382 383 3.582647 TGGTACAGGGATATCGATGCAAT 59.417 43.478 8.54 0.00 0.00 3.56
383 384 4.041567 TGGTACAGGGATATCGATGCAATT 59.958 41.667 8.54 0.00 0.00 2.32
384 385 5.003804 GGTACAGGGATATCGATGCAATTT 58.996 41.667 8.54 0.00 0.00 1.82
385 386 5.473504 GGTACAGGGATATCGATGCAATTTT 59.526 40.000 8.54 0.00 0.00 1.82
386 387 6.016276 GGTACAGGGATATCGATGCAATTTTT 60.016 38.462 8.54 0.00 0.00 1.94
387 388 7.174253 GGTACAGGGATATCGATGCAATTTTTA 59.826 37.037 8.54 0.00 0.00 1.52
388 389 7.765695 ACAGGGATATCGATGCAATTTTTAT 57.234 32.000 8.54 0.00 0.00 1.40
389 390 8.181904 ACAGGGATATCGATGCAATTTTTATT 57.818 30.769 8.54 0.00 0.00 1.40
390 391 9.295825 ACAGGGATATCGATGCAATTTTTATTA 57.704 29.630 8.54 0.00 0.00 0.98
415 416 8.911247 ATATTTGAGGTTCTTTGTATTTTCGC 57.089 30.769 0.00 0.00 0.00 4.70
416 417 6.385649 TTTGAGGTTCTTTGTATTTTCGCT 57.614 33.333 0.00 0.00 0.00 4.93
417 418 5.356882 TGAGGTTCTTTGTATTTTCGCTG 57.643 39.130 0.00 0.00 0.00 5.18
418 419 5.060506 TGAGGTTCTTTGTATTTTCGCTGA 58.939 37.500 0.00 0.00 0.00 4.26
419 420 5.529430 TGAGGTTCTTTGTATTTTCGCTGAA 59.471 36.000 0.00 0.00 0.00 3.02
420 421 5.758924 AGGTTCTTTGTATTTTCGCTGAAC 58.241 37.500 0.00 0.00 33.87 3.18
421 422 5.298276 AGGTTCTTTGTATTTTCGCTGAACA 59.702 36.000 0.00 0.00 35.61 3.18
422 423 5.398416 GGTTCTTTGTATTTTCGCTGAACAC 59.602 40.000 0.00 0.00 35.61 3.32
423 424 6.199393 GTTCTTTGTATTTTCGCTGAACACT 58.801 36.000 0.00 0.00 34.51 3.55
424 425 5.747565 TCTTTGTATTTTCGCTGAACACTG 58.252 37.500 0.00 0.00 0.00 3.66
425 426 4.481930 TTGTATTTTCGCTGAACACTGG 57.518 40.909 0.00 0.00 0.00 4.00
426 427 3.734463 TGTATTTTCGCTGAACACTGGA 58.266 40.909 0.00 0.00 0.00 3.86
427 428 4.323417 TGTATTTTCGCTGAACACTGGAT 58.677 39.130 0.00 0.00 0.00 3.41
428 429 3.837213 ATTTTCGCTGAACACTGGATG 57.163 42.857 0.00 0.00 0.00 3.51
429 430 2.254546 TTTCGCTGAACACTGGATGT 57.745 45.000 0.00 0.00 46.42 3.06
438 439 3.864789 AACACTGGATGTGGTTCTTCT 57.135 42.857 0.00 0.00 45.79 2.85
439 440 3.744660 AACACTGGATGTGGTTCTTCTC 58.255 45.455 0.00 0.00 45.79 2.87
440 441 2.704572 CACTGGATGTGGTTCTTCTCC 58.295 52.381 0.00 0.00 42.68 3.71
458 459 5.673337 TCTCCAAAAGAACTCGTTCATTG 57.327 39.130 11.90 14.05 41.84 2.82
474 475 2.203056 TGCGTCACTGCAGCAGTT 60.203 55.556 26.16 8.48 42.59 3.16
486 487 0.034896 CAGCAGTTAGGGTCGTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
490 491 0.250166 AGTTAGGGTCGTGGTTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
498 499 2.264813 GTCGTGGTTGCACATACGTAT 58.735 47.619 1.14 1.14 37.74 3.06
507 508 4.155310 TGCACATACGTATCGGTATCAG 57.845 45.455 4.74 0.00 30.86 2.90
517 518 0.101759 TCGGTATCAGTAACGGCAGC 59.898 55.000 0.00 0.00 41.32 5.25
519 520 0.177141 GGTATCAGTAACGGCAGCCA 59.823 55.000 13.30 0.00 0.00 4.75
520 521 1.202651 GGTATCAGTAACGGCAGCCAT 60.203 52.381 13.30 1.53 0.00 4.40
618 628 1.093159 TCTAGAAGAAGACGGCGTCC 58.907 55.000 34.04 20.90 32.18 4.79
736 746 2.765135 CTGGATGAGATGAGGACAGTGT 59.235 50.000 0.00 0.00 0.00 3.55
737 747 2.498885 TGGATGAGATGAGGACAGTGTG 59.501 50.000 0.00 0.00 0.00 3.82
739 749 2.309136 TGAGATGAGGACAGTGTGGA 57.691 50.000 0.00 0.00 0.00 4.02
740 750 1.895798 TGAGATGAGGACAGTGTGGAC 59.104 52.381 0.00 0.00 0.00 4.02
741 751 1.205893 GAGATGAGGACAGTGTGGACC 59.794 57.143 0.00 0.00 0.00 4.46
743 753 0.979665 ATGAGGACAGTGTGGACCTG 59.020 55.000 0.00 0.00 36.01 4.00
744 754 0.398522 TGAGGACAGTGTGGACCTGT 60.399 55.000 0.00 0.00 45.52 4.00
763 773 2.126228 TCTTACGACGGCGGCTTG 60.126 61.111 18.49 1.62 43.17 4.01
773 783 4.096003 GCGGCTTGAGGCACCCTA 62.096 66.667 5.38 0.00 44.01 3.53
809 819 0.524392 GTCGAGATGTGTCGCTGAGG 60.524 60.000 0.00 0.00 39.90 3.86
827 837 1.080434 GTCAGCTCACGGTCTCACC 60.080 63.158 0.00 0.00 34.05 4.02
838 848 4.408821 TCTCACCGGGCCATGCAC 62.409 66.667 6.32 0.00 0.00 4.57
858 868 2.529744 GCTCAACCAGACCACCCCT 61.530 63.158 0.00 0.00 0.00 4.79
885 895 3.428045 CCAAATTTGACTGGATTCGAGCC 60.428 47.826 19.86 0.00 34.35 4.70
908 918 2.104967 CCACGCTATATTATCCCCGGA 58.895 52.381 0.73 0.00 0.00 5.14
909 919 2.159142 CCACGCTATATTATCCCCGGAC 60.159 54.545 0.73 0.00 0.00 4.79
957 968 1.066257 GCACAGGCACAACACCAAG 59.934 57.895 0.00 0.00 40.72 3.61
993 1009 5.517054 CCATTTCGTACTAGAAGAGTGAAGC 59.483 44.000 0.00 0.00 39.39 3.86
1391 1431 2.359230 GCTCAAGCTGCCGGTCTT 60.359 61.111 1.90 1.25 38.21 3.01
1398 1438 0.612174 AGCTGCCGGTCTTCTACTCA 60.612 55.000 1.90 0.00 0.00 3.41
1471 1511 1.748879 GCCAGCAATACGGCCAAGA 60.749 57.895 2.24 0.00 42.82 3.02
1509 1549 1.526917 CATCATCACCTTCCCGGGC 60.527 63.158 18.49 0.00 36.97 6.13
1683 1723 0.806884 TCAACGACGGACTTTGCGTT 60.807 50.000 0.00 0.00 46.52 4.84
1731 1771 3.782443 ATCGGGCCGTTGGTCTCC 61.782 66.667 27.32 0.00 0.00 3.71
2220 2278 4.985538 TGAGAGGCTACAATGAAAAGGTT 58.014 39.130 0.00 0.00 0.00 3.50
2277 2335 2.577020 TTATGGCGTCCGAGGGAGGA 62.577 60.000 8.44 0.00 39.66 3.71
2278 2336 2.978298 TATGGCGTCCGAGGGAGGAG 62.978 65.000 8.44 0.00 41.68 3.69
2379 2437 2.606108 GCGTTTGCCCAATTCCTAAAG 58.394 47.619 0.00 0.00 33.98 1.85
2435 2493 5.088739 CGATTGATGTGAAGCTTGTAAACC 58.911 41.667 2.10 0.00 0.00 3.27
2443 2501 6.228258 TGTGAAGCTTGTAAACCCTACTTAG 58.772 40.000 2.10 0.00 0.00 2.18
2471 2529 8.600625 GTTGGATTTTCTTTTTAGAAACACACC 58.399 33.333 0.11 3.45 37.50 4.16
2473 2531 7.148052 TGGATTTTCTTTTTAGAAACACACCGA 60.148 33.333 0.11 0.00 37.50 4.69
2474 2532 7.703197 GGATTTTCTTTTTAGAAACACACCGAA 59.297 33.333 0.11 0.00 37.50 4.30
2477 2535 6.988622 TCTTTTTAGAAACACACCGAAGAA 57.011 33.333 0.00 0.00 0.00 2.52
2483 2548 3.621715 AGAAACACACCGAAGAAACTCAC 59.378 43.478 0.00 0.00 0.00 3.51
2501 2566 8.556213 AAACTCACGCAAACTTATTCCTATAA 57.444 30.769 0.00 0.00 0.00 0.98
2509 2574 6.905609 GCAAACTTATTCCTATAAGAACGCAC 59.094 38.462 10.88 0.00 43.93 5.34
2523 2588 2.962253 GCACGAGCGCATCCTACC 60.962 66.667 11.47 0.00 0.00 3.18
2524 2589 2.808315 CACGAGCGCATCCTACCT 59.192 61.111 11.47 0.00 0.00 3.08
2539 2604 7.093992 GCATCCTACCTCTATATGAACACTTC 58.906 42.308 0.00 0.00 0.00 3.01
2540 2605 7.607250 CATCCTACCTCTATATGAACACTTCC 58.393 42.308 0.00 0.00 0.00 3.46
2546 2611 5.986135 CCTCTATATGAACACTTCCGGAAAG 59.014 44.000 19.39 15.88 41.08 2.62
2562 2627 0.615331 AAAGCTGAGCCGGAAGATCA 59.385 50.000 5.05 1.85 0.00 2.92
2570 2635 3.897505 TGAGCCGGAAGATCATGAGATTA 59.102 43.478 5.05 0.00 33.72 1.75
2580 2645 8.772705 GGAAGATCATGAGATTAATGAAGTCAC 58.227 37.037 0.09 0.00 37.58 3.67
2581 2646 9.322773 GAAGATCATGAGATTAATGAAGTCACA 57.677 33.333 0.09 0.00 37.58 3.58
2582 2647 9.848710 AAGATCATGAGATTAATGAAGTCACAT 57.151 29.630 0.09 0.00 37.58 3.21
2604 2669 7.904977 CACATCAATCATTTTGTAGTCTAACGG 59.095 37.037 0.00 0.00 0.00 4.44
2608 2673 9.309516 TCAATCATTTTGTAGTCTAACGGATAC 57.690 33.333 0.00 0.00 0.00 2.24
2609 2674 9.093970 CAATCATTTTGTAGTCTAACGGATACA 57.906 33.333 0.00 0.00 0.00 2.29
2610 2675 8.644318 ATCATTTTGTAGTCTAACGGATACAC 57.356 34.615 0.00 0.00 0.00 2.90
2611 2676 7.604549 TCATTTTGTAGTCTAACGGATACACA 58.395 34.615 0.00 0.00 0.00 3.72
2612 2677 8.255206 TCATTTTGTAGTCTAACGGATACACAT 58.745 33.333 0.00 0.00 0.00 3.21
2613 2678 9.524106 CATTTTGTAGTCTAACGGATACACATA 57.476 33.333 0.00 0.00 0.00 2.29
2615 2680 9.740239 TTTTGTAGTCTAACGGATACACATATC 57.260 33.333 0.00 0.00 37.12 1.63
2624 2689 5.466819 ACGGATACACATATCATAACACCG 58.533 41.667 0.00 0.00 39.29 4.94
2636 2701 5.712217 TCATAACACCGAAAAGAATAGCG 57.288 39.130 0.00 0.00 0.00 4.26
2644 2709 3.091417 CGAAAAGAATAGCGGCGAAAAG 58.909 45.455 12.98 0.00 0.00 2.27
2647 2712 1.653151 AGAATAGCGGCGAAAAGACC 58.347 50.000 12.98 0.00 0.00 3.85
2696 2761 5.565439 GCACCCATATGCCAAATCTAACATC 60.565 44.000 0.00 0.00 39.86 3.06
2715 2780 2.093106 TCGAGTCTGGGAGCTTAGTTC 58.907 52.381 0.00 0.00 0.00 3.01
2722 2787 4.021016 GTCTGGGAGCTTAGTTCTTTCTCA 60.021 45.833 0.00 0.00 0.00 3.27
2756 2821 6.291648 ACATTACTCTTCAGCAGATTCTCA 57.708 37.500 0.00 0.00 0.00 3.27
2826 2891 5.049167 TGCATTCCAACAAGTTCAACATTC 58.951 37.500 0.00 0.00 0.00 2.67
2829 2894 6.258507 GCATTCCAACAAGTTCAACATTCTTT 59.741 34.615 0.00 0.00 0.00 2.52
2836 2901 6.275335 ACAAGTTCAACATTCTTTGGACATG 58.725 36.000 0.00 0.00 38.89 3.21
2837 2902 6.096705 ACAAGTTCAACATTCTTTGGACATGA 59.903 34.615 0.00 0.00 36.27 3.07
2838 2903 6.713762 AGTTCAACATTCTTTGGACATGAA 57.286 33.333 0.00 0.00 37.43 2.57
2839 2904 7.111247 AGTTCAACATTCTTTGGACATGAAA 57.889 32.000 0.00 0.00 37.43 2.69
2840 2905 7.555087 AGTTCAACATTCTTTGGACATGAAAA 58.445 30.769 0.00 0.00 37.43 2.29
2841 2906 7.707893 AGTTCAACATTCTTTGGACATGAAAAG 59.292 33.333 0.00 6.82 37.43 2.27
2842 2907 7.345422 TCAACATTCTTTGGACATGAAAAGA 57.655 32.000 14.63 14.63 39.91 2.52
2877 2942 3.390639 AGGTGCTTCTCCTAATGATGAGG 59.609 47.826 0.00 0.00 33.04 3.86
2922 2987 8.682936 AGTTGATAAAGGTTATAGCCAGATTG 57.317 34.615 8.48 0.00 0.00 2.67
2999 3064 5.294356 TCGCACTTTACTCAGTATTGTTGT 58.706 37.500 0.00 0.00 0.00 3.32
3013 3078 8.738106 TCAGTATTGTTGTCATGCATGATTTTA 58.262 29.630 30.89 15.89 39.30 1.52
3073 3138 8.757307 ACATGGAGAATTAGAAGGGGATATTA 57.243 34.615 0.00 0.00 0.00 0.98
3219 3284 3.461831 TCCTCTCCCAAGGTTTCAAAAGA 59.538 43.478 0.00 0.00 37.69 2.52
3221 3286 4.835056 CCTCTCCCAAGGTTTCAAAAGATT 59.165 41.667 0.00 0.00 0.00 2.40
3269 3336 6.913170 TGAAAACTTCAATGGTTCAGCTATC 58.087 36.000 0.00 0.00 36.59 2.08
3314 3381 9.178427 GATGATATGTTAATTGCTTCAAAGAGC 57.822 33.333 0.00 0.00 43.00 4.09
3388 3455 5.645067 TGAAGGATATGAGTGCAACAAAGAG 59.355 40.000 0.00 0.00 41.43 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.742201 CTCACGCGGGTGGTCAGG 62.742 72.222 29.45 12.72 44.50 3.86
66 67 4.742201 CCTCACGCGGGTGGTCAG 62.742 72.222 29.45 19.96 44.50 3.51
74 75 4.796231 CTTCGTCCCCTCACGCGG 62.796 72.222 12.47 0.00 39.74 6.46
75 76 4.796231 CCTTCGTCCCCTCACGCG 62.796 72.222 3.53 3.53 39.74 6.01
76 77 2.837371 CTTCCTTCGTCCCCTCACGC 62.837 65.000 0.00 0.00 39.74 5.34
77 78 1.215647 CTTCCTTCGTCCCCTCACG 59.784 63.158 0.00 0.00 41.36 4.35
78 79 1.079057 GCTTCCTTCGTCCCCTCAC 60.079 63.158 0.00 0.00 0.00 3.51
79 80 2.291043 GGCTTCCTTCGTCCCCTCA 61.291 63.158 0.00 0.00 0.00 3.86
80 81 2.585153 GGCTTCCTTCGTCCCCTC 59.415 66.667 0.00 0.00 0.00 4.30
81 82 3.009714 GGGCTTCCTTCGTCCCCT 61.010 66.667 0.00 0.00 32.60 4.79
83 84 4.468689 CGGGGCTTCCTTCGTCCC 62.469 72.222 0.00 0.00 38.03 4.46
107 108 4.711949 AAGCCTGGTCTGCGCAGG 62.712 66.667 35.36 22.04 36.65 4.85
108 109 3.123620 GAAGCCTGGTCTGCGCAG 61.124 66.667 31.53 31.53 0.00 5.18
137 138 4.463879 CTCGCCACTGCTGGAGGG 62.464 72.222 0.14 0.00 40.55 4.30
138 139 4.463879 CCTCGCCACTGCTGGAGG 62.464 72.222 0.14 0.00 40.55 4.30
139 140 4.463879 CCCTCGCCACTGCTGGAG 62.464 72.222 0.00 0.00 40.55 3.86
145 146 2.363795 TACTCCCCCTCGCCACTG 60.364 66.667 0.00 0.00 0.00 3.66
146 147 2.042843 CTACTCCCCCTCGCCACT 60.043 66.667 0.00 0.00 0.00 4.00
147 148 3.155167 CCTACTCCCCCTCGCCAC 61.155 72.222 0.00 0.00 0.00 5.01
148 149 4.475444 CCCTACTCCCCCTCGCCA 62.475 72.222 0.00 0.00 0.00 5.69
149 150 4.153330 TCCCTACTCCCCCTCGCC 62.153 72.222 0.00 0.00 0.00 5.54
150 151 2.522193 CTCCCTACTCCCCCTCGC 60.522 72.222 0.00 0.00 0.00 5.03
151 152 2.198980 CCTCCCTACTCCCCCTCG 59.801 72.222 0.00 0.00 0.00 4.63
152 153 2.019272 TCCCTCCCTACTCCCCCTC 61.019 68.421 0.00 0.00 0.00 4.30
153 154 2.021652 CTCCCTCCCTACTCCCCCT 61.022 68.421 0.00 0.00 0.00 4.79
154 155 2.019272 TCTCCCTCCCTACTCCCCC 61.019 68.421 0.00 0.00 0.00 5.40
155 156 1.544703 CTCTCCCTCCCTACTCCCC 59.455 68.421 0.00 0.00 0.00 4.81
156 157 1.544703 CCTCTCCCTCCCTACTCCC 59.455 68.421 0.00 0.00 0.00 4.30
157 158 1.544703 CCCTCTCCCTCCCTACTCC 59.455 68.421 0.00 0.00 0.00 3.85
158 159 1.544703 CCCCTCTCCCTCCCTACTC 59.455 68.421 0.00 0.00 0.00 2.59
159 160 2.021652 CCCCCTCTCCCTCCCTACT 61.022 68.421 0.00 0.00 0.00 2.57
160 161 2.615773 CCCCCTCTCCCTCCCTAC 59.384 72.222 0.00 0.00 0.00 3.18
161 162 3.449126 GCCCCCTCTCCCTCCCTA 61.449 72.222 0.00 0.00 0.00 3.53
176 177 3.984749 GATCTCCTCCGCTCGGCC 61.985 72.222 2.96 0.00 34.68 6.13
177 178 4.335584 CGATCTCCTCCGCTCGGC 62.336 72.222 2.96 0.00 34.68 5.54
178 179 3.665226 CCGATCTCCTCCGCTCGG 61.665 72.222 1.14 1.14 43.98 4.63
179 180 3.665226 CCCGATCTCCTCCGCTCG 61.665 72.222 0.00 0.00 0.00 5.03
180 181 3.299190 CCCCGATCTCCTCCGCTC 61.299 72.222 0.00 0.00 0.00 5.03
228 229 2.842936 AACCCTATCCCTCCCGCG 60.843 66.667 0.00 0.00 0.00 6.46
229 230 1.764854 TGAACCCTATCCCTCCCGC 60.765 63.158 0.00 0.00 0.00 6.13
230 231 1.745320 CGTGAACCCTATCCCTCCCG 61.745 65.000 0.00 0.00 0.00 5.14
231 232 0.690077 ACGTGAACCCTATCCCTCCC 60.690 60.000 0.00 0.00 0.00 4.30
232 233 0.464452 CACGTGAACCCTATCCCTCC 59.536 60.000 10.90 0.00 0.00 4.30
233 234 0.179081 GCACGTGAACCCTATCCCTC 60.179 60.000 22.23 0.00 0.00 4.30
234 235 0.617820 AGCACGTGAACCCTATCCCT 60.618 55.000 22.23 0.00 0.00 4.20
235 236 0.252197 AAGCACGTGAACCCTATCCC 59.748 55.000 22.23 0.00 0.00 3.85
236 237 2.109425 AAAGCACGTGAACCCTATCC 57.891 50.000 22.23 0.00 0.00 2.59
237 238 3.071479 TGAAAAGCACGTGAACCCTATC 58.929 45.455 22.23 9.26 0.00 2.08
238 239 2.812011 GTGAAAAGCACGTGAACCCTAT 59.188 45.455 22.23 0.00 37.83 2.57
239 240 2.215196 GTGAAAAGCACGTGAACCCTA 58.785 47.619 22.23 0.00 37.83 3.53
240 241 1.021968 GTGAAAAGCACGTGAACCCT 58.978 50.000 22.23 3.24 37.83 4.34
241 242 3.544615 GTGAAAAGCACGTGAACCC 57.455 52.632 22.23 0.35 37.83 4.11
249 250 3.494626 TGAGATGTCTTCGTGAAAAGCAC 59.505 43.478 0.00 0.00 44.21 4.40
250 251 3.727726 TGAGATGTCTTCGTGAAAAGCA 58.272 40.909 0.00 0.00 0.00 3.91
251 252 3.990469 TCTGAGATGTCTTCGTGAAAAGC 59.010 43.478 0.00 0.00 0.00 3.51
252 253 7.704047 TGATATCTGAGATGTCTTCGTGAAAAG 59.296 37.037 18.07 0.00 0.00 2.27
253 254 7.547227 TGATATCTGAGATGTCTTCGTGAAAA 58.453 34.615 18.07 0.00 0.00 2.29
254 255 7.100458 TGATATCTGAGATGTCTTCGTGAAA 57.900 36.000 18.07 0.00 0.00 2.69
255 256 6.699575 TGATATCTGAGATGTCTTCGTGAA 57.300 37.500 18.07 0.00 0.00 3.18
256 257 6.488006 TGATGATATCTGAGATGTCTTCGTGA 59.512 38.462 21.42 8.90 0.00 4.35
257 258 6.675987 TGATGATATCTGAGATGTCTTCGTG 58.324 40.000 21.42 0.00 0.00 4.35
258 259 6.890979 TGATGATATCTGAGATGTCTTCGT 57.109 37.500 21.42 9.45 0.00 3.85
259 260 7.144000 TGTTGATGATATCTGAGATGTCTTCG 58.856 38.462 21.42 0.00 0.00 3.79
260 261 8.883954 TTGTTGATGATATCTGAGATGTCTTC 57.116 34.615 20.67 20.67 0.00 2.87
261 262 8.702819 TCTTGTTGATGATATCTGAGATGTCTT 58.297 33.333 18.07 12.77 0.00 3.01
262 263 8.247666 TCTTGTTGATGATATCTGAGATGTCT 57.752 34.615 18.07 5.96 0.00 3.41
263 264 9.142515 GATCTTGTTGATGATATCTGAGATGTC 57.857 37.037 11.71 11.71 35.14 3.06
264 265 8.648693 TGATCTTGTTGATGATATCTGAGATGT 58.351 33.333 4.96 0.00 35.14 3.06
265 266 9.145865 CTGATCTTGTTGATGATATCTGAGATG 57.854 37.037 4.96 0.00 35.14 2.90
266 267 8.315482 CCTGATCTTGTTGATGATATCTGAGAT 58.685 37.037 3.98 0.00 35.14 2.75
267 268 7.668492 CCTGATCTTGTTGATGATATCTGAGA 58.332 38.462 3.98 0.00 35.14 3.27
268 269 6.369340 GCCTGATCTTGTTGATGATATCTGAG 59.631 42.308 3.98 0.00 35.14 3.35
269 270 6.042897 AGCCTGATCTTGTTGATGATATCTGA 59.957 38.462 3.98 0.00 35.14 3.27
270 271 6.147985 CAGCCTGATCTTGTTGATGATATCTG 59.852 42.308 3.98 0.00 35.14 2.90
271 272 6.042897 TCAGCCTGATCTTGTTGATGATATCT 59.957 38.462 3.98 0.00 35.14 1.98
272 273 6.147492 GTCAGCCTGATCTTGTTGATGATATC 59.853 42.308 0.00 0.00 35.14 1.63
273 274 5.996513 GTCAGCCTGATCTTGTTGATGATAT 59.003 40.000 0.00 0.00 35.14 1.63
274 275 5.104817 TGTCAGCCTGATCTTGTTGATGATA 60.105 40.000 0.00 0.00 35.14 2.15
275 276 4.197750 GTCAGCCTGATCTTGTTGATGAT 58.802 43.478 0.00 0.00 35.14 2.45
276 277 3.008266 TGTCAGCCTGATCTTGTTGATGA 59.992 43.478 0.00 0.00 35.14 2.92
277 278 3.126514 GTGTCAGCCTGATCTTGTTGATG 59.873 47.826 0.00 0.00 35.14 3.07
278 279 3.341823 GTGTCAGCCTGATCTTGTTGAT 58.658 45.455 0.00 0.00 38.27 2.57
279 280 2.550855 GGTGTCAGCCTGATCTTGTTGA 60.551 50.000 0.00 0.00 0.00 3.18
280 281 1.808945 GGTGTCAGCCTGATCTTGTTG 59.191 52.381 0.00 0.00 0.00 3.33
281 282 1.609061 CGGTGTCAGCCTGATCTTGTT 60.609 52.381 0.00 0.00 0.00 2.83
282 283 0.036952 CGGTGTCAGCCTGATCTTGT 60.037 55.000 0.00 0.00 0.00 3.16
283 284 0.742281 CCGGTGTCAGCCTGATCTTG 60.742 60.000 0.00 0.00 0.00 3.02
284 285 1.194781 ACCGGTGTCAGCCTGATCTT 61.195 55.000 6.12 0.00 0.00 2.40
285 286 0.324368 TACCGGTGTCAGCCTGATCT 60.324 55.000 19.93 0.00 0.00 2.75
286 287 0.535335 TTACCGGTGTCAGCCTGATC 59.465 55.000 19.93 0.00 0.00 2.92
287 288 0.981183 TTTACCGGTGTCAGCCTGAT 59.019 50.000 19.93 0.00 0.00 2.90
288 289 0.034337 GTTTACCGGTGTCAGCCTGA 59.966 55.000 19.93 0.00 0.00 3.86
289 290 1.289109 CGTTTACCGGTGTCAGCCTG 61.289 60.000 19.93 0.00 0.00 4.85
290 291 1.005394 CGTTTACCGGTGTCAGCCT 60.005 57.895 19.93 0.00 0.00 4.58
291 292 2.674084 GCGTTTACCGGTGTCAGCC 61.674 63.158 19.93 0.00 36.94 4.85
292 293 2.674084 GGCGTTTACCGGTGTCAGC 61.674 63.158 19.93 17.17 36.94 4.26
293 294 0.881159 TTGGCGTTTACCGGTGTCAG 60.881 55.000 19.93 7.50 36.94 3.51
294 295 1.145598 TTGGCGTTTACCGGTGTCA 59.854 52.632 19.93 4.80 36.94 3.58
295 296 1.159098 TGTTGGCGTTTACCGGTGTC 61.159 55.000 19.93 1.41 36.94 3.67
296 297 1.153208 TGTTGGCGTTTACCGGTGT 60.153 52.632 19.93 0.00 36.94 4.16
297 298 1.572447 CTGTTGGCGTTTACCGGTG 59.428 57.895 19.93 0.10 36.94 4.94
298 299 2.255881 GCTGTTGGCGTTTACCGGT 61.256 57.895 13.98 13.98 36.94 5.28
299 300 2.559330 GCTGTTGGCGTTTACCGG 59.441 61.111 0.00 0.00 36.94 5.28
318 319 4.903010 AACAAGACGGCGGTGCGT 62.903 61.111 13.24 0.00 0.00 5.24
319 320 4.072088 GAACAAGACGGCGGTGCG 62.072 66.667 13.24 0.00 0.00 5.34
320 321 1.352156 CTAGAACAAGACGGCGGTGC 61.352 60.000 13.24 0.00 0.00 5.01
321 322 1.352156 GCTAGAACAAGACGGCGGTG 61.352 60.000 13.24 8.97 0.00 4.94
322 323 1.080025 GCTAGAACAAGACGGCGGT 60.080 57.895 13.24 0.00 0.00 5.68
323 324 2.158959 CGCTAGAACAAGACGGCGG 61.159 63.158 13.24 0.00 39.12 6.13
324 325 1.154093 TCGCTAGAACAAGACGGCG 60.154 57.895 4.80 4.80 43.22 6.46
325 326 2.360794 GTCGCTAGAACAAGACGGC 58.639 57.895 0.00 0.00 0.00 5.68
328 329 2.327081 TGTCGTCGCTAGAACAAGAC 57.673 50.000 0.00 0.00 0.00 3.01
329 330 3.057806 TCAATGTCGTCGCTAGAACAAGA 60.058 43.478 0.00 0.00 0.00 3.02
330 331 3.059570 GTCAATGTCGTCGCTAGAACAAG 59.940 47.826 0.00 0.00 0.00 3.16
331 332 2.984471 GTCAATGTCGTCGCTAGAACAA 59.016 45.455 0.00 0.00 0.00 2.83
332 333 2.592194 GTCAATGTCGTCGCTAGAACA 58.408 47.619 0.00 0.00 0.00 3.18
333 334 1.918609 GGTCAATGTCGTCGCTAGAAC 59.081 52.381 0.00 0.00 0.00 3.01
334 335 1.542472 TGGTCAATGTCGTCGCTAGAA 59.458 47.619 0.00 0.00 0.00 2.10
335 336 1.170442 TGGTCAATGTCGTCGCTAGA 58.830 50.000 0.00 0.00 0.00 2.43
336 337 2.209838 ATGGTCAATGTCGTCGCTAG 57.790 50.000 0.00 0.00 0.00 3.42
337 338 2.094442 TGAATGGTCAATGTCGTCGCTA 60.094 45.455 0.00 0.00 0.00 4.26
338 339 1.337728 TGAATGGTCAATGTCGTCGCT 60.338 47.619 0.00 0.00 0.00 4.93
339 340 1.061131 CTGAATGGTCAATGTCGTCGC 59.939 52.381 0.00 0.00 31.88 5.19
340 341 2.092681 CACTGAATGGTCAATGTCGTCG 59.907 50.000 0.00 0.00 31.88 5.12
341 342 2.416547 CCACTGAATGGTCAATGTCGTC 59.583 50.000 0.00 0.00 44.46 4.20
342 343 2.426522 CCACTGAATGGTCAATGTCGT 58.573 47.619 0.00 0.00 44.46 4.34
353 354 4.280929 TCGATATCCCTGTACCACTGAATG 59.719 45.833 0.00 0.00 0.00 2.67
354 355 4.480115 TCGATATCCCTGTACCACTGAAT 58.520 43.478 0.00 0.00 0.00 2.57
355 356 3.905968 TCGATATCCCTGTACCACTGAA 58.094 45.455 0.00 0.00 0.00 3.02
356 357 3.588210 TCGATATCCCTGTACCACTGA 57.412 47.619 0.00 0.00 0.00 3.41
357 358 3.615110 GCATCGATATCCCTGTACCACTG 60.615 52.174 0.00 0.00 0.00 3.66
358 359 2.563179 GCATCGATATCCCTGTACCACT 59.437 50.000 0.00 0.00 0.00 4.00
359 360 2.299013 TGCATCGATATCCCTGTACCAC 59.701 50.000 0.00 0.00 0.00 4.16
360 361 2.604139 TGCATCGATATCCCTGTACCA 58.396 47.619 0.00 0.00 0.00 3.25
361 362 3.678056 TTGCATCGATATCCCTGTACC 57.322 47.619 0.00 0.00 0.00 3.34
362 363 6.560253 AAAATTGCATCGATATCCCTGTAC 57.440 37.500 0.00 0.00 0.00 2.90
363 364 8.862325 ATAAAAATTGCATCGATATCCCTGTA 57.138 30.769 0.00 0.00 0.00 2.74
364 365 7.765695 ATAAAAATTGCATCGATATCCCTGT 57.234 32.000 0.00 0.00 0.00 4.00
389 390 9.997482 GCGAAAATACAAAGAACCTCAAATATA 57.003 29.630 0.00 0.00 0.00 0.86
390 391 8.739972 AGCGAAAATACAAAGAACCTCAAATAT 58.260 29.630 0.00 0.00 0.00 1.28
391 392 8.020819 CAGCGAAAATACAAAGAACCTCAAATA 58.979 33.333 0.00 0.00 0.00 1.40
392 393 6.863126 CAGCGAAAATACAAAGAACCTCAAAT 59.137 34.615 0.00 0.00 0.00 2.32
393 394 6.038825 TCAGCGAAAATACAAAGAACCTCAAA 59.961 34.615 0.00 0.00 0.00 2.69
394 395 5.529430 TCAGCGAAAATACAAAGAACCTCAA 59.471 36.000 0.00 0.00 0.00 3.02
395 396 5.060506 TCAGCGAAAATACAAAGAACCTCA 58.939 37.500 0.00 0.00 0.00 3.86
396 397 5.607119 TCAGCGAAAATACAAAGAACCTC 57.393 39.130 0.00 0.00 0.00 3.85
397 398 5.298276 TGTTCAGCGAAAATACAAAGAACCT 59.702 36.000 0.00 0.00 34.73 3.50
398 399 5.398416 GTGTTCAGCGAAAATACAAAGAACC 59.602 40.000 0.00 0.00 34.73 3.62
399 400 6.140737 CAGTGTTCAGCGAAAATACAAAGAAC 59.859 38.462 0.00 0.00 35.82 3.01
400 401 6.198687 CAGTGTTCAGCGAAAATACAAAGAA 58.801 36.000 0.00 0.00 0.00 2.52
401 402 5.277779 CCAGTGTTCAGCGAAAATACAAAGA 60.278 40.000 0.00 0.00 0.00 2.52
402 403 4.911610 CCAGTGTTCAGCGAAAATACAAAG 59.088 41.667 0.00 0.00 0.00 2.77
403 404 4.576873 TCCAGTGTTCAGCGAAAATACAAA 59.423 37.500 0.00 0.00 0.00 2.83
404 405 4.130857 TCCAGTGTTCAGCGAAAATACAA 58.869 39.130 0.00 0.00 0.00 2.41
405 406 3.734463 TCCAGTGTTCAGCGAAAATACA 58.266 40.909 0.00 0.00 0.00 2.29
406 407 4.154195 ACATCCAGTGTTCAGCGAAAATAC 59.846 41.667 0.00 0.00 38.01 1.89
407 408 4.154015 CACATCCAGTGTTCAGCGAAAATA 59.846 41.667 0.00 0.00 43.40 1.40
408 409 3.058016 CACATCCAGTGTTCAGCGAAAAT 60.058 43.478 0.00 0.00 43.40 1.82
409 410 2.290367 CACATCCAGTGTTCAGCGAAAA 59.710 45.455 0.00 0.00 43.40 2.29
410 411 1.872952 CACATCCAGTGTTCAGCGAAA 59.127 47.619 0.00 0.00 43.40 3.46
411 412 1.511850 CACATCCAGTGTTCAGCGAA 58.488 50.000 0.00 0.00 43.40 4.70
412 413 3.215642 CACATCCAGTGTTCAGCGA 57.784 52.632 0.00 0.00 43.40 4.93
421 422 2.338809 TGGAGAAGAACCACATCCAGT 58.661 47.619 0.00 0.00 35.16 4.00
422 423 3.423539 TTGGAGAAGAACCACATCCAG 57.576 47.619 0.00 0.00 40.93 3.86
423 424 3.874383 TTTGGAGAAGAACCACATCCA 57.126 42.857 0.00 0.00 38.26 3.41
424 425 4.398319 TCTTTTGGAGAAGAACCACATCC 58.602 43.478 0.00 0.00 37.13 3.51
432 433 5.424757 TGAACGAGTTCTTTTGGAGAAGAA 58.575 37.500 15.80 0.00 44.78 2.52
433 434 5.018539 TGAACGAGTTCTTTTGGAGAAGA 57.981 39.130 15.80 0.00 44.78 2.87
434 435 5.931441 ATGAACGAGTTCTTTTGGAGAAG 57.069 39.130 15.80 0.00 44.78 2.85
435 436 5.505654 GCAATGAACGAGTTCTTTTGGAGAA 60.506 40.000 21.62 3.27 42.03 2.87
436 437 4.024048 GCAATGAACGAGTTCTTTTGGAGA 60.024 41.667 21.62 3.79 40.14 3.71
437 438 4.222114 GCAATGAACGAGTTCTTTTGGAG 58.778 43.478 21.62 11.48 40.14 3.86
438 439 3.303725 CGCAATGAACGAGTTCTTTTGGA 60.304 43.478 21.62 4.86 40.14 3.53
439 440 2.973224 CGCAATGAACGAGTTCTTTTGG 59.027 45.455 21.62 12.17 40.14 3.28
440 441 3.617669 ACGCAATGAACGAGTTCTTTTG 58.382 40.909 15.80 17.55 40.14 2.44
451 452 0.727122 GCTGCAGTGACGCAATGAAC 60.727 55.000 16.64 0.00 42.45 3.18
458 459 1.630244 CCTAACTGCTGCAGTGACGC 61.630 60.000 33.53 1.04 44.62 5.19
474 475 1.066716 GTATGTGCAACCACGACCCTA 60.067 52.381 0.00 0.00 45.04 3.53
486 487 3.566742 ACTGATACCGATACGTATGTGCA 59.433 43.478 13.97 7.76 0.00 4.57
490 491 5.319139 CCGTTACTGATACCGATACGTATG 58.681 45.833 13.97 1.76 0.00 2.39
498 499 0.101759 GCTGCCGTTACTGATACCGA 59.898 55.000 0.00 0.00 0.00 4.69
507 508 3.196648 CCCAATGGCTGCCGTTAC 58.803 61.111 24.71 0.00 30.71 2.50
517 518 3.282157 CTGCCGATCGCCCAATGG 61.282 66.667 10.32 0.00 36.24 3.16
519 520 3.344137 AACCTGCCGATCGCCCAAT 62.344 57.895 10.32 0.00 36.24 3.16
520 521 4.028490 AACCTGCCGATCGCCCAA 62.028 61.111 10.32 0.00 36.24 4.12
573 582 2.462456 TGTTTGCTCGCTCTTCAGAT 57.538 45.000 0.00 0.00 0.00 2.90
618 628 1.269257 TGCCGATCTGCTCTTCGTATG 60.269 52.381 10.62 0.00 33.60 2.39
747 757 2.126228 TCAAGCCGCCGTCGTAAG 60.126 61.111 0.00 0.00 0.00 2.34
763 773 0.615850 AAGCTCTGTTAGGGTGCCTC 59.384 55.000 0.00 0.00 34.61 4.70
809 819 1.080434 GGTGAGACCGTGAGCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
828 838 2.677524 TTGAGCAGTGCATGGCCC 60.678 61.111 19.20 0.00 0.00 5.80
844 854 1.286248 GACATAGGGGTGGTCTGGTT 58.714 55.000 0.00 0.00 0.00 3.67
858 868 6.176896 TCGAATCCAGTCAAATTTGGACATA 58.823 36.000 17.90 2.58 45.66 2.29
885 895 1.472728 GGGGATAATATAGCGTGGCCG 60.473 57.143 0.00 0.00 37.07 6.13
892 902 1.767088 GGGGTCCGGGGATAATATAGC 59.233 57.143 0.00 0.00 0.00 2.97
942 952 1.674764 TTGGCTTGGTGTTGTGCCTG 61.675 55.000 0.00 0.00 45.11 4.85
957 968 1.202592 ACGAAATGGTTTTGGGTTGGC 60.203 47.619 0.00 0.00 0.00 4.52
993 1009 0.917259 CGGTCTTCTTCATCGCTTCG 59.083 55.000 0.00 0.00 0.00 3.79
1251 1267 1.527311 GCGAGCGATTGGATAACCTTC 59.473 52.381 0.00 0.00 37.04 3.46
1286 1326 2.754658 GGAGGAAGTCGCGGAGGA 60.755 66.667 6.13 0.00 0.00 3.71
1391 1431 0.752009 AGCGGAGGCGAATGAGTAGA 60.752 55.000 0.00 0.00 46.35 2.59
1398 1438 4.845580 CTGGCAGCGGAGGCGAAT 62.846 66.667 0.00 0.00 46.35 3.34
1414 1454 1.078143 GGAAGATGGCAAGGTCGCT 60.078 57.895 0.00 0.00 0.00 4.93
1422 1462 0.322816 GCAGGTTGAGGAAGATGGCA 60.323 55.000 0.00 0.00 0.00 4.92
1471 1511 1.202428 GGAGTCGCCGAGCTCTTTTAT 60.202 52.381 12.85 0.00 32.67 1.40
1731 1771 3.068691 TCCTTGTCTCCGCCTCCG 61.069 66.667 0.00 0.00 0.00 4.63
2220 2278 1.550130 CCACCTCCTCGGCCTTAACA 61.550 60.000 0.00 0.00 35.61 2.41
2277 2335 4.990910 ACCCTGAGTGCCCTGCCT 62.991 66.667 0.00 0.00 0.00 4.75
2278 2336 4.729918 CACCCTGAGTGCCCTGCC 62.730 72.222 0.00 0.00 40.28 4.85
2443 2501 9.145865 TGTGTTTCTAAAAAGAAAATCCAACAC 57.854 29.630 2.32 6.80 39.20 3.32
2471 2529 3.319238 AAGTTTGCGTGAGTTTCTTCG 57.681 42.857 0.00 0.00 0.00 3.79
2473 2531 5.531287 AGGAATAAGTTTGCGTGAGTTTCTT 59.469 36.000 0.00 0.00 0.00 2.52
2474 2532 5.063880 AGGAATAAGTTTGCGTGAGTTTCT 58.936 37.500 0.00 0.00 0.00 2.52
2477 2535 8.038944 TCTTATAGGAATAAGTTTGCGTGAGTT 58.961 33.333 5.34 0.00 43.45 3.01
2483 2548 6.127403 GCGTTCTTATAGGAATAAGTTTGCG 58.873 40.000 0.09 0.00 43.45 4.85
2509 2574 1.169577 ATAGAGGTAGGATGCGCTCG 58.830 55.000 9.73 0.00 0.00 5.03
2521 2586 4.543689 TCCGGAAGTGTTCATATAGAGGT 58.456 43.478 0.00 0.00 0.00 3.85
2523 2588 5.463724 GCTTTCCGGAAGTGTTCATATAGAG 59.536 44.000 17.97 8.09 37.69 2.43
2524 2589 5.128827 AGCTTTCCGGAAGTGTTCATATAGA 59.871 40.000 17.97 0.00 37.69 1.98
2540 2605 2.047274 TTCCGGCTCAGCTTTCCG 60.047 61.111 10.24 10.24 42.58 4.30
2546 2611 0.105593 TCATGATCTTCCGGCTCAGC 59.894 55.000 0.00 0.00 0.00 4.26
2562 2627 9.623000 TGATTGATGTGACTTCATTAATCTCAT 57.377 29.630 17.98 0.00 44.13 2.90
2570 2635 9.850628 CTACAAAATGATTGATGTGACTTCATT 57.149 29.630 1.83 0.00 38.35 2.57
2580 2645 8.196802 TCCGTTAGACTACAAAATGATTGATG 57.803 34.615 0.00 0.00 0.00 3.07
2581 2646 8.964476 ATCCGTTAGACTACAAAATGATTGAT 57.036 30.769 0.00 0.00 0.00 2.57
2582 2647 9.309516 GTATCCGTTAGACTACAAAATGATTGA 57.690 33.333 0.00 0.00 0.00 2.57
2592 2657 8.631480 ATGATATGTGTATCCGTTAGACTACA 57.369 34.615 0.00 0.00 36.65 2.74
2604 2669 9.256477 TCTTTTCGGTGTTATGATATGTGTATC 57.744 33.333 0.00 0.00 37.75 2.24
2607 2672 7.915293 TTCTTTTCGGTGTTATGATATGTGT 57.085 32.000 0.00 0.00 0.00 3.72
2609 2674 8.774586 GCTATTCTTTTCGGTGTTATGATATGT 58.225 33.333 0.00 0.00 0.00 2.29
2610 2675 7.952101 CGCTATTCTTTTCGGTGTTATGATATG 59.048 37.037 0.00 0.00 0.00 1.78
2611 2676 7.117812 CCGCTATTCTTTTCGGTGTTATGATAT 59.882 37.037 0.00 0.00 37.33 1.63
2612 2677 6.422701 CCGCTATTCTTTTCGGTGTTATGATA 59.577 38.462 0.00 0.00 37.33 2.15
2613 2678 5.236478 CCGCTATTCTTTTCGGTGTTATGAT 59.764 40.000 0.00 0.00 37.33 2.45
2614 2679 4.569162 CCGCTATTCTTTTCGGTGTTATGA 59.431 41.667 0.00 0.00 37.33 2.15
2615 2680 4.785341 GCCGCTATTCTTTTCGGTGTTATG 60.785 45.833 0.00 0.00 43.45 1.90
2619 2684 1.084289 GCCGCTATTCTTTTCGGTGT 58.916 50.000 0.00 0.00 43.45 4.16
2624 2689 4.089341 GTCTTTTCGCCGCTATTCTTTTC 58.911 43.478 0.00 0.00 0.00 2.29
2636 2701 3.181513 GGATTAGTTTCGGTCTTTTCGCC 60.182 47.826 0.00 0.00 0.00 5.54
2637 2702 3.434299 TGGATTAGTTTCGGTCTTTTCGC 59.566 43.478 0.00 0.00 0.00 4.70
2668 2733 0.034574 TTTGGCATATGGGTGCTCGT 60.035 50.000 4.56 0.00 44.45 4.18
2669 2734 1.267806 GATTTGGCATATGGGTGCTCG 59.732 52.381 4.56 0.00 44.45 5.03
2696 2761 2.096248 AGAACTAAGCTCCCAGACTCG 58.904 52.381 0.00 0.00 0.00 4.18
2715 2780 9.226345 GAGTAATGTTCTTGTTGTTTGAGAAAG 57.774 33.333 0.00 0.00 31.79 2.62
2722 2787 7.148086 TGCTGAAGAGTAATGTTCTTGTTGTTT 60.148 33.333 1.63 0.00 35.14 2.83
2756 2821 7.873505 GAAGTATTCTACAAGGTCTTGTGTTCT 59.126 37.037 22.28 11.12 46.04 3.01
2777 2842 8.073467 TGTTGTGACATGTATCTATGGAAGTA 57.927 34.615 0.00 0.00 32.32 2.24
2795 2860 3.384146 ACTTGTTGGAATGCATGTTGTGA 59.616 39.130 0.00 0.00 0.00 3.58
2803 2868 4.669206 ATGTTGAACTTGTTGGAATGCA 57.331 36.364 0.00 0.00 0.00 3.96
2812 2877 5.913137 TGTCCAAAGAATGTTGAACTTGT 57.087 34.783 0.00 0.00 0.00 3.16
2860 2925 5.287674 TCTTGCCTCATCATTAGGAGAAG 57.712 43.478 0.00 0.00 35.51 2.85
2877 2942 6.594159 TCAACTAACCTTGCTTAGTATCTTGC 59.406 38.462 0.00 0.00 36.17 4.01
2922 2987 8.894768 AAGACTTCATTATAGTCAATACCTGC 57.105 34.615 0.00 0.00 43.52 4.85
2999 3064 6.689554 TGTTCAAGCTTAAAATCATGCATGA 58.310 32.000 30.47 30.47 41.70 3.07
3198 3263 3.832527 TCTTTTGAAACCTTGGGAGAGG 58.167 45.455 0.00 0.00 42.75 3.69
3269 3336 6.662414 TCATCAACGTAAAGGAGCAAATAG 57.338 37.500 0.00 0.00 0.00 1.73
3353 3420 7.308469 GCACTCATATCCTTCATCTCAAATTCC 60.308 40.741 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.