Multiple sequence alignment - TraesCS3D01G279600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G279600 chr3D 100.000 3651 0 0 1 3651 387711458 387707808 0.000000e+00 6743
1 TraesCS3D01G279600 chr3D 77.001 1387 283 29 1111 2481 387770580 387769214 0.000000e+00 761
2 TraesCS3D01G279600 chr3A 95.282 1865 79 8 1093 2952 509021669 509019809 0.000000e+00 2948
3 TraesCS3D01G279600 chr3A 77.650 1302 250 34 1102 2384 509122486 509121207 0.000000e+00 754
4 TraesCS3D01G279600 chr3A 90.148 203 12 3 440 634 509028176 509027974 1.300000e-64 257
5 TraesCS3D01G279600 chr3A 87.879 132 13 3 640 771 509026156 509026028 6.310000e-33 152
6 TraesCS3D01G279600 chr3A 91.753 97 8 0 962 1058 509021767 509021671 6.360000e-28 135
7 TraesCS3D01G279600 chr3B 93.193 1954 116 14 961 2904 504067422 504069368 0.000000e+00 2856
8 TraesCS3D01G279600 chr3B 77.214 1084 219 23 1410 2479 503984633 503985702 3.120000e-170 608
9 TraesCS3D01G279600 chr3B 87.316 339 19 11 504 828 504064766 504065094 2.070000e-97 366
10 TraesCS3D01G279600 chr3B 91.908 173 11 3 2902 3073 504070796 504070966 4.710000e-59 239
11 TraesCS3D01G279600 chr3B 96.250 80 2 1 253 331 504064575 504064654 2.960000e-26 130
12 TraesCS3D01G279600 chr2D 87.478 575 62 10 3083 3651 637872276 637871706 0.000000e+00 654
13 TraesCS3D01G279600 chr2D 73.812 1073 221 44 1398 2434 598898333 598897285 1.600000e-98 370
14 TraesCS3D01G279600 chr6D 85.198 581 79 7 3073 3651 419749913 419750488 1.130000e-164 590
15 TraesCS3D01G279600 chr1D 77.087 1030 212 17 1367 2384 436098380 436097363 1.140000e-159 573
16 TraesCS3D01G279600 chr1D 73.598 1409 308 47 1108 2481 436087217 436085838 1.970000e-132 483
17 TraesCS3D01G279600 chr4D 83.190 583 85 12 3076 3651 357512444 357511868 4.180000e-144 521
18 TraesCS3D01G279600 chr1A 76.385 957 202 20 1437 2384 533265662 533264721 9.110000e-136 494
19 TraesCS3D01G279600 chr1A 73.165 1390 308 45 1111 2467 533258496 533257139 1.200000e-119 440
20 TraesCS3D01G279600 chr2B 73.609 1114 233 53 1356 2434 728197472 728196385 4.450000e-99 372


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G279600 chr3D 387707808 387711458 3650 True 6743.00 6743 100.00000 1 3651 1 chr3D.!!$R1 3650
1 TraesCS3D01G279600 chr3D 387769214 387770580 1366 True 761.00 761 77.00100 1111 2481 1 chr3D.!!$R2 1370
2 TraesCS3D01G279600 chr3A 509019809 509021767 1958 True 1541.50 2948 93.51750 962 2952 2 chr3A.!!$R2 1990
3 TraesCS3D01G279600 chr3A 509121207 509122486 1279 True 754.00 754 77.65000 1102 2384 1 chr3A.!!$R1 1282
4 TraesCS3D01G279600 chr3A 509026028 509028176 2148 True 204.50 257 89.01350 440 771 2 chr3A.!!$R3 331
5 TraesCS3D01G279600 chr3B 504064575 504070966 6391 False 897.75 2856 92.16675 253 3073 4 chr3B.!!$F2 2820
6 TraesCS3D01G279600 chr3B 503984633 503985702 1069 False 608.00 608 77.21400 1410 2479 1 chr3B.!!$F1 1069
7 TraesCS3D01G279600 chr2D 637871706 637872276 570 True 654.00 654 87.47800 3083 3651 1 chr2D.!!$R2 568
8 TraesCS3D01G279600 chr2D 598897285 598898333 1048 True 370.00 370 73.81200 1398 2434 1 chr2D.!!$R1 1036
9 TraesCS3D01G279600 chr6D 419749913 419750488 575 False 590.00 590 85.19800 3073 3651 1 chr6D.!!$F1 578
10 TraesCS3D01G279600 chr1D 436097363 436098380 1017 True 573.00 573 77.08700 1367 2384 1 chr1D.!!$R2 1017
11 TraesCS3D01G279600 chr1D 436085838 436087217 1379 True 483.00 483 73.59800 1108 2481 1 chr1D.!!$R1 1373
12 TraesCS3D01G279600 chr4D 357511868 357512444 576 True 521.00 521 83.19000 3076 3651 1 chr4D.!!$R1 575
13 TraesCS3D01G279600 chr1A 533264721 533265662 941 True 494.00 494 76.38500 1437 2384 1 chr1A.!!$R2 947
14 TraesCS3D01G279600 chr1A 533257139 533258496 1357 True 440.00 440 73.16500 1111 2467 1 chr1A.!!$R1 1356
15 TraesCS3D01G279600 chr2B 728196385 728197472 1087 True 372.00 372 73.60900 1356 2434 1 chr2B.!!$R1 1078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 799 0.03563 CTCCAAGAGGACCAGCCAAG 60.036 60.0 0.0 0.0 39.61 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 6108 0.111061 AGGCAAGGACAAGCATCACA 59.889 50.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.584418 CATGGCTCCTCGACGCTG 60.584 66.667 0.00 0.00 0.00 5.18
18 19 3.071206 ATGGCTCCTCGACGCTGT 61.071 61.111 0.00 0.00 0.00 4.40
19 20 3.069980 ATGGCTCCTCGACGCTGTC 62.070 63.158 0.00 0.00 0.00 3.51
28 29 3.969631 GACGCTGTCGAGACGATG 58.030 61.111 8.47 0.00 38.42 3.84
29 30 1.424240 GACGCTGTCGAGACGATGA 59.576 57.895 8.47 0.00 38.42 2.92
30 31 0.858135 GACGCTGTCGAGACGATGAC 60.858 60.000 8.47 0.00 38.42 3.06
31 32 1.583967 CGCTGTCGAGACGATGACC 60.584 63.158 0.00 0.00 38.42 4.02
32 33 1.226717 GCTGTCGAGACGATGACCC 60.227 63.158 0.00 0.00 38.42 4.46
33 34 1.934220 GCTGTCGAGACGATGACCCA 61.934 60.000 0.00 0.00 38.42 4.51
34 35 0.526211 CTGTCGAGACGATGACCCAA 59.474 55.000 0.00 0.00 38.42 4.12
35 36 0.963225 TGTCGAGACGATGACCCAAA 59.037 50.000 0.00 0.00 38.42 3.28
36 37 1.341852 TGTCGAGACGATGACCCAAAA 59.658 47.619 0.00 0.00 38.42 2.44
37 38 2.224090 TGTCGAGACGATGACCCAAAAA 60.224 45.455 0.00 0.00 38.42 1.94
59 60 5.418310 AAACCTTATTCACTGTGTTGACG 57.582 39.130 7.79 0.00 0.00 4.35
60 61 2.806244 ACCTTATTCACTGTGTTGACGC 59.194 45.455 7.79 0.00 0.00 5.19
61 62 3.067106 CCTTATTCACTGTGTTGACGCT 58.933 45.455 7.79 0.00 0.00 5.07
62 63 3.120546 CCTTATTCACTGTGTTGACGCTG 60.121 47.826 7.79 0.81 0.00 5.18
63 64 1.229428 ATTCACTGTGTTGACGCTGG 58.771 50.000 7.79 0.00 0.00 4.85
64 65 1.436195 TTCACTGTGTTGACGCTGGC 61.436 55.000 7.79 0.00 0.00 4.85
65 66 2.179547 CACTGTGTTGACGCTGGCA 61.180 57.895 0.00 0.00 0.00 4.92
66 67 2.180204 ACTGTGTTGACGCTGGCAC 61.180 57.895 6.54 0.00 0.00 5.01
67 68 2.896801 CTGTGTTGACGCTGGCACC 61.897 63.158 0.00 0.00 0.00 5.01
68 69 4.012895 GTGTTGACGCTGGCACCG 62.013 66.667 0.00 0.00 0.00 4.94
69 70 4.228567 TGTTGACGCTGGCACCGA 62.229 61.111 9.51 0.00 0.00 4.69
70 71 3.712881 GTTGACGCTGGCACCGAC 61.713 66.667 9.51 3.29 0.00 4.79
71 72 4.980805 TTGACGCTGGCACCGACC 62.981 66.667 9.51 1.17 0.00 4.79
73 74 4.980805 GACGCTGGCACCGACCAA 62.981 66.667 9.51 0.00 39.86 3.67
74 75 4.555709 ACGCTGGCACCGACCAAA 62.556 61.111 9.51 0.00 39.86 3.28
75 76 4.025401 CGCTGGCACCGACCAAAC 62.025 66.667 0.00 0.00 39.86 2.93
76 77 2.904866 GCTGGCACCGACCAAACA 60.905 61.111 0.00 0.00 39.86 2.83
77 78 3.030652 CTGGCACCGACCAAACAC 58.969 61.111 0.00 0.00 39.86 3.32
78 79 2.517402 TGGCACCGACCAAACACC 60.517 61.111 0.00 0.00 36.55 4.16
79 80 2.517402 GGCACCGACCAAACACCA 60.517 61.111 0.00 0.00 0.00 4.17
80 81 1.901464 GGCACCGACCAAACACCAT 60.901 57.895 0.00 0.00 0.00 3.55
81 82 1.579429 GCACCGACCAAACACCATC 59.421 57.895 0.00 0.00 0.00 3.51
82 83 1.169661 GCACCGACCAAACACCATCA 61.170 55.000 0.00 0.00 0.00 3.07
83 84 1.533625 CACCGACCAAACACCATCAT 58.466 50.000 0.00 0.00 0.00 2.45
84 85 1.468520 CACCGACCAAACACCATCATC 59.531 52.381 0.00 0.00 0.00 2.92
85 86 1.094785 CCGACCAAACACCATCATCC 58.905 55.000 0.00 0.00 0.00 3.51
86 87 0.726827 CGACCAAACACCATCATCCG 59.273 55.000 0.00 0.00 0.00 4.18
87 88 1.674519 CGACCAAACACCATCATCCGA 60.675 52.381 0.00 0.00 0.00 4.55
88 89 2.432444 GACCAAACACCATCATCCGAA 58.568 47.619 0.00 0.00 0.00 4.30
89 90 2.817258 GACCAAACACCATCATCCGAAA 59.183 45.455 0.00 0.00 0.00 3.46
90 91 3.430453 ACCAAACACCATCATCCGAAAT 58.570 40.909 0.00 0.00 0.00 2.17
91 92 4.594970 ACCAAACACCATCATCCGAAATA 58.405 39.130 0.00 0.00 0.00 1.40
92 93 4.398044 ACCAAACACCATCATCCGAAATAC 59.602 41.667 0.00 0.00 0.00 1.89
93 94 4.397730 CCAAACACCATCATCCGAAATACA 59.602 41.667 0.00 0.00 0.00 2.29
94 95 5.105957 CCAAACACCATCATCCGAAATACAA 60.106 40.000 0.00 0.00 0.00 2.41
95 96 6.385843 CAAACACCATCATCCGAAATACAAA 58.614 36.000 0.00 0.00 0.00 2.83
96 97 5.818136 ACACCATCATCCGAAATACAAAG 57.182 39.130 0.00 0.00 0.00 2.77
97 98 4.096382 ACACCATCATCCGAAATACAAAGC 59.904 41.667 0.00 0.00 0.00 3.51
98 99 4.336433 CACCATCATCCGAAATACAAAGCT 59.664 41.667 0.00 0.00 0.00 3.74
99 100 4.949856 ACCATCATCCGAAATACAAAGCTT 59.050 37.500 0.00 0.00 0.00 3.74
100 101 5.066505 ACCATCATCCGAAATACAAAGCTTC 59.933 40.000 0.00 0.00 0.00 3.86
101 102 5.066375 CCATCATCCGAAATACAAAGCTTCA 59.934 40.000 0.00 0.00 0.00 3.02
102 103 6.404623 CCATCATCCGAAATACAAAGCTTCAA 60.405 38.462 0.00 0.00 0.00 2.69
103 104 5.938322 TCATCCGAAATACAAAGCTTCAAC 58.062 37.500 0.00 0.00 0.00 3.18
104 105 4.759516 TCCGAAATACAAAGCTTCAACC 57.240 40.909 0.00 0.00 0.00 3.77
105 106 4.394729 TCCGAAATACAAAGCTTCAACCT 58.605 39.130 0.00 0.00 0.00 3.50
106 107 4.215399 TCCGAAATACAAAGCTTCAACCTG 59.785 41.667 0.00 0.00 0.00 4.00
107 108 4.215399 CCGAAATACAAAGCTTCAACCTGA 59.785 41.667 0.00 0.00 0.00 3.86
108 109 5.147162 CGAAATACAAAGCTTCAACCTGAC 58.853 41.667 0.00 0.00 0.00 3.51
109 110 5.277779 CGAAATACAAAGCTTCAACCTGACA 60.278 40.000 0.00 0.00 0.00 3.58
110 111 6.463995 AAATACAAAGCTTCAACCTGACAA 57.536 33.333 0.00 0.00 0.00 3.18
111 112 3.782889 ACAAAGCTTCAACCTGACAAC 57.217 42.857 0.00 0.00 0.00 3.32
112 113 3.088532 ACAAAGCTTCAACCTGACAACA 58.911 40.909 0.00 0.00 0.00 3.33
113 114 3.701040 ACAAAGCTTCAACCTGACAACAT 59.299 39.130 0.00 0.00 0.00 2.71
114 115 4.160252 ACAAAGCTTCAACCTGACAACATT 59.840 37.500 0.00 0.00 0.00 2.71
115 116 3.996150 AGCTTCAACCTGACAACATTG 57.004 42.857 0.00 0.00 0.00 2.82
116 117 2.624838 AGCTTCAACCTGACAACATTGG 59.375 45.455 0.00 0.00 0.00 3.16
117 118 2.622942 GCTTCAACCTGACAACATTGGA 59.377 45.455 0.00 0.00 0.00 3.53
118 119 3.256631 GCTTCAACCTGACAACATTGGAT 59.743 43.478 0.00 0.00 0.00 3.41
119 120 4.458989 GCTTCAACCTGACAACATTGGATA 59.541 41.667 0.00 0.00 0.00 2.59
120 121 5.048083 GCTTCAACCTGACAACATTGGATAA 60.048 40.000 0.00 0.00 0.00 1.75
121 122 6.516527 GCTTCAACCTGACAACATTGGATAAA 60.517 38.462 0.00 0.00 0.00 1.40
122 123 7.537596 TTCAACCTGACAACATTGGATAAAT 57.462 32.000 0.00 0.00 0.00 1.40
123 124 8.642935 TTCAACCTGACAACATTGGATAAATA 57.357 30.769 0.00 0.00 0.00 1.40
124 125 8.279970 TCAACCTGACAACATTGGATAAATAG 57.720 34.615 0.00 0.00 0.00 1.73
125 126 7.339212 TCAACCTGACAACATTGGATAAATAGG 59.661 37.037 0.00 0.00 0.00 2.57
126 127 6.129179 ACCTGACAACATTGGATAAATAGGG 58.871 40.000 0.00 0.00 0.00 3.53
127 128 6.069088 ACCTGACAACATTGGATAAATAGGGA 60.069 38.462 0.00 0.00 0.00 4.20
128 129 6.488006 CCTGACAACATTGGATAAATAGGGAG 59.512 42.308 0.00 0.00 0.00 4.30
129 130 5.827797 TGACAACATTGGATAAATAGGGAGC 59.172 40.000 0.00 0.00 0.00 4.70
130 131 5.140454 ACAACATTGGATAAATAGGGAGCC 58.860 41.667 0.00 0.00 0.00 4.70
131 132 5.139727 CAACATTGGATAAATAGGGAGCCA 58.860 41.667 0.00 0.00 0.00 4.75
132 133 5.402054 ACATTGGATAAATAGGGAGCCAA 57.598 39.130 0.00 0.00 39.45 4.52
133 134 5.388654 ACATTGGATAAATAGGGAGCCAAG 58.611 41.667 0.00 0.00 38.62 3.61
134 135 4.453480 TTGGATAAATAGGGAGCCAAGG 57.547 45.455 0.00 0.00 32.19 3.61
135 136 3.403322 TGGATAAATAGGGAGCCAAGGT 58.597 45.455 0.00 0.00 0.00 3.50
136 137 3.791545 TGGATAAATAGGGAGCCAAGGTT 59.208 43.478 0.00 0.00 0.00 3.50
137 138 4.141251 TGGATAAATAGGGAGCCAAGGTTC 60.141 45.833 0.00 0.00 0.00 3.62
138 139 2.828661 AAATAGGGAGCCAAGGTTCC 57.171 50.000 13.08 13.08 43.53 3.62
142 143 4.426313 GGAGCCAAGGTTCCCCGG 62.426 72.222 10.62 0.00 39.23 5.73
147 148 3.979497 CAAGGTTCCCCGGCCCTT 61.979 66.667 0.00 1.07 39.14 3.95
148 149 3.658422 AAGGTTCCCCGGCCCTTC 61.658 66.667 0.00 0.00 33.27 3.46
177 178 3.145551 GAGCGGCTAGGGACGGAA 61.146 66.667 0.60 0.00 45.43 4.30
178 179 3.140225 GAGCGGCTAGGGACGGAAG 62.140 68.421 0.60 0.00 45.43 3.46
179 180 4.222847 GCGGCTAGGGACGGAAGG 62.223 72.222 0.00 0.00 45.43 3.46
180 181 3.537874 CGGCTAGGGACGGAAGGG 61.538 72.222 0.00 0.00 40.87 3.95
181 182 2.042230 GGCTAGGGACGGAAGGGA 60.042 66.667 0.00 0.00 0.00 4.20
182 183 1.688187 GGCTAGGGACGGAAGGGAA 60.688 63.158 0.00 0.00 0.00 3.97
183 184 1.687297 GGCTAGGGACGGAAGGGAAG 61.687 65.000 0.00 0.00 0.00 3.46
184 185 1.823976 CTAGGGACGGAAGGGAAGC 59.176 63.158 0.00 0.00 0.00 3.86
185 186 1.687297 CTAGGGACGGAAGGGAAGCC 61.687 65.000 0.00 0.00 0.00 4.35
192 193 4.176752 GAAGGGAAGCCGGCGGAT 62.177 66.667 33.44 24.23 0.00 4.18
193 194 3.699134 GAAGGGAAGCCGGCGGATT 62.699 63.158 31.45 31.45 32.29 3.01
194 195 3.995506 AAGGGAAGCCGGCGGATTG 62.996 63.158 36.00 5.11 28.48 2.67
224 225 3.844090 GAGGGACCGCTCTGCCTC 61.844 72.222 6.81 2.83 0.00 4.70
228 229 3.518998 GACCGCTCTGCCTCGCTA 61.519 66.667 0.00 0.00 0.00 4.26
229 230 3.759766 GACCGCTCTGCCTCGCTAC 62.760 68.421 0.00 0.00 0.00 3.58
230 231 3.522731 CCGCTCTGCCTCGCTACT 61.523 66.667 0.00 0.00 0.00 2.57
231 232 2.025441 CGCTCTGCCTCGCTACTC 59.975 66.667 0.00 0.00 0.00 2.59
232 233 2.025441 GCTCTGCCTCGCTACTCG 59.975 66.667 0.00 0.00 40.15 4.18
233 234 2.025441 CTCTGCCTCGCTACTCGC 59.975 66.667 0.00 0.00 38.27 5.03
234 235 2.438614 TCTGCCTCGCTACTCGCT 60.439 61.111 0.00 0.00 38.27 4.93
235 236 1.999071 CTCTGCCTCGCTACTCGCTT 61.999 60.000 0.00 0.00 38.27 4.68
236 237 1.153745 CTGCCTCGCTACTCGCTTT 60.154 57.895 0.00 0.00 38.27 3.51
237 238 1.142778 CTGCCTCGCTACTCGCTTTC 61.143 60.000 0.00 0.00 38.27 2.62
238 239 1.878975 GCCTCGCTACTCGCTTTCC 60.879 63.158 0.00 0.00 38.27 3.13
239 240 1.511305 CCTCGCTACTCGCTTTCCA 59.489 57.895 0.00 0.00 38.27 3.53
240 241 0.526524 CCTCGCTACTCGCTTTCCAG 60.527 60.000 0.00 0.00 38.27 3.86
241 242 0.452184 CTCGCTACTCGCTTTCCAGA 59.548 55.000 0.00 0.00 38.27 3.86
242 243 0.452184 TCGCTACTCGCTTTCCAGAG 59.548 55.000 0.00 0.00 40.16 3.35
243 244 0.452184 CGCTACTCGCTTTCCAGAGA 59.548 55.000 0.00 0.00 37.87 3.10
249 250 4.511636 GCTTTCCAGAGAGAGCGG 57.488 61.111 0.00 0.00 40.09 5.52
250 251 1.893786 GCTTTCCAGAGAGAGCGGA 59.106 57.895 0.00 0.00 40.09 5.54
251 252 0.247736 GCTTTCCAGAGAGAGCGGAA 59.752 55.000 0.00 0.00 40.09 4.30
293 294 0.179225 CGAATGCAGTTGTACACGCC 60.179 55.000 0.00 0.00 0.00 5.68
326 328 3.488553 CCACGAAGAAACAACTTGAACCC 60.489 47.826 0.00 0.00 0.00 4.11
331 333 4.568152 AGAAACAACTTGAACCCGATTG 57.432 40.909 0.00 0.00 0.00 2.67
332 334 4.204012 AGAAACAACTTGAACCCGATTGA 58.796 39.130 0.00 0.00 0.00 2.57
333 335 4.275936 AGAAACAACTTGAACCCGATTGAG 59.724 41.667 0.00 0.00 0.00 3.02
334 336 3.208747 ACAACTTGAACCCGATTGAGT 57.791 42.857 0.00 0.00 0.00 3.41
335 337 3.551846 ACAACTTGAACCCGATTGAGTT 58.448 40.909 0.00 0.00 0.00 3.01
336 338 3.315191 ACAACTTGAACCCGATTGAGTTG 59.685 43.478 11.27 11.27 41.96 3.16
337 339 3.208747 ACTTGAACCCGATTGAGTTGT 57.791 42.857 0.00 0.00 0.00 3.32
338 340 4.345859 ACTTGAACCCGATTGAGTTGTA 57.654 40.909 0.00 0.00 0.00 2.41
339 341 4.315803 ACTTGAACCCGATTGAGTTGTAG 58.684 43.478 0.00 0.00 0.00 2.74
340 342 2.695359 TGAACCCGATTGAGTTGTAGC 58.305 47.619 0.00 0.00 0.00 3.58
341 343 2.007608 GAACCCGATTGAGTTGTAGCC 58.992 52.381 0.00 0.00 0.00 3.93
342 344 0.252197 ACCCGATTGAGTTGTAGCCC 59.748 55.000 0.00 0.00 0.00 5.19
343 345 0.251916 CCCGATTGAGTTGTAGCCCA 59.748 55.000 0.00 0.00 0.00 5.36
344 346 1.369625 CCGATTGAGTTGTAGCCCAC 58.630 55.000 0.00 0.00 0.00 4.61
345 347 1.338674 CCGATTGAGTTGTAGCCCACA 60.339 52.381 0.00 0.00 34.51 4.17
346 348 2.422597 CGATTGAGTTGTAGCCCACAA 58.577 47.619 0.00 0.00 44.97 3.33
358 360 3.525800 AGCCCACAAACTTAATCCAGT 57.474 42.857 0.00 0.00 0.00 4.00
361 363 3.814316 GCCCACAAACTTAATCCAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
366 368 5.049405 CACAAACTTAATCCAGTCCTGTGAC 60.049 44.000 9.06 0.00 40.11 3.67
376 378 0.595567 GTCCTGTGACGTAACGTGCA 60.596 55.000 0.00 0.00 41.37 4.57
410 415 2.028876 TCGTAGATCATCCCGAAAGCA 58.971 47.619 0.00 0.00 0.00 3.91
415 420 2.149578 GATCATCCCGAAAGCATGAGG 58.850 52.381 0.00 0.00 30.15 3.86
416 421 1.203237 TCATCCCGAAAGCATGAGGA 58.797 50.000 0.00 0.00 0.00 3.71
483 488 1.007336 CAACCGTGTAGAGCGTGACC 61.007 60.000 0.00 0.00 0.00 4.02
605 618 3.471620 ACAGTCCGTGTGCTCCAT 58.528 55.556 0.00 0.00 38.28 3.41
685 704 4.275936 AGTTTATGTCACTCAACCAGCAAC 59.724 41.667 0.00 0.00 0.00 4.17
712 731 6.378582 TGCATTTCCTTTATTCGTCTTGTTC 58.621 36.000 0.00 0.00 0.00 3.18
729 748 5.472137 TCTTGTTCTTAGAACAAAATCGGGG 59.528 40.000 31.67 21.57 39.36 5.73
737 756 1.545841 ACAAAATCGGGGGAGCTTTC 58.454 50.000 0.00 0.00 0.00 2.62
743 762 0.481128 TCGGGGGAGCTTTCCTTTTT 59.519 50.000 6.95 0.00 0.00 1.94
744 763 0.888619 CGGGGGAGCTTTCCTTTTTC 59.111 55.000 6.95 0.00 0.00 2.29
745 764 1.547901 CGGGGGAGCTTTCCTTTTTCT 60.548 52.381 6.95 0.00 0.00 2.52
746 765 2.171840 GGGGGAGCTTTCCTTTTTCTC 58.828 52.381 6.95 0.00 0.00 2.87
747 766 1.813178 GGGGAGCTTTCCTTTTTCTCG 59.187 52.381 6.95 0.00 0.00 4.04
749 768 2.885266 GGGAGCTTTCCTTTTTCTCGTT 59.115 45.455 0.00 0.00 0.00 3.85
750 769 3.304726 GGGAGCTTTCCTTTTTCTCGTTG 60.305 47.826 0.00 0.00 0.00 4.10
751 770 3.315470 GGAGCTTTCCTTTTTCTCGTTGT 59.685 43.478 0.00 0.00 0.00 3.32
764 783 0.531974 TCGTTGTTGTCCACAGCTCC 60.532 55.000 0.00 0.00 36.48 4.70
780 799 0.035630 CTCCAAGAGGACCAGCCAAG 60.036 60.000 0.00 0.00 39.61 3.61
781 800 0.473694 TCCAAGAGGACCAGCCAAGA 60.474 55.000 0.00 0.00 39.61 3.02
785 804 2.503356 CAAGAGGACCAGCCAAGATAGT 59.497 50.000 0.00 0.00 40.02 2.12
787 806 3.301274 AGAGGACCAGCCAAGATAGTAC 58.699 50.000 0.00 0.00 40.02 2.73
788 807 3.052490 AGAGGACCAGCCAAGATAGTACT 60.052 47.826 0.00 0.00 40.02 2.73
789 808 3.301274 AGGACCAGCCAAGATAGTACTC 58.699 50.000 0.00 0.00 40.02 2.59
790 809 2.365941 GGACCAGCCAAGATAGTACTCC 59.634 54.545 0.00 0.00 36.34 3.85
791 810 3.301274 GACCAGCCAAGATAGTACTCCT 58.699 50.000 0.00 0.00 0.00 3.69
792 811 4.471548 GACCAGCCAAGATAGTACTCCTA 58.528 47.826 0.00 0.00 0.00 2.94
793 812 4.216708 ACCAGCCAAGATAGTACTCCTAC 58.783 47.826 0.00 0.00 0.00 3.18
806 825 1.544691 ACTCCTACGTGAATGCTCGTT 59.455 47.619 6.05 0.00 43.18 3.85
828 847 4.029186 CGCTGGCTCGCTGCAAAA 62.029 61.111 0.00 0.00 45.15 2.44
829 848 2.570181 GCTGGCTCGCTGCAAAAT 59.430 55.556 0.00 0.00 45.15 1.82
830 849 1.804326 GCTGGCTCGCTGCAAAATG 60.804 57.895 0.00 0.00 45.15 2.32
831 850 1.804326 CTGGCTCGCTGCAAAATGC 60.804 57.895 0.00 0.00 45.15 3.56
843 2984 1.002366 CAAAATGCCCTCTCGACGAG 58.998 55.000 18.91 18.91 39.57 4.18
861 3002 2.485302 CGAGTCATTCATGGGTATGGCA 60.485 50.000 9.53 0.00 34.97 4.92
867 3008 0.111061 TCATGGGTATGGCAGGCATC 59.889 55.000 13.81 5.37 34.97 3.91
881 3022 2.730550 GGCATCACCTTTGTCCTTTG 57.269 50.000 0.00 0.00 34.51 2.77
882 3023 1.273327 GGCATCACCTTTGTCCTTTGG 59.727 52.381 0.00 0.00 34.51 3.28
885 3026 3.572255 GCATCACCTTTGTCCTTTGGTTA 59.428 43.478 0.00 0.00 0.00 2.85
886 3027 4.321230 GCATCACCTTTGTCCTTTGGTTAG 60.321 45.833 0.00 0.00 0.00 2.34
888 3029 2.955660 CACCTTTGTCCTTTGGTTAGCA 59.044 45.455 0.00 0.00 0.00 3.49
890 3031 3.826729 ACCTTTGTCCTTTGGTTAGCATC 59.173 43.478 0.00 0.00 0.00 3.91
891 3032 3.193479 CCTTTGTCCTTTGGTTAGCATCC 59.807 47.826 0.00 0.00 0.00 3.51
899 3040 4.766891 CCTTTGGTTAGCATCCTTTCTCAA 59.233 41.667 0.00 0.00 0.00 3.02
914 3055 1.188863 CTCAAAAGGGGATGGGCTTG 58.811 55.000 0.00 0.00 0.00 4.01
917 3058 0.486879 AAAAGGGGATGGGCTTGTGA 59.513 50.000 0.00 0.00 0.00 3.58
918 3059 0.251787 AAAGGGGATGGGCTTGTGAC 60.252 55.000 0.00 0.00 0.00 3.67
919 3060 2.043953 GGGGATGGGCTTGTGACC 60.044 66.667 0.00 0.00 43.36 4.02
927 3068 2.345760 GGCTTGTGACCCATGGCTG 61.346 63.158 6.09 0.00 39.73 4.85
928 3069 1.303561 GCTTGTGACCCATGGCTGA 60.304 57.895 6.09 0.00 0.00 4.26
930 3071 1.408683 GCTTGTGACCCATGGCTGATA 60.409 52.381 6.09 0.00 0.00 2.15
931 3072 2.750807 GCTTGTGACCCATGGCTGATAT 60.751 50.000 6.09 0.00 0.00 1.63
932 3073 3.496692 GCTTGTGACCCATGGCTGATATA 60.497 47.826 6.09 0.00 0.00 0.86
938 3097 4.067896 GACCCATGGCTGATATAAGTGTG 58.932 47.826 6.09 0.00 0.00 3.82
959 3118 2.025981 GTGGCTGATATATGATGGCCCA 60.026 50.000 0.00 0.00 38.89 5.36
1017 3233 0.588252 CCACTCACTCTTGCAAACCG 59.412 55.000 0.00 0.00 0.00 4.44
1043 3259 2.552315 TGAGTTCGCCAGTTTTCCATTC 59.448 45.455 0.00 0.00 0.00 2.67
1510 4003 1.803922 CATGTTCTACGCGTCCGCA 60.804 57.895 18.63 11.73 42.06 5.69
1693 4189 2.048409 AGACGAGTGCAGCAGCTG 60.048 61.111 18.93 18.93 42.74 4.24
1904 4407 1.975407 CTGGACAGGCAGCCAAAGG 60.975 63.158 15.80 2.30 32.95 3.11
1973 4476 2.585330 CTCAGCTGAGAGAGATGGCTA 58.415 52.381 35.69 0.00 44.74 3.93
2431 5001 1.730501 CGAAAGAGATGGCTGCAGAA 58.269 50.000 20.43 4.69 0.00 3.02
2482 5052 4.110036 GGCATTTTACGCCTTCTTGAAT 57.890 40.909 0.00 0.00 46.56 2.57
2601 5593 3.179925 GCAAGATGCAGTGGGATGA 57.820 52.632 0.00 0.00 44.26 2.92
2662 6092 6.973229 AATCAAAATAAATGCAGTGGCTTC 57.027 33.333 0.00 0.00 41.91 3.86
2663 6093 5.726980 TCAAAATAAATGCAGTGGCTTCT 57.273 34.783 0.00 0.00 41.91 2.85
2664 6094 5.713025 TCAAAATAAATGCAGTGGCTTCTC 58.287 37.500 0.00 0.00 41.91 2.87
2665 6095 5.477984 TCAAAATAAATGCAGTGGCTTCTCT 59.522 36.000 0.00 0.00 41.91 3.10
2666 6096 4.978083 AATAAATGCAGTGGCTTCTCTG 57.022 40.909 0.00 0.00 41.91 3.35
2667 6097 1.542492 AAATGCAGTGGCTTCTCTGG 58.458 50.000 0.00 0.00 41.91 3.86
2668 6098 0.323178 AATGCAGTGGCTTCTCTGGG 60.323 55.000 0.00 0.00 41.91 4.45
2669 6099 1.203441 ATGCAGTGGCTTCTCTGGGA 61.203 55.000 0.00 0.00 41.91 4.37
2670 6100 1.203441 TGCAGTGGCTTCTCTGGGAT 61.203 55.000 0.00 0.00 41.91 3.85
2671 6101 0.034670 GCAGTGGCTTCTCTGGGATT 60.035 55.000 0.00 0.00 36.96 3.01
2672 6102 2.016096 GCAGTGGCTTCTCTGGGATTC 61.016 57.143 0.00 0.00 36.96 2.52
2673 6103 0.915364 AGTGGCTTCTCTGGGATTCC 59.085 55.000 0.00 0.00 0.00 3.01
2674 6104 0.620556 GTGGCTTCTCTGGGATTCCA 59.379 55.000 4.80 0.00 41.58 3.53
2675 6105 1.213926 GTGGCTTCTCTGGGATTCCAT 59.786 52.381 4.80 0.00 43.11 3.41
2676 6106 1.213678 TGGCTTCTCTGGGATTCCATG 59.786 52.381 4.80 0.00 43.11 3.66
2677 6107 1.478288 GGCTTCTCTGGGATTCCATGG 60.478 57.143 4.97 4.97 43.11 3.66
2678 6108 1.213926 GCTTCTCTGGGATTCCATGGT 59.786 52.381 12.58 0.00 43.11 3.55
2679 6109 2.928334 CTTCTCTGGGATTCCATGGTG 58.072 52.381 12.58 0.00 43.11 4.17
2680 6110 1.971149 TCTCTGGGATTCCATGGTGT 58.029 50.000 12.58 0.92 43.11 4.16
2681 6111 1.561076 TCTCTGGGATTCCATGGTGTG 59.439 52.381 12.58 0.00 43.11 3.82
2682 6112 1.561076 CTCTGGGATTCCATGGTGTGA 59.439 52.381 12.58 0.00 43.11 3.58
2683 6113 2.174210 CTCTGGGATTCCATGGTGTGAT 59.826 50.000 12.58 2.04 43.11 3.06
2684 6114 2.092267 TCTGGGATTCCATGGTGTGATG 60.092 50.000 12.58 0.00 43.11 3.07
2685 6115 1.035139 GGGATTCCATGGTGTGATGC 58.965 55.000 12.58 7.29 0.00 3.91
2686 6116 1.410648 GGGATTCCATGGTGTGATGCT 60.411 52.381 12.58 0.00 0.00 3.79
2687 6117 2.381911 GGATTCCATGGTGTGATGCTT 58.618 47.619 12.58 0.00 0.00 3.91
2720 6177 2.157834 TCGCAAGATTTGTACGGTGT 57.842 45.000 0.00 0.00 45.01 4.16
2740 6197 4.083600 GCGTGCGTGCCGAATTCA 62.084 61.111 6.22 0.00 0.00 2.57
2749 6206 4.334203 TGCGTGCCGAATTCATAATTTAGT 59.666 37.500 6.22 0.00 0.00 2.24
2788 6245 2.668457 CCTTCAGTGAGACGTTGCATAC 59.332 50.000 0.00 0.00 0.00 2.39
2806 6263 5.104941 TGCATACTTCTTACTGGCAGTATGT 60.105 40.000 28.99 23.80 45.85 2.29
2821 6278 5.103000 GCAGTATGTGTACTTCAGTGTAGG 58.897 45.833 1.57 0.00 39.12 3.18
2829 6286 6.154534 TGTGTACTTCAGTGTAGGCTCATATT 59.845 38.462 1.57 0.00 0.00 1.28
2849 6306 2.865079 TCTCGTCTCACTCCTTCAGTT 58.135 47.619 0.00 0.00 30.26 3.16
2850 6307 4.017177 TCTCGTCTCACTCCTTCAGTTA 57.983 45.455 0.00 0.00 30.26 2.24
2851 6308 3.752222 TCTCGTCTCACTCCTTCAGTTAC 59.248 47.826 0.00 0.00 30.26 2.50
2852 6309 3.752665 TCGTCTCACTCCTTCAGTTACT 58.247 45.455 0.00 0.00 30.26 2.24
2853 6310 3.502595 TCGTCTCACTCCTTCAGTTACTG 59.497 47.826 5.94 5.94 30.26 2.74
2854 6311 3.502595 CGTCTCACTCCTTCAGTTACTGA 59.497 47.826 11.42 11.42 38.87 3.41
2857 6314 6.127980 CGTCTCACTCCTTCAGTTACTGATTA 60.128 42.308 16.28 1.08 40.39 1.75
2858 6315 7.030768 GTCTCACTCCTTCAGTTACTGATTAC 58.969 42.308 16.28 1.43 40.39 1.89
2900 6357 1.762858 TTCACGGGGACAGGTGACA 60.763 57.895 0.00 0.00 41.64 3.58
2904 6361 0.611714 ACGGGGACAGGTGACATTAC 59.388 55.000 0.00 0.00 0.00 1.89
2906 6363 0.899720 GGGGACAGGTGACATTACGA 59.100 55.000 0.00 0.00 0.00 3.43
2907 6364 1.276989 GGGGACAGGTGACATTACGAA 59.723 52.381 0.00 0.00 0.00 3.85
2908 6365 2.093128 GGGGACAGGTGACATTACGAAT 60.093 50.000 0.00 0.00 0.00 3.34
2909 6366 2.936498 GGGACAGGTGACATTACGAATG 59.064 50.000 0.00 0.00 44.48 2.67
2963 7851 8.684386 TGACAGTTTATTCAGACCACATAAAA 57.316 30.769 0.00 0.00 0.00 1.52
3004 7892 7.332678 GCTCAAAACTGCCATCATTCTAAAAAT 59.667 33.333 0.00 0.00 0.00 1.82
3017 7905 5.607119 TTCTAAAAATCCGTGTTGCTCTC 57.393 39.130 0.00 0.00 0.00 3.20
3026 7914 2.351447 CCGTGTTGCTCTCGAGAAACTA 60.351 50.000 23.60 11.75 45.29 2.24
3027 7915 3.502920 CGTGTTGCTCTCGAGAAACTAT 58.497 45.455 23.60 0.00 45.29 2.12
3033 7921 5.843673 TGCTCTCGAGAAACTATCATCTT 57.156 39.130 17.36 0.00 0.00 2.40
3035 7923 4.909305 GCTCTCGAGAAACTATCATCTTCG 59.091 45.833 17.36 0.34 0.00 3.79
3054 7942 8.535592 CATCTTCGATACAACTAAAACTGCTAG 58.464 37.037 0.00 0.00 0.00 3.42
3059 7947 9.263538 TCGATACAACTAAAACTGCTAGAAAAA 57.736 29.630 0.00 0.00 0.00 1.94
3106 7995 2.359107 ACGCTAGACACGTCCGGA 60.359 61.111 0.00 0.00 40.28 5.14
3129 8018 9.291664 CGGATTTAAATTAATAAAGCCACGAAA 57.708 29.630 15.04 0.00 46.67 3.46
3142 8031 1.001487 CCACGAAAGCAGCATCACAAA 60.001 47.619 0.00 0.00 0.00 2.83
3147 8036 4.036262 ACGAAAGCAGCATCACAAAGTTTA 59.964 37.500 0.00 0.00 0.00 2.01
3148 8037 5.156355 CGAAAGCAGCATCACAAAGTTTAT 58.844 37.500 0.00 0.00 0.00 1.40
3173 8062 2.249844 ACTAACACACCCAAGAACCG 57.750 50.000 0.00 0.00 0.00 4.44
3174 8063 0.872388 CTAACACACCCAAGAACCGC 59.128 55.000 0.00 0.00 0.00 5.68
3176 8065 1.101049 AACACACCCAAGAACCGCAG 61.101 55.000 0.00 0.00 0.00 5.18
3207 8098 1.743623 CTCACCGGCCATGCGTAAA 60.744 57.895 0.00 0.00 0.00 2.01
3211 8102 0.963355 ACCGGCCATGCGTAAAACAT 60.963 50.000 0.00 0.00 0.00 2.71
3217 8108 3.367498 GGCCATGCGTAAAACATAACCAA 60.367 43.478 0.00 0.00 0.00 3.67
3247 8139 4.426313 AAGGCCCCAACCTAGCGC 62.426 66.667 0.00 0.00 39.93 5.92
3259 8151 1.210478 ACCTAGCGCCTGAATGAACAT 59.790 47.619 2.29 0.00 0.00 2.71
3261 8153 1.524355 CTAGCGCCTGAATGAACATCG 59.476 52.381 2.29 0.00 0.00 3.84
3265 8157 1.731709 CGCCTGAATGAACATCGAACA 59.268 47.619 0.00 0.00 0.00 3.18
3278 8171 0.895530 TCGAACATCCCTCCTGACAC 59.104 55.000 0.00 0.00 0.00 3.67
3286 8182 1.695114 CCCTCCTGACACACCACACA 61.695 60.000 0.00 0.00 0.00 3.72
3302 8198 7.118390 CACACCACACAAAACCAAAAGATAAAA 59.882 33.333 0.00 0.00 0.00 1.52
3310 8206 7.042791 ACAAAACCAAAAGATAAAACGCTCATG 60.043 33.333 0.00 0.00 0.00 3.07
3316 8212 2.945668 AGATAAAACGCTCATGGAAGCC 59.054 45.455 1.10 0.00 39.17 4.35
3365 8261 1.282738 TGCTGGCAATCTTCTCCATCA 59.717 47.619 0.00 0.00 0.00 3.07
3413 8309 0.531090 TTTCTCCAACGGTGTCCACG 60.531 55.000 0.00 0.00 37.36 4.94
3485 8381 3.119708 GGAACTTGTGCTCCATTGTCATC 60.120 47.826 0.00 0.00 0.00 2.92
3494 8390 4.828939 TGCTCCATTGTCATCTTGTTTCTT 59.171 37.500 0.00 0.00 0.00 2.52
3506 8402 5.723672 TCTTGTTTCTTATCGTCCAGAGT 57.276 39.130 0.00 0.00 0.00 3.24
3515 8411 1.410004 TCGTCCAGAGTGACCAAAGT 58.590 50.000 0.00 0.00 31.35 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.069980 GACAGCGTCGAGGAGCCAT 62.070 63.158 9.75 0.00 0.00 4.40
2 3 3.749064 GACAGCGTCGAGGAGCCA 61.749 66.667 9.75 0.00 0.00 4.75
11 12 0.858135 GTCATCGTCTCGACAGCGTC 60.858 60.000 0.00 0.00 39.18 5.19
12 13 1.134901 GTCATCGTCTCGACAGCGT 59.865 57.895 0.00 0.00 39.18 5.07
13 14 1.583967 GGTCATCGTCTCGACAGCG 60.584 63.158 0.00 0.00 39.18 5.18
14 15 1.226717 GGGTCATCGTCTCGACAGC 60.227 63.158 0.00 0.00 39.18 4.40
15 16 0.526211 TTGGGTCATCGTCTCGACAG 59.474 55.000 0.00 0.00 39.18 3.51
16 17 0.963225 TTTGGGTCATCGTCTCGACA 59.037 50.000 0.00 0.00 39.18 4.35
17 18 2.074547 TTTTGGGTCATCGTCTCGAC 57.925 50.000 0.00 0.00 39.18 4.20
18 19 2.823924 TTTTTGGGTCATCGTCTCGA 57.176 45.000 0.00 0.00 41.13 4.04
35 36 6.262601 CGTCAACACAGTGAATAAGGTTTTT 58.737 36.000 7.81 0.00 0.00 1.94
36 37 5.732247 GCGTCAACACAGTGAATAAGGTTTT 60.732 40.000 7.81 0.00 0.00 2.43
37 38 4.261031 GCGTCAACACAGTGAATAAGGTTT 60.261 41.667 7.81 0.00 0.00 3.27
38 39 3.250040 GCGTCAACACAGTGAATAAGGTT 59.750 43.478 7.81 0.00 0.00 3.50
39 40 2.806244 GCGTCAACACAGTGAATAAGGT 59.194 45.455 7.81 0.00 0.00 3.50
40 41 3.067106 AGCGTCAACACAGTGAATAAGG 58.933 45.455 7.81 0.00 0.00 2.69
41 42 3.120546 CCAGCGTCAACACAGTGAATAAG 60.121 47.826 7.81 0.00 0.00 1.73
42 43 2.805671 CCAGCGTCAACACAGTGAATAA 59.194 45.455 7.81 0.00 0.00 1.40
43 44 2.412870 CCAGCGTCAACACAGTGAATA 58.587 47.619 7.81 0.00 0.00 1.75
44 45 1.229428 CCAGCGTCAACACAGTGAAT 58.771 50.000 7.81 0.00 0.00 2.57
45 46 1.436195 GCCAGCGTCAACACAGTGAA 61.436 55.000 7.81 0.00 0.00 3.18
46 47 1.887242 GCCAGCGTCAACACAGTGA 60.887 57.895 7.81 0.00 0.00 3.41
47 48 2.179547 TGCCAGCGTCAACACAGTG 61.180 57.895 0.00 0.00 0.00 3.66
48 49 2.180204 GTGCCAGCGTCAACACAGT 61.180 57.895 0.00 0.00 33.23 3.55
49 50 2.633657 GTGCCAGCGTCAACACAG 59.366 61.111 0.00 0.00 33.23 3.66
50 51 2.899838 GGTGCCAGCGTCAACACA 60.900 61.111 0.00 0.00 34.69 3.72
51 52 4.012895 CGGTGCCAGCGTCAACAC 62.013 66.667 8.36 0.00 33.95 3.32
52 53 4.228567 TCGGTGCCAGCGTCAACA 62.229 61.111 16.56 0.00 40.41 3.33
53 54 3.712881 GTCGGTGCCAGCGTCAAC 61.713 66.667 16.56 3.44 40.41 3.18
54 55 4.980805 GGTCGGTGCCAGCGTCAA 62.981 66.667 16.56 0.00 40.41 3.18
56 57 4.980805 TTGGTCGGTGCCAGCGTC 62.981 66.667 16.56 10.67 40.41 5.19
57 58 4.555709 TTTGGTCGGTGCCAGCGT 62.556 61.111 16.56 0.00 40.41 5.07
58 59 4.025401 GTTTGGTCGGTGCCAGCG 62.025 66.667 10.54 10.54 40.01 5.18
59 60 2.904866 TGTTTGGTCGGTGCCAGC 60.905 61.111 0.00 0.00 40.01 4.85
60 61 2.551912 GGTGTTTGGTCGGTGCCAG 61.552 63.158 0.00 0.00 40.01 4.85
61 62 2.517402 GGTGTTTGGTCGGTGCCA 60.517 61.111 0.00 0.00 36.62 4.92
62 63 1.862602 GATGGTGTTTGGTCGGTGCC 61.863 60.000 0.00 0.00 0.00 5.01
63 64 1.169661 TGATGGTGTTTGGTCGGTGC 61.170 55.000 0.00 0.00 0.00 5.01
64 65 1.468520 GATGATGGTGTTTGGTCGGTG 59.531 52.381 0.00 0.00 0.00 4.94
65 66 1.613255 GGATGATGGTGTTTGGTCGGT 60.613 52.381 0.00 0.00 0.00 4.69
66 67 1.094785 GGATGATGGTGTTTGGTCGG 58.905 55.000 0.00 0.00 0.00 4.79
67 68 0.726827 CGGATGATGGTGTTTGGTCG 59.273 55.000 0.00 0.00 0.00 4.79
68 69 2.107950 TCGGATGATGGTGTTTGGTC 57.892 50.000 0.00 0.00 0.00 4.02
69 70 2.577606 TTCGGATGATGGTGTTTGGT 57.422 45.000 0.00 0.00 0.00 3.67
70 71 4.397730 TGTATTTCGGATGATGGTGTTTGG 59.602 41.667 0.00 0.00 0.00 3.28
71 72 5.559427 TGTATTTCGGATGATGGTGTTTG 57.441 39.130 0.00 0.00 0.00 2.93
72 73 6.582677 TTTGTATTTCGGATGATGGTGTTT 57.417 33.333 0.00 0.00 0.00 2.83
73 74 5.393027 GCTTTGTATTTCGGATGATGGTGTT 60.393 40.000 0.00 0.00 0.00 3.32
74 75 4.096382 GCTTTGTATTTCGGATGATGGTGT 59.904 41.667 0.00 0.00 0.00 4.16
75 76 4.336433 AGCTTTGTATTTCGGATGATGGTG 59.664 41.667 0.00 0.00 0.00 4.17
76 77 4.526970 AGCTTTGTATTTCGGATGATGGT 58.473 39.130 0.00 0.00 0.00 3.55
77 78 5.066375 TGAAGCTTTGTATTTCGGATGATGG 59.934 40.000 0.00 0.00 0.00 3.51
78 79 6.122850 TGAAGCTTTGTATTTCGGATGATG 57.877 37.500 0.00 0.00 0.00 3.07
79 80 6.404734 GGTTGAAGCTTTGTATTTCGGATGAT 60.405 38.462 0.00 0.00 0.00 2.45
80 81 5.106317 GGTTGAAGCTTTGTATTTCGGATGA 60.106 40.000 0.00 0.00 0.00 2.92
81 82 5.095490 GGTTGAAGCTTTGTATTTCGGATG 58.905 41.667 0.00 0.00 0.00 3.51
82 83 5.010282 AGGTTGAAGCTTTGTATTTCGGAT 58.990 37.500 0.00 0.00 0.00 4.18
83 84 4.215399 CAGGTTGAAGCTTTGTATTTCGGA 59.785 41.667 0.00 0.00 0.00 4.55
84 85 4.215399 TCAGGTTGAAGCTTTGTATTTCGG 59.785 41.667 0.00 0.00 0.00 4.30
85 86 5.147162 GTCAGGTTGAAGCTTTGTATTTCG 58.853 41.667 0.00 0.00 0.00 3.46
86 87 6.072112 TGTCAGGTTGAAGCTTTGTATTTC 57.928 37.500 0.00 0.00 0.00 2.17
87 88 6.127479 TGTTGTCAGGTTGAAGCTTTGTATTT 60.127 34.615 0.00 0.00 0.00 1.40
88 89 5.359576 TGTTGTCAGGTTGAAGCTTTGTATT 59.640 36.000 0.00 0.00 0.00 1.89
89 90 4.887071 TGTTGTCAGGTTGAAGCTTTGTAT 59.113 37.500 0.00 0.00 0.00 2.29
90 91 4.265893 TGTTGTCAGGTTGAAGCTTTGTA 58.734 39.130 0.00 0.00 0.00 2.41
91 92 3.088532 TGTTGTCAGGTTGAAGCTTTGT 58.911 40.909 0.00 0.00 0.00 2.83
92 93 3.781079 TGTTGTCAGGTTGAAGCTTTG 57.219 42.857 0.00 0.00 0.00 2.77
93 94 4.441913 CCAATGTTGTCAGGTTGAAGCTTT 60.442 41.667 0.00 0.00 0.00 3.51
94 95 3.068590 CCAATGTTGTCAGGTTGAAGCTT 59.931 43.478 0.00 0.00 0.00 3.74
95 96 2.624838 CCAATGTTGTCAGGTTGAAGCT 59.375 45.455 0.00 0.00 0.00 3.74
96 97 2.622942 TCCAATGTTGTCAGGTTGAAGC 59.377 45.455 0.00 0.00 0.00 3.86
97 98 6.573664 TTATCCAATGTTGTCAGGTTGAAG 57.426 37.500 0.00 0.00 0.00 3.02
98 99 6.968263 TTTATCCAATGTTGTCAGGTTGAA 57.032 33.333 0.00 0.00 0.00 2.69
99 100 7.339212 CCTATTTATCCAATGTTGTCAGGTTGA 59.661 37.037 0.00 0.00 0.00 3.18
100 101 7.416664 CCCTATTTATCCAATGTTGTCAGGTTG 60.417 40.741 0.00 0.00 0.00 3.77
101 102 6.607198 CCCTATTTATCCAATGTTGTCAGGTT 59.393 38.462 0.00 0.00 0.00 3.50
102 103 6.069088 TCCCTATTTATCCAATGTTGTCAGGT 60.069 38.462 0.00 0.00 0.00 4.00
103 104 6.364701 TCCCTATTTATCCAATGTTGTCAGG 58.635 40.000 0.00 0.00 0.00 3.86
104 105 6.016777 GCTCCCTATTTATCCAATGTTGTCAG 60.017 42.308 0.00 0.00 0.00 3.51
105 106 5.827797 GCTCCCTATTTATCCAATGTTGTCA 59.172 40.000 0.00 0.00 0.00 3.58
106 107 5.241728 GGCTCCCTATTTATCCAATGTTGTC 59.758 44.000 0.00 0.00 0.00 3.18
107 108 5.140454 GGCTCCCTATTTATCCAATGTTGT 58.860 41.667 0.00 0.00 0.00 3.32
108 109 5.139727 TGGCTCCCTATTTATCCAATGTTG 58.860 41.667 0.00 0.00 0.00 3.33
109 110 5.402054 TGGCTCCCTATTTATCCAATGTT 57.598 39.130 0.00 0.00 0.00 2.71
110 111 5.388654 CTTGGCTCCCTATTTATCCAATGT 58.611 41.667 0.00 0.00 33.68 2.71
111 112 4.768968 CCTTGGCTCCCTATTTATCCAATG 59.231 45.833 0.00 0.00 33.68 2.82
112 113 4.420214 ACCTTGGCTCCCTATTTATCCAAT 59.580 41.667 0.00 0.00 33.68 3.16
113 114 3.791545 ACCTTGGCTCCCTATTTATCCAA 59.208 43.478 0.00 0.00 33.18 3.53
114 115 3.403322 ACCTTGGCTCCCTATTTATCCA 58.597 45.455 0.00 0.00 0.00 3.41
115 116 4.399219 GAACCTTGGCTCCCTATTTATCC 58.601 47.826 0.00 0.00 0.00 2.59
116 117 4.399219 GGAACCTTGGCTCCCTATTTATC 58.601 47.826 0.00 0.00 0.00 1.75
117 118 4.455070 GGAACCTTGGCTCCCTATTTAT 57.545 45.455 0.00 0.00 0.00 1.40
118 119 3.945640 GGAACCTTGGCTCCCTATTTA 57.054 47.619 0.00 0.00 0.00 1.40
119 120 2.828661 GGAACCTTGGCTCCCTATTT 57.171 50.000 0.00 0.00 0.00 1.40
160 161 3.140225 CTTCCGTCCCTAGCCGCTC 62.140 68.421 0.00 0.00 0.00 5.03
161 162 3.148279 CTTCCGTCCCTAGCCGCT 61.148 66.667 0.00 0.00 0.00 5.52
162 163 4.222847 CCTTCCGTCCCTAGCCGC 62.223 72.222 0.00 0.00 0.00 6.53
163 164 3.537874 CCCTTCCGTCCCTAGCCG 61.538 72.222 0.00 0.00 0.00 5.52
164 165 1.687297 CTTCCCTTCCGTCCCTAGCC 61.687 65.000 0.00 0.00 0.00 3.93
165 166 1.823976 CTTCCCTTCCGTCCCTAGC 59.176 63.158 0.00 0.00 0.00 3.42
166 167 1.687297 GGCTTCCCTTCCGTCCCTAG 61.687 65.000 0.00 0.00 0.00 3.02
167 168 1.688187 GGCTTCCCTTCCGTCCCTA 60.688 63.158 0.00 0.00 0.00 3.53
168 169 3.009714 GGCTTCCCTTCCGTCCCT 61.010 66.667 0.00 0.00 0.00 4.20
169 170 4.468689 CGGCTTCCCTTCCGTCCC 62.469 72.222 0.00 0.00 40.72 4.46
170 171 4.468689 CCGGCTTCCCTTCCGTCC 62.469 72.222 0.00 0.00 43.87 4.79
175 176 3.699134 AATCCGCCGGCTTCCCTTC 62.699 63.158 26.68 0.00 0.00 3.46
176 177 3.728373 AATCCGCCGGCTTCCCTT 61.728 61.111 26.68 7.81 0.00 3.95
177 178 4.489771 CAATCCGCCGGCTTCCCT 62.490 66.667 26.68 1.48 0.00 4.20
202 203 4.787280 AGAGCGGTCCCTCCCCAG 62.787 72.222 11.73 0.00 32.17 4.45
207 208 3.844090 GAGGCAGAGCGGTCCCTC 61.844 72.222 19.66 19.66 37.33 4.30
211 212 3.518998 TAGCGAGGCAGAGCGGTC 61.519 66.667 6.48 6.48 39.18 4.79
212 213 3.827898 GTAGCGAGGCAGAGCGGT 61.828 66.667 0.00 0.00 41.45 5.68
213 214 3.477224 GAGTAGCGAGGCAGAGCGG 62.477 68.421 0.00 0.00 38.61 5.52
214 215 2.025441 GAGTAGCGAGGCAGAGCG 59.975 66.667 0.00 0.00 38.61 5.03
215 216 2.025441 CGAGTAGCGAGGCAGAGC 59.975 66.667 0.00 0.00 44.57 4.09
216 217 2.025441 GCGAGTAGCGAGGCAGAG 59.975 66.667 0.00 0.00 44.57 3.35
226 227 2.223479 GCTCTCTCTGGAAAGCGAGTAG 60.223 54.545 0.00 0.00 32.01 2.57
227 228 1.746220 GCTCTCTCTGGAAAGCGAGTA 59.254 52.381 0.00 0.00 32.01 2.59
228 229 0.530288 GCTCTCTCTGGAAAGCGAGT 59.470 55.000 0.00 0.00 32.01 4.18
229 230 3.344064 GCTCTCTCTGGAAAGCGAG 57.656 57.895 0.00 0.00 32.45 5.03
232 233 0.247736 TTCCGCTCTCTCTGGAAAGC 59.752 55.000 0.00 0.00 38.77 3.51
233 234 1.548269 ACTTCCGCTCTCTCTGGAAAG 59.452 52.381 0.00 0.00 41.02 2.62
234 235 1.633774 ACTTCCGCTCTCTCTGGAAA 58.366 50.000 0.00 0.00 41.02 3.13
235 236 1.633774 AACTTCCGCTCTCTCTGGAA 58.366 50.000 0.00 0.00 39.38 3.53
236 237 2.093106 GTAACTTCCGCTCTCTCTGGA 58.907 52.381 0.00 0.00 0.00 3.86
237 238 1.819288 TGTAACTTCCGCTCTCTCTGG 59.181 52.381 0.00 0.00 0.00 3.86
238 239 2.729467 CGTGTAACTTCCGCTCTCTCTG 60.729 54.545 0.00 0.00 31.75 3.35
239 240 1.469308 CGTGTAACTTCCGCTCTCTCT 59.531 52.381 0.00 0.00 31.75 3.10
240 241 1.467734 TCGTGTAACTTCCGCTCTCTC 59.532 52.381 0.00 0.00 31.75 3.20
241 242 1.531423 TCGTGTAACTTCCGCTCTCT 58.469 50.000 0.00 0.00 31.75 3.10
242 243 2.452105 GATCGTGTAACTTCCGCTCTC 58.548 52.381 0.00 0.00 31.75 3.20
243 244 1.134560 GGATCGTGTAACTTCCGCTCT 59.865 52.381 0.00 0.00 29.09 4.09
244 245 1.557651 GGATCGTGTAACTTCCGCTC 58.442 55.000 0.00 0.00 29.09 5.03
245 246 3.735181 GGATCGTGTAACTTCCGCT 57.265 52.632 0.00 0.00 29.09 5.52
248 249 3.992427 AGAAAACGGATCGTGTAACTTCC 59.008 43.478 0.00 0.00 39.99 3.46
249 250 4.922103 AGAGAAAACGGATCGTGTAACTTC 59.078 41.667 0.00 0.00 39.99 3.01
250 251 4.879598 AGAGAAAACGGATCGTGTAACTT 58.120 39.130 0.00 0.00 39.99 2.66
251 252 4.516365 AGAGAAAACGGATCGTGTAACT 57.484 40.909 0.00 0.00 39.99 2.24
293 294 1.083657 CTTCGTGGTTGTTGCGTCG 60.084 57.895 0.00 0.00 0.00 5.12
326 328 2.093306 TGTGGGCTACAACTCAATCG 57.907 50.000 0.00 0.00 36.06 3.34
335 337 4.202524 ACTGGATTAAGTTTGTGGGCTACA 60.203 41.667 0.00 0.00 37.56 2.74
336 338 4.332828 ACTGGATTAAGTTTGTGGGCTAC 58.667 43.478 0.00 0.00 0.00 3.58
337 339 4.566907 GGACTGGATTAAGTTTGTGGGCTA 60.567 45.833 0.00 0.00 0.00 3.93
338 340 3.421844 GACTGGATTAAGTTTGTGGGCT 58.578 45.455 0.00 0.00 0.00 5.19
339 341 2.492088 GGACTGGATTAAGTTTGTGGGC 59.508 50.000 0.00 0.00 0.00 5.36
340 342 3.758554 CAGGACTGGATTAAGTTTGTGGG 59.241 47.826 0.00 0.00 0.00 4.61
341 343 4.216257 CACAGGACTGGATTAAGTTTGTGG 59.784 45.833 4.14 0.00 39.67 4.17
342 344 5.049405 GTCACAGGACTGGATTAAGTTTGTG 60.049 44.000 4.14 12.77 41.98 3.33
343 345 5.063880 GTCACAGGACTGGATTAAGTTTGT 58.936 41.667 4.14 0.00 40.99 2.83
344 346 4.152402 CGTCACAGGACTGGATTAAGTTTG 59.848 45.833 4.14 0.00 42.05 2.93
345 347 4.202326 ACGTCACAGGACTGGATTAAGTTT 60.202 41.667 4.14 0.00 42.05 2.66
346 348 3.323979 ACGTCACAGGACTGGATTAAGTT 59.676 43.478 4.14 0.00 42.05 2.66
347 349 2.897969 ACGTCACAGGACTGGATTAAGT 59.102 45.455 4.14 0.00 42.05 2.24
348 350 3.594603 ACGTCACAGGACTGGATTAAG 57.405 47.619 4.14 0.00 42.05 1.85
349 351 4.616604 CGTTACGTCACAGGACTGGATTAA 60.617 45.833 4.14 0.00 42.05 1.40
350 352 3.119743 CGTTACGTCACAGGACTGGATTA 60.120 47.826 4.14 0.00 42.05 1.75
351 353 2.352421 CGTTACGTCACAGGACTGGATT 60.352 50.000 4.14 0.00 42.05 3.01
352 354 1.201647 CGTTACGTCACAGGACTGGAT 59.798 52.381 4.14 0.00 42.05 3.41
353 355 0.594602 CGTTACGTCACAGGACTGGA 59.405 55.000 4.14 0.00 42.05 3.86
354 356 0.313043 ACGTTACGTCACAGGACTGG 59.687 55.000 3.95 0.00 42.05 4.00
358 360 0.315886 ATGCACGTTACGTCACAGGA 59.684 50.000 7.67 0.00 38.32 3.86
361 363 2.030981 TGTCTATGCACGTTACGTCACA 60.031 45.455 7.67 10.07 38.32 3.58
366 368 4.640805 AGTTTTGTCTATGCACGTTACG 57.359 40.909 2.19 2.19 0.00 3.18
410 415 5.104776 TGAGCTAGCATGTAAGTTTCCTCAT 60.105 40.000 18.83 0.00 0.00 2.90
429 434 5.426504 CTGATCCTCACTTTAACATGAGCT 58.573 41.667 0.00 0.00 40.92 4.09
458 463 0.512952 GCTCTACACGGTTGTTGCAG 59.487 55.000 0.00 0.00 37.15 4.41
483 488 3.289834 GGGCGCTACATGCATGGG 61.290 66.667 29.41 21.41 43.06 4.00
500 505 4.635765 TCAAAATTCAGTCCCAGATTAGCG 59.364 41.667 0.00 0.00 0.00 4.26
597 610 0.242017 GTTGGCTGACAATGGAGCAC 59.758 55.000 0.00 0.00 41.95 4.40
622 635 2.244651 GCGTGGTTGAGCTGTCGTT 61.245 57.895 0.00 0.00 0.00 3.85
685 704 6.863126 ACAAGACGAATAAAGGAAATGCAAAG 59.137 34.615 0.00 0.00 0.00 2.77
712 731 2.683362 GCTCCCCCGATTTTGTTCTAAG 59.317 50.000 0.00 0.00 0.00 2.18
723 742 0.704664 AAAAGGAAAGCTCCCCCGAT 59.295 50.000 1.81 0.00 43.64 4.18
729 748 3.315470 ACAACGAGAAAAAGGAAAGCTCC 59.685 43.478 0.00 0.00 42.81 4.70
737 756 3.127895 TGTGGACAACAACGAGAAAAAGG 59.872 43.478 0.00 0.00 35.24 3.11
743 762 0.464036 AGCTGTGGACAACAACGAGA 59.536 50.000 0.00 0.00 38.67 4.04
744 763 0.861837 GAGCTGTGGACAACAACGAG 59.138 55.000 0.00 0.00 38.67 4.18
745 764 0.531974 GGAGCTGTGGACAACAACGA 60.532 55.000 0.00 0.00 38.67 3.85
746 765 0.813610 TGGAGCTGTGGACAACAACG 60.814 55.000 0.00 0.00 38.67 4.10
747 766 1.334869 CTTGGAGCTGTGGACAACAAC 59.665 52.381 0.00 0.00 38.67 3.32
749 768 0.836606 TCTTGGAGCTGTGGACAACA 59.163 50.000 0.00 0.00 37.22 3.33
750 769 1.517242 CTCTTGGAGCTGTGGACAAC 58.483 55.000 0.00 0.00 0.00 3.32
751 770 0.397941 CCTCTTGGAGCTGTGGACAA 59.602 55.000 0.00 0.00 34.57 3.18
764 783 2.503356 ACTATCTTGGCTGGTCCTCTTG 59.497 50.000 0.00 0.00 35.26 3.02
780 799 5.615106 CGAGCATTCACGTAGGAGTACTATC 60.615 48.000 0.00 0.00 33.43 2.08
781 800 4.213694 CGAGCATTCACGTAGGAGTACTAT 59.786 45.833 0.00 0.00 33.43 2.12
785 804 2.362736 ACGAGCATTCACGTAGGAGTA 58.637 47.619 0.00 0.00 40.92 2.59
787 806 1.920574 CAACGAGCATTCACGTAGGAG 59.079 52.381 0.00 0.00 41.87 3.69
788 807 1.403647 CCAACGAGCATTCACGTAGGA 60.404 52.381 0.00 0.00 41.87 2.94
789 808 0.999406 CCAACGAGCATTCACGTAGG 59.001 55.000 0.00 0.00 41.87 3.18
790 809 0.999406 CCCAACGAGCATTCACGTAG 59.001 55.000 0.00 0.00 41.87 3.51
791 810 0.319083 ACCCAACGAGCATTCACGTA 59.681 50.000 0.00 0.00 41.87 3.57
792 811 0.949105 GACCCAACGAGCATTCACGT 60.949 55.000 0.00 0.00 44.57 4.49
793 812 1.787847 GACCCAACGAGCATTCACG 59.212 57.895 0.00 0.00 0.00 4.35
843 2984 2.233271 CCTGCCATACCCATGAATGAC 58.767 52.381 0.00 0.00 33.67 3.06
867 3008 2.955660 TGCTAACCAAAGGACAAAGGTG 59.044 45.455 0.00 0.00 33.93 4.00
874 3015 4.336280 AGAAAGGATGCTAACCAAAGGAC 58.664 43.478 0.00 0.00 0.00 3.85
878 3019 6.723298 TTTTGAGAAAGGATGCTAACCAAA 57.277 33.333 0.00 0.00 0.00 3.28
879 3020 6.331369 CTTTTGAGAAAGGATGCTAACCAA 57.669 37.500 0.00 0.00 38.86 3.67
880 3021 5.964958 CTTTTGAGAAAGGATGCTAACCA 57.035 39.130 0.00 0.00 38.86 3.67
891 3032 1.827344 GCCCATCCCCTTTTGAGAAAG 59.173 52.381 0.00 0.00 41.56 2.62
899 3040 0.251787 GTCACAAGCCCATCCCCTTT 60.252 55.000 0.00 0.00 0.00 3.11
914 3055 4.067896 CACTTATATCAGCCATGGGTCAC 58.932 47.826 15.07 0.00 0.00 3.67
917 3058 3.459598 ACACACTTATATCAGCCATGGGT 59.540 43.478 11.62 11.62 0.00 4.51
918 3059 3.817084 CACACACTTATATCAGCCATGGG 59.183 47.826 15.13 0.00 0.00 4.00
919 3060 3.817084 CCACACACTTATATCAGCCATGG 59.183 47.826 7.63 7.63 0.00 3.66
922 3063 2.505407 AGCCACACACTTATATCAGCCA 59.495 45.455 0.00 0.00 0.00 4.75
924 3065 3.797039 TCAGCCACACACTTATATCAGC 58.203 45.455 0.00 0.00 0.00 4.26
928 3069 9.828039 CATCATATATCAGCCACACACTTATAT 57.172 33.333 0.00 0.00 0.00 0.86
930 3071 7.108194 CCATCATATATCAGCCACACACTTAT 58.892 38.462 0.00 0.00 0.00 1.73
931 3072 6.466812 CCATCATATATCAGCCACACACTTA 58.533 40.000 0.00 0.00 0.00 2.24
932 3073 5.311265 CCATCATATATCAGCCACACACTT 58.689 41.667 0.00 0.00 0.00 3.16
938 3097 2.025981 TGGGCCATCATATATCAGCCAC 60.026 50.000 0.00 4.76 42.29 5.01
959 3118 4.449131 CTCGGCAATCATATATCAGCCAT 58.551 43.478 12.23 0.00 42.10 4.40
1017 3233 0.663153 AAACTGGCGAACTCAAGTGC 59.337 50.000 0.00 0.00 0.00 4.40
1086 3302 2.882677 ATGCCGGCTCACAGTCACA 61.883 57.895 29.70 2.45 0.00 3.58
1165 3381 4.691359 AAGGCCTTGGCCAGCTGG 62.691 66.667 29.34 29.34 38.53 4.85
1633 4129 3.211963 GCCATGGTGTCCGGCATC 61.212 66.667 14.67 0.00 45.52 3.91
1904 4407 0.389166 CAGAGGAACACCACGCTCTC 60.389 60.000 0.00 0.00 0.00 3.20
1973 4476 1.321074 CCGGAGTTCTCTAACCCGCT 61.321 60.000 0.00 0.00 42.88 5.52
2056 4571 2.217038 AGGAAGCAACGCCTCCAGA 61.217 57.895 6.40 0.00 41.28 3.86
2431 5001 1.142688 ACCCACCTTCCTTGATGGCT 61.143 55.000 0.00 0.00 35.26 4.75
2482 5052 4.872124 CGAGATTGTTCATCTTCCACATGA 59.128 41.667 0.00 0.00 42.92 3.07
2598 5590 5.752036 TCTGAGAAAGAGTGAACCATCAT 57.248 39.130 0.00 0.00 38.01 2.45
2637 6067 7.662669 AGAAGCCACTGCATTTATTTTGATTTT 59.337 29.630 0.00 0.00 41.13 1.82
2647 6077 2.618816 CCCAGAGAAGCCACTGCATTTA 60.619 50.000 0.00 0.00 41.13 1.40
2649 6079 0.323178 CCCAGAGAAGCCACTGCATT 60.323 55.000 0.00 0.00 41.13 3.56
2666 6096 1.035139 GCATCACACCATGGAATCCC 58.965 55.000 21.47 0.00 0.00 3.85
2667 6097 2.062971 AGCATCACACCATGGAATCC 57.937 50.000 21.47 0.00 0.00 3.01
2668 6098 2.756760 ACAAGCATCACACCATGGAATC 59.243 45.455 21.47 0.00 0.00 2.52
2669 6099 2.756760 GACAAGCATCACACCATGGAAT 59.243 45.455 21.47 2.09 0.00 3.01
2670 6100 2.161855 GACAAGCATCACACCATGGAA 58.838 47.619 21.47 0.60 0.00 3.53
2671 6101 1.614051 GGACAAGCATCACACCATGGA 60.614 52.381 21.47 0.00 0.00 3.41
2672 6102 0.813184 GGACAAGCATCACACCATGG 59.187 55.000 11.19 11.19 0.00 3.66
2673 6103 1.830279 AGGACAAGCATCACACCATG 58.170 50.000 0.00 0.00 0.00 3.66
2674 6104 2.165167 CAAGGACAAGCATCACACCAT 58.835 47.619 0.00 0.00 0.00 3.55
2675 6105 1.608055 CAAGGACAAGCATCACACCA 58.392 50.000 0.00 0.00 0.00 4.17
2676 6106 0.242017 GCAAGGACAAGCATCACACC 59.758 55.000 0.00 0.00 0.00 4.16
2677 6107 0.242017 GGCAAGGACAAGCATCACAC 59.758 55.000 0.00 0.00 0.00 3.82
2678 6108 0.111061 AGGCAAGGACAAGCATCACA 59.889 50.000 0.00 0.00 0.00 3.58
2679 6109 0.807496 GAGGCAAGGACAAGCATCAC 59.193 55.000 0.00 0.00 40.89 3.06
2680 6110 0.694771 AGAGGCAAGGACAAGCATCA 59.305 50.000 0.00 0.00 43.39 3.07
2681 6111 1.831580 AAGAGGCAAGGACAAGCATC 58.168 50.000 0.00 0.00 41.46 3.91
2682 6112 2.165998 GAAAGAGGCAAGGACAAGCAT 58.834 47.619 0.00 0.00 0.00 3.79
2683 6113 1.609208 GAAAGAGGCAAGGACAAGCA 58.391 50.000 0.00 0.00 0.00 3.91
2684 6114 0.519077 CGAAAGAGGCAAGGACAAGC 59.481 55.000 0.00 0.00 0.00 4.01
2685 6115 0.519077 GCGAAAGAGGCAAGGACAAG 59.481 55.000 0.00 0.00 0.00 3.16
2686 6116 0.179032 TGCGAAAGAGGCAAGGACAA 60.179 50.000 0.00 0.00 37.49 3.18
2687 6117 0.179032 TTGCGAAAGAGGCAAGGACA 60.179 50.000 0.00 0.00 44.79 4.02
2732 6189 8.397906 TGCAGAAGAACTAAATTATGAATTCGG 58.602 33.333 0.04 0.00 0.00 4.30
2740 6197 7.977853 CCAAATGCTGCAGAAGAACTAAATTAT 59.022 33.333 20.43 0.00 0.00 1.28
2749 6206 0.604578 GGCCAAATGCTGCAGAAGAA 59.395 50.000 20.43 0.00 40.92 2.52
2788 6245 5.967088 AGTACACATACTGCCAGTAAGAAG 58.033 41.667 13.60 8.07 40.32 2.85
2806 6263 6.607600 AGAATATGAGCCTACACTGAAGTACA 59.392 38.462 0.00 0.00 0.00 2.90
2821 6278 3.568007 AGGAGTGAGACGAGAATATGAGC 59.432 47.826 0.00 0.00 0.00 4.26
2829 6286 2.570415 ACTGAAGGAGTGAGACGAGA 57.430 50.000 0.00 0.00 31.75 4.04
2849 6306 8.651389 CCAGAGGATCCTATTTTGTAATCAGTA 58.349 37.037 16.16 0.00 33.66 2.74
2850 6307 7.512992 CCAGAGGATCCTATTTTGTAATCAGT 58.487 38.462 16.16 0.00 33.66 3.41
2851 6308 6.429385 GCCAGAGGATCCTATTTTGTAATCAG 59.571 42.308 16.16 0.00 33.66 2.90
2852 6309 6.101734 AGCCAGAGGATCCTATTTTGTAATCA 59.898 38.462 16.16 0.00 33.66 2.57
2853 6310 6.429385 CAGCCAGAGGATCCTATTTTGTAATC 59.571 42.308 16.16 0.00 33.66 1.75
2854 6311 6.101734 TCAGCCAGAGGATCCTATTTTGTAAT 59.898 38.462 16.16 0.00 33.66 1.89
2857 6314 3.782523 TCAGCCAGAGGATCCTATTTTGT 59.217 43.478 16.16 0.00 33.66 2.83
2858 6315 4.133078 GTCAGCCAGAGGATCCTATTTTG 58.867 47.826 16.16 9.53 33.66 2.44
2900 6357 9.825972 CTAAAACTGTCATCAAACATTCGTAAT 57.174 29.630 0.00 0.00 0.00 1.89
2904 6361 7.113404 CCAACTAAAACTGTCATCAAACATTCG 59.887 37.037 0.00 0.00 0.00 3.34
2906 6363 7.781056 ACCAACTAAAACTGTCATCAAACATT 58.219 30.769 0.00 0.00 0.00 2.71
2907 6364 7.346751 ACCAACTAAAACTGTCATCAAACAT 57.653 32.000 0.00 0.00 0.00 2.71
2908 6365 6.457663 CGACCAACTAAAACTGTCATCAAACA 60.458 38.462 0.00 0.00 0.00 2.83
2909 6366 5.907391 CGACCAACTAAAACTGTCATCAAAC 59.093 40.000 0.00 0.00 0.00 2.93
2963 7851 7.467947 GCAGTTTTGAGCTTTCTTTCTAGAAGT 60.468 37.037 5.12 0.00 41.25 3.01
2970 7858 4.045636 TGGCAGTTTTGAGCTTTCTTTC 57.954 40.909 0.00 0.00 0.00 2.62
3004 7892 0.671796 TTTCTCGAGAGCAACACGGA 59.328 50.000 15.94 0.00 33.71 4.69
3017 7905 7.858382 AGTTGTATCGAAGATGATAGTTTCTCG 59.142 37.037 0.00 0.00 45.12 4.04
3026 7914 7.766278 AGCAGTTTTAGTTGTATCGAAGATGAT 59.234 33.333 0.00 0.00 45.12 2.45
3027 7915 7.097192 AGCAGTTTTAGTTGTATCGAAGATGA 58.903 34.615 0.00 0.00 45.12 2.92
3033 7921 8.821147 TTTTCTAGCAGTTTTAGTTGTATCGA 57.179 30.769 0.00 0.00 0.00 3.59
3081 7970 1.002033 ACGTGTCTAGCGTCTTCGTTT 60.002 47.619 0.00 0.00 38.23 3.60
3098 7987 7.067251 TGGCTTTATTAATTTAAATCCGGACGT 59.933 33.333 6.12 0.00 32.48 4.34
3106 7995 9.646427 TGCTTTCGTGGCTTTATTAATTTAAAT 57.354 25.926 0.00 0.00 0.00 1.40
3129 8018 6.980593 TGTTTATAAACTTTGTGATGCTGCT 58.019 32.000 24.81 0.00 39.59 4.24
3142 8031 8.522542 TTGGGTGTGTTAGTTGTTTATAAACT 57.477 30.769 24.81 10.88 40.82 2.66
3147 8036 6.040054 GGTTCTTGGGTGTGTTAGTTGTTTAT 59.960 38.462 0.00 0.00 0.00 1.40
3148 8037 5.357596 GGTTCTTGGGTGTGTTAGTTGTTTA 59.642 40.000 0.00 0.00 0.00 2.01
3176 8065 2.265904 GGTGAGGCCGGTTGAAACC 61.266 63.158 1.90 1.88 45.76 3.27
3190 8079 1.302591 TTTTACGCATGGCCGGTGA 60.303 52.632 14.02 0.00 0.00 4.02
3200 8089 6.038382 TCTGAACTTTGGTTATGTTTTACGCA 59.962 34.615 0.00 0.00 35.58 5.24
3207 8098 5.690865 TGTCCTCTGAACTTTGGTTATGTT 58.309 37.500 0.00 0.00 35.58 2.71
3211 8102 4.714632 CCTTGTCCTCTGAACTTTGGTTA 58.285 43.478 0.00 0.00 35.58 2.85
3217 8108 0.402121 GGGCCTTGTCCTCTGAACTT 59.598 55.000 0.84 0.00 0.00 2.66
3247 8139 3.313526 GGGATGTTCGATGTTCATTCAGG 59.686 47.826 0.00 0.00 0.00 3.86
3259 8151 0.895530 GTGTCAGGAGGGATGTTCGA 59.104 55.000 0.00 0.00 0.00 3.71
3261 8153 1.339151 GGTGTGTCAGGAGGGATGTTC 60.339 57.143 0.00 0.00 0.00 3.18
3265 8157 0.473694 TGTGGTGTGTCAGGAGGGAT 60.474 55.000 0.00 0.00 0.00 3.85
3278 8171 7.460296 GTTTTATCTTTTGGTTTTGTGTGGTG 58.540 34.615 0.00 0.00 0.00 4.17
3286 8182 6.423604 CCATGAGCGTTTTATCTTTTGGTTTT 59.576 34.615 0.00 0.00 0.00 2.43
3302 8198 1.377725 CTTGGGCTTCCATGAGCGT 60.378 57.895 0.00 0.00 43.62 5.07
3316 8212 2.213499 AGACTTCGTCAAGCAACTTGG 58.787 47.619 7.44 0.00 41.33 3.61
3322 8218 0.671796 TTCCGAGACTTCGTCAAGCA 59.328 50.000 0.00 0.00 45.28 3.91
3383 8279 7.054124 ACACCGTTGGAGAAACAATATGATAT 58.946 34.615 0.00 0.00 38.84 1.63
3384 8280 6.411376 ACACCGTTGGAGAAACAATATGATA 58.589 36.000 0.00 0.00 38.84 2.15
3388 8284 4.007659 GGACACCGTTGGAGAAACAATAT 58.992 43.478 0.00 0.00 38.84 1.28
3398 8294 2.129146 AGACGTGGACACCGTTGGA 61.129 57.895 0.00 0.00 38.92 3.53
3437 8333 4.156008 GCTAACCCGACTGATGTCATTTTT 59.844 41.667 0.00 0.00 43.06 1.94
3485 8381 5.346281 GTCACTCTGGACGATAAGAAACAAG 59.654 44.000 0.00 0.00 0.00 3.16
3494 8390 3.162666 ACTTTGGTCACTCTGGACGATA 58.837 45.455 0.00 0.00 38.70 2.92
3506 8402 2.790433 GTGGGAGCATTACTTTGGTCA 58.210 47.619 6.06 0.00 44.08 4.02
3574 8470 0.608035 GGGGGCTGAATTGTTGACGA 60.608 55.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.