Multiple sequence alignment - TraesCS3D01G279200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G279200 chr3D 100.000 2585 0 0 1 2585 386775533 386778117 0.000000e+00 4774.0
1 TraesCS3D01G279200 chr3B 94.807 1502 43 16 440 1929 503030070 503031548 0.000000e+00 2309.0
2 TraesCS3D01G279200 chr3B 84.127 126 14 5 2065 2184 503032182 503032307 1.630000e-22 117.0
3 TraesCS3D01G279200 chr3A 93.720 1449 50 20 440 1869 508215734 508217160 0.000000e+00 2134.0
4 TraesCS3D01G279200 chr3A 88.352 352 25 12 1854 2196 508217303 508217647 2.390000e-110 409.0
5 TraesCS3D01G279200 chr3A 85.507 276 26 6 1 263 508215466 508215740 2.530000e-70 276.0
6 TraesCS3D01G279200 chr3A 82.432 74 11 1 367 440 60669835 60669764 2.150000e-06 63.9
7 TraesCS3D01G279200 chrUn 81.481 189 24 6 256 437 70301800 70301616 7.460000e-31 145.0
8 TraesCS3D01G279200 chr1B 80.000 205 26 5 253 446 673570372 673570572 1.250000e-28 137.0
9 TraesCS3D01G279200 chr7A 80.663 181 25 5 264 437 28417390 28417213 5.800000e-27 132.0
10 TraesCS3D01G279200 chr5A 77.778 189 28 10 263 441 116694014 116694198 1.270000e-18 104.0
11 TraesCS3D01G279200 chr5A 77.778 189 28 10 263 441 116773346 116773530 1.270000e-18 104.0
12 TraesCS3D01G279200 chr1D 89.855 69 5 2 354 422 487353352 487353418 1.270000e-13 87.9
13 TraesCS3D01G279200 chr6A 87.500 56 5 1 382 437 398259218 398259271 2.150000e-06 63.9
14 TraesCS3D01G279200 chr2A 100.000 28 0 0 395 422 669581153 669581126 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G279200 chr3D 386775533 386778117 2584 False 4774.000000 4774 100.000 1 2585 1 chr3D.!!$F1 2584
1 TraesCS3D01G279200 chr3B 503030070 503032307 2237 False 1213.000000 2309 89.467 440 2184 2 chr3B.!!$F1 1744
2 TraesCS3D01G279200 chr3A 508215466 508217647 2181 False 939.666667 2134 89.193 1 2196 3 chr3A.!!$F1 2195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 450 0.326264 AGATGGGTGCAAGACAGACC 59.674 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 3097 0.031043 GCATGCACAGCACAGAAACA 59.969 50.0 14.21 0.0 43.04 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.915667 CGTAGACTTTTCAGTTGTCATCGA 59.084 41.667 0.00 0.00 34.17 3.59
49 50 4.471904 TTGTCATCGACAAGATTAGGCT 57.528 40.909 5.47 0.00 45.88 4.58
51 52 3.447229 TGTCATCGACAAGATTAGGCTGA 59.553 43.478 0.00 0.00 39.78 4.26
53 54 3.701542 TCATCGACAAGATTAGGCTGACT 59.298 43.478 0.00 0.00 37.52 3.41
55 56 2.427453 TCGACAAGATTAGGCTGACTCC 59.573 50.000 0.00 0.00 0.00 3.85
95 96 4.961511 TGCGTCGGCAGCTCGTTT 62.962 61.111 5.53 0.00 46.21 3.60
115 116 2.671619 GCGGCTGCCTGGTTGTTA 60.672 61.111 17.92 0.00 33.98 2.41
167 168 8.865590 TTTATTACTTTTGAGGTGCTTTGTTC 57.134 30.769 0.00 0.00 0.00 3.18
169 170 2.099098 ACTTTTGAGGTGCTTTGTTCGG 59.901 45.455 0.00 0.00 0.00 4.30
171 172 1.305201 TTGAGGTGCTTTGTTCGGTC 58.695 50.000 0.00 0.00 0.00 4.79
183 184 4.661993 TTGTTCGGTCGATGAATCTTTG 57.338 40.909 6.37 0.00 0.00 2.77
185 186 3.431912 TGTTCGGTCGATGAATCTTTGTG 59.568 43.478 6.37 0.00 0.00 3.33
259 273 9.586435 AGCATTTTACTTAGGTATCAATTTTGC 57.414 29.630 0.00 0.00 0.00 3.68
260 274 9.364989 GCATTTTACTTAGGTATCAATTTTGCA 57.635 29.630 0.00 0.00 0.00 4.08
271 285 9.369904 AGGTATCAATTTTGCATACAATTTGTC 57.630 29.630 5.07 0.00 35.21 3.18
272 286 9.369904 GGTATCAATTTTGCATACAATTTGTCT 57.630 29.630 5.07 0.00 35.21 3.41
301 315 5.438761 CATCTAGATGTACGGATGTCACA 57.561 43.478 22.42 0.00 34.23 3.58
302 316 6.018589 CATCTAGATGTACGGATGTCACAT 57.981 41.667 22.42 0.00 35.65 3.21
303 317 6.450545 CATCTAGATGTACGGATGTCACATT 58.549 40.000 22.42 0.00 33.16 2.71
304 318 6.465439 TCTAGATGTACGGATGTCACATTT 57.535 37.500 0.00 0.00 33.16 2.32
305 319 7.576861 TCTAGATGTACGGATGTCACATTTA 57.423 36.000 0.00 0.00 33.16 1.40
306 320 8.002984 TCTAGATGTACGGATGTCACATTTAA 57.997 34.615 0.00 0.00 33.16 1.52
307 321 8.471609 TCTAGATGTACGGATGTCACATTTAAA 58.528 33.333 0.00 0.00 33.16 1.52
308 322 7.303634 AGATGTACGGATGTCACATTTAAAC 57.696 36.000 0.00 0.00 33.16 2.01
309 323 7.103641 AGATGTACGGATGTCACATTTAAACT 58.896 34.615 0.00 0.00 33.16 2.66
310 324 6.715344 TGTACGGATGTCACATTTAAACTC 57.285 37.500 0.00 0.00 0.00 3.01
311 325 6.460781 TGTACGGATGTCACATTTAAACTCT 58.539 36.000 0.00 0.00 0.00 3.24
312 326 6.588756 TGTACGGATGTCACATTTAAACTCTC 59.411 38.462 0.00 0.00 0.00 3.20
313 327 4.625742 ACGGATGTCACATTTAAACTCTCG 59.374 41.667 0.00 0.00 0.00 4.04
314 328 4.492570 CGGATGTCACATTTAAACTCTCGC 60.493 45.833 0.00 0.00 0.00 5.03
315 329 4.391830 GGATGTCACATTTAAACTCTCGCA 59.608 41.667 0.00 0.00 0.00 5.10
316 330 5.106712 GGATGTCACATTTAAACTCTCGCAA 60.107 40.000 0.00 0.00 0.00 4.85
317 331 5.940192 TGTCACATTTAAACTCTCGCAAT 57.060 34.783 0.00 0.00 0.00 3.56
318 332 7.201609 GGATGTCACATTTAAACTCTCGCAATA 60.202 37.037 0.00 0.00 0.00 1.90
319 333 7.428282 TGTCACATTTAAACTCTCGCAATAA 57.572 32.000 0.00 0.00 0.00 1.40
320 334 7.518161 TGTCACATTTAAACTCTCGCAATAAG 58.482 34.615 0.00 0.00 0.00 1.73
321 335 6.961554 GTCACATTTAAACTCTCGCAATAAGG 59.038 38.462 0.00 0.00 0.00 2.69
322 336 5.739161 CACATTTAAACTCTCGCAATAAGGC 59.261 40.000 0.00 0.00 0.00 4.35
323 337 5.414454 ACATTTAAACTCTCGCAATAAGGCA 59.586 36.000 0.00 0.00 0.00 4.75
324 338 5.545658 TTTAAACTCTCGCAATAAGGCAG 57.454 39.130 0.00 0.00 0.00 4.85
325 339 2.770164 AACTCTCGCAATAAGGCAGT 57.230 45.000 0.00 0.00 0.00 4.40
326 340 3.887621 AACTCTCGCAATAAGGCAGTA 57.112 42.857 0.00 0.00 0.00 2.74
327 341 3.887621 ACTCTCGCAATAAGGCAGTAA 57.112 42.857 0.00 0.00 0.00 2.24
328 342 3.522553 ACTCTCGCAATAAGGCAGTAAC 58.477 45.455 0.00 0.00 0.00 2.50
329 343 3.056107 ACTCTCGCAATAAGGCAGTAACA 60.056 43.478 0.00 0.00 0.00 2.41
330 344 3.932710 CTCTCGCAATAAGGCAGTAACAA 59.067 43.478 0.00 0.00 0.00 2.83
331 345 3.932710 TCTCGCAATAAGGCAGTAACAAG 59.067 43.478 0.00 0.00 0.00 3.16
332 346 3.932710 CTCGCAATAAGGCAGTAACAAGA 59.067 43.478 0.00 0.00 0.00 3.02
333 347 4.320023 TCGCAATAAGGCAGTAACAAGAA 58.680 39.130 0.00 0.00 0.00 2.52
334 348 4.757657 TCGCAATAAGGCAGTAACAAGAAA 59.242 37.500 0.00 0.00 0.00 2.52
335 349 4.851558 CGCAATAAGGCAGTAACAAGAAAC 59.148 41.667 0.00 0.00 0.00 2.78
336 350 5.561919 CGCAATAAGGCAGTAACAAGAAACA 60.562 40.000 0.00 0.00 0.00 2.83
337 351 6.212955 GCAATAAGGCAGTAACAAGAAACAA 58.787 36.000 0.00 0.00 0.00 2.83
338 352 6.699642 GCAATAAGGCAGTAACAAGAAACAAA 59.300 34.615 0.00 0.00 0.00 2.83
339 353 7.223777 GCAATAAGGCAGTAACAAGAAACAAAA 59.776 33.333 0.00 0.00 0.00 2.44
340 354 9.092876 CAATAAGGCAGTAACAAGAAACAAAAA 57.907 29.630 0.00 0.00 0.00 1.94
386 400 8.924511 AAACCATAAACATAGTGGATATCAGG 57.075 34.615 4.83 0.00 36.82 3.86
387 401 7.633018 ACCATAAACATAGTGGATATCAGGT 57.367 36.000 4.83 0.00 36.82 4.00
388 402 8.045720 ACCATAAACATAGTGGATATCAGGTT 57.954 34.615 4.83 0.00 36.82 3.50
389 403 9.166222 ACCATAAACATAGTGGATATCAGGTTA 57.834 33.333 4.83 0.00 36.82 2.85
390 404 9.658799 CCATAAACATAGTGGATATCAGGTTAG 57.341 37.037 4.83 0.00 34.94 2.34
394 408 8.497910 AACATAGTGGATATCAGGTTAGATGT 57.502 34.615 4.83 2.22 0.00 3.06
395 409 7.901029 ACATAGTGGATATCAGGTTAGATGTG 58.099 38.462 4.83 0.00 0.00 3.21
396 410 7.510685 ACATAGTGGATATCAGGTTAGATGTGT 59.489 37.037 4.83 0.00 0.00 3.72
397 411 6.166984 AGTGGATATCAGGTTAGATGTGTG 57.833 41.667 4.83 0.00 0.00 3.82
398 412 5.899547 AGTGGATATCAGGTTAGATGTGTGA 59.100 40.000 4.83 0.00 0.00 3.58
399 413 6.556495 AGTGGATATCAGGTTAGATGTGTGAT 59.444 38.462 4.83 0.00 0.00 3.06
400 414 7.730332 AGTGGATATCAGGTTAGATGTGTGATA 59.270 37.037 4.83 0.00 35.23 2.15
401 415 8.535335 GTGGATATCAGGTTAGATGTGTGATAT 58.465 37.037 4.83 3.40 41.42 1.63
402 416 9.768215 TGGATATCAGGTTAGATGTGTGATATA 57.232 33.333 4.83 0.00 39.71 0.86
424 438 9.775539 ATATAGTTATGTCACATCTAGATGGGT 57.224 33.333 29.67 16.42 42.66 4.51
425 439 6.166984 AGTTATGTCACATCTAGATGGGTG 57.833 41.667 29.67 21.67 42.66 4.61
426 440 2.988010 TGTCACATCTAGATGGGTGC 57.012 50.000 29.67 23.51 42.66 5.01
427 441 2.187100 TGTCACATCTAGATGGGTGCA 58.813 47.619 29.67 25.35 42.66 4.57
428 442 2.571202 TGTCACATCTAGATGGGTGCAA 59.429 45.455 29.67 11.85 42.66 4.08
429 443 3.201290 GTCACATCTAGATGGGTGCAAG 58.799 50.000 29.67 13.63 42.66 4.01
430 444 3.106827 TCACATCTAGATGGGTGCAAGA 58.893 45.455 29.67 10.80 42.66 3.02
431 445 3.118629 TCACATCTAGATGGGTGCAAGAC 60.119 47.826 29.67 0.00 42.66 3.01
432 446 2.840038 ACATCTAGATGGGTGCAAGACA 59.160 45.455 31.19 0.00 42.91 3.41
433 447 3.118482 ACATCTAGATGGGTGCAAGACAG 60.118 47.826 31.19 6.94 42.91 3.51
434 448 2.820178 TCTAGATGGGTGCAAGACAGA 58.180 47.619 0.00 0.00 0.00 3.41
435 449 2.497675 TCTAGATGGGTGCAAGACAGAC 59.502 50.000 0.00 0.00 0.00 3.51
436 450 0.326264 AGATGGGTGCAAGACAGACC 59.674 55.000 0.00 0.00 0.00 3.85
437 451 0.326264 GATGGGTGCAAGACAGACCT 59.674 55.000 0.00 0.00 0.00 3.85
438 452 0.773644 ATGGGTGCAAGACAGACCTT 59.226 50.000 0.00 0.00 0.00 3.50
475 489 1.380302 GGTGGATGGTGCCTCAACT 59.620 57.895 0.00 0.00 0.00 3.16
525 539 0.689055 TCTGAGTGGCATTGCTCACT 59.311 50.000 23.88 23.88 40.65 3.41
593 617 2.815647 GCCGCAGCACTCCAGTAC 60.816 66.667 0.00 0.00 39.53 2.73
601 625 0.390472 GCACTCCAGTACTGAGCACC 60.390 60.000 24.68 5.82 0.00 5.01
633 657 2.109799 CCTCCTACGCTGCCATGG 59.890 66.667 7.63 7.63 0.00 3.66
854 878 2.025416 CCACCATCCACATTTACTCCCA 60.025 50.000 0.00 0.00 0.00 4.37
855 879 3.016736 CACCATCCACATTTACTCCCAC 58.983 50.000 0.00 0.00 0.00 4.61
950 989 1.224592 CCATTCCTCCACTTCCCCG 59.775 63.158 0.00 0.00 0.00 5.73
1330 1369 4.115199 CCAAGGCCCCCTTCTCCG 62.115 72.222 0.00 0.00 42.67 4.63
1612 1651 2.244117 CTACATGGGTGCACCTCGCT 62.244 60.000 33.91 17.12 43.06 4.93
1613 1652 2.520465 TACATGGGTGCACCTCGCTG 62.520 60.000 33.91 25.17 43.06 5.18
1614 1653 3.321648 ATGGGTGCACCTCGCTGA 61.322 61.111 33.91 12.45 43.06 4.26
1615 1654 3.612247 ATGGGTGCACCTCGCTGAC 62.612 63.158 33.91 16.73 43.06 3.51
1822 1868 7.496346 TGTAGAAGTAGATGATGGGTTTCTT 57.504 36.000 0.00 0.00 0.00 2.52
1886 2091 2.558359 AGTGTTGCTGGTTTGCCTTATC 59.442 45.455 0.00 0.00 35.27 1.75
1893 2098 3.119495 GCTGGTTTGCCTTATCGTGAAAT 60.119 43.478 0.00 0.00 35.27 2.17
1894 2099 4.414852 CTGGTTTGCCTTATCGTGAAATG 58.585 43.478 0.00 0.00 35.27 2.32
1912 2117 9.650371 CGTGAAATGTGTTATGATTAGTATTGG 57.350 33.333 0.00 0.00 0.00 3.16
1977 2458 2.679336 TGATCATGATGTGGTCGCTTTG 59.321 45.455 14.30 0.00 41.06 2.77
1990 2471 5.350365 GTGGTCGCTTTGATTGTATGAACTA 59.650 40.000 0.00 0.00 0.00 2.24
2116 2819 1.406887 GCTTCGTCTTCCATGGCCTTA 60.407 52.381 6.96 0.00 0.00 2.69
2119 2822 0.541863 CGTCTTCCATGGCCTTACCT 59.458 55.000 6.96 0.00 40.22 3.08
2120 2823 1.473434 CGTCTTCCATGGCCTTACCTC 60.473 57.143 6.96 0.00 40.22 3.85
2121 2824 1.134068 GTCTTCCATGGCCTTACCTCC 60.134 57.143 6.96 0.00 40.22 4.30
2135 2841 3.628989 CTCCATGGAGGCGTGGTA 58.371 61.111 31.14 0.00 38.51 3.25
2137 2843 2.032860 CTCCATGGAGGCGTGGTAGG 62.033 65.000 31.14 4.89 38.51 3.18
2138 2844 2.203070 CATGGAGGCGTGGTAGGC 60.203 66.667 0.00 0.00 0.00 3.93
2184 2896 8.227119 CCTGTTTTGTTTTTAGGTGTTCTTTTG 58.773 33.333 0.00 0.00 0.00 2.44
2185 2897 8.664211 TGTTTTGTTTTTAGGTGTTCTTTTGT 57.336 26.923 0.00 0.00 0.00 2.83
2186 2898 8.552034 TGTTTTGTTTTTAGGTGTTCTTTTGTG 58.448 29.630 0.00 0.00 0.00 3.33
2188 2900 8.664211 TTTGTTTTTAGGTGTTCTTTTGTGTT 57.336 26.923 0.00 0.00 0.00 3.32
2189 2901 8.664211 TTGTTTTTAGGTGTTCTTTTGTGTTT 57.336 26.923 0.00 0.00 0.00 2.83
2190 2902 8.077836 TGTTTTTAGGTGTTCTTTTGTGTTTG 57.922 30.769 0.00 0.00 0.00 2.93
2193 2905 8.664211 TTTTAGGTGTTCTTTTGTGTTTGTTT 57.336 26.923 0.00 0.00 0.00 2.83
2194 2906 9.760077 TTTTAGGTGTTCTTTTGTGTTTGTTTA 57.240 25.926 0.00 0.00 0.00 2.01
2195 2907 8.973835 TTAGGTGTTCTTTTGTGTTTGTTTAG 57.026 30.769 0.00 0.00 0.00 1.85
2196 2908 7.222000 AGGTGTTCTTTTGTGTTTGTTTAGA 57.778 32.000 0.00 0.00 0.00 2.10
2197 2909 7.312899 AGGTGTTCTTTTGTGTTTGTTTAGAG 58.687 34.615 0.00 0.00 0.00 2.43
2198 2910 6.034577 GGTGTTCTTTTGTGTTTGTTTAGAGC 59.965 38.462 0.00 0.00 0.00 4.09
2199 2911 6.584563 GTGTTCTTTTGTGTTTGTTTAGAGCA 59.415 34.615 0.00 0.00 0.00 4.26
2200 2912 7.275560 GTGTTCTTTTGTGTTTGTTTAGAGCAT 59.724 33.333 0.00 0.00 0.00 3.79
2201 2913 7.487829 TGTTCTTTTGTGTTTGTTTAGAGCATC 59.512 33.333 0.00 0.00 0.00 3.91
2217 2929 5.673337 GAGCATCTACACACAGTCAAAAA 57.327 39.130 0.00 0.00 0.00 1.94
2233 2945 1.318576 AAAAAGAGCGACCCAACTGG 58.681 50.000 0.00 0.00 41.37 4.00
2243 2955 3.914713 CCAACTGGGCCCCCACTT 61.915 66.667 22.27 1.38 41.89 3.16
2244 2956 2.283173 CAACTGGGCCCCCACTTC 60.283 66.667 22.27 0.00 41.89 3.01
2245 2957 2.780924 AACTGGGCCCCCACTTCA 60.781 61.111 22.27 0.00 41.89 3.02
2246 2958 2.169810 AACTGGGCCCCCACTTCAT 61.170 57.895 22.27 0.00 41.89 2.57
2247 2959 2.155197 AACTGGGCCCCCACTTCATC 62.155 60.000 22.27 0.00 41.89 2.92
2248 2960 3.346734 TGGGCCCCCACTTCATCC 61.347 66.667 22.27 0.00 41.89 3.51
2249 2961 4.143301 GGGCCCCCACTTCATCCC 62.143 72.222 12.23 0.00 35.81 3.85
2250 2962 3.023735 GGCCCCCACTTCATCCCT 61.024 66.667 0.00 0.00 0.00 4.20
2251 2963 1.696314 GGCCCCCACTTCATCCCTA 60.696 63.158 0.00 0.00 0.00 3.53
2252 2964 1.286305 GGCCCCCACTTCATCCCTAA 61.286 60.000 0.00 0.00 0.00 2.69
2253 2965 0.629058 GCCCCCACTTCATCCCTAAA 59.371 55.000 0.00 0.00 0.00 1.85
2254 2966 1.685180 GCCCCCACTTCATCCCTAAAC 60.685 57.143 0.00 0.00 0.00 2.01
2255 2967 1.408266 CCCCCACTTCATCCCTAAACG 60.408 57.143 0.00 0.00 0.00 3.60
2256 2968 1.280998 CCCCACTTCATCCCTAAACGT 59.719 52.381 0.00 0.00 0.00 3.99
2257 2969 2.629051 CCCACTTCATCCCTAAACGTC 58.371 52.381 0.00 0.00 0.00 4.34
2258 2970 2.629051 CCACTTCATCCCTAAACGTCC 58.371 52.381 0.00 0.00 0.00 4.79
2259 2971 2.268298 CACTTCATCCCTAAACGTCCG 58.732 52.381 0.00 0.00 0.00 4.79
2260 2972 1.206371 ACTTCATCCCTAAACGTCCGG 59.794 52.381 0.00 0.00 0.00 5.14
2261 2973 1.479323 CTTCATCCCTAAACGTCCGGA 59.521 52.381 0.00 0.00 0.00 5.14
2262 2974 1.784358 TCATCCCTAAACGTCCGGAT 58.216 50.000 7.81 0.00 35.44 4.18
2263 2975 1.684983 TCATCCCTAAACGTCCGGATC 59.315 52.381 7.81 0.00 32.67 3.36
2264 2976 0.672342 ATCCCTAAACGTCCGGATCG 59.328 55.000 20.16 20.16 28.64 3.69
2265 2977 0.394216 TCCCTAAACGTCCGGATCGA 60.394 55.000 26.02 8.99 0.00 3.59
2266 2978 0.248784 CCCTAAACGTCCGGATCGAC 60.249 60.000 26.02 7.14 0.00 4.20
2275 2987 2.410469 CGGATCGACGGGTGTACC 59.590 66.667 0.00 0.00 0.00 3.34
2276 2988 2.117156 CGGATCGACGGGTGTACCT 61.117 63.158 0.44 0.00 36.97 3.08
2277 2989 1.732308 GGATCGACGGGTGTACCTC 59.268 63.158 0.44 0.00 36.97 3.85
2278 2990 1.033746 GGATCGACGGGTGTACCTCA 61.034 60.000 0.44 0.00 36.97 3.86
2279 2991 0.813184 GATCGACGGGTGTACCTCAA 59.187 55.000 0.44 0.00 36.97 3.02
2280 2992 1.203052 GATCGACGGGTGTACCTCAAA 59.797 52.381 0.44 0.00 36.97 2.69
2281 2993 0.314935 TCGACGGGTGTACCTCAAAC 59.685 55.000 0.44 0.00 36.97 2.93
2282 2994 0.668401 CGACGGGTGTACCTCAAACC 60.668 60.000 0.44 0.00 36.97 3.27
2288 3000 2.987232 GGTGTACCTCAAACCCATCTC 58.013 52.381 0.00 0.00 0.00 2.75
2289 3001 2.304761 GGTGTACCTCAAACCCATCTCA 59.695 50.000 0.00 0.00 0.00 3.27
2290 3002 3.244770 GGTGTACCTCAAACCCATCTCAA 60.245 47.826 0.00 0.00 0.00 3.02
2291 3003 4.394729 GTGTACCTCAAACCCATCTCAAA 58.605 43.478 0.00 0.00 0.00 2.69
2292 3004 5.010282 GTGTACCTCAAACCCATCTCAAAT 58.990 41.667 0.00 0.00 0.00 2.32
2293 3005 5.123979 GTGTACCTCAAACCCATCTCAAATC 59.876 44.000 0.00 0.00 0.00 2.17
2294 3006 4.664688 ACCTCAAACCCATCTCAAATCT 57.335 40.909 0.00 0.00 0.00 2.40
2295 3007 5.779241 ACCTCAAACCCATCTCAAATCTA 57.221 39.130 0.00 0.00 0.00 1.98
2296 3008 5.749462 ACCTCAAACCCATCTCAAATCTAG 58.251 41.667 0.00 0.00 0.00 2.43
2297 3009 5.488919 ACCTCAAACCCATCTCAAATCTAGA 59.511 40.000 0.00 0.00 0.00 2.43
2298 3010 6.054295 CCTCAAACCCATCTCAAATCTAGAG 58.946 44.000 0.00 0.00 34.42 2.43
2299 3011 6.126940 CCTCAAACCCATCTCAAATCTAGAGA 60.127 42.308 0.00 0.00 45.38 3.10
2300 3012 6.644347 TCAAACCCATCTCAAATCTAGAGAC 58.356 40.000 0.00 0.00 44.23 3.36
2301 3013 6.213397 TCAAACCCATCTCAAATCTAGAGACA 59.787 38.462 0.00 0.00 44.23 3.41
2302 3014 6.627087 AACCCATCTCAAATCTAGAGACAA 57.373 37.500 0.00 0.00 44.23 3.18
2303 3015 6.821616 ACCCATCTCAAATCTAGAGACAAT 57.178 37.500 0.00 0.00 44.23 2.71
2304 3016 7.921041 ACCCATCTCAAATCTAGAGACAATA 57.079 36.000 0.00 0.00 44.23 1.90
2305 3017 8.503428 ACCCATCTCAAATCTAGAGACAATAT 57.497 34.615 0.00 0.00 44.23 1.28
2306 3018 8.373981 ACCCATCTCAAATCTAGAGACAATATG 58.626 37.037 0.00 0.00 44.23 1.78
2307 3019 8.591940 CCCATCTCAAATCTAGAGACAATATGA 58.408 37.037 0.00 0.00 44.23 2.15
2308 3020 9.642327 CCATCTCAAATCTAGAGACAATATGAG 57.358 37.037 0.00 4.59 44.23 2.90
2309 3021 9.642327 CATCTCAAATCTAGAGACAATATGAGG 57.358 37.037 0.00 0.00 44.23 3.86
2310 3022 8.187913 TCTCAAATCTAGAGACAATATGAGGG 57.812 38.462 0.00 0.00 37.22 4.30
2311 3023 6.763355 TCAAATCTAGAGACAATATGAGGGC 58.237 40.000 0.00 0.00 0.00 5.19
2312 3024 5.398603 AATCTAGAGACAATATGAGGGCG 57.601 43.478 0.00 0.00 0.00 6.13
2313 3025 4.100279 TCTAGAGACAATATGAGGGCGA 57.900 45.455 0.00 0.00 0.00 5.54
2314 3026 3.821600 TCTAGAGACAATATGAGGGCGAC 59.178 47.826 0.00 0.00 0.00 5.19
2333 3045 4.736896 GGTCACACCCGGACGCTC 62.737 72.222 0.73 0.00 36.12 5.03
2334 3046 4.736896 GTCACACCCGGACGCTCC 62.737 72.222 0.73 0.00 0.00 4.70
2343 3055 4.500116 GGACGCTCCCGCTCTGAC 62.500 72.222 0.00 0.00 38.22 3.51
2344 3056 4.838486 GACGCTCCCGCTCTGACG 62.838 72.222 0.00 0.00 38.22 4.35
2347 3059 4.803426 GCTCCCGCTCTGACGTGG 62.803 72.222 0.00 0.00 0.00 4.94
2348 3060 4.803426 CTCCCGCTCTGACGTGGC 62.803 72.222 0.00 0.00 33.20 5.01
2351 3063 4.111016 CCGCTCTGACGTGGCGTA 62.111 66.667 16.38 0.00 46.23 4.42
2352 3064 2.874780 CGCTCTGACGTGGCGTAC 60.875 66.667 0.00 0.00 41.37 3.67
2353 3065 2.257371 GCTCTGACGTGGCGTACA 59.743 61.111 0.00 0.00 41.37 2.90
2354 3066 1.372499 GCTCTGACGTGGCGTACAA 60.372 57.895 0.00 0.00 41.37 2.41
2355 3067 1.344942 GCTCTGACGTGGCGTACAAG 61.345 60.000 0.00 0.00 41.37 3.16
2356 3068 0.240145 CTCTGACGTGGCGTACAAGA 59.760 55.000 0.00 0.00 41.37 3.02
2357 3069 0.240145 TCTGACGTGGCGTACAAGAG 59.760 55.000 0.00 0.00 41.37 2.85
2358 3070 1.344942 CTGACGTGGCGTACAAGAGC 61.345 60.000 0.00 0.00 41.37 4.09
2359 3071 1.372499 GACGTGGCGTACAAGAGCA 60.372 57.895 0.00 0.00 41.37 4.26
2360 3072 0.942410 GACGTGGCGTACAAGAGCAA 60.942 55.000 0.00 0.00 41.37 3.91
2361 3073 0.531090 ACGTGGCGTACAAGAGCAAA 60.531 50.000 0.00 0.00 38.73 3.68
2362 3074 0.110823 CGTGGCGTACAAGAGCAAAC 60.111 55.000 0.00 0.00 34.54 2.93
2363 3075 0.237498 GTGGCGTACAAGAGCAAACC 59.763 55.000 0.00 0.00 34.54 3.27
2364 3076 0.887387 TGGCGTACAAGAGCAAACCC 60.887 55.000 0.00 0.00 34.54 4.11
2365 3077 1.583495 GGCGTACAAGAGCAAACCCC 61.583 60.000 0.00 0.00 34.54 4.95
2366 3078 0.887387 GCGTACAAGAGCAAACCCCA 60.887 55.000 0.00 0.00 0.00 4.96
2367 3079 0.872388 CGTACAAGAGCAAACCCCAC 59.128 55.000 0.00 0.00 0.00 4.61
2368 3080 1.244816 GTACAAGAGCAAACCCCACC 58.755 55.000 0.00 0.00 0.00 4.61
2369 3081 1.145571 TACAAGAGCAAACCCCACCT 58.854 50.000 0.00 0.00 0.00 4.00
2370 3082 0.468029 ACAAGAGCAAACCCCACCTG 60.468 55.000 0.00 0.00 0.00 4.00
2371 3083 1.531602 AAGAGCAAACCCCACCTGC 60.532 57.895 0.00 0.00 36.29 4.85
2372 3084 2.203480 GAGCAAACCCCACCTGCA 60.203 61.111 0.00 0.00 38.58 4.41
2373 3085 2.203538 AGCAAACCCCACCTGCAG 60.204 61.111 6.78 6.78 38.58 4.41
2374 3086 3.994853 GCAAACCCCACCTGCAGC 61.995 66.667 8.66 0.00 36.09 5.25
2375 3087 2.203538 CAAACCCCACCTGCAGCT 60.204 61.111 8.66 0.00 0.00 4.24
2376 3088 1.833934 CAAACCCCACCTGCAGCTT 60.834 57.895 8.66 0.00 0.00 3.74
2377 3089 1.531602 AAACCCCACCTGCAGCTTC 60.532 57.895 8.66 0.00 0.00 3.86
2378 3090 2.296945 AAACCCCACCTGCAGCTTCA 62.297 55.000 8.66 0.00 0.00 3.02
2379 3091 2.674380 CCCCACCTGCAGCTTCAC 60.674 66.667 8.66 0.00 0.00 3.18
2380 3092 2.113774 CCCACCTGCAGCTTCACA 59.886 61.111 8.66 0.00 0.00 3.58
2381 3093 1.303888 CCCACCTGCAGCTTCACAT 60.304 57.895 8.66 0.00 0.00 3.21
2382 3094 0.896940 CCCACCTGCAGCTTCACATT 60.897 55.000 8.66 0.00 0.00 2.71
2383 3095 0.524862 CCACCTGCAGCTTCACATTC 59.475 55.000 8.66 0.00 0.00 2.67
2384 3096 1.241165 CACCTGCAGCTTCACATTCA 58.759 50.000 8.66 0.00 0.00 2.57
2385 3097 1.816835 CACCTGCAGCTTCACATTCAT 59.183 47.619 8.66 0.00 0.00 2.57
2386 3098 1.816835 ACCTGCAGCTTCACATTCATG 59.183 47.619 8.66 0.00 0.00 3.07
2387 3099 1.816835 CCTGCAGCTTCACATTCATGT 59.183 47.619 8.66 0.00 42.84 3.21
2388 3100 2.230508 CCTGCAGCTTCACATTCATGTT 59.769 45.455 8.66 0.00 39.39 2.71
2389 3101 3.305813 CCTGCAGCTTCACATTCATGTTT 60.306 43.478 8.66 0.00 39.39 2.83
2390 3102 3.904571 TGCAGCTTCACATTCATGTTTC 58.095 40.909 0.00 0.00 39.39 2.78
2391 3103 3.570975 TGCAGCTTCACATTCATGTTTCT 59.429 39.130 0.00 0.00 39.39 2.52
2392 3104 3.918591 GCAGCTTCACATTCATGTTTCTG 59.081 43.478 0.00 0.00 39.39 3.02
2393 3105 4.558095 GCAGCTTCACATTCATGTTTCTGT 60.558 41.667 0.00 0.00 39.39 3.41
2394 3106 4.915667 CAGCTTCACATTCATGTTTCTGTG 59.084 41.667 11.04 11.04 39.39 3.66
2395 3107 3.671928 GCTTCACATTCATGTTTCTGTGC 59.328 43.478 11.93 0.00 39.39 4.57
2396 3108 4.558095 GCTTCACATTCATGTTTCTGTGCT 60.558 41.667 11.93 0.00 39.39 4.40
2397 3109 4.492791 TCACATTCATGTTTCTGTGCTG 57.507 40.909 11.93 0.00 39.39 4.41
2398 3110 3.884693 TCACATTCATGTTTCTGTGCTGT 59.115 39.130 11.93 0.00 39.39 4.40
2399 3111 3.978855 CACATTCATGTTTCTGTGCTGTG 59.021 43.478 0.00 0.00 39.39 3.66
2400 3112 2.780065 TTCATGTTTCTGTGCTGTGC 57.220 45.000 0.00 0.00 0.00 4.57
2401 3113 1.677942 TCATGTTTCTGTGCTGTGCA 58.322 45.000 0.00 0.00 35.60 4.57
2402 3114 2.232399 TCATGTTTCTGTGCTGTGCAT 58.768 42.857 0.00 0.00 41.91 3.96
2403 3115 2.030628 TCATGTTTCTGTGCTGTGCATG 60.031 45.455 0.00 0.00 41.91 4.06
2404 3116 0.031043 TGTTTCTGTGCTGTGCATGC 59.969 50.000 11.82 11.82 41.91 4.06
2405 3117 0.665369 GTTTCTGTGCTGTGCATGCC 60.665 55.000 16.68 7.25 41.91 4.40
2406 3118 1.808531 TTTCTGTGCTGTGCATGCCC 61.809 55.000 16.68 3.59 41.91 5.36
2407 3119 2.675423 CTGTGCTGTGCATGCCCT 60.675 61.111 16.68 0.00 41.91 5.19
2408 3120 2.674033 TGTGCTGTGCATGCCCTC 60.674 61.111 16.68 6.46 41.91 4.30
2409 3121 2.360852 GTGCTGTGCATGCCCTCT 60.361 61.111 16.68 0.00 41.91 3.69
2410 3122 2.045634 TGCTGTGCATGCCCTCTC 60.046 61.111 16.68 1.12 31.71 3.20
2411 3123 2.827642 GCTGTGCATGCCCTCTCC 60.828 66.667 16.68 0.00 0.00 3.71
2412 3124 2.513204 CTGTGCATGCCCTCTCCG 60.513 66.667 16.68 0.00 0.00 4.63
2413 3125 3.320879 CTGTGCATGCCCTCTCCGT 62.321 63.158 16.68 0.00 0.00 4.69
2414 3126 2.821366 GTGCATGCCCTCTCCGTG 60.821 66.667 16.68 0.00 0.00 4.94
2415 3127 3.002583 TGCATGCCCTCTCCGTGA 61.003 61.111 16.68 0.00 0.00 4.35
2416 3128 2.268920 GCATGCCCTCTCCGTGAA 59.731 61.111 6.36 0.00 0.00 3.18
2417 3129 2.109126 GCATGCCCTCTCCGTGAAC 61.109 63.158 6.36 0.00 0.00 3.18
2418 3130 1.450312 CATGCCCTCTCCGTGAACC 60.450 63.158 0.00 0.00 0.00 3.62
2419 3131 2.670148 ATGCCCTCTCCGTGAACCC 61.670 63.158 0.00 0.00 0.00 4.11
2420 3132 4.452733 GCCCTCTCCGTGAACCCG 62.453 72.222 0.00 0.00 0.00 5.28
2421 3133 2.678934 CCCTCTCCGTGAACCCGA 60.679 66.667 0.00 0.00 0.00 5.14
2422 3134 2.711922 CCCTCTCCGTGAACCCGAG 61.712 68.421 0.00 0.00 0.00 4.63
2423 3135 2.182030 CTCTCCGTGAACCCGAGC 59.818 66.667 0.00 0.00 0.00 5.03
2424 3136 2.282958 TCTCCGTGAACCCGAGCT 60.283 61.111 0.00 0.00 0.00 4.09
2425 3137 1.001764 TCTCCGTGAACCCGAGCTA 60.002 57.895 0.00 0.00 0.00 3.32
2426 3138 1.030488 TCTCCGTGAACCCGAGCTAG 61.030 60.000 0.00 0.00 0.00 3.42
2427 3139 2.202756 CCGTGAACCCGAGCTAGC 60.203 66.667 6.62 6.62 0.00 3.42
2428 3140 2.202756 CGTGAACCCGAGCTAGCC 60.203 66.667 12.13 1.79 0.00 3.93
2429 3141 2.202756 GTGAACCCGAGCTAGCCG 60.203 66.667 12.13 14.45 0.00 5.52
2430 3142 4.143333 TGAACCCGAGCTAGCCGC 62.143 66.667 12.13 2.78 39.57 6.53
2479 3191 2.413765 GGAAGCCGTCCGAGCTAG 59.586 66.667 0.00 0.00 40.49 3.42
2480 3192 2.413765 GAAGCCGTCCGAGCTAGG 59.586 66.667 6.52 6.52 40.49 3.02
2489 3201 3.955101 CGAGCTAGGCGCGCTAGT 61.955 66.667 32.29 18.19 45.12 2.57
2490 3202 2.354072 GAGCTAGGCGCGCTAGTG 60.354 66.667 32.29 18.82 45.59 2.74
2491 3203 2.829003 AGCTAGGCGCGCTAGTGA 60.829 61.111 32.29 10.72 45.59 3.41
2492 3204 2.655685 GCTAGGCGCGCTAGTGAC 60.656 66.667 32.29 13.29 35.73 3.67
2493 3205 2.352457 CTAGGCGCGCTAGTGACG 60.352 66.667 32.29 11.26 41.78 4.35
2494 3206 3.808771 CTAGGCGCGCTAGTGACGG 62.809 68.421 32.29 8.79 41.78 4.79
2498 3210 4.476410 CGCGCTAGTGACGGAGCA 62.476 66.667 7.68 0.00 38.69 4.26
2499 3211 2.881352 GCGCTAGTGACGGAGCAC 60.881 66.667 7.68 0.00 38.69 4.40
2500 3212 2.566529 CGCTAGTGACGGAGCACA 59.433 61.111 11.98 0.00 41.19 4.57
2501 3213 1.139734 CGCTAGTGACGGAGCACAT 59.860 57.895 11.98 0.00 41.19 3.21
2502 3214 0.867753 CGCTAGTGACGGAGCACATC 60.868 60.000 11.98 0.00 41.19 3.06
2503 3215 0.528684 GCTAGTGACGGAGCACATCC 60.529 60.000 7.52 0.00 45.64 3.51
2550 3262 4.615834 GCCGCGCTAGAGACCGAG 62.616 72.222 5.56 0.00 0.00 4.63
2551 3263 4.615834 CCGCGCTAGAGACCGAGC 62.616 72.222 5.56 0.00 37.62 5.03
2552 3264 3.578272 CGCGCTAGAGACCGAGCT 61.578 66.667 5.56 0.00 38.64 4.09
2553 3265 2.330041 GCGCTAGAGACCGAGCTC 59.670 66.667 2.73 2.73 38.64 4.09
2554 3266 3.027292 CGCTAGAGACCGAGCTCC 58.973 66.667 8.47 0.00 38.64 4.70
2555 3267 2.548295 CGCTAGAGACCGAGCTCCC 61.548 68.421 8.47 0.00 38.64 4.30
2556 3268 1.454111 GCTAGAGACCGAGCTCCCA 60.454 63.158 8.47 0.00 37.92 4.37
2557 3269 1.730451 GCTAGAGACCGAGCTCCCAC 61.730 65.000 8.47 0.00 37.92 4.61
2558 3270 0.394488 CTAGAGACCGAGCTCCCACA 60.394 60.000 8.47 0.00 35.49 4.17
2559 3271 0.394488 TAGAGACCGAGCTCCCACAG 60.394 60.000 8.47 0.00 35.49 3.66
2567 3279 4.767255 GCTCCCACAGCTCACCCG 62.767 72.222 0.00 0.00 45.83 5.28
2568 3280 4.767255 CTCCCACAGCTCACCCGC 62.767 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.680110 CGATGACAACTGAAAAGTCTACGT 59.320 41.667 0.00 0.00 33.56 3.57
14 15 4.915667 TCGATGACAACTGAAAAGTCTACG 59.084 41.667 0.00 0.00 35.12 3.51
16 17 5.838529 TGTCGATGACAACTGAAAAGTCTA 58.161 37.500 0.00 0.00 39.78 2.59
20 21 5.657470 TCTTGTCGATGACAACTGAAAAG 57.343 39.130 8.21 0.00 45.88 2.27
37 38 1.482593 CCGGAGTCAGCCTAATCTTGT 59.517 52.381 0.00 0.00 0.00 3.16
49 50 2.276116 GGCTCTCACACCGGAGTCA 61.276 63.158 9.46 0.00 34.68 3.41
51 52 3.374402 CGGCTCTCACACCGGAGT 61.374 66.667 9.46 2.22 45.74 3.85
86 87 3.357079 AGCCGCCAAAACGAGCTG 61.357 61.111 0.00 0.00 37.89 4.24
87 88 3.357079 CAGCCGCCAAAACGAGCT 61.357 61.111 0.00 0.00 39.20 4.09
140 141 9.660180 AACAAAGCACCTCAAAAGTAATAAAAA 57.340 25.926 0.00 0.00 0.00 1.94
150 151 2.096248 ACCGAACAAAGCACCTCAAAA 58.904 42.857 0.00 0.00 0.00 2.44
152 153 1.305201 GACCGAACAAAGCACCTCAA 58.695 50.000 0.00 0.00 0.00 3.02
167 168 5.524511 TTTACACAAAGATTCATCGACCG 57.475 39.130 0.00 0.00 0.00 4.79
169 170 7.963981 TCAGATTTACACAAAGATTCATCGAC 58.036 34.615 0.00 0.00 0.00 4.20
171 172 8.606602 TGATCAGATTTACACAAAGATTCATCG 58.393 33.333 0.00 0.00 0.00 3.84
279 293 5.438761 TGTGACATCCGTACATCTAGATG 57.561 43.478 27.63 27.63 44.15 2.90
280 294 6.656632 AATGTGACATCCGTACATCTAGAT 57.343 37.500 0.00 0.00 34.18 1.98
281 295 6.465439 AAATGTGACATCCGTACATCTAGA 57.535 37.500 0.00 0.00 34.18 2.43
282 296 8.540492 GTTTAAATGTGACATCCGTACATCTAG 58.460 37.037 0.00 0.00 34.18 2.43
283 297 8.255206 AGTTTAAATGTGACATCCGTACATCTA 58.745 33.333 0.00 0.00 34.18 1.98
284 298 7.103641 AGTTTAAATGTGACATCCGTACATCT 58.896 34.615 0.00 0.00 34.18 2.90
285 299 7.277981 AGAGTTTAAATGTGACATCCGTACATC 59.722 37.037 0.00 0.00 34.18 3.06
286 300 7.103641 AGAGTTTAAATGTGACATCCGTACAT 58.896 34.615 0.00 0.00 36.66 2.29
287 301 6.460781 AGAGTTTAAATGTGACATCCGTACA 58.539 36.000 0.00 0.00 0.00 2.90
288 302 6.237490 CGAGAGTTTAAATGTGACATCCGTAC 60.237 42.308 0.00 0.00 0.00 3.67
289 303 5.803461 CGAGAGTTTAAATGTGACATCCGTA 59.197 40.000 0.00 0.00 0.00 4.02
290 304 4.625742 CGAGAGTTTAAATGTGACATCCGT 59.374 41.667 0.00 0.00 0.00 4.69
291 305 4.492570 GCGAGAGTTTAAATGTGACATCCG 60.493 45.833 0.00 0.00 0.00 4.18
292 306 4.391830 TGCGAGAGTTTAAATGTGACATCC 59.608 41.667 0.00 0.00 0.00 3.51
293 307 5.530519 TGCGAGAGTTTAAATGTGACATC 57.469 39.130 0.00 0.00 0.00 3.06
294 308 5.940192 TTGCGAGAGTTTAAATGTGACAT 57.060 34.783 0.00 0.00 0.00 3.06
295 309 5.940192 ATTGCGAGAGTTTAAATGTGACA 57.060 34.783 0.00 0.00 0.00 3.58
296 310 6.961554 CCTTATTGCGAGAGTTTAAATGTGAC 59.038 38.462 0.00 0.00 0.00 3.67
297 311 6.403200 GCCTTATTGCGAGAGTTTAAATGTGA 60.403 38.462 0.00 0.00 0.00 3.58
298 312 5.739161 GCCTTATTGCGAGAGTTTAAATGTG 59.261 40.000 0.00 0.00 0.00 3.21
299 313 5.414454 TGCCTTATTGCGAGAGTTTAAATGT 59.586 36.000 0.00 0.00 0.00 2.71
300 314 5.879237 TGCCTTATTGCGAGAGTTTAAATG 58.121 37.500 0.00 0.00 0.00 2.32
301 315 5.648092 ACTGCCTTATTGCGAGAGTTTAAAT 59.352 36.000 0.00 0.00 0.00 1.40
302 316 5.001232 ACTGCCTTATTGCGAGAGTTTAAA 58.999 37.500 0.00 0.00 0.00 1.52
303 317 4.575885 ACTGCCTTATTGCGAGAGTTTAA 58.424 39.130 0.00 0.00 0.00 1.52
304 318 4.202245 ACTGCCTTATTGCGAGAGTTTA 57.798 40.909 0.00 0.00 0.00 2.01
305 319 3.059352 ACTGCCTTATTGCGAGAGTTT 57.941 42.857 0.00 0.00 0.00 2.66
306 320 2.770164 ACTGCCTTATTGCGAGAGTT 57.230 45.000 0.00 0.00 0.00 3.01
307 321 3.056107 TGTTACTGCCTTATTGCGAGAGT 60.056 43.478 0.00 0.00 0.00 3.24
308 322 3.521560 TGTTACTGCCTTATTGCGAGAG 58.478 45.455 0.00 0.00 0.00 3.20
309 323 3.603158 TGTTACTGCCTTATTGCGAGA 57.397 42.857 0.00 0.00 0.00 4.04
310 324 3.932710 TCTTGTTACTGCCTTATTGCGAG 59.067 43.478 0.00 0.00 0.00 5.03
311 325 3.932822 TCTTGTTACTGCCTTATTGCGA 58.067 40.909 0.00 0.00 0.00 5.10
312 326 4.678509 TTCTTGTTACTGCCTTATTGCG 57.321 40.909 0.00 0.00 0.00 4.85
313 327 5.768317 TGTTTCTTGTTACTGCCTTATTGC 58.232 37.500 0.00 0.00 0.00 3.56
314 328 8.641499 TTTTGTTTCTTGTTACTGCCTTATTG 57.359 30.769 0.00 0.00 0.00 1.90
361 375 8.502738 ACCTGATATCCACTATGTTTATGGTTT 58.497 33.333 0.00 0.00 34.89 3.27
362 376 8.045720 ACCTGATATCCACTATGTTTATGGTT 57.954 34.615 0.00 0.00 34.89 3.67
363 377 7.633018 ACCTGATATCCACTATGTTTATGGT 57.367 36.000 0.00 0.00 34.89 3.55
364 378 9.658799 CTAACCTGATATCCACTATGTTTATGG 57.341 37.037 0.00 0.00 34.58 2.74
368 382 8.938883 ACATCTAACCTGATATCCACTATGTTT 58.061 33.333 0.00 0.00 0.00 2.83
369 383 8.370940 CACATCTAACCTGATATCCACTATGTT 58.629 37.037 0.00 0.00 0.00 2.71
370 384 7.510685 ACACATCTAACCTGATATCCACTATGT 59.489 37.037 0.00 0.00 0.00 2.29
371 385 7.816513 CACACATCTAACCTGATATCCACTATG 59.183 40.741 0.00 0.00 0.00 2.23
372 386 7.730332 TCACACATCTAACCTGATATCCACTAT 59.270 37.037 0.00 0.00 0.00 2.12
373 387 7.066781 TCACACATCTAACCTGATATCCACTA 58.933 38.462 0.00 0.00 0.00 2.74
374 388 5.899547 TCACACATCTAACCTGATATCCACT 59.100 40.000 0.00 0.00 0.00 4.00
375 389 6.161855 TCACACATCTAACCTGATATCCAC 57.838 41.667 0.00 0.00 0.00 4.02
376 390 8.670521 ATATCACACATCTAACCTGATATCCA 57.329 34.615 0.00 0.00 31.69 3.41
398 412 9.775539 ACCCATCTAGATGTGACATAACTATAT 57.224 33.333 27.03 0.00 37.11 0.86
399 413 9.025041 CACCCATCTAGATGTGACATAACTATA 57.975 37.037 27.03 0.00 37.11 1.31
400 414 7.526192 GCACCCATCTAGATGTGACATAACTAT 60.526 40.741 27.03 0.00 37.11 2.12
401 415 6.239317 GCACCCATCTAGATGTGACATAACTA 60.239 42.308 27.03 0.00 37.11 2.24
402 416 5.453903 GCACCCATCTAGATGTGACATAACT 60.454 44.000 27.03 0.00 37.11 2.24
403 417 4.752101 GCACCCATCTAGATGTGACATAAC 59.248 45.833 27.03 8.10 37.11 1.89
404 418 4.408596 TGCACCCATCTAGATGTGACATAA 59.591 41.667 27.03 7.59 37.11 1.90
405 419 3.966665 TGCACCCATCTAGATGTGACATA 59.033 43.478 27.03 9.58 37.11 2.29
406 420 2.773661 TGCACCCATCTAGATGTGACAT 59.226 45.455 27.03 0.00 37.11 3.06
407 421 2.187100 TGCACCCATCTAGATGTGACA 58.813 47.619 27.03 17.90 37.11 3.58
408 422 2.988010 TGCACCCATCTAGATGTGAC 57.012 50.000 27.03 15.92 37.11 3.67
409 423 3.106827 TCTTGCACCCATCTAGATGTGA 58.893 45.455 27.03 12.56 37.11 3.58
410 424 3.201290 GTCTTGCACCCATCTAGATGTG 58.799 50.000 27.03 20.46 37.11 3.21
411 425 2.840038 TGTCTTGCACCCATCTAGATGT 59.160 45.455 27.03 10.54 37.11 3.06
412 426 3.133542 TCTGTCTTGCACCCATCTAGATG 59.866 47.826 23.53 23.53 38.51 2.90
413 427 3.133721 GTCTGTCTTGCACCCATCTAGAT 59.866 47.826 0.00 0.00 0.00 1.98
414 428 2.497675 GTCTGTCTTGCACCCATCTAGA 59.502 50.000 0.00 0.00 0.00 2.43
415 429 2.419297 GGTCTGTCTTGCACCCATCTAG 60.419 54.545 0.00 0.00 0.00 2.43
416 430 1.555075 GGTCTGTCTTGCACCCATCTA 59.445 52.381 0.00 0.00 0.00 1.98
417 431 0.326264 GGTCTGTCTTGCACCCATCT 59.674 55.000 0.00 0.00 0.00 2.90
418 432 0.326264 AGGTCTGTCTTGCACCCATC 59.674 55.000 0.00 0.00 0.00 3.51
419 433 0.773644 AAGGTCTGTCTTGCACCCAT 59.226 50.000 0.00 0.00 0.00 4.00
420 434 0.550914 AAAGGTCTGTCTTGCACCCA 59.449 50.000 0.00 0.00 0.00 4.51
421 435 1.338020 CAAAAGGTCTGTCTTGCACCC 59.662 52.381 0.00 0.00 0.00 4.61
422 436 1.269257 GCAAAAGGTCTGTCTTGCACC 60.269 52.381 0.98 0.00 42.91 5.01
423 437 1.405105 TGCAAAAGGTCTGTCTTGCAC 59.595 47.619 4.32 0.00 46.76 4.57
425 439 4.156556 TGATATGCAAAAGGTCTGTCTTGC 59.843 41.667 0.00 0.00 43.52 4.01
426 440 5.392380 GGTGATATGCAAAAGGTCTGTCTTG 60.392 44.000 0.00 0.00 0.00 3.02
427 441 4.702131 GGTGATATGCAAAAGGTCTGTCTT 59.298 41.667 0.00 0.00 0.00 3.01
428 442 4.263462 TGGTGATATGCAAAAGGTCTGTCT 60.263 41.667 0.00 0.00 0.00 3.41
429 443 4.009675 TGGTGATATGCAAAAGGTCTGTC 58.990 43.478 0.00 0.00 0.00 3.51
430 444 4.032960 TGGTGATATGCAAAAGGTCTGT 57.967 40.909 0.00 0.00 0.00 3.41
431 445 4.641541 TGATGGTGATATGCAAAAGGTCTG 59.358 41.667 0.00 0.00 0.00 3.51
432 446 4.641989 GTGATGGTGATATGCAAAAGGTCT 59.358 41.667 0.00 0.00 0.00 3.85
433 447 4.202050 GGTGATGGTGATATGCAAAAGGTC 60.202 45.833 0.00 0.00 0.00 3.85
434 448 3.701040 GGTGATGGTGATATGCAAAAGGT 59.299 43.478 0.00 0.00 0.00 3.50
435 449 3.243168 CGGTGATGGTGATATGCAAAAGG 60.243 47.826 0.00 0.00 0.00 3.11
436 450 3.243168 CCGGTGATGGTGATATGCAAAAG 60.243 47.826 0.00 0.00 0.00 2.27
437 451 2.687425 CCGGTGATGGTGATATGCAAAA 59.313 45.455 0.00 0.00 0.00 2.44
438 452 2.296792 CCGGTGATGGTGATATGCAAA 58.703 47.619 0.00 0.00 0.00 3.68
460 474 1.407437 CCTGTAGTTGAGGCACCATCC 60.407 57.143 0.00 0.00 0.00 3.51
461 475 1.555075 TCCTGTAGTTGAGGCACCATC 59.445 52.381 0.00 0.00 0.00 3.51
591 615 1.032794 CTATCTGCCGGTGCTCAGTA 58.967 55.000 1.90 0.00 38.71 2.74
593 617 1.593750 GCTATCTGCCGGTGCTCAG 60.594 63.158 1.90 1.18 38.71 3.35
763 787 0.179000 CTAGATCTGGTGGTGGTGGC 59.821 60.000 5.18 0.00 0.00 5.01
773 797 2.525381 AGGGGGCGCTAGATCTGG 60.525 66.667 7.64 2.94 0.00 3.86
854 878 2.603776 GTCGAGTCCTGGTGGGGT 60.604 66.667 0.00 0.00 35.33 4.95
855 879 2.283966 AGTCGAGTCCTGGTGGGG 60.284 66.667 0.00 0.00 35.33 4.96
884 923 2.088674 GATGGGGTGGGTCGATCGAG 62.089 65.000 20.09 0.00 0.00 4.04
950 989 0.248784 GGCCGAGATGATTTTGCAGC 60.249 55.000 0.00 0.00 0.00 5.25
1104 1143 1.819288 TGTCGGAAGCAGAAGTAGGAG 59.181 52.381 0.00 0.00 0.00 3.69
1293 1332 4.865761 TACGACGCGATGGCAGCC 62.866 66.667 15.93 3.66 39.92 4.85
1482 1521 2.271173 GTGGGGATTGGGGACGAC 59.729 66.667 0.00 0.00 0.00 4.34
1612 1651 1.882912 AACAATGAAGAGCAGCGTCA 58.117 45.000 0.00 0.00 39.31 4.35
1613 1652 2.996621 AGTAACAATGAAGAGCAGCGTC 59.003 45.455 0.00 0.00 0.00 5.19
1614 1653 2.996621 GAGTAACAATGAAGAGCAGCGT 59.003 45.455 0.00 0.00 0.00 5.07
1615 1654 2.349886 GGAGTAACAATGAAGAGCAGCG 59.650 50.000 0.00 0.00 0.00 5.18
1616 1655 3.604582 AGGAGTAACAATGAAGAGCAGC 58.395 45.455 0.00 0.00 0.00 5.25
1617 1656 5.083533 AGAGGAGTAACAATGAAGAGCAG 57.916 43.478 0.00 0.00 0.00 4.24
1644 1683 3.445805 AGAACCCTTCAACGCAAAAAGAA 59.554 39.130 0.00 0.00 0.00 2.52
1645 1684 3.020984 AGAACCCTTCAACGCAAAAAGA 58.979 40.909 0.00 0.00 0.00 2.52
1646 1685 3.115554 CAGAACCCTTCAACGCAAAAAG 58.884 45.455 0.00 0.00 0.00 2.27
1647 1686 2.494073 ACAGAACCCTTCAACGCAAAAA 59.506 40.909 0.00 0.00 0.00 1.94
1648 1687 2.096248 ACAGAACCCTTCAACGCAAAA 58.904 42.857 0.00 0.00 0.00 2.44
1649 1688 1.757682 ACAGAACCCTTCAACGCAAA 58.242 45.000 0.00 0.00 0.00 3.68
1831 1877 3.153369 TGCCTTGCTCCAACATCTAAA 57.847 42.857 0.00 0.00 0.00 1.85
1832 1878 2.877097 TGCCTTGCTCCAACATCTAA 57.123 45.000 0.00 0.00 0.00 2.10
1886 2091 9.650371 CCAATACTAATCATAACACATTTCACG 57.350 33.333 0.00 0.00 0.00 4.35
1893 2098 7.441157 GCAGTAGCCAATACTAATCATAACACA 59.559 37.037 0.00 0.00 43.13 3.72
1894 2099 7.657761 AGCAGTAGCCAATACTAATCATAACAC 59.342 37.037 0.00 0.00 43.13 3.32
1912 2117 7.676572 GCAAAGTAAACCTTATGTAGCAGTAGC 60.677 40.741 0.00 0.00 35.01 3.58
2060 2547 8.560374 GTTTCTTCATGCTAGAAGTAGTTGTTT 58.440 33.333 15.21 0.00 44.18 2.83
2063 2766 6.092807 GGGTTTCTTCATGCTAGAAGTAGTTG 59.907 42.308 15.21 0.00 44.18 3.16
2119 2822 2.063979 CCTACCACGCCTCCATGGA 61.064 63.158 15.27 15.27 39.46 3.41
2120 2823 2.505982 CCTACCACGCCTCCATGG 59.494 66.667 4.97 4.97 42.13 3.66
2121 2824 2.203070 GCCTACCACGCCTCCATG 60.203 66.667 0.00 0.00 0.00 3.66
2184 2896 6.018262 TGTGTGTAGATGCTCTAAACAAACAC 60.018 38.462 14.18 10.54 45.77 3.32
2185 2897 6.052360 TGTGTGTAGATGCTCTAAACAAACA 58.948 36.000 14.18 10.68 45.77 2.83
2186 2898 6.202954 ACTGTGTGTAGATGCTCTAAACAAAC 59.797 38.462 14.18 8.90 45.77 2.93
2188 2900 5.853936 ACTGTGTGTAGATGCTCTAAACAA 58.146 37.500 14.18 7.44 45.77 2.83
2189 2901 5.010617 TGACTGTGTGTAGATGCTCTAAACA 59.989 40.000 10.44 10.44 43.06 2.83
2190 2902 5.470368 TGACTGTGTGTAGATGCTCTAAAC 58.530 41.667 6.58 6.58 37.64 2.01
2193 2905 5.722021 TTTGACTGTGTGTAGATGCTCTA 57.278 39.130 0.00 0.00 0.00 2.43
2194 2906 4.607293 TTTGACTGTGTGTAGATGCTCT 57.393 40.909 0.00 0.00 0.00 4.09
2195 2907 5.673337 TTTTTGACTGTGTGTAGATGCTC 57.327 39.130 0.00 0.00 0.00 4.26
2214 2926 1.318576 CCAGTTGGGTCGCTCTTTTT 58.681 50.000 0.00 0.00 0.00 1.94
2215 2927 3.021451 CCAGTTGGGTCGCTCTTTT 57.979 52.632 0.00 0.00 0.00 2.27
2216 2928 4.800554 CCAGTTGGGTCGCTCTTT 57.199 55.556 0.00 0.00 0.00 2.52
2231 2943 3.346734 GGATGAAGTGGGGGCCCA 61.347 66.667 26.86 7.88 45.02 5.36
2232 2944 4.143301 GGGATGAAGTGGGGGCCC 62.143 72.222 15.76 15.76 0.00 5.80
2233 2945 1.286305 TTAGGGATGAAGTGGGGGCC 61.286 60.000 0.00 0.00 0.00 5.80
2234 2946 0.629058 TTTAGGGATGAAGTGGGGGC 59.371 55.000 0.00 0.00 0.00 5.80
2235 2947 1.408266 CGTTTAGGGATGAAGTGGGGG 60.408 57.143 0.00 0.00 0.00 5.40
2236 2948 1.280998 ACGTTTAGGGATGAAGTGGGG 59.719 52.381 0.00 0.00 0.00 4.96
2237 2949 2.629051 GACGTTTAGGGATGAAGTGGG 58.371 52.381 0.00 0.00 0.00 4.61
2238 2950 2.629051 GGACGTTTAGGGATGAAGTGG 58.371 52.381 0.00 0.00 0.00 4.00
2239 2951 2.268298 CGGACGTTTAGGGATGAAGTG 58.732 52.381 0.00 0.00 0.00 3.16
2240 2952 1.206371 CCGGACGTTTAGGGATGAAGT 59.794 52.381 0.00 0.00 0.00 3.01
2241 2953 1.479323 TCCGGACGTTTAGGGATGAAG 59.521 52.381 0.00 0.00 0.00 3.02
2242 2954 1.559368 TCCGGACGTTTAGGGATGAA 58.441 50.000 0.00 0.00 0.00 2.57
2243 2955 1.684983 GATCCGGACGTTTAGGGATGA 59.315 52.381 6.12 0.00 39.32 2.92
2244 2956 1.602165 CGATCCGGACGTTTAGGGATG 60.602 57.143 6.12 5.03 39.32 3.51
2245 2957 0.672342 CGATCCGGACGTTTAGGGAT 59.328 55.000 6.12 9.47 41.83 3.85
2246 2958 0.394216 TCGATCCGGACGTTTAGGGA 60.394 55.000 20.62 0.00 0.00 4.20
2247 2959 0.248784 GTCGATCCGGACGTTTAGGG 60.249 60.000 20.62 0.00 0.00 3.53
2248 2960 3.247033 GTCGATCCGGACGTTTAGG 57.753 57.895 20.62 0.00 0.00 2.69
2258 2970 2.056481 GAGGTACACCCGTCGATCCG 62.056 65.000 0.00 0.00 38.74 4.18
2259 2971 1.033746 TGAGGTACACCCGTCGATCC 61.034 60.000 0.00 0.00 38.74 3.36
2260 2972 0.813184 TTGAGGTACACCCGTCGATC 59.187 55.000 0.00 0.00 38.74 3.69
2261 2973 1.067354 GTTTGAGGTACACCCGTCGAT 60.067 52.381 0.00 0.00 38.74 3.59
2262 2974 0.314935 GTTTGAGGTACACCCGTCGA 59.685 55.000 0.00 0.00 38.74 4.20
2263 2975 0.668401 GGTTTGAGGTACACCCGTCG 60.668 60.000 0.00 0.00 38.74 5.12
2264 2976 0.321034 GGGTTTGAGGTACACCCGTC 60.321 60.000 2.78 0.00 38.74 4.79
2265 2977 1.055551 TGGGTTTGAGGTACACCCGT 61.056 55.000 12.41 0.00 43.33 5.28
2266 2978 0.326927 ATGGGTTTGAGGTACACCCG 59.673 55.000 12.41 0.00 43.33 5.28
2267 2979 1.633945 AGATGGGTTTGAGGTACACCC 59.366 52.381 10.73 10.73 40.90 4.61
2268 2980 2.304761 TGAGATGGGTTTGAGGTACACC 59.695 50.000 0.00 0.00 0.00 4.16
2269 2981 3.695830 TGAGATGGGTTTGAGGTACAC 57.304 47.619 0.00 0.00 0.00 2.90
2270 2982 4.715534 TTTGAGATGGGTTTGAGGTACA 57.284 40.909 0.00 0.00 0.00 2.90
2271 2983 5.501156 AGATTTGAGATGGGTTTGAGGTAC 58.499 41.667 0.00 0.00 0.00 3.34
2272 2984 5.779241 AGATTTGAGATGGGTTTGAGGTA 57.221 39.130 0.00 0.00 0.00 3.08
2273 2985 4.664688 AGATTTGAGATGGGTTTGAGGT 57.335 40.909 0.00 0.00 0.00 3.85
2274 2986 5.994250 TCTAGATTTGAGATGGGTTTGAGG 58.006 41.667 0.00 0.00 0.00 3.86
2275 2987 6.760770 GTCTCTAGATTTGAGATGGGTTTGAG 59.239 42.308 0.00 0.00 41.79 3.02
2276 2988 6.213397 TGTCTCTAGATTTGAGATGGGTTTGA 59.787 38.462 0.00 0.00 41.79 2.69
2277 2989 6.409704 TGTCTCTAGATTTGAGATGGGTTTG 58.590 40.000 0.00 0.00 41.79 2.93
2278 2990 6.627087 TGTCTCTAGATTTGAGATGGGTTT 57.373 37.500 0.00 0.00 41.79 3.27
2279 2991 6.627087 TTGTCTCTAGATTTGAGATGGGTT 57.373 37.500 0.00 0.00 41.79 4.11
2280 2992 6.821616 ATTGTCTCTAGATTTGAGATGGGT 57.178 37.500 0.00 0.00 41.79 4.51
2281 2993 8.591940 TCATATTGTCTCTAGATTTGAGATGGG 58.408 37.037 0.00 0.00 41.79 4.00
2282 2994 9.642327 CTCATATTGTCTCTAGATTTGAGATGG 57.358 37.037 0.00 0.00 41.79 3.51
2283 2995 9.642327 CCTCATATTGTCTCTAGATTTGAGATG 57.358 37.037 10.54 4.66 41.79 2.90
2284 2996 8.814931 CCCTCATATTGTCTCTAGATTTGAGAT 58.185 37.037 10.54 0.00 41.79 2.75
2285 2997 7.256119 GCCCTCATATTGTCTCTAGATTTGAGA 60.256 40.741 10.54 0.00 38.13 3.27
2286 2998 6.873076 GCCCTCATATTGTCTCTAGATTTGAG 59.127 42.308 0.00 0.00 0.00 3.02
2287 2999 6.517362 CGCCCTCATATTGTCTCTAGATTTGA 60.517 42.308 0.00 0.00 0.00 2.69
2288 3000 5.636965 CGCCCTCATATTGTCTCTAGATTTG 59.363 44.000 0.00 0.00 0.00 2.32
2289 3001 5.540337 TCGCCCTCATATTGTCTCTAGATTT 59.460 40.000 0.00 0.00 0.00 2.17
2290 3002 5.047660 GTCGCCCTCATATTGTCTCTAGATT 60.048 44.000 0.00 0.00 0.00 2.40
2291 3003 4.461081 GTCGCCCTCATATTGTCTCTAGAT 59.539 45.833 0.00 0.00 0.00 1.98
2292 3004 3.821600 GTCGCCCTCATATTGTCTCTAGA 59.178 47.826 0.00 0.00 0.00 2.43
2293 3005 3.057174 GGTCGCCCTCATATTGTCTCTAG 60.057 52.174 0.00 0.00 0.00 2.43
2294 3006 2.891580 GGTCGCCCTCATATTGTCTCTA 59.108 50.000 0.00 0.00 0.00 2.43
2295 3007 1.689273 GGTCGCCCTCATATTGTCTCT 59.311 52.381 0.00 0.00 0.00 3.10
2296 3008 1.603172 CGGTCGCCCTCATATTGTCTC 60.603 57.143 0.00 0.00 0.00 3.36
2297 3009 0.389391 CGGTCGCCCTCATATTGTCT 59.611 55.000 0.00 0.00 0.00 3.41
2298 3010 0.600255 CCGGTCGCCCTCATATTGTC 60.600 60.000 0.00 0.00 0.00 3.18
2299 3011 1.335132 ACCGGTCGCCCTCATATTGT 61.335 55.000 0.00 0.00 0.00 2.71
2300 3012 0.600255 GACCGGTCGCCCTCATATTG 60.600 60.000 20.85 0.00 0.00 1.90
2301 3013 1.046472 TGACCGGTCGCCCTCATATT 61.046 55.000 28.70 0.00 0.00 1.28
2302 3014 1.456892 TGACCGGTCGCCCTCATAT 60.457 57.895 28.70 0.00 0.00 1.78
2303 3015 2.043752 TGACCGGTCGCCCTCATA 60.044 61.111 28.70 6.50 0.00 2.15
2304 3016 3.771160 GTGACCGGTCGCCCTCAT 61.771 66.667 33.39 0.00 34.22 2.90
2306 3018 4.736896 GTGTGACCGGTCGCCCTC 62.737 72.222 37.94 25.92 39.23 4.30
2316 3028 4.736896 GAGCGTCCGGGTGTGACC 62.737 72.222 0.00 0.00 37.60 4.02
2317 3029 4.736896 GGAGCGTCCGGGTGTGAC 62.737 72.222 0.00 0.00 0.00 3.67
2331 3043 4.803426 GCCACGTCAGAGCGGGAG 62.803 72.222 0.00 0.00 37.48 4.30
2336 3048 1.344942 CTTGTACGCCACGTCAGAGC 61.345 60.000 0.00 0.00 41.54 4.09
2337 3049 0.240145 TCTTGTACGCCACGTCAGAG 59.760 55.000 0.00 0.00 41.54 3.35
2338 3050 0.240145 CTCTTGTACGCCACGTCAGA 59.760 55.000 0.00 0.00 41.54 3.27
2339 3051 1.344942 GCTCTTGTACGCCACGTCAG 61.345 60.000 0.00 0.00 41.54 3.51
2340 3052 1.372499 GCTCTTGTACGCCACGTCA 60.372 57.895 0.00 0.00 41.54 4.35
2341 3053 0.942410 TTGCTCTTGTACGCCACGTC 60.942 55.000 0.00 0.00 41.54 4.34
2342 3054 0.531090 TTTGCTCTTGTACGCCACGT 60.531 50.000 0.00 0.00 44.35 4.49
2343 3055 0.110823 GTTTGCTCTTGTACGCCACG 60.111 55.000 0.00 0.00 0.00 4.94
2344 3056 0.237498 GGTTTGCTCTTGTACGCCAC 59.763 55.000 0.00 0.00 0.00 5.01
2345 3057 0.887387 GGGTTTGCTCTTGTACGCCA 60.887 55.000 0.00 0.00 0.00 5.69
2346 3058 1.583495 GGGGTTTGCTCTTGTACGCC 61.583 60.000 0.00 0.00 36.62 5.68
2347 3059 0.887387 TGGGGTTTGCTCTTGTACGC 60.887 55.000 0.00 0.00 0.00 4.42
2348 3060 0.872388 GTGGGGTTTGCTCTTGTACG 59.128 55.000 0.00 0.00 0.00 3.67
2349 3061 1.202891 AGGTGGGGTTTGCTCTTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
2350 3062 1.145571 AGGTGGGGTTTGCTCTTGTA 58.854 50.000 0.00 0.00 0.00 2.41
2351 3063 0.468029 CAGGTGGGGTTTGCTCTTGT 60.468 55.000 0.00 0.00 0.00 3.16
2352 3064 1.809567 GCAGGTGGGGTTTGCTCTTG 61.810 60.000 0.00 0.00 35.05 3.02
2353 3065 1.531602 GCAGGTGGGGTTTGCTCTT 60.532 57.895 0.00 0.00 35.05 2.85
2354 3066 2.116125 GCAGGTGGGGTTTGCTCT 59.884 61.111 0.00 0.00 35.05 4.09
2355 3067 2.203480 TGCAGGTGGGGTTTGCTC 60.203 61.111 0.00 0.00 38.60 4.26
2356 3068 2.203538 CTGCAGGTGGGGTTTGCT 60.204 61.111 5.57 0.00 38.60 3.91
2357 3069 3.994853 GCTGCAGGTGGGGTTTGC 61.995 66.667 17.12 0.00 38.30 3.68
2358 3070 1.809567 GAAGCTGCAGGTGGGGTTTG 61.810 60.000 20.97 0.00 0.00 2.93
2359 3071 1.531602 GAAGCTGCAGGTGGGGTTT 60.532 57.895 20.97 1.43 0.00 3.27
2360 3072 2.116125 GAAGCTGCAGGTGGGGTT 59.884 61.111 20.97 2.31 0.00 4.11
2361 3073 3.177884 TGAAGCTGCAGGTGGGGT 61.178 61.111 20.97 2.77 0.00 4.95
2362 3074 2.674380 GTGAAGCTGCAGGTGGGG 60.674 66.667 20.97 0.00 0.00 4.96
2363 3075 0.896940 AATGTGAAGCTGCAGGTGGG 60.897 55.000 20.97 0.00 0.00 4.61
2364 3076 0.524862 GAATGTGAAGCTGCAGGTGG 59.475 55.000 20.97 0.00 0.00 4.61
2365 3077 1.241165 TGAATGTGAAGCTGCAGGTG 58.759 50.000 20.97 0.00 0.00 4.00
2366 3078 1.816835 CATGAATGTGAAGCTGCAGGT 59.183 47.619 13.85 13.85 0.00 4.00
2367 3079 1.816835 ACATGAATGTGAAGCTGCAGG 59.183 47.619 17.12 0.00 40.03 4.85
2368 3080 3.570926 AACATGAATGTGAAGCTGCAG 57.429 42.857 10.11 10.11 41.61 4.41
2369 3081 3.570975 AGAAACATGAATGTGAAGCTGCA 59.429 39.130 0.00 0.00 41.61 4.41
2370 3082 3.918591 CAGAAACATGAATGTGAAGCTGC 59.081 43.478 0.00 0.00 41.61 5.25
2371 3083 4.915667 CACAGAAACATGAATGTGAAGCTG 59.084 41.667 14.69 5.42 44.56 4.24
2372 3084 4.558095 GCACAGAAACATGAATGTGAAGCT 60.558 41.667 20.39 0.00 44.56 3.74
2373 3085 3.671928 GCACAGAAACATGAATGTGAAGC 59.328 43.478 20.39 13.16 44.56 3.86
2374 3086 4.915667 CAGCACAGAAACATGAATGTGAAG 59.084 41.667 20.39 11.85 44.56 3.02
2375 3087 4.338964 ACAGCACAGAAACATGAATGTGAA 59.661 37.500 20.39 0.00 44.56 3.18
2376 3088 3.884693 ACAGCACAGAAACATGAATGTGA 59.115 39.130 20.39 0.00 44.56 3.58
2377 3089 3.978855 CACAGCACAGAAACATGAATGTG 59.021 43.478 0.00 9.55 44.58 3.21
2378 3090 3.551454 GCACAGCACAGAAACATGAATGT 60.551 43.478 0.00 0.00 44.20 2.71
2379 3091 2.984471 GCACAGCACAGAAACATGAATG 59.016 45.455 0.00 0.00 0.00 2.67
2380 3092 2.624364 TGCACAGCACAGAAACATGAAT 59.376 40.909 0.00 0.00 31.71 2.57
2381 3093 2.022934 TGCACAGCACAGAAACATGAA 58.977 42.857 0.00 0.00 31.71 2.57
2382 3094 1.677942 TGCACAGCACAGAAACATGA 58.322 45.000 0.00 0.00 31.71 3.07
2383 3095 2.324860 CATGCACAGCACAGAAACATG 58.675 47.619 0.00 0.00 43.04 3.21
2384 3096 1.336517 GCATGCACAGCACAGAAACAT 60.337 47.619 14.21 0.00 43.04 2.71
2385 3097 0.031043 GCATGCACAGCACAGAAACA 59.969 50.000 14.21 0.00 43.04 2.83
2386 3098 0.665369 GGCATGCACAGCACAGAAAC 60.665 55.000 21.36 0.00 43.04 2.78
2387 3099 1.661480 GGCATGCACAGCACAGAAA 59.339 52.632 21.36 0.00 43.04 2.52
2388 3100 2.270257 GGGCATGCACAGCACAGAA 61.270 57.895 21.36 0.00 43.04 3.02
2389 3101 2.674033 GGGCATGCACAGCACAGA 60.674 61.111 21.36 0.00 43.04 3.41
2390 3102 2.675423 AGGGCATGCACAGCACAG 60.675 61.111 24.51 0.00 43.04 3.66
2391 3103 2.674033 GAGGGCATGCACAGCACA 60.674 61.111 24.51 0.00 43.04 4.57
2392 3104 2.360852 AGAGGGCATGCACAGCAC 60.361 61.111 24.51 10.38 43.04 4.40
2393 3105 2.045634 GAGAGGGCATGCACAGCA 60.046 61.111 24.51 0.00 44.86 4.41
2394 3106 2.827642 GGAGAGGGCATGCACAGC 60.828 66.667 24.51 13.92 0.00 4.40
2395 3107 2.513204 CGGAGAGGGCATGCACAG 60.513 66.667 24.51 3.79 0.00 3.66
2396 3108 3.321648 ACGGAGAGGGCATGCACA 61.322 61.111 24.51 0.00 0.00 4.57
2397 3109 2.803155 TTCACGGAGAGGGCATGCAC 62.803 60.000 21.36 17.78 0.00 4.57
2398 3110 2.592032 TTCACGGAGAGGGCATGCA 61.592 57.895 21.36 0.00 0.00 3.96
2399 3111 2.109126 GTTCACGGAGAGGGCATGC 61.109 63.158 9.90 9.90 0.00 4.06
2400 3112 1.450312 GGTTCACGGAGAGGGCATG 60.450 63.158 0.00 0.00 0.00 4.06
2401 3113 2.670148 GGGTTCACGGAGAGGGCAT 61.670 63.158 0.00 0.00 0.00 4.40
2402 3114 3.319198 GGGTTCACGGAGAGGGCA 61.319 66.667 0.00 0.00 0.00 5.36
2403 3115 4.452733 CGGGTTCACGGAGAGGGC 62.453 72.222 0.00 0.00 0.00 5.19
2404 3116 2.678934 TCGGGTTCACGGAGAGGG 60.679 66.667 0.00 0.00 0.00 4.30
2405 3117 2.885861 CTCGGGTTCACGGAGAGG 59.114 66.667 0.00 0.00 46.30 3.69
2406 3118 1.030488 TAGCTCGGGTTCACGGAGAG 61.030 60.000 0.00 0.00 46.30 3.20
2407 3119 1.001764 TAGCTCGGGTTCACGGAGA 60.002 57.895 0.00 0.00 46.30 3.71
2408 3120 1.433879 CTAGCTCGGGTTCACGGAG 59.566 63.158 0.00 0.00 46.18 4.63
2409 3121 2.707849 GCTAGCTCGGGTTCACGGA 61.708 63.158 7.70 0.00 0.00 4.69
2410 3122 2.202756 GCTAGCTCGGGTTCACGG 60.203 66.667 7.70 0.00 0.00 4.94
2411 3123 2.202756 GGCTAGCTCGGGTTCACG 60.203 66.667 15.72 0.00 0.00 4.35
2412 3124 2.202756 CGGCTAGCTCGGGTTCAC 60.203 66.667 15.72 0.00 0.00 3.18
2413 3125 4.143333 GCGGCTAGCTCGGGTTCA 62.143 66.667 21.70 0.00 44.04 3.18
2458 3170 3.839432 CTCGGACGGCTTCCCTCC 61.839 72.222 4.21 0.00 42.27 4.30
2459 3171 4.516195 GCTCGGACGGCTTCCCTC 62.516 72.222 4.21 0.00 42.27 4.30
2460 3172 3.657038 TAGCTCGGACGGCTTCCCT 62.657 63.158 4.21 0.00 42.27 4.20
2461 3173 3.140225 CTAGCTCGGACGGCTTCCC 62.140 68.421 4.21 0.00 42.27 3.97
2462 3174 2.413765 CTAGCTCGGACGGCTTCC 59.586 66.667 11.67 0.00 40.74 3.46
2463 3175 2.413765 CCTAGCTCGGACGGCTTC 59.586 66.667 0.00 0.00 40.74 3.86
2464 3176 3.839432 GCCTAGCTCGGACGGCTT 61.839 66.667 8.81 0.07 40.74 4.35
2471 3183 4.691820 CTAGCGCGCCTAGCTCGG 62.692 72.222 30.33 0.00 44.79 4.63
2472 3184 3.955101 ACTAGCGCGCCTAGCTCG 61.955 66.667 30.33 16.07 46.17 5.03
2473 3185 2.354072 CACTAGCGCGCCTAGCTC 60.354 66.667 30.33 0.00 46.17 4.09
2474 3186 2.829003 TCACTAGCGCGCCTAGCT 60.829 61.111 30.33 19.37 46.17 3.32
2475 3187 2.655685 GTCACTAGCGCGCCTAGC 60.656 66.667 30.33 13.85 46.17 3.42
2477 3189 3.884350 CCGTCACTAGCGCGCCTA 61.884 66.667 30.33 17.98 0.00 3.93
2481 3193 4.476410 TGCTCCGTCACTAGCGCG 62.476 66.667 0.00 0.00 41.77 6.86
2482 3194 2.881352 GTGCTCCGTCACTAGCGC 60.881 66.667 0.00 0.00 41.77 5.92
2483 3195 0.867753 GATGTGCTCCGTCACTAGCG 60.868 60.000 0.00 0.00 41.77 4.26
2484 3196 0.528684 GGATGTGCTCCGTCACTAGC 60.529 60.000 0.00 0.00 37.81 3.42
2485 3197 3.650409 GGATGTGCTCCGTCACTAG 57.350 57.895 0.00 0.00 37.81 2.57
2533 3245 4.615834 CTCGGTCTCTAGCGCGGC 62.616 72.222 8.83 0.00 46.01 6.53
2534 3246 4.615834 GCTCGGTCTCTAGCGCGG 62.616 72.222 8.83 0.00 46.01 6.46
2535 3247 3.515286 GAGCTCGGTCTCTAGCGCG 62.515 68.421 0.00 0.00 46.01 6.86
2536 3248 2.330041 GAGCTCGGTCTCTAGCGC 59.670 66.667 0.00 0.00 46.01 5.92
2538 3250 1.454111 TGGGAGCTCGGTCTCTAGC 60.454 63.158 7.83 0.00 39.08 3.42
2539 3251 0.394488 TGTGGGAGCTCGGTCTCTAG 60.394 60.000 7.83 0.00 33.70 2.43
2540 3252 0.394488 CTGTGGGAGCTCGGTCTCTA 60.394 60.000 7.83 0.00 33.70 2.43
2541 3253 1.680651 CTGTGGGAGCTCGGTCTCT 60.681 63.158 7.83 0.00 33.70 3.10
2542 3254 2.888863 CTGTGGGAGCTCGGTCTC 59.111 66.667 7.83 1.94 0.00 3.36
2543 3255 3.386237 GCTGTGGGAGCTCGGTCT 61.386 66.667 7.83 0.00 45.21 3.85
2551 3263 4.767255 GCGGGTGAGCTGTGGGAG 62.767 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.