AutoCloner

Multiple sequence alignment - TraesCS3D01G279100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G279100	chr3D	100.000	3519	0	0	1	3519	386728854	386725336	0.000000e+00	6499.0
1	TraesCS3D01G279100	chr3D	92.179	179	8	2	2869	3047	386725805	386725633	7.540000e-62	248.0
2	TraesCS3D01G279100	chr3D	92.179	179	8	2	3050	3222	386725986	386725808	7.540000e-62	248.0
3	TraesCS3D01G279100	chr3D	87.879	99	6	2	3425	3518	6298016	6297919	1.030000e-20	111.0
4	TraesCS3D01G279100	chr3D	87.629	97	7	1	3427	3518	480959968	480960064	1.340000e-19	108.0
5	TraesCS3D01G279100	chr3D	91.489	47	2	2	2847	2891	187851373	187851327	2.930000e-06	63.9
6	TraesCS3D01G279100	chr3A	91.085	2894	147	49	190	3047	508197092	508194274	0.000000e+00	3812.0
7	TraesCS3D01G279100	chr3A	88.333	240	12	6	3058	3283	508194441	508194204	1.240000e-69	274.0
8	TraesCS3D01G279100	chr3A	88.000	100	7	1	3424	3518	77489107	77489206	2.870000e-21	113.0
9	TraesCS3D01G279100	chr3A	94.872	39	2	0	2845	2883	730911338	730911300	1.050000e-05	62.1
10	TraesCS3D01G279100	chr3B	90.798	2782	145	53	279	3010	502924227	502921507	0.000000e+00	3616.0
11	TraesCS3D01G279100	chr3B	83.226	155	12	7	3050	3199	502921640	502921495	2.850000e-26	130.0
12	TraesCS3D01G279100	chr3B	91.111	45	4	0	2839	2883	809346644	809346688	1.050000e-05	62.1
13	TraesCS3D01G279100	chr1B	84.492	187	16	7	1030	1209	589135549	589135369	4.670000e-39	172.0
14	TraesCS3D01G279100	chr1B	87.000	100	8	1	3424	3518	43981111	43981210	1.340000e-19	108.0
15	TraesCS3D01G279100	chr1B	95.349	43	2	0	2840	2882	396597539	396597581	6.300000e-08	69.4
16	TraesCS3D01G279100	chr1B	91.667	48	4	0	2834	2881	536755491	536755538	2.270000e-07	67.6
17	TraesCS3D01G279100	chr1D	83.889	180	26	1	1030	1209	435803041	435802865	6.040000e-38	169.0
18	TraesCS3D01G279100	chr1D	86.275	102	8	2	3423	3518	302826026	302826127	4.800000e-19	106.0
19	TraesCS3D01G279100	chr1A	82.873	181	27	2	1030	1209	533149659	533149482	3.640000e-35	159.0
20	TraesCS3D01G279100	chr5B	88.119	101	7	1	3424	3519	501242457	501242557	7.980000e-22	115.0
21	TraesCS3D01G279100	chr5B	80.769	104	4	12	2839	2935	467021656	467021750	2.270000e-07	67.6
22	TraesCS3D01G279100	chrUn	87.879	99	9	1	3423	3518	29984867	29984769	2.870000e-21	113.0
23	TraesCS3D01G279100	chrUn	86.275	102	8	2	3423	3518	20783600	20783701	4.800000e-19	106.0
24	TraesCS3D01G279100	chr2D	87.755	98	7	3	3426	3518	160326204	160326107	3.710000e-20	110.0
25	TraesCS3D01G279100	chr2D	100.000	36	0	0	2847	2882	522526101	522526136	2.270000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G279100	chr3D	386725336	386728854	3518	True	2331.666667	6499	94.786	1	3519	3	chr3D.!!$R3	3518
1	TraesCS3D01G279100	chr3A	508194204	508197092	2888	True	2043.000000	3812	89.709	190	3283	2	chr3A.!!$R2	3093
2	TraesCS3D01G279100	chr3B	502921495	502924227	2732	True	1873.000000	3616	87.012	279	3199	2	chr3B.!!$R1	2920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
42	43	0.032117	GCAAATTAGGGAGGGGGCTT	60.032	55.0	4.35	F
96	97	0.036875	GTGTGGGAGGTCAAGGGAAG	59.963	60.0	3.46	F
977	986	0.395862	TCTTAGCGTGGGAGGAGAGG	60.396	60.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1131	1147	0.533085	GGCGGTAGATCTTGGCCTTC	60.533	60.0	18.80	0.00	40.59	3.46	R
2358	2404	0.309922	CAGCACCACAAAGACTGCAG	59.690	55.0	13.48	13.48	31.71	4.41	R
2559	2617	0.036010	ATGAGGCGACAAGTTGAGGG	60.036	55.0	10.54	0.00	0.00	4.30	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.094684	GCGGGTTCGTCATCAGAG	57.905	61.111	0.00	0.00	38.89	3.35
18	19	1.215647	GCGGGTTCGTCATCAGAGT	59.784	57.895	0.00	0.00	38.89	3.24
19	20	0.389948	GCGGGTTCGTCATCAGAGTT	60.390	55.000	0.00	0.00	38.89	3.01
20	21	1.350193	CGGGTTCGTCATCAGAGTTG	58.650	55.000	0.00	0.00	0.00	3.16
21	22	1.079503	GGGTTCGTCATCAGAGTTGC	58.920	55.000	0.00	0.00	0.00	4.17
22	23	1.338200	GGGTTCGTCATCAGAGTTGCT	60.338	52.381	0.00	0.00	0.00	3.91
23	24	1.728971	GGTTCGTCATCAGAGTTGCTG	59.271	52.381	0.00	0.00	46.31	4.41
24	25	1.127582	GTTCGTCATCAGAGTTGCTGC	59.872	52.381	0.00	0.00	44.52	5.25
25	26	0.318120	TCGTCATCAGAGTTGCTGCA	59.682	50.000	0.00	0.00	44.52	4.41
26	27	1.150827	CGTCATCAGAGTTGCTGCAA	58.849	50.000	11.69	11.69	44.52	4.08
27	28	1.532437	CGTCATCAGAGTTGCTGCAAA	59.468	47.619	17.80	0.83	44.52	3.68
28	29	2.161012	CGTCATCAGAGTTGCTGCAAAT	59.839	45.455	17.80	16.78	44.52	2.32
29	30	3.365666	CGTCATCAGAGTTGCTGCAAATT	60.366	43.478	17.80	8.52	44.52	1.82
30	31	4.142838	CGTCATCAGAGTTGCTGCAAATTA	60.143	41.667	17.80	6.30	44.52	1.40
31	32	5.330295	GTCATCAGAGTTGCTGCAAATTAG	58.670	41.667	17.80	12.24	44.52	1.73
32	33	4.397103	TCATCAGAGTTGCTGCAAATTAGG	59.603	41.667	17.80	9.47	44.52	2.69
33	34	3.084039	TCAGAGTTGCTGCAAATTAGGG	58.916	45.455	17.80	7.08	44.52	3.53
34	35	3.084039	CAGAGTTGCTGCAAATTAGGGA	58.916	45.455	17.80	0.00	37.90	4.20
35	36	3.128242	CAGAGTTGCTGCAAATTAGGGAG	59.872	47.826	17.80	0.32	37.90	4.30
36	37	2.424956	GAGTTGCTGCAAATTAGGGAGG	59.575	50.000	17.80	0.00	0.00	4.30
37	38	1.478105	GTTGCTGCAAATTAGGGAGGG	59.522	52.381	17.80	0.00	0.00	4.30
38	39	0.033208	TGCTGCAAATTAGGGAGGGG	60.033	55.000	0.00	0.00	0.00	4.79
39	40	0.756815	GCTGCAAATTAGGGAGGGGG	60.757	60.000	0.00	0.00	0.00	5.40
40	41	0.756815	CTGCAAATTAGGGAGGGGGC	60.757	60.000	0.00	0.00	0.00	5.80
41	42	1.221213	TGCAAATTAGGGAGGGGGCT	61.221	55.000	0.00	0.00	0.00	5.19
42	43	0.032117	GCAAATTAGGGAGGGGGCTT	60.032	55.000	0.00	0.00	0.00	4.35
43	44	1.216930	GCAAATTAGGGAGGGGGCTTA	59.783	52.381	0.00	0.00	0.00	3.09
44	45	2.358826	GCAAATTAGGGAGGGGGCTTAA	60.359	50.000	0.00	0.00	0.00	1.85
45	46	3.884123	GCAAATTAGGGAGGGGGCTTAAA	60.884	47.826	0.00	0.00	0.00	1.52
46	47	3.960755	CAAATTAGGGAGGGGGCTTAAAG	59.039	47.826	0.00	0.00	0.00	1.85
47	48	1.603634	TTAGGGAGGGGGCTTAAAGG	58.396	55.000	0.00	0.00	0.00	3.11
48	49	0.328158	TAGGGAGGGGGCTTAAAGGG	60.328	60.000	0.00	0.00	0.00	3.95
49	50	1.621514	GGGAGGGGGCTTAAAGGGA	60.622	63.158	0.00	0.00	0.00	4.20
50	51	0.999493	GGGAGGGGGCTTAAAGGGAT	60.999	60.000	0.00	0.00	0.00	3.85
51	52	0.186143	GGAGGGGGCTTAAAGGGATG	59.814	60.000	0.00	0.00	0.00	3.51
52	53	0.186143	GAGGGGGCTTAAAGGGATGG	59.814	60.000	0.00	0.00	0.00	3.51
53	54	1.457643	GGGGGCTTAAAGGGATGGC	60.458	63.158	0.00	0.00	0.00	4.40
54	55	1.620818	GGGGCTTAAAGGGATGGCT	59.379	57.895	0.00	0.00	0.00	4.75
55	56	0.850784	GGGGCTTAAAGGGATGGCTA	59.149	55.000	0.00	0.00	0.00	3.93
56	57	1.202940	GGGGCTTAAAGGGATGGCTAG	60.203	57.143	0.00	0.00	0.00	3.42
57	58	1.774856	GGGCTTAAAGGGATGGCTAGA	59.225	52.381	0.00	0.00	0.00	2.43
58	59	2.224646	GGGCTTAAAGGGATGGCTAGAG	60.225	54.545	0.00	0.00	0.00	2.43
59	60	2.224646	GGCTTAAAGGGATGGCTAGAGG	60.225	54.545	0.00	0.00	0.00	3.69
60	61	2.439880	GCTTAAAGGGATGGCTAGAGGT	59.560	50.000	0.00	0.00	0.00	3.85
61	62	3.745797	GCTTAAAGGGATGGCTAGAGGTG	60.746	52.174	0.00	0.00	0.00	4.00
62	63	1.216990	AAAGGGATGGCTAGAGGTGG	58.783	55.000	0.00	0.00	0.00	4.61
63	64	0.044855	AAGGGATGGCTAGAGGTGGT	59.955	55.000	0.00	0.00	0.00	4.16
64	65	0.692419	AGGGATGGCTAGAGGTGGTG	60.692	60.000	0.00	0.00	0.00	4.17
65	66	1.700042	GGGATGGCTAGAGGTGGTGG	61.700	65.000	0.00	0.00	0.00	4.61
66	67	0.691078	GGATGGCTAGAGGTGGTGGA	60.691	60.000	0.00	0.00	0.00	4.02
67	68	0.466124	GATGGCTAGAGGTGGTGGAC	59.534	60.000	0.00	0.00	0.00	4.02
68	69	0.252696	ATGGCTAGAGGTGGTGGACA	60.253	55.000	0.00	0.00	0.00	4.02
69	70	0.472925	TGGCTAGAGGTGGTGGACAA	60.473	55.000	0.00	0.00	0.00	3.18
70	71	0.690762	GGCTAGAGGTGGTGGACAAA	59.309	55.000	0.00	0.00	0.00	2.83
71	72	1.073284	GGCTAGAGGTGGTGGACAAAA	59.927	52.381	0.00	0.00	0.00	2.44
72	73	2.152016	GCTAGAGGTGGTGGACAAAAC	58.848	52.381	0.00	0.00	0.00	2.43
73	74	2.413837	CTAGAGGTGGTGGACAAAACG	58.586	52.381	0.00	0.00	0.00	3.60
74	75	0.179029	AGAGGTGGTGGACAAAACGG	60.179	55.000	0.00	0.00	0.00	4.44
75	76	0.464916	GAGGTGGTGGACAAAACGGT	60.465	55.000	0.00	0.00	0.00	4.83
76	77	0.750182	AGGTGGTGGACAAAACGGTG	60.750	55.000	0.00	0.00	0.00	4.94
77	78	1.730451	GGTGGTGGACAAAACGGTGG	61.730	60.000	0.00	0.00	0.00	4.61
78	79	1.033202	GTGGTGGACAAAACGGTGGT	61.033	55.000	0.00	0.00	0.00	4.16
79	80	1.032657	TGGTGGACAAAACGGTGGTG	61.033	55.000	0.00	0.00	0.00	4.17
80	81	1.033202	GGTGGACAAAACGGTGGTGT	61.033	55.000	0.00	0.00	0.00	4.16
81	82	0.099791	GTGGACAAAACGGTGGTGTG	59.900	55.000	2.03	0.00	0.00	3.82
82	83	1.032657	TGGACAAAACGGTGGTGTGG	61.033	55.000	2.03	0.00	0.00	4.17
83	84	1.730451	GGACAAAACGGTGGTGTGGG	61.730	60.000	2.03	0.00	0.00	4.61
84	85	0.748729	GACAAAACGGTGGTGTGGGA	60.749	55.000	2.03	0.00	0.00	4.37
85	86	0.750182	ACAAAACGGTGGTGTGGGAG	60.750	55.000	0.00	0.00	0.00	4.30
86	87	1.152839	AAAACGGTGGTGTGGGAGG	60.153	57.895	0.00	0.00	0.00	4.30
87	88	1.928714	AAAACGGTGGTGTGGGAGGT	61.929	55.000	0.00	0.00	0.00	3.85
88	89	2.333701	AAACGGTGGTGTGGGAGGTC	62.334	60.000	0.00	0.00	0.00	3.85
89	90	3.238497	CGGTGGTGTGGGAGGTCA	61.238	66.667	0.00	0.00	0.00	4.02
90	91	2.813726	CGGTGGTGTGGGAGGTCAA	61.814	63.158	0.00	0.00	0.00	3.18
91	92	1.073199	GGTGGTGTGGGAGGTCAAG	59.927	63.158	0.00	0.00	0.00	3.02
92	93	1.073199	GTGGTGTGGGAGGTCAAGG	59.927	63.158	0.00	0.00	0.00	3.61
93	94	2.153401	TGGTGTGGGAGGTCAAGGG	61.153	63.158	0.00	0.00	0.00	3.95
94	95	1.846124	GGTGTGGGAGGTCAAGGGA	60.846	63.158	0.00	0.00	0.00	4.20
95	96	1.423794	GGTGTGGGAGGTCAAGGGAA	61.424	60.000	0.00	0.00	0.00	3.97
96	97	0.036875	GTGTGGGAGGTCAAGGGAAG	59.963	60.000	0.00	0.00	0.00	3.46
97	98	1.133809	TGTGGGAGGTCAAGGGAAGG	61.134	60.000	0.00	0.00	0.00	3.46
98	99	1.541368	TGGGAGGTCAAGGGAAGGG	60.541	63.158	0.00	0.00	0.00	3.95
99	100	2.677848	GGAGGTCAAGGGAAGGGC	59.322	66.667	0.00	0.00	0.00	5.19
100	101	2.269241	GAGGTCAAGGGAAGGGCG	59.731	66.667	0.00	0.00	0.00	6.13
101	102	3.330720	AGGTCAAGGGAAGGGCGG	61.331	66.667	0.00	0.00	0.00	6.13
103	104	4.035102	GTCAAGGGAAGGGCGGCT	62.035	66.667	9.56	0.00	0.00	5.52
104	105	2.285069	TCAAGGGAAGGGCGGCTA	60.285	61.111	9.56	0.00	0.00	3.93
105	106	1.921346	TCAAGGGAAGGGCGGCTAA	60.921	57.895	9.56	0.00	0.00	3.09
106	107	1.749258	CAAGGGAAGGGCGGCTAAC	60.749	63.158	9.56	0.00	0.00	2.34
119	120	3.179265	CTAACGAGGCGGTGCGTG	61.179	66.667	0.00	0.00	41.06	5.34
120	121	4.728102	TAACGAGGCGGTGCGTGG	62.728	66.667	0.00	0.00	41.06	4.94
165	166	2.873797	GGGGGAAGCAAGCTGTTAG	58.126	57.895	0.00	0.00	0.00	2.34
166	167	0.681243	GGGGGAAGCAAGCTGTTAGG	60.681	60.000	0.00	0.00	0.00	2.69
167	168	0.681243	GGGGAAGCAAGCTGTTAGGG	60.681	60.000	0.00	0.00	0.00	3.53
168	169	1.315981	GGGAAGCAAGCTGTTAGGGC	61.316	60.000	0.00	0.00	0.00	5.19
169	170	0.322906	GGAAGCAAGCTGTTAGGGCT	60.323	55.000	0.00	0.00	42.31	5.19
170	171	1.065418	GGAAGCAAGCTGTTAGGGCTA	60.065	52.381	0.00	0.00	39.30	3.93
171	172	2.284190	GAAGCAAGCTGTTAGGGCTAG	58.716	52.381	0.00	0.00	39.30	3.42
172	173	0.543749	AGCAAGCTGTTAGGGCTAGG	59.456	55.000	0.00	0.00	39.30	3.02
173	174	0.253327	GCAAGCTGTTAGGGCTAGGT	59.747	55.000	0.00	0.00	39.30	3.08
174	175	1.744114	GCAAGCTGTTAGGGCTAGGTC	60.744	57.143	0.00	0.00	39.30	3.85
175	176	0.824759	AAGCTGTTAGGGCTAGGTCG	59.175	55.000	0.00	0.00	39.30	4.79
176	177	1.043673	AGCTGTTAGGGCTAGGTCGG	61.044	60.000	0.00	0.00	38.36	4.79
177	178	2.029307	GCTGTTAGGGCTAGGTCGGG	62.029	65.000	0.00	0.00	0.00	5.14
178	179	1.382146	TGTTAGGGCTAGGTCGGGG	60.382	63.158	0.00	0.00	0.00	5.73
179	180	2.138831	GTTAGGGCTAGGTCGGGGG	61.139	68.421	0.00	0.00	0.00	5.40
180	181	2.326974	TTAGGGCTAGGTCGGGGGA	61.327	63.158	0.00	0.00	0.00	4.81
181	182	2.308118	TTAGGGCTAGGTCGGGGGAG	62.308	65.000	0.00	0.00	0.00	4.30
182	183	4.153330	GGGCTAGGTCGGGGGAGA	62.153	72.222	0.00	0.00	0.00	3.71
183	184	2.522193	GGCTAGGTCGGGGGAGAG	60.522	72.222	0.00	0.00	0.00	3.20
184	185	2.522193	GCTAGGTCGGGGGAGAGG	60.522	72.222	0.00	0.00	0.00	3.69
185	186	2.198980	CTAGGTCGGGGGAGAGGG	59.801	72.222	0.00	0.00	0.00	4.30
186	187	3.436028	TAGGTCGGGGGAGAGGGG	61.436	72.222	0.00	0.00	0.00	4.79
214	215	0.460987	CGCGGGAGAAAGCAGAAGAT	60.461	55.000	0.00	0.00	0.00	2.40
219	220	2.617774	GGGAGAAAGCAGAAGATCATGC	59.382	50.000	8.96	8.96	42.87	4.06
223	224	2.630317	GCAGAAGATCATGCGGCG	59.370	61.111	0.51	0.51	31.87	6.46
253	254	1.811965	TGGCTGTTGGTTGATGATTCG	59.188	47.619	0.00	0.00	0.00	3.34
254	255	2.083774	GGCTGTTGGTTGATGATTCGA	58.916	47.619	0.00	0.00	0.00	3.71
260	261	2.564771	TGGTTGATGATTCGATGGCTC	58.435	47.619	0.00	0.00	0.00	4.70
261	262	1.876156	GGTTGATGATTCGATGGCTCC	59.124	52.381	0.00	0.00	0.00	4.70
262	263	1.528586	GTTGATGATTCGATGGCTCCG	59.471	52.381	0.00	0.00	0.00	4.63
263	264	1.039856	TGATGATTCGATGGCTCCGA	58.960	50.000	0.00	0.00	0.00	4.55
265	266	2.158971	TGATGATTCGATGGCTCCGAAA	60.159	45.455	15.73	4.33	46.97	3.46
266	267	2.394930	TGATTCGATGGCTCCGAAAA	57.605	45.000	15.73	7.29	46.97	2.29
267	268	2.705730	TGATTCGATGGCTCCGAAAAA	58.294	42.857	15.73	7.02	46.97	1.94
268	269	2.418628	TGATTCGATGGCTCCGAAAAAC	59.581	45.455	15.73	11.59	46.97	2.43
269	270	0.793861	TTCGATGGCTCCGAAAAACG	59.206	50.000	10.97	0.00	42.18	3.60
270	271	0.038067	TCGATGGCTCCGAAAAACGA	60.038	50.000	0.00	0.00	45.77	3.85
271	272	1.006832	CGATGGCTCCGAAAAACGAT	58.993	50.000	0.00	0.00	45.77	3.73
272	273	1.396996	CGATGGCTCCGAAAAACGATT	59.603	47.619	0.00	0.00	45.77	3.34
273	274	2.785679	GATGGCTCCGAAAAACGATTG	58.214	47.619	0.00	0.00	45.77	2.67
274	275	1.885560	TGGCTCCGAAAAACGATTGA	58.114	45.000	0.00	0.00	45.77	2.57
275	276	1.533731	TGGCTCCGAAAAACGATTGAC	59.466	47.619	0.00	0.00	45.77	3.18
276	277	1.533731	GGCTCCGAAAAACGATTGACA	59.466	47.619	0.00	0.00	45.77	3.58
277	278	2.571206	GCTCCGAAAAACGATTGACAC	58.429	47.619	0.00	0.00	45.77	3.67
320	321	1.883926	ACCGTATGGGCTGTCAAAAAC	59.116	47.619	5.82	0.00	40.62	2.43
330	331	4.222810	GGGCTGTCAAAAACCAATAATCCT	59.777	41.667	0.00	0.00	0.00	3.24
383	386	1.912043	AGCCAGGAAGTTATGTGCTCT	59.088	47.619	0.00	0.00	0.00	4.09
384	387	2.093235	AGCCAGGAAGTTATGTGCTCTC	60.093	50.000	0.00	0.00	0.00	3.20
385	388	2.355108	GCCAGGAAGTTATGTGCTCTCA	60.355	50.000	0.00	0.00	0.00	3.27
609	613	1.802365	CGTCTTCAAACTTAACCCCCG	59.198	52.381	0.00	0.00	0.00	5.73
640	645	4.308458	CTCCGTCCACCCGCACAA	62.308	66.667	0.00	0.00	0.00	3.33
647	652	4.954970	CACCCGCACAAGCACCCT	62.955	66.667	0.00	0.00	42.27	4.34
715	720	1.348036	GGCCATTAAGCGAGAGGGTAT	59.652	52.381	0.00	0.00	0.00	2.73
757	762	2.890371	GTCACCTACGGCGTGGAT	59.110	61.111	25.47	4.09	0.00	3.41
784	789	0.744281	ACCAGTTCCAAACCGCTTTG	59.256	50.000	0.00	0.00	37.16	2.77
797	802	1.310933	CGCTTTGGCTTGCATCCTCT	61.311	55.000	7.00	0.00	36.09	3.69
800	805	0.677731	TTTGGCTTGCATCCTCTCCG	60.678	55.000	7.00	0.00	0.00	4.63
835	840	4.470170	CGGACGGTCACGATCGCA	62.470	66.667	16.60	0.00	44.60	5.10
914	923	3.064324	CGCAGCCAAGGGGGAAAG	61.064	66.667	0.00	0.00	40.01	2.62
915	924	2.440599	GCAGCCAAGGGGGAAAGA	59.559	61.111	0.00	0.00	40.01	2.52
917	926	0.831711	GCAGCCAAGGGGGAAAGAAA	60.832	55.000	0.00	0.00	40.01	2.52
918	927	1.260544	CAGCCAAGGGGGAAAGAAAG	58.739	55.000	0.00	0.00	40.01	2.62
954	963	0.036875	ACCAGAAGAAAAGCTCGGGG	59.963	55.000	0.00	0.00	0.00	5.73
976	985	1.475403	TTCTTAGCGTGGGAGGAGAG	58.525	55.000	0.00	0.00	0.00	3.20
977	986	0.395862	TCTTAGCGTGGGAGGAGAGG	60.396	60.000	0.00	0.00	0.00	3.69
991	1000	3.844090	GAGGAGGAGAGCGTGGGC	61.844	72.222	0.00	0.00	40.37	5.36
1117	1133	1.737008	GACGACGACAAGAAGGGGC	60.737	63.158	0.00	0.00	0.00	5.80
1354	1380	8.022550	GTCCGAACTAGCTTTAGGATAAGATAC	58.977	40.741	3.65	0.00	0.00	2.24
1376	1402	2.423290	GAAGCGATAGGACCCTCGGC	62.423	65.000	14.06	7.83	35.48	5.54
1387	1413	2.367567	GGACCCTCGGCTATGTGATTTA	59.632	50.000	0.00	0.00	0.00	1.40
1404	1443	9.846248	ATGTGATTTATGTTCTAAAGCTTGTTC	57.154	29.630	0.00	0.00	0.00	3.18
1420	1459	3.672767	TGTTCGGAGGGTTTAGAGTTC	57.327	47.619	0.00	0.00	0.00	3.01
1421	1460	2.967201	TGTTCGGAGGGTTTAGAGTTCA	59.033	45.455	0.00	0.00	0.00	3.18
1425	1467	4.094476	TCGGAGGGTTTAGAGTTCATTCT	58.906	43.478	0.00	0.00	0.00	2.40
1434	1476	7.361286	GGGTTTAGAGTTCATTCTTAAGCAGTG	60.361	40.741	0.00	0.00	36.48	3.66
1441	1483	6.597614	GTTCATTCTTAAGCAGTGAACTGAG	58.402	40.000	24.55	2.91	46.59	3.35
1461	1503	3.882888	GAGGGTCTGTGTGTTGAATTTGA	59.117	43.478	0.00	0.00	0.00	2.69
1463	1505	3.004734	GGGTCTGTGTGTTGAATTTGAGG	59.995	47.826	0.00	0.00	0.00	3.86
1482	1524	1.070038	GAATGGCGACGGTTAAACGA	58.930	50.000	21.79	0.00	37.61	3.85
1488	1530	1.346378	CGACGGTTAAACGACGGCAT	61.346	55.000	25.98	0.19	45.27	4.40
1540	1583	1.153489	CAGACGATCTGGGGCAGTG	60.153	63.158	7.01	0.00	40.71	3.66
1562	1605	5.591877	GTGGAACAGATCTGGATTGCTTAAT	59.408	40.000	26.08	0.00	41.80	1.40
1563	1606	5.591472	TGGAACAGATCTGGATTGCTTAATG	59.409	40.000	26.08	0.00	34.19	1.90
1579	1623	6.734137	TGCTTAATGGCCTAATGTTTATTCG	58.266	36.000	3.32	0.00	0.00	3.34
1596	1640	0.608035	TCGGGTGTTTTGGCCTGATC	60.608	55.000	3.32	0.00	35.40	2.92
1600	1644	1.815003	GGTGTTTTGGCCTGATCTGAG	59.185	52.381	3.32	0.00	0.00	3.35
1601	1645	2.508526	GTGTTTTGGCCTGATCTGAGT	58.491	47.619	3.32	0.00	0.00	3.41
1606	1650	0.694771	TGGCCTGATCTGAGTGCTTT	59.305	50.000	3.32	0.00	0.00	3.51
1607	1651	1.908619	TGGCCTGATCTGAGTGCTTTA	59.091	47.619	3.32	0.00	0.00	1.85
1608	1652	2.284190	GGCCTGATCTGAGTGCTTTAC	58.716	52.381	0.00	0.00	0.00	2.01
1610	1654	3.338249	GCCTGATCTGAGTGCTTTACAA	58.662	45.455	0.38	0.00	0.00	2.41
1612	1656	4.397417	GCCTGATCTGAGTGCTTTACAATT	59.603	41.667	0.38	0.00	0.00	2.32
1613	1657	5.105997	GCCTGATCTGAGTGCTTTACAATTT	60.106	40.000	0.38	0.00	0.00	1.82
1614	1658	6.571150	GCCTGATCTGAGTGCTTTACAATTTT	60.571	38.462	0.38	0.00	0.00	1.82
1615	1659	7.362056	GCCTGATCTGAGTGCTTTACAATTTTA	60.362	37.037	0.38	0.00	0.00	1.52
1616	1660	8.680903	CCTGATCTGAGTGCTTTACAATTTTAT	58.319	33.333	0.38	0.00	0.00	1.40
1739	1783	2.238084	TGGAGTACCATCTGCTCACT	57.762	50.000	0.00	0.00	41.77	3.41
1787	1831	2.354203	CCTGGCAACACTCTTCCTCTAC	60.354	54.545	0.00	0.00	46.17	2.59
1834	1878	2.646798	AGTGAGCTTCTCCTCCCAAATT	59.353	45.455	0.00	0.00	0.00	1.82
1844	1888	7.493645	GCTTCTCCTCCCAAATTAAATTGATTG	59.506	37.037	4.78	0.00	31.84	2.67
1898	1942	1.071471	CCTGCAGACACCGTCCTTT	59.929	57.895	17.39	0.00	32.18	3.11
1959	2003	8.918202	TCCATAATCCTTGGTGTTTATGATAC	57.082	34.615	14.80	0.00	35.17	2.24
1974	2018	3.788116	TGATACTTTAGGTCTCCCCCA	57.212	47.619	0.00	0.00	0.00	4.96
2204	2249	4.394729	TGTTCTTTGTATTCCCAGGTGAC	58.605	43.478	0.00	0.00	0.00	3.67
2308	2353	2.423185	TGCAAGCCTATTTTCATCACCG	59.577	45.455	0.00	0.00	0.00	4.94
2326	2371	3.675225	CACCGCTCACTAAATATCGATGG	59.325	47.826	8.54	0.00	0.00	3.51
2350	2395	8.581578	TGGAAGTTATTAATGGACACCTTTTTC	58.418	33.333	0.00	0.00	0.00	2.29
2358	2404	4.625972	TGGACACCTTTTTCTTTTCGAC	57.374	40.909	0.00	0.00	0.00	4.20
2559	2617	2.285602	CGCGTATTGCCATCTGTGTTAC	60.286	50.000	0.00	0.00	42.08	2.50
2560	2618	2.031683	GCGTATTGCCATCTGTGTTACC	59.968	50.000	0.00	0.00	37.76	2.85
2668	2729	2.361757	TGGTGTGCTGATCTTTTTGTGG	59.638	45.455	0.00	0.00	0.00	4.17
2672	2733	3.953612	TGTGCTGATCTTTTTGTGGAGTT	59.046	39.130	0.00	0.00	0.00	3.01
2673	2734	4.402155	TGTGCTGATCTTTTTGTGGAGTTT	59.598	37.500	0.00	0.00	0.00	2.66
2676	2744	4.787598	CTGATCTTTTTGTGGAGTTTCCG	58.212	43.478	0.00	0.00	40.17	4.30
2786	2854	3.507411	ACCTGTTCTAGTGCCTAGTGAA	58.493	45.455	8.51	0.00	35.72	3.18
2787	2855	3.258622	ACCTGTTCTAGTGCCTAGTGAAC	59.741	47.826	8.51	0.00	35.72	3.18
2789	2857	4.021016	CCTGTTCTAGTGCCTAGTGAACTT	60.021	45.833	8.51	0.00	35.72	2.66
2790	2858	5.511545	CCTGTTCTAGTGCCTAGTGAACTTT	60.512	44.000	8.51	0.00	35.72	2.66
2791	2859	5.297547	TGTTCTAGTGCCTAGTGAACTTTG	58.702	41.667	8.51	0.00	35.72	2.77
2792	2860	5.163343	TGTTCTAGTGCCTAGTGAACTTTGT	60.163	40.000	8.51	0.00	35.72	2.83
2793	2861	4.883083	TCTAGTGCCTAGTGAACTTTGTG	58.117	43.478	8.51	0.00	35.72	3.33
2794	2862	3.838244	AGTGCCTAGTGAACTTTGTGA	57.162	42.857	0.00	0.00	0.00	3.58
2795	2863	4.357918	AGTGCCTAGTGAACTTTGTGAT	57.642	40.909	0.00	0.00	0.00	3.06
2796	2864	5.483685	AGTGCCTAGTGAACTTTGTGATA	57.516	39.130	0.00	0.00	0.00	2.15
2827	2895	7.676572	GCGTAGTGATTTATCCAGTTTTCTTCC	60.677	40.741	0.00	0.00	0.00	3.46
3033	3107	8.943594	TTTCACCAAAGTATTTATGTAAGGGT	57.056	30.769	0.00	0.00	35.03	4.34
3034	3108	8.943594	TTCACCAAAGTATTTATGTAAGGGTT	57.056	30.769	0.00	0.00	35.03	4.11
3035	3109	8.343168	TCACCAAAGTATTTATGTAAGGGTTG	57.657	34.615	0.00	0.00	35.03	3.77
3036	3110	7.033185	CACCAAAGTATTTATGTAAGGGTTGC	58.967	38.462	0.00	0.00	35.03	4.17
3037	3111	6.722129	ACCAAAGTATTTATGTAAGGGTTGCA	59.278	34.615	0.00	0.00	35.03	4.08
3038	3112	7.233757	ACCAAAGTATTTATGTAAGGGTTGCAA	59.766	33.333	0.00	0.00	35.03	4.08
3039	3113	8.091449	CCAAAGTATTTATGTAAGGGTTGCAAA	58.909	33.333	0.00	0.00	35.03	3.68
3040	3114	8.921670	CAAAGTATTTATGTAAGGGTTGCAAAC	58.078	33.333	5.73	5.73	41.32	2.93
3041	3115	8.643324	AAAGTATTTATGTAAGGGTTGCAAACA	58.357	29.630	17.88	10.16	43.33	2.83
3050	3124	4.695014	TTGCAAACAGAGGGGCAA	57.305	50.000	0.00	0.00	43.32	4.52
3051	3125	2.428834	TTGCAAACAGAGGGGCAAG	58.571	52.632	0.00	0.00	40.94	4.01
3052	3126	0.106268	TTGCAAACAGAGGGGCAAGA	60.106	50.000	0.00	0.00	40.94	3.02
3053	3127	0.823356	TGCAAACAGAGGGGCAAGAC	60.823	55.000	0.00	0.00	32.54	3.01
3054	3128	1.527433	GCAAACAGAGGGGCAAGACC	61.527	60.000	0.00	0.00	37.93	3.85
3055	3129	1.073199	AAACAGAGGGGCAAGACCG	59.927	57.895	0.00	0.00	40.62	4.79
3056	3130	1.705997	AAACAGAGGGGCAAGACCGT	61.706	55.000	0.00	0.00	40.62	4.83
3057	3131	1.705997	AACAGAGGGGCAAGACCGTT	61.706	55.000	0.00	0.00	40.62	4.44
3058	3132	1.073199	CAGAGGGGCAAGACCGTTT	59.927	57.895	0.00	0.00	40.62	3.60
3059	3133	0.323629	CAGAGGGGCAAGACCGTTTA	59.676	55.000	0.00	0.00	40.62	2.01
3060	3134	0.613777	AGAGGGGCAAGACCGTTTAG	59.386	55.000	0.00	0.00	40.62	1.85
3061	3135	0.611714	GAGGGGCAAGACCGTTTAGA	59.388	55.000	0.00	0.00	40.62	2.10
3062	3136	1.209747	GAGGGGCAAGACCGTTTAGAT	59.790	52.381	0.00	0.00	40.62	1.98
3063	3137	1.065418	AGGGGCAAGACCGTTTAGATG	60.065	52.381	0.00	0.00	40.62	2.90
3064	3138	1.339727	GGGGCAAGACCGTTTAGATGT	60.340	52.381	0.00	0.00	40.62	3.06
3065	3139	2.433436	GGGCAAGACCGTTTAGATGTT	58.567	47.619	0.00	0.00	40.62	2.71
3066	3140	3.602483	GGGCAAGACCGTTTAGATGTTA	58.398	45.455	0.00	0.00	40.62	2.41
3067	3141	3.621715	GGGCAAGACCGTTTAGATGTTAG	59.378	47.826	0.00	0.00	40.62	2.34
3068	3142	4.251268	GGCAAGACCGTTTAGATGTTAGT	58.749	43.478	0.00	0.00	0.00	2.24
3069	3143	4.092968	GGCAAGACCGTTTAGATGTTAGTG	59.907	45.833	0.00	0.00	0.00	2.74
3070	3144	4.927425	GCAAGACCGTTTAGATGTTAGTGA	59.073	41.667	0.00	0.00	0.00	3.41
3071	3145	5.581085	GCAAGACCGTTTAGATGTTAGTGAT	59.419	40.000	0.00	0.00	0.00	3.06
3072	3146	6.092259	GCAAGACCGTTTAGATGTTAGTGATT	59.908	38.462	0.00	0.00	0.00	2.57
3073	3147	7.360946	GCAAGACCGTTTAGATGTTAGTGATTT	60.361	37.037	0.00	0.00	0.00	2.17
3074	3148	9.146984	CAAGACCGTTTAGATGTTAGTGATTTA	57.853	33.333	0.00	0.00	0.00	1.40
3075	3149	9.886132	AAGACCGTTTAGATGTTAGTGATTTAT	57.114	29.630	0.00	0.00	0.00	1.40
3092	3166	9.847706	AGTGATTTATACACGATCTTATAGCAG	57.152	33.333	0.00	0.00	42.25	4.24
3093	3167	9.627395	GTGATTTATACACGATCTTATAGCAGT	57.373	33.333	0.00	0.00	0.00	4.40
3102	3176	9.601217	ACACGATCTTATAGCAGTATTTTCTTT	57.399	29.630	0.00	0.00	0.00	2.52
3126	3200	9.932207	TTTACGAGTATTTATTTTGAGAGACCA	57.068	29.630	0.00	0.00	0.00	4.02
3129	3203	9.449719	ACGAGTATTTATTTTGAGAGACCATTT	57.550	29.630	0.00	0.00	0.00	2.32
3135	3209	8.934023	TTTATTTTGAGAGACCATTTACAGGT	57.066	30.769	0.00	0.00	43.46	4.00
3139	3213	7.921786	TTTGAGAGACCATTTACAGGTATTG	57.078	36.000	0.00	0.00	40.09	1.90
3140	3214	6.867519	TGAGAGACCATTTACAGGTATTGA	57.132	37.500	0.00	0.00	40.09	2.57
3141	3215	7.437713	TGAGAGACCATTTACAGGTATTGAT	57.562	36.000	0.00	0.00	40.09	2.57
3142	3216	8.547481	TGAGAGACCATTTACAGGTATTGATA	57.453	34.615	0.00	0.00	40.09	2.15
3143	3217	8.642432	TGAGAGACCATTTACAGGTATTGATAG	58.358	37.037	0.00	0.00	40.09	2.08
3144	3218	8.783660	AGAGACCATTTACAGGTATTGATAGA	57.216	34.615	0.00	0.00	40.09	1.98
3145	3219	9.213777	AGAGACCATTTACAGGTATTGATAGAA	57.786	33.333	0.00	0.00	40.09	2.10
3146	3220	9.262358	GAGACCATTTACAGGTATTGATAGAAC	57.738	37.037	0.00	0.00	40.09	3.01
3147	3221	8.993424	AGACCATTTACAGGTATTGATAGAACT	58.007	33.333	0.00	0.00	40.09	3.01
3148	3222	9.614792	GACCATTTACAGGTATTGATAGAACTT	57.385	33.333	0.00	0.00	40.09	2.66
3149	3223	9.614792	ACCATTTACAGGTATTGATAGAACTTC	57.385	33.333	0.00	0.00	37.67	3.01
3150	3224	9.613428	CCATTTACAGGTATTGATAGAACTTCA	57.387	33.333	0.00	0.00	0.00	3.02
3153	3227	9.832445	TTTACAGGTATTGATAGAACTTCATCC	57.168	33.333	0.00	0.00	0.00	3.51
3154	3228	6.516718	ACAGGTATTGATAGAACTTCATCCG	58.483	40.000	0.00	0.00	0.00	4.18
3155	3229	5.928839	CAGGTATTGATAGAACTTCATCCGG	59.071	44.000	0.00	0.00	0.00	5.14
3156	3230	5.602978	AGGTATTGATAGAACTTCATCCGGT	59.397	40.000	0.00	0.00	0.00	5.28
3157	3231	6.099845	AGGTATTGATAGAACTTCATCCGGTT	59.900	38.462	0.00	0.00	0.00	4.44
3158	3232	7.289317	AGGTATTGATAGAACTTCATCCGGTTA	59.711	37.037	0.00	0.00	0.00	2.85
3159	3233	8.095169	GGTATTGATAGAACTTCATCCGGTTAT	58.905	37.037	0.00	0.00	0.00	1.89
3162	3236	9.712305	ATTGATAGAACTTCATCCGGTTATAAG	57.288	33.333	0.00	4.24	0.00	1.73
3163	3237	8.473358	TGATAGAACTTCATCCGGTTATAAGA	57.527	34.615	0.00	0.00	0.00	2.10
3164	3238	8.920174	TGATAGAACTTCATCCGGTTATAAGAA	58.080	33.333	0.00	0.00	0.00	2.52
3165	3239	9.760077	GATAGAACTTCATCCGGTTATAAGAAA	57.240	33.333	0.00	0.00	0.00	2.52
3243	3326	2.532854	ATGCGACCTCCCTAGCATT	58.467	52.632	0.00	0.00	46.75	3.56
3244	3327	0.107456	ATGCGACCTCCCTAGCATTG	59.893	55.000	0.00	0.00	46.75	2.82
3260	3343	5.567138	AGCATTGTAACATTGTAAGAGCC	57.433	39.130	0.00	0.00	0.00	4.70
3263	3346	6.540189	AGCATTGTAACATTGTAAGAGCCTAG	59.460	38.462	0.00	0.00	0.00	3.02
3268	3351	8.130671	TGTAACATTGTAAGAGCCTAGTAACT	57.869	34.615	0.00	0.00	0.00	2.24
3278	3361	2.770232	AGCCTAGTAACTGCCGGTTTAT	59.230	45.455	1.90	0.00	39.17	1.40
3283	3366	2.011947	GTAACTGCCGGTTTATGGGAC	58.988	52.381	1.90	0.00	39.17	4.46
3284	3367	0.675522	AACTGCCGGTTTATGGGACG	60.676	55.000	1.90	0.00	33.90	4.79
3285	3368	1.219664	CTGCCGGTTTATGGGACGA	59.780	57.895	1.90	0.00	0.00	4.20
3286	3369	0.179056	CTGCCGGTTTATGGGACGAT	60.179	55.000	1.90	0.00	0.00	3.73
3287	3370	0.253610	TGCCGGTTTATGGGACGATT	59.746	50.000	1.90	0.00	0.00	3.34
3288	3371	1.340211	TGCCGGTTTATGGGACGATTT	60.340	47.619	1.90	0.00	0.00	2.17
3289	3372	1.746787	GCCGGTTTATGGGACGATTTT	59.253	47.619	1.90	0.00	0.00	1.82
3290	3373	2.223409	GCCGGTTTATGGGACGATTTTC	60.223	50.000	1.90	0.00	0.00	2.29
3291	3374	2.031191	CCGGTTTATGGGACGATTTTCG	59.969	50.000	0.00	0.00	46.93	3.46
3292	3375	2.931325	CGGTTTATGGGACGATTTTCGA	59.069	45.455	3.62	0.00	43.74	3.71
3293	3376	3.371591	CGGTTTATGGGACGATTTTCGAA	59.628	43.478	3.62	0.00	43.74	3.71
3294	3377	4.034742	CGGTTTATGGGACGATTTTCGAAT	59.965	41.667	0.00	0.00	43.74	3.34
3295	3378	5.234757	CGGTTTATGGGACGATTTTCGAATA	59.765	40.000	0.00	0.00	43.74	1.75
3296	3379	6.563381	CGGTTTATGGGACGATTTTCGAATAG	60.563	42.308	0.00	0.00	43.74	1.73
3297	3380	6.480981	GGTTTATGGGACGATTTTCGAATAGA	59.519	38.462	0.00	0.00	43.74	1.98
3298	3381	7.172703	GGTTTATGGGACGATTTTCGAATAGAT	59.827	37.037	0.00	0.00	43.74	1.98
3299	3382	7.884816	TTATGGGACGATTTTCGAATAGATC	57.115	36.000	0.00	2.83	43.74	2.75
3300	3383	4.628074	TGGGACGATTTTCGAATAGATCC	58.372	43.478	0.00	3.16	43.74	3.36
3301	3384	3.995048	GGGACGATTTTCGAATAGATCCC	59.005	47.826	15.28	15.28	43.74	3.85
3302	3385	4.502604	GGGACGATTTTCGAATAGATCCCA	60.503	45.833	21.32	0.00	43.74	4.37
3303	3386	5.238583	GGACGATTTTCGAATAGATCCCAT	58.761	41.667	0.00	0.00	43.74	4.00
3304	3387	5.348997	GGACGATTTTCGAATAGATCCCATC	59.651	44.000	0.00	1.42	43.74	3.51
3305	3388	5.238583	ACGATTTTCGAATAGATCCCATCC	58.761	41.667	0.00	0.00	43.74	3.51
3306	3389	5.012148	ACGATTTTCGAATAGATCCCATCCT	59.988	40.000	0.00	0.00	43.74	3.24
3307	3390	5.349817	CGATTTTCGAATAGATCCCATCCTG	59.650	44.000	0.00	0.00	43.74	3.86
3308	3391	5.630415	TTTTCGAATAGATCCCATCCTGT	57.370	39.130	0.00	0.00	0.00	4.00
3309	3392	6.740944	TTTTCGAATAGATCCCATCCTGTA	57.259	37.500	0.00	0.00	0.00	2.74
3310	3393	6.935240	TTTCGAATAGATCCCATCCTGTAT	57.065	37.500	0.00	0.00	0.00	2.29
3311	3394	6.935240	TTCGAATAGATCCCATCCTGTATT	57.065	37.500	0.00	0.00	0.00	1.89
3312	3395	6.935240	TCGAATAGATCCCATCCTGTATTT	57.065	37.500	0.00	0.00	0.00	1.40
3313	3396	7.316393	TCGAATAGATCCCATCCTGTATTTT	57.684	36.000	0.00	0.00	0.00	1.82
3314	3397	7.745717	TCGAATAGATCCCATCCTGTATTTTT	58.254	34.615	0.00	0.00	0.00	1.94
3339	3422	2.380064	GGGGGAACATGCATATTCCA	57.620	50.000	32.21	0.00	45.37	3.53
3340	3423	2.242043	GGGGGAACATGCATATTCCAG	58.758	52.381	32.21	8.39	45.37	3.86
3341	3424	1.615392	GGGGAACATGCATATTCCAGC	59.385	52.381	32.21	18.83	45.37	4.85
3342	3425	2.590821	GGGAACATGCATATTCCAGCT	58.409	47.619	32.21	0.00	45.37	4.24
3343	3426	2.295349	GGGAACATGCATATTCCAGCTG	59.705	50.000	32.21	6.78	45.37	4.24
3344	3427	2.954318	GGAACATGCATATTCCAGCTGT	59.046	45.455	28.09	4.92	43.40	4.40
3345	3428	3.382546	GGAACATGCATATTCCAGCTGTT	59.617	43.478	28.09	13.38	43.40	3.16
3346	3429	4.142093	GGAACATGCATATTCCAGCTGTTT	60.142	41.667	28.09	0.00	43.40	2.83
3347	3430	4.644103	ACATGCATATTCCAGCTGTTTC	57.356	40.909	13.81	0.00	0.00	2.78
3348	3431	3.382546	ACATGCATATTCCAGCTGTTTCC	59.617	43.478	13.81	0.00	0.00	3.13
3349	3432	3.370840	TGCATATTCCAGCTGTTTCCT	57.629	42.857	13.81	0.00	0.00	3.36
3350	3433	3.282021	TGCATATTCCAGCTGTTTCCTC	58.718	45.455	13.81	0.00	0.00	3.71
3351	3434	3.054139	TGCATATTCCAGCTGTTTCCTCT	60.054	43.478	13.81	0.00	0.00	3.69
3352	3435	3.314635	GCATATTCCAGCTGTTTCCTCTG	59.685	47.826	13.81	2.57	0.00	3.35
3353	3436	4.521146	CATATTCCAGCTGTTTCCTCTGT	58.479	43.478	13.81	0.00	0.00	3.41
3354	3437	5.674525	CATATTCCAGCTGTTTCCTCTGTA	58.325	41.667	13.81	0.00	0.00	2.74
3355	3438	3.402628	TTCCAGCTGTTTCCTCTGTAC	57.597	47.619	13.81	0.00	0.00	2.90
3356	3439	1.623811	TCCAGCTGTTTCCTCTGTACC	59.376	52.381	13.81	0.00	0.00	3.34
3357	3440	1.625818	CCAGCTGTTTCCTCTGTACCT	59.374	52.381	13.81	0.00	0.00	3.08
3358	3441	2.832129	CCAGCTGTTTCCTCTGTACCTA	59.168	50.000	13.81	0.00	0.00	3.08
3359	3442	3.368531	CCAGCTGTTTCCTCTGTACCTAC	60.369	52.174	13.81	0.00	0.00	3.18
3360	3443	2.492484	AGCTGTTTCCTCTGTACCTACG	59.508	50.000	0.00	0.00	0.00	3.51
3361	3444	2.416972	GCTGTTTCCTCTGTACCTACGG	60.417	54.545	0.00	0.00	0.00	4.02
3362	3445	2.165845	CTGTTTCCTCTGTACCTACGGG	59.834	54.545	0.00	0.00	38.88	5.28
3363	3446	2.225091	TGTTTCCTCTGTACCTACGGGA	60.225	50.000	0.00	0.00	36.25	5.14
3364	3447	3.029570	GTTTCCTCTGTACCTACGGGAT	58.970	50.000	0.00	0.00	36.25	3.85
3365	3448	3.393426	TTCCTCTGTACCTACGGGATT	57.607	47.619	0.00	0.00	36.25	3.01
3366	3449	3.393426	TCCTCTGTACCTACGGGATTT	57.607	47.619	0.00	0.00	36.25	2.17
3367	3450	3.028850	TCCTCTGTACCTACGGGATTTG	58.971	50.000	0.00	0.00	36.25	2.32
3368	3451	2.102588	CCTCTGTACCTACGGGATTTGG	59.897	54.545	0.00	0.00	36.25	3.28
3369	3452	2.102588	CTCTGTACCTACGGGATTTGGG	59.897	54.545	0.00	0.00	36.25	4.12
3370	3453	1.140252	CTGTACCTACGGGATTTGGGG	59.860	57.143	0.00	0.00	36.25	4.96
3371	3454	0.179037	GTACCTACGGGATTTGGGGC	60.179	60.000	0.00	0.00	36.25	5.80
3372	3455	0.620990	TACCTACGGGATTTGGGGCA	60.621	55.000	0.00	0.00	36.25	5.36
3373	3456	1.304952	CCTACGGGATTTGGGGCAA	59.695	57.895	0.00	0.00	33.58	4.52
3374	3457	0.106217	CCTACGGGATTTGGGGCAAT	60.106	55.000	0.00	0.00	33.58	3.56
3375	3458	1.687996	CCTACGGGATTTGGGGCAATT	60.688	52.381	0.00	0.00	33.58	2.32
3376	3459	1.681264	CTACGGGATTTGGGGCAATTC	59.319	52.381	0.00	0.00	0.00	2.17
3377	3460	0.041090	ACGGGATTTGGGGCAATTCT	59.959	50.000	0.00	0.00	0.00	2.40
3378	3461	1.194218	CGGGATTTGGGGCAATTCTT	58.806	50.000	0.00	0.00	0.00	2.52
3379	3462	1.134729	CGGGATTTGGGGCAATTCTTG	60.135	52.381	0.00	0.00	0.00	3.02
3392	3475	4.524316	CAATTCTTGCAGGGACATGAAA	57.476	40.909	0.00	0.00	37.29	2.69
3393	3476	4.885413	CAATTCTTGCAGGGACATGAAAA	58.115	39.130	0.00	0.00	37.29	2.29
3394	3477	4.796038	ATTCTTGCAGGGACATGAAAAG	57.204	40.909	0.00	0.00	37.29	2.27
3395	3478	3.228188	TCTTGCAGGGACATGAAAAGT	57.772	42.857	0.00	0.00	0.00	2.66
3396	3479	4.365514	TCTTGCAGGGACATGAAAAGTA	57.634	40.909	0.00	0.00	0.00	2.24
3397	3480	4.724399	TCTTGCAGGGACATGAAAAGTAA	58.276	39.130	0.00	0.00	0.00	2.24
3398	3481	4.761739	TCTTGCAGGGACATGAAAAGTAAG	59.238	41.667	0.00	0.94	0.00	2.34
3399	3482	4.365514	TGCAGGGACATGAAAAGTAAGA	57.634	40.909	0.00	0.00	0.00	2.10
3400	3483	4.724399	TGCAGGGACATGAAAAGTAAGAA	58.276	39.130	0.00	0.00	0.00	2.52
3401	3484	5.136828	TGCAGGGACATGAAAAGTAAGAAA	58.863	37.500	0.00	0.00	0.00	2.52
3402	3485	5.774690	TGCAGGGACATGAAAAGTAAGAAAT	59.225	36.000	0.00	0.00	0.00	2.17
3403	3486	6.095377	GCAGGGACATGAAAAGTAAGAAATG	58.905	40.000	0.00	0.00	0.00	2.32
3404	3487	6.624423	CAGGGACATGAAAAGTAAGAAATGG	58.376	40.000	0.00	0.00	0.00	3.16
3405	3488	6.209391	CAGGGACATGAAAAGTAAGAAATGGT	59.791	38.462	0.00	0.00	0.00	3.55
3406	3489	6.782494	AGGGACATGAAAAGTAAGAAATGGTT	59.218	34.615	0.00	0.00	0.00	3.67
3407	3490	6.868339	GGGACATGAAAAGTAAGAAATGGTTG	59.132	38.462	0.00	0.00	0.00	3.77
3408	3491	6.868339	GGACATGAAAAGTAAGAAATGGTTGG	59.132	38.462	0.00	0.00	0.00	3.77
3409	3492	6.223120	ACATGAAAAGTAAGAAATGGTTGGC	58.777	36.000	0.00	0.00	0.00	4.52
3410	3493	4.865776	TGAAAAGTAAGAAATGGTTGGCG	58.134	39.130	0.00	0.00	0.00	5.69
3411	3494	3.934457	AAAGTAAGAAATGGTTGGCGG	57.066	42.857	0.00	0.00	0.00	6.13
3412	3495	1.834188	AGTAAGAAATGGTTGGCGGG	58.166	50.000	0.00	0.00	0.00	6.13
3413	3496	1.353022	AGTAAGAAATGGTTGGCGGGA	59.647	47.619	0.00	0.00	0.00	5.14
3414	3497	1.743394	GTAAGAAATGGTTGGCGGGAG	59.257	52.381	0.00	0.00	0.00	4.30
3415	3498	0.404040	AAGAAATGGTTGGCGGGAGA	59.596	50.000	0.00	0.00	0.00	3.71
3416	3499	0.035056	AGAAATGGTTGGCGGGAGAG	60.035	55.000	0.00	0.00	0.00	3.20
3417	3500	0.035439	GAAATGGTTGGCGGGAGAGA	60.035	55.000	0.00	0.00	0.00	3.10
3418	3501	0.404040	AAATGGTTGGCGGGAGAGAA	59.596	50.000	0.00	0.00	0.00	2.87
3419	3502	0.322546	AATGGTTGGCGGGAGAGAAC	60.323	55.000	0.00	0.00	0.00	3.01
3420	3503	1.201429	ATGGTTGGCGGGAGAGAACT	61.201	55.000	0.00	0.00	0.00	3.01
3421	3504	1.375326	GGTTGGCGGGAGAGAACTT	59.625	57.895	0.00	0.00	0.00	2.66
3422	3505	0.250770	GGTTGGCGGGAGAGAACTTT	60.251	55.000	0.00	0.00	0.00	2.66
3423	3506	1.605753	GTTGGCGGGAGAGAACTTTT	58.394	50.000	0.00	0.00	0.00	2.27
3424	3507	2.551504	GGTTGGCGGGAGAGAACTTTTA	60.552	50.000	0.00	0.00	0.00	1.52
3425	3508	2.742589	GTTGGCGGGAGAGAACTTTTAG	59.257	50.000	0.00	0.00	0.00	1.85
3426	3509	1.278127	TGGCGGGAGAGAACTTTTAGG	59.722	52.381	0.00	0.00	0.00	2.69
3427	3510	1.407025	GGCGGGAGAGAACTTTTAGGG	60.407	57.143	0.00	0.00	0.00	3.53
3428	3511	2.012554	GCGGGAGAGAACTTTTAGGGC	61.013	57.143	0.00	0.00	0.00	5.19
3429	3512	1.407025	CGGGAGAGAACTTTTAGGGCC	60.407	57.143	0.00	0.00	0.00	5.80
3430	3513	1.916874	GGGAGAGAACTTTTAGGGCCT	59.083	52.381	12.58	12.58	0.00	5.19
3431	3514	2.356227	GGGAGAGAACTTTTAGGGCCTG	60.356	54.545	18.53	0.69	0.00	4.85
3432	3515	2.360844	GAGAGAACTTTTAGGGCCTGC	58.639	52.381	18.53	0.00	0.00	4.85
3433	3516	1.988846	AGAGAACTTTTAGGGCCTGCT	59.011	47.619	18.53	1.52	0.00	4.24
3434	3517	2.376855	AGAGAACTTTTAGGGCCTGCTT	59.623	45.455	18.53	0.00	0.00	3.91
3435	3518	2.489722	GAGAACTTTTAGGGCCTGCTTG	59.510	50.000	18.53	6.60	0.00	4.01
3436	3519	1.546029	GAACTTTTAGGGCCTGCTTGG	59.454	52.381	18.53	5.08	39.35	3.61
3437	3520	0.482887	ACTTTTAGGGCCTGCTTGGT	59.517	50.000	18.53	5.75	38.35	3.67
3438	3521	1.133167	ACTTTTAGGGCCTGCTTGGTT	60.133	47.619	18.53	0.00	38.35	3.67
3439	3522	1.273327	CTTTTAGGGCCTGCTTGGTTG	59.727	52.381	18.53	0.00	38.35	3.77
3440	3523	1.184970	TTTAGGGCCTGCTTGGTTGC	61.185	55.000	18.53	0.00	38.35	4.17
3441	3524	3.583882	TAGGGCCTGCTTGGTTGCC	62.584	63.158	18.53	0.00	43.26	4.52
3446	3529	3.376078	CTGCTTGGTTGCCCGCAT	61.376	61.111	0.00	0.00	30.79	4.73
3447	3530	3.636313	CTGCTTGGTTGCCCGCATG	62.636	63.158	0.00	0.00	30.79	4.06
3448	3531	3.683937	GCTTGGTTGCCCGCATGT	61.684	61.111	0.00	0.00	0.00	3.21
3449	3532	2.339556	GCTTGGTTGCCCGCATGTA	61.340	57.895	0.00	0.00	0.00	2.29
3450	3533	1.802636	CTTGGTTGCCCGCATGTAG	59.197	57.895	0.00	0.00	0.00	2.74
3451	3534	2.270297	CTTGGTTGCCCGCATGTAGC	62.270	60.000	0.00	0.00	40.87	3.58
3452	3535	3.518068	GGTTGCCCGCATGTAGCC	61.518	66.667	0.00	0.00	41.38	3.93
3453	3536	3.518068	GTTGCCCGCATGTAGCCC	61.518	66.667	0.00	0.00	41.38	5.19
3454	3537	4.040426	TTGCCCGCATGTAGCCCA	62.040	61.111	0.00	0.00	41.38	5.36
3455	3538	3.575703	TTGCCCGCATGTAGCCCAA	62.576	57.895	0.00	0.00	41.38	4.12
3456	3539	3.518068	GCCCGCATGTAGCCCAAC	61.518	66.667	0.00	0.00	41.38	3.77
3457	3540	2.828549	CCCGCATGTAGCCCAACC	60.829	66.667	0.00	0.00	41.38	3.77
3458	3541	2.045438	CCGCATGTAGCCCAACCA	60.045	61.111	0.00	0.00	41.38	3.67
3459	3542	2.114670	CCGCATGTAGCCCAACCAG	61.115	63.158	0.00	0.00	41.38	4.00
3460	3543	2.114670	CGCATGTAGCCCAACCAGG	61.115	63.158	0.00	0.00	41.38	4.45
3491	3574	3.989787	GGCCCGTTTGGTTGCCTG	61.990	66.667	0.00	0.00	38.98	4.85
3492	3575	3.989787	GCCCGTTTGGTTGCCTGG	61.990	66.667	0.00	0.00	36.04	4.45
3493	3576	3.302344	CCCGTTTGGTTGCCTGGG	61.302	66.667	0.00	0.00	0.00	4.45
3494	3577	3.989787	CCGTTTGGTTGCCTGGGC	61.990	66.667	4.43	4.43	42.35	5.36
3495	3578	2.912025	CGTTTGGTTGCCTGGGCT	60.912	61.111	13.05	0.00	42.51	5.19
3496	3579	2.736531	GTTTGGTTGCCTGGGCTG	59.263	61.111	13.05	0.00	42.51	4.85
3497	3580	3.233231	TTTGGTTGCCTGGGCTGC	61.233	61.111	13.05	5.46	42.51	5.25
3498	3581	4.536526	TTGGTTGCCTGGGCTGCA	62.537	61.111	13.05	0.00	42.51	4.41
3499	3582	3.831727	TTGGTTGCCTGGGCTGCAT	62.832	57.895	13.05	0.00	42.51	3.96
3500	3583	3.766691	GGTTGCCTGGGCTGCATG	61.767	66.667	13.05	0.00	42.51	4.06
3501	3584	4.446413	GTTGCCTGGGCTGCATGC	62.446	66.667	11.82	11.82	42.51	4.06
3506	3589	3.376078	CTGGGCTGCATGCGGTTT	61.376	61.111	26.79	0.00	44.05	3.27
3507	3590	3.346631	CTGGGCTGCATGCGGTTTC	62.347	63.158	26.79	16.49	44.05	2.78
3508	3591	3.064324	GGGCTGCATGCGGTTTCT	61.064	61.111	26.79	0.00	44.05	2.52
3509	3592	2.180017	GGCTGCATGCGGTTTCTG	59.820	61.111	26.79	5.56	44.05	3.02
3510	3593	2.180017	GCTGCATGCGGTTTCTGG	59.820	61.111	26.79	4.24	0.00	3.86
3511	3594	2.180017	CTGCATGCGGTTTCTGGC	59.820	61.111	18.84	0.00	0.00	4.85
3512	3595	3.346631	CTGCATGCGGTTTCTGGCC	62.347	63.158	18.84	0.00	0.00	5.36
3513	3596	4.133796	GCATGCGGTTTCTGGCCC	62.134	66.667	0.00	0.00	0.00	5.80
3514	3597	3.814268	CATGCGGTTTCTGGCCCG	61.814	66.667	0.00	0.00	46.90	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	0.389948	AACTCTGATGACGAACCCGC	60.390	55.000	0.00	0.00	39.95	6.13
1	2	1.350193	CAACTCTGATGACGAACCCG	58.650	55.000	0.00	0.00	42.50	5.28
2	3	1.079503	GCAACTCTGATGACGAACCC	58.920	55.000	0.00	0.00	0.00	4.11
3	4	1.728971	CAGCAACTCTGATGACGAACC	59.271	52.381	0.00	0.00	45.72	3.62
4	5	1.127582	GCAGCAACTCTGATGACGAAC	59.872	52.381	0.00	0.00	45.72	3.95
5	6	1.270252	TGCAGCAACTCTGATGACGAA	60.270	47.619	0.00	0.00	45.72	3.85
6	7	0.318120	TGCAGCAACTCTGATGACGA	59.682	50.000	0.00	0.00	45.72	4.20
7	8	1.150827	TTGCAGCAACTCTGATGACG	58.849	50.000	2.83	0.00	45.72	4.35
8	9	3.844577	ATTTGCAGCAACTCTGATGAC	57.155	42.857	7.54	0.00	45.72	3.06
9	10	4.397103	CCTAATTTGCAGCAACTCTGATGA	59.603	41.667	7.54	0.00	45.72	2.92
10	11	4.439700	CCCTAATTTGCAGCAACTCTGATG	60.440	45.833	7.54	0.00	45.72	3.07
11	12	3.698040	CCCTAATTTGCAGCAACTCTGAT	59.302	43.478	7.54	0.00	45.72	2.90
12	13	3.084039	CCCTAATTTGCAGCAACTCTGA	58.916	45.455	7.54	0.00	45.72	3.27
13	14	3.084039	TCCCTAATTTGCAGCAACTCTG	58.916	45.455	7.54	0.00	45.62	3.35
14	15	3.350833	CTCCCTAATTTGCAGCAACTCT	58.649	45.455	7.54	0.00	0.00	3.24
15	16	2.424956	CCTCCCTAATTTGCAGCAACTC	59.575	50.000	7.54	0.00	0.00	3.01
16	17	2.450476	CCTCCCTAATTTGCAGCAACT	58.550	47.619	7.54	0.00	0.00	3.16
17	18	1.478105	CCCTCCCTAATTTGCAGCAAC	59.522	52.381	7.54	0.00	0.00	4.17
18	19	1.619432	CCCCTCCCTAATTTGCAGCAA	60.619	52.381	2.83	2.83	0.00	3.91
19	20	0.033208	CCCCTCCCTAATTTGCAGCA	60.033	55.000	0.00	0.00	0.00	4.41
20	21	0.756815	CCCCCTCCCTAATTTGCAGC	60.757	60.000	0.00	0.00	0.00	5.25
21	22	0.756815	GCCCCCTCCCTAATTTGCAG	60.757	60.000	0.00	0.00	0.00	4.41
22	23	1.221213	AGCCCCCTCCCTAATTTGCA	61.221	55.000	0.00	0.00	0.00	4.08
23	24	0.032117	AAGCCCCCTCCCTAATTTGC	60.032	55.000	0.00	0.00	0.00	3.68
24	25	3.680777	TTAAGCCCCCTCCCTAATTTG	57.319	47.619	0.00	0.00	0.00	2.32
25	26	3.052109	CCTTTAAGCCCCCTCCCTAATTT	60.052	47.826	0.00	0.00	0.00	1.82
26	27	2.518407	CCTTTAAGCCCCCTCCCTAATT	59.482	50.000	0.00	0.00	0.00	1.40
27	28	2.144450	CCTTTAAGCCCCCTCCCTAAT	58.856	52.381	0.00	0.00	0.00	1.73
28	29	1.603634	CCTTTAAGCCCCCTCCCTAA	58.396	55.000	0.00	0.00	0.00	2.69
29	30	0.328158	CCCTTTAAGCCCCCTCCCTA	60.328	60.000	0.00	0.00	0.00	3.53
30	31	1.622752	CCCTTTAAGCCCCCTCCCT	60.623	63.158	0.00	0.00	0.00	4.20
31	32	0.999493	ATCCCTTTAAGCCCCCTCCC	60.999	60.000	0.00	0.00	0.00	4.30
32	33	0.186143	CATCCCTTTAAGCCCCCTCC	59.814	60.000	0.00	0.00	0.00	4.30
33	34	0.186143	CCATCCCTTTAAGCCCCCTC	59.814	60.000	0.00	0.00	0.00	4.30
34	35	1.949575	GCCATCCCTTTAAGCCCCCT	61.950	60.000	0.00	0.00	0.00	4.79
35	36	1.457643	GCCATCCCTTTAAGCCCCC	60.458	63.158	0.00	0.00	0.00	5.40
36	37	0.850784	TAGCCATCCCTTTAAGCCCC	59.149	55.000	0.00	0.00	0.00	5.80
37	38	1.774856	TCTAGCCATCCCTTTAAGCCC	59.225	52.381	0.00	0.00	0.00	5.19
38	39	2.224646	CCTCTAGCCATCCCTTTAAGCC	60.225	54.545	0.00	0.00	0.00	4.35
39	40	2.439880	ACCTCTAGCCATCCCTTTAAGC	59.560	50.000	0.00	0.00	0.00	3.09
40	41	3.181450	CCACCTCTAGCCATCCCTTTAAG	60.181	52.174	0.00	0.00	0.00	1.85
41	42	2.777692	CCACCTCTAGCCATCCCTTTAA	59.222	50.000	0.00	0.00	0.00	1.52
42	43	2.293586	ACCACCTCTAGCCATCCCTTTA	60.294	50.000	0.00	0.00	0.00	1.85
43	44	1.216990	CCACCTCTAGCCATCCCTTT	58.783	55.000	0.00	0.00	0.00	3.11
44	45	0.044855	ACCACCTCTAGCCATCCCTT	59.955	55.000	0.00	0.00	0.00	3.95
45	46	0.692419	CACCACCTCTAGCCATCCCT	60.692	60.000	0.00	0.00	0.00	4.20
46	47	1.700042	CCACCACCTCTAGCCATCCC	61.700	65.000	0.00	0.00	0.00	3.85
47	48	0.691078	TCCACCACCTCTAGCCATCC	60.691	60.000	0.00	0.00	0.00	3.51
48	49	0.466124	GTCCACCACCTCTAGCCATC	59.534	60.000	0.00	0.00	0.00	3.51
49	50	0.252696	TGTCCACCACCTCTAGCCAT	60.253	55.000	0.00	0.00	0.00	4.40
50	51	0.472925	TTGTCCACCACCTCTAGCCA	60.473	55.000	0.00	0.00	0.00	4.75
51	52	0.690762	TTTGTCCACCACCTCTAGCC	59.309	55.000	0.00	0.00	0.00	3.93
52	53	2.152016	GTTTTGTCCACCACCTCTAGC	58.848	52.381	0.00	0.00	0.00	3.42
53	54	2.413837	CGTTTTGTCCACCACCTCTAG	58.586	52.381	0.00	0.00	0.00	2.43
54	55	1.071071	CCGTTTTGTCCACCACCTCTA	59.929	52.381	0.00	0.00	0.00	2.43
55	56	0.179029	CCGTTTTGTCCACCACCTCT	60.179	55.000	0.00	0.00	0.00	3.69
56	57	0.464916	ACCGTTTTGTCCACCACCTC	60.465	55.000	0.00	0.00	0.00	3.85
57	58	0.750182	CACCGTTTTGTCCACCACCT	60.750	55.000	0.00	0.00	0.00	4.00
58	59	1.730451	CCACCGTTTTGTCCACCACC	61.730	60.000	0.00	0.00	0.00	4.61
59	60	1.033202	ACCACCGTTTTGTCCACCAC	61.033	55.000	0.00	0.00	0.00	4.16
60	61	1.032657	CACCACCGTTTTGTCCACCA	61.033	55.000	0.00	0.00	0.00	4.17
61	62	1.033202	ACACCACCGTTTTGTCCACC	61.033	55.000	0.00	0.00	0.00	4.61
62	63	0.099791	CACACCACCGTTTTGTCCAC	59.900	55.000	0.00	0.00	0.00	4.02
63	64	1.032657	CCACACCACCGTTTTGTCCA	61.033	55.000	0.00	0.00	0.00	4.02
64	65	1.730451	CCCACACCACCGTTTTGTCC	61.730	60.000	0.00	0.00	0.00	4.02
65	66	0.748729	TCCCACACCACCGTTTTGTC	60.749	55.000	0.00	0.00	0.00	3.18
66	67	0.750182	CTCCCACACCACCGTTTTGT	60.750	55.000	0.00	0.00	0.00	2.83
67	68	1.452145	CCTCCCACACCACCGTTTTG	61.452	60.000	0.00	0.00	0.00	2.44
68	69	1.152839	CCTCCCACACCACCGTTTT	60.153	57.895	0.00	0.00	0.00	2.43
69	70	2.333701	GACCTCCCACACCACCGTTT	62.334	60.000	0.00	0.00	0.00	3.60
70	71	2.770904	ACCTCCCACACCACCGTT	60.771	61.111	0.00	0.00	0.00	4.44
71	72	3.239253	GACCTCCCACACCACCGT	61.239	66.667	0.00	0.00	0.00	4.83
72	73	2.731691	CTTGACCTCCCACACCACCG	62.732	65.000	0.00	0.00	0.00	4.94
73	74	1.073199	CTTGACCTCCCACACCACC	59.927	63.158	0.00	0.00	0.00	4.61
74	75	1.073199	CCTTGACCTCCCACACCAC	59.927	63.158	0.00	0.00	0.00	4.16
75	76	2.153401	CCCTTGACCTCCCACACCA	61.153	63.158	0.00	0.00	0.00	4.17
76	77	1.423794	TTCCCTTGACCTCCCACACC	61.424	60.000	0.00	0.00	0.00	4.16
77	78	0.036875	CTTCCCTTGACCTCCCACAC	59.963	60.000	0.00	0.00	0.00	3.82
78	79	1.133809	CCTTCCCTTGACCTCCCACA	61.134	60.000	0.00	0.00	0.00	4.17
79	80	1.685820	CCTTCCCTTGACCTCCCAC	59.314	63.158	0.00	0.00	0.00	4.61
80	81	1.541368	CCCTTCCCTTGACCTCCCA	60.541	63.158	0.00	0.00	0.00	4.37
81	82	2.985116	GCCCTTCCCTTGACCTCCC	61.985	68.421	0.00	0.00	0.00	4.30
82	83	2.677848	GCCCTTCCCTTGACCTCC	59.322	66.667	0.00	0.00	0.00	4.30
83	84	2.269241	CGCCCTTCCCTTGACCTC	59.731	66.667	0.00	0.00	0.00	3.85
84	85	3.330720	CCGCCCTTCCCTTGACCT	61.331	66.667	0.00	0.00	0.00	3.85
86	87	2.193087	TTAGCCGCCCTTCCCTTGAC	62.193	60.000	0.00	0.00	0.00	3.18
87	88	1.921346	TTAGCCGCCCTTCCCTTGA	60.921	57.895	0.00	0.00	0.00	3.02
88	89	1.749258	GTTAGCCGCCCTTCCCTTG	60.749	63.158	0.00	0.00	0.00	3.61
89	90	2.675371	GTTAGCCGCCCTTCCCTT	59.325	61.111	0.00	0.00	0.00	3.95
90	91	3.782443	CGTTAGCCGCCCTTCCCT	61.782	66.667	0.00	0.00	0.00	4.20
91	92	3.735037	CTCGTTAGCCGCCCTTCCC	62.735	68.421	0.00	0.00	36.19	3.97
92	93	2.202892	CTCGTTAGCCGCCCTTCC	60.203	66.667	0.00	0.00	36.19	3.46
93	94	2.202892	CCTCGTTAGCCGCCCTTC	60.203	66.667	0.00	0.00	36.19	3.46
94	95	4.468689	GCCTCGTTAGCCGCCCTT	62.469	66.667	0.00	0.00	36.19	3.95
102	103	3.179265	CACGCACCGCCTCGTTAG	61.179	66.667	0.00	0.00	36.73	2.34
103	104	4.728102	CCACGCACCGCCTCGTTA	62.728	66.667	0.00	0.00	36.73	3.18
147	148	0.681243	CCTAACAGCTTGCTTCCCCC	60.681	60.000	0.00	0.00	0.00	5.40
148	149	0.681243	CCCTAACAGCTTGCTTCCCC	60.681	60.000	0.00	0.00	0.00	4.81
149	150	1.315981	GCCCTAACAGCTTGCTTCCC	61.316	60.000	0.00	0.00	0.00	3.97
150	151	0.322906	AGCCCTAACAGCTTGCTTCC	60.323	55.000	0.00	0.00	37.24	3.46
151	152	2.284190	CTAGCCCTAACAGCTTGCTTC	58.716	52.381	0.00	0.00	41.83	3.86
152	153	1.065126	CCTAGCCCTAACAGCTTGCTT	60.065	52.381	0.00	0.00	41.83	3.91
153	154	0.543749	CCTAGCCCTAACAGCTTGCT	59.456	55.000	0.00	0.00	41.83	3.91
154	155	0.253327	ACCTAGCCCTAACAGCTTGC	59.747	55.000	0.00	0.00	41.83	4.01
155	156	1.471676	CGACCTAGCCCTAACAGCTTG	60.472	57.143	0.00	0.00	41.83	4.01
156	157	0.824759	CGACCTAGCCCTAACAGCTT	59.175	55.000	0.00	0.00	41.83	3.74
157	158	1.043673	CCGACCTAGCCCTAACAGCT	61.044	60.000	0.00	0.00	44.49	4.24
158	159	1.442148	CCGACCTAGCCCTAACAGC	59.558	63.158	0.00	0.00	0.00	4.40
159	160	1.400530	CCCCGACCTAGCCCTAACAG	61.401	65.000	0.00	0.00	0.00	3.16
160	161	1.382146	CCCCGACCTAGCCCTAACA	60.382	63.158	0.00	0.00	0.00	2.41
161	162	2.138831	CCCCCGACCTAGCCCTAAC	61.139	68.421	0.00	0.00	0.00	2.34
162	163	2.284493	CCCCCGACCTAGCCCTAA	59.716	66.667	0.00	0.00	0.00	2.69
163	164	2.701093	TCCCCCGACCTAGCCCTA	60.701	66.667	0.00	0.00	0.00	3.53
164	165	4.159108	CTCCCCCGACCTAGCCCT	62.159	72.222	0.00	0.00	0.00	5.19
165	166	4.153330	TCTCCCCCGACCTAGCCC	62.153	72.222	0.00	0.00	0.00	5.19
166	167	2.522193	CTCTCCCCCGACCTAGCC	60.522	72.222	0.00	0.00	0.00	3.93
167	168	2.522193	CCTCTCCCCCGACCTAGC	60.522	72.222	0.00	0.00	0.00	3.42
168	169	2.198980	CCCTCTCCCCCGACCTAG	59.801	72.222	0.00	0.00	0.00	3.02
169	170	3.436028	CCCCTCTCCCCCGACCTA	61.436	72.222	0.00	0.00	0.00	3.08
195	196	0.460987	ATCTTCTGCTTTCTCCCGCG	60.461	55.000	0.00	0.00	0.00	6.46
197	198	2.680312	TGATCTTCTGCTTTCTCCCG	57.320	50.000	0.00	0.00	0.00	5.14
207	208	2.890109	GCCGCCGCATGATCTTCTG	61.890	63.158	0.00	0.00	34.03	3.02
223	224	1.430632	CAACAGCCATGATCACGCC	59.569	57.895	11.95	0.00	0.00	5.68
253	254	2.418628	TCAATCGTTTTTCGGAGCCATC	59.581	45.455	0.00	0.00	40.32	3.51
254	255	2.161609	GTCAATCGTTTTTCGGAGCCAT	59.838	45.455	0.00	0.00	40.32	4.40
260	261	3.870723	TCAGTGTCAATCGTTTTTCGG	57.129	42.857	0.00	0.00	40.32	4.30
261	262	6.732181	ATTTTCAGTGTCAATCGTTTTTCG	57.268	33.333	0.00	0.00	41.41	3.46
262	263	7.894847	ACAATTTTCAGTGTCAATCGTTTTTC	58.105	30.769	0.00	0.00	0.00	2.29
263	264	7.826260	ACAATTTTCAGTGTCAATCGTTTTT	57.174	28.000	0.00	0.00	0.00	1.94
264	265	7.826260	AACAATTTTCAGTGTCAATCGTTTT	57.174	28.000	0.00	0.00	28.67	2.43
265	266	7.543868	TGAAACAATTTTCAGTGTCAATCGTTT	59.456	29.630	6.06	6.06	45.08	3.60
266	267	7.032580	TGAAACAATTTTCAGTGTCAATCGTT	58.967	30.769	0.00	0.00	45.08	3.85
267	268	6.559810	TGAAACAATTTTCAGTGTCAATCGT	58.440	32.000	0.00	0.00	45.08	3.73
311	312	8.646004	TGATTCAAGGATTATTGGTTTTTGACA	58.354	29.630	0.00	0.00	0.00	3.58
320	321	5.505173	AACGCTGATTCAAGGATTATTGG	57.495	39.130	0.00	0.00	0.00	3.16
368	371	4.092091	CGACTTTGAGAGCACATAACTTCC	59.908	45.833	0.00	0.00	0.00	3.46
369	372	4.686554	ACGACTTTGAGAGCACATAACTTC	59.313	41.667	0.00	0.00	0.00	3.01
623	628	4.308458	TTGTGCGGGTGGACGGAG	62.308	66.667	0.00	0.00	39.68	4.63
679	684	1.450669	GCCAATTAAGACCGCGGGA	60.451	57.895	31.76	8.83	0.00	5.14
715	720	0.970937	CCTCGACTTGGGTCCAGCTA	60.971	60.000	0.00	0.00	39.15	3.32
757	762	1.073284	GTTTGGAACTGGTAGGCTCCA	59.927	52.381	0.00	0.00	36.16	3.86
788	793	2.362503	ACGGACGGAGAGGATGCA	60.363	61.111	0.00	0.00	0.00	3.96
835	840	2.019951	CCTTTATACGGCGCGCGAT	61.020	57.895	37.18	20.72	0.00	4.58
914	923	6.403049	TGGTTGGTTTTCCTTTTCTTCTTTC	58.597	36.000	0.00	0.00	41.38	2.62
915	924	6.212589	TCTGGTTGGTTTTCCTTTTCTTCTTT	59.787	34.615	0.00	0.00	41.38	2.52
917	926	5.269189	TCTGGTTGGTTTTCCTTTTCTTCT	58.731	37.500	0.00	0.00	41.38	2.85
918	927	5.592104	TCTGGTTGGTTTTCCTTTTCTTC	57.408	39.130	0.00	0.00	41.38	2.87
954	963	0.611714	TCCTCCCACGCTAAGAAACC	59.388	55.000	0.00	0.00	0.00	3.27
977	986	4.200283	CTCGCCCACGCTCTCCTC	62.200	72.222	0.00	0.00	39.84	3.71
991	1000	4.598894	CTCCGCCATGCTCCCTCG	62.599	72.222	0.00	0.00	0.00	4.63
1086	1102	2.125229	TCGTCCGAGTCCGAGGAG	60.125	66.667	0.00	0.00	37.18	3.69
1131	1147	0.533085	GGCGGTAGATCTTGGCCTTC	60.533	60.000	18.80	0.00	40.59	3.46
1228	1244	4.997565	ACACCAAAGCATAATCAATTCCG	58.002	39.130	0.00	0.00	0.00	4.30
1280	1296	2.104281	AGTTCCCACTAAACAAGCGAGT	59.896	45.455	0.00	0.00	0.00	4.18
1332	1349	9.001542	TCTCGTATCTTATCCTAAAGCTAGTTC	57.998	37.037	0.00	0.00	0.00	3.01
1354	1380	0.594110	GAGGGTCCTATCGCTTCTCG	59.406	60.000	0.00	0.00	40.15	4.04
1387	1413	4.003648	CCTCCGAACAAGCTTTAGAACAT	58.996	43.478	0.00	0.00	0.00	2.71
1402	1441	4.530946	AGAATGAACTCTAAACCCTCCGAA	59.469	41.667	0.00	0.00	0.00	4.30
1404	1443	4.473477	AGAATGAACTCTAAACCCTCCG	57.527	45.455	0.00	0.00	0.00	4.63
1420	1459	4.394300	CCCTCAGTTCACTGCTTAAGAATG	59.606	45.833	6.67	0.65	43.46	2.67
1421	1460	4.042187	ACCCTCAGTTCACTGCTTAAGAAT	59.958	41.667	6.67	0.00	43.46	2.40
1425	1467	2.972713	AGACCCTCAGTTCACTGCTTAA	59.027	45.455	1.74	0.00	43.46	1.85
1434	1476	2.158957	TCAACACACAGACCCTCAGTTC	60.159	50.000	0.00	0.00	0.00	3.01
1441	1483	3.004734	CCTCAAATTCAACACACAGACCC	59.995	47.826	0.00	0.00	0.00	4.46
1461	1503	1.445871	GTTTAACCGTCGCCATTCCT	58.554	50.000	0.00	0.00	0.00	3.36
1463	1505	1.070038	TCGTTTAACCGTCGCCATTC	58.930	50.000	0.00	0.00	0.00	2.67
1488	1530	4.756135	GGGGTTTAATGTGACGACAAACTA	59.244	41.667	0.00	0.00	35.11	2.24
1502	1544	6.543735	GTCTGGAGCATATTAGGGGTTTAAT	58.456	40.000	0.00	0.00	0.00	1.40
1503	1545	5.454187	CGTCTGGAGCATATTAGGGGTTTAA	60.454	44.000	0.00	0.00	0.00	1.52
1540	1583	5.009410	CCATTAAGCAATCCAGATCTGTTCC	59.991	44.000	21.11	0.42	0.00	3.62
1562	1605	3.283751	CACCCGAATAAACATTAGGCCA	58.716	45.455	5.01	0.00	0.00	5.36
1563	1606	3.284617	ACACCCGAATAAACATTAGGCC	58.715	45.455	0.00	0.00	0.00	5.19
1579	1623	0.890683	CAGATCAGGCCAAAACACCC	59.109	55.000	5.01	0.00	0.00	4.61
1610	1654	9.396938	GCAGCTGCAAACAAAATAAAATAAAAT	57.603	25.926	33.36	0.00	41.59	1.82
1612	1656	8.068977	CAGCAGCTGCAAACAAAATAAAATAAA	58.931	29.630	38.24	0.00	45.16	1.40
1613	1657	7.440556	TCAGCAGCTGCAAACAAAATAAAATAA	59.559	29.630	38.24	0.00	45.16	1.40
1614	1658	6.927936	TCAGCAGCTGCAAACAAAATAAAATA	59.072	30.769	38.24	4.18	45.16	1.40
1615	1659	5.759273	TCAGCAGCTGCAAACAAAATAAAAT	59.241	32.000	38.24	11.50	45.16	1.82
1616	1660	5.114780	TCAGCAGCTGCAAACAAAATAAAA	58.885	33.333	38.24	6.82	45.16	1.52
1617	1661	4.691175	TCAGCAGCTGCAAACAAAATAAA	58.309	34.783	38.24	6.03	45.16	1.40
1620	1664	2.894763	TCAGCAGCTGCAAACAAAAT	57.105	40.000	38.24	14.33	45.16	1.82
1626	1670	1.612676	ACAAGATCAGCAGCTGCAAA	58.387	45.000	38.24	26.15	45.16	3.68
1775	1819	4.709397	CAGACATTGGAGTAGAGGAAGAGT	59.291	45.833	0.00	0.00	0.00	3.24
1787	1831	4.158949	TGGATGAAAATGCAGACATTGGAG	59.841	41.667	0.00	0.00	45.90	3.86
1834	1878	9.023962	AGGTCAAGCATAAGTTCAATCAATTTA	57.976	29.630	0.00	0.00	0.00	1.40
1844	1888	2.159462	GCAGCAGGTCAAGCATAAGTTC	60.159	50.000	0.00	0.00	0.00	3.01
1898	1942	8.748412	ACAATTAGCAAATTCAAATGGCTAGTA	58.252	29.630	8.48	0.00	35.16	1.82
1974	2018	4.528206	GGAATTTTCACCTCAGGGATGTTT	59.472	41.667	0.00	0.00	36.25	2.83
2204	2249	1.560866	AAGAAGCCAGAGCCCTCCAG	61.561	60.000	0.00	0.00	41.25	3.86
2276	2321	2.641559	GCTTGCAGCACAGGTGAC	59.358	61.111	3.10	0.00	41.89	3.67
2308	2353	8.764524	ATAACTTCCATCGATATTTAGTGAGC	57.235	34.615	0.00	0.00	0.00	4.26
2358	2404	0.309922	CAGCACCACAAAGACTGCAG	59.690	55.000	13.48	13.48	31.71	4.41
2559	2617	0.036010	ATGAGGCGACAAGTTGAGGG	60.036	55.000	10.54	0.00	0.00	4.30
2560	2618	1.813513	AATGAGGCGACAAGTTGAGG	58.186	50.000	10.54	1.66	0.00	3.86
2668	2729	2.427506	ACAATCTTCAGCCGGAAACTC	58.572	47.619	5.05	0.00	34.44	3.01
2672	2733	2.559698	TCAACAATCTTCAGCCGGAA	57.440	45.000	5.05	0.00	0.00	4.30
2673	2734	2.237143	AGATCAACAATCTTCAGCCGGA	59.763	45.455	5.05	0.00	42.30	5.14
2714	2782	4.074970	AGAGTAACCATGCTGAAAGTTGG	58.925	43.478	0.00	0.00	42.67	3.77
2786	2854	6.203808	TCACTACGCAGTATATCACAAAGT	57.796	37.500	0.00	0.00	44.56	2.66
2787	2855	7.700322	AATCACTACGCAGTATATCACAAAG	57.300	36.000	0.00	0.00	44.56	2.77
2789	2857	9.406828	GATAAATCACTACGCAGTATATCACAA	57.593	33.333	0.00	0.00	44.56	3.33
2790	2858	8.027189	GGATAAATCACTACGCAGTATATCACA	58.973	37.037	0.00	0.00	44.56	3.58
2791	2859	8.027189	TGGATAAATCACTACGCAGTATATCAC	58.973	37.037	0.00	0.00	44.56	3.06
2792	2860	8.117813	TGGATAAATCACTACGCAGTATATCA	57.882	34.615	0.00	0.00	44.56	2.15
2793	2861	8.244802	ACTGGATAAATCACTACGCAGTATATC	58.755	37.037	0.00	0.00	44.56	1.63
2794	2862	8.123639	ACTGGATAAATCACTACGCAGTATAT	57.876	34.615	0.00	0.00	44.56	0.86
2795	2863	7.520451	ACTGGATAAATCACTACGCAGTATA	57.480	36.000	0.00	0.00	44.56	1.47
2796	2864	6.406692	ACTGGATAAATCACTACGCAGTAT	57.593	37.500	0.00	0.00	44.56	2.12
2827	2895	7.225011	GGGAGTACCTATTAAATGGAAGGAAG	58.775	42.308	4.40	0.00	35.85	3.46
2922	2996	8.261522	GTCTCTCAAAATAAATACTCCCTCTGT	58.738	37.037	0.00	0.00	0.00	3.41
3011	3085	7.033185	GCAACCCTTACATAAATACTTTGGTG	58.967	38.462	0.00	0.00	0.00	4.17
3012	3086	6.722129	TGCAACCCTTACATAAATACTTTGGT	59.278	34.615	0.00	0.00	0.00	3.67
3014	3088	8.921670	GTTTGCAACCCTTACATAAATACTTTG	58.078	33.333	0.00	0.00	0.00	2.77
3016	3090	8.184304	TGTTTGCAACCCTTACATAAATACTT	57.816	30.769	0.00	0.00	0.00	2.24
3017	3091	7.668052	TCTGTTTGCAACCCTTACATAAATACT	59.332	33.333	0.00	0.00	0.00	2.12
3018	3092	7.822658	TCTGTTTGCAACCCTTACATAAATAC	58.177	34.615	0.00	0.00	0.00	1.89
3019	3093	7.122055	CCTCTGTTTGCAACCCTTACATAAATA	59.878	37.037	0.00	0.00	0.00	1.40
3020	3094	6.071391	CCTCTGTTTGCAACCCTTACATAAAT	60.071	38.462	0.00	0.00	0.00	1.40
3022	3096	4.764823	CCTCTGTTTGCAACCCTTACATAA	59.235	41.667	0.00	0.00	0.00	1.90
3023	3097	4.331968	CCTCTGTTTGCAACCCTTACATA	58.668	43.478	0.00	0.00	0.00	2.29
3024	3098	3.157087	CCTCTGTTTGCAACCCTTACAT	58.843	45.455	0.00	0.00	0.00	2.29
3025	3099	2.582052	CCTCTGTTTGCAACCCTTACA	58.418	47.619	0.00	0.00	0.00	2.41
3026	3100	1.886542	CCCTCTGTTTGCAACCCTTAC	59.113	52.381	0.00	0.00	0.00	2.34
3027	3101	1.203001	CCCCTCTGTTTGCAACCCTTA	60.203	52.381	0.00	0.00	0.00	2.69
3028	3102	0.469892	CCCCTCTGTTTGCAACCCTT	60.470	55.000	0.00	0.00	0.00	3.95
3029	3103	1.153756	CCCCTCTGTTTGCAACCCT	59.846	57.895	0.00	0.00	0.00	4.34
3030	3104	2.574018	GCCCCTCTGTTTGCAACCC	61.574	63.158	0.00	0.00	0.00	4.11
3031	3105	1.398958	TTGCCCCTCTGTTTGCAACC	61.399	55.000	0.00	0.00	38.68	3.77
3032	3106	0.032540	CTTGCCCCTCTGTTTGCAAC	59.967	55.000	0.00	0.00	38.68	4.17
3033	3107	0.106268	TCTTGCCCCTCTGTTTGCAA	60.106	50.000	0.00	0.00	41.08	4.08
3034	3108	0.823356	GTCTTGCCCCTCTGTTTGCA	60.823	55.000	0.00	0.00	0.00	4.08
3035	3109	1.527433	GGTCTTGCCCCTCTGTTTGC	61.527	60.000	0.00	0.00	0.00	3.68
3036	3110	1.237285	CGGTCTTGCCCCTCTGTTTG	61.237	60.000	0.00	0.00	0.00	2.93
3037	3111	1.073199	CGGTCTTGCCCCTCTGTTT	59.927	57.895	0.00	0.00	0.00	2.83
3038	3112	1.705997	AACGGTCTTGCCCCTCTGTT	61.706	55.000	0.00	0.00	0.00	3.16
3039	3113	1.705997	AAACGGTCTTGCCCCTCTGT	61.706	55.000	0.00	0.00	0.00	3.41
3040	3114	0.323629	TAAACGGTCTTGCCCCTCTG	59.676	55.000	0.00	0.00	0.00	3.35
3041	3115	0.613777	CTAAACGGTCTTGCCCCTCT	59.386	55.000	0.00	0.00	0.00	3.69
3042	3116	0.611714	TCTAAACGGTCTTGCCCCTC	59.388	55.000	0.00	0.00	0.00	4.30
3043	3117	1.065418	CATCTAAACGGTCTTGCCCCT	60.065	52.381	0.00	0.00	0.00	4.79
3044	3118	1.339727	ACATCTAAACGGTCTTGCCCC	60.340	52.381	0.00	0.00	0.00	5.80
3045	3119	2.109425	ACATCTAAACGGTCTTGCCC	57.891	50.000	0.00	0.00	0.00	5.36
3046	3120	4.092968	CACTAACATCTAAACGGTCTTGCC	59.907	45.833	0.00	0.00	0.00	4.52
3047	3121	4.927425	TCACTAACATCTAAACGGTCTTGC	59.073	41.667	0.00	0.00	0.00	4.01
3048	3122	7.596749	AATCACTAACATCTAAACGGTCTTG	57.403	36.000	0.00	0.00	0.00	3.02
3049	3123	9.886132	ATAAATCACTAACATCTAAACGGTCTT	57.114	29.630	0.00	0.00	0.00	3.01
3066	3140	9.847706	CTGCTATAAGATCGTGTATAAATCACT	57.152	33.333	0.00	0.00	34.14	3.41
3067	3141	9.627395	ACTGCTATAAGATCGTGTATAAATCAC	57.373	33.333	0.00	0.00	0.00	3.06
3076	3150	9.601217	AAAGAAAATACTGCTATAAGATCGTGT	57.399	29.630	0.00	0.00	0.00	4.49
3100	3174	9.932207	TGGTCTCTCAAAATAAATACTCGTAAA	57.068	29.630	0.00	0.00	0.00	2.01
3103	3177	9.449719	AAATGGTCTCTCAAAATAAATACTCGT	57.550	29.630	0.00	0.00	0.00	4.18
3109	3183	9.533831	ACCTGTAAATGGTCTCTCAAAATAAAT	57.466	29.630	0.00	0.00	31.03	1.40
3110	3184	8.934023	ACCTGTAAATGGTCTCTCAAAATAAA	57.066	30.769	0.00	0.00	31.03	1.40
3113	3187	8.960591	CAATACCTGTAAATGGTCTCTCAAAAT	58.039	33.333	0.00	0.00	38.88	1.82
3114	3188	8.160765	TCAATACCTGTAAATGGTCTCTCAAAA	58.839	33.333	0.00	0.00	38.88	2.44
3115	3189	7.685481	TCAATACCTGTAAATGGTCTCTCAAA	58.315	34.615	0.00	0.00	38.88	2.69
3116	3190	7.252612	TCAATACCTGTAAATGGTCTCTCAA	57.747	36.000	0.00	0.00	38.88	3.02
3117	3191	6.867519	TCAATACCTGTAAATGGTCTCTCA	57.132	37.500	0.00	0.00	38.88	3.27
3118	3192	8.861086	TCTATCAATACCTGTAAATGGTCTCTC	58.139	37.037	0.00	0.00	38.88	3.20
3119	3193	8.783660	TCTATCAATACCTGTAAATGGTCTCT	57.216	34.615	0.00	0.00	38.88	3.10
3120	3194	9.262358	GTTCTATCAATACCTGTAAATGGTCTC	57.738	37.037	0.00	0.00	38.88	3.36
3121	3195	8.993424	AGTTCTATCAATACCTGTAAATGGTCT	58.007	33.333	0.00	0.00	38.88	3.85
3122	3196	9.614792	AAGTTCTATCAATACCTGTAAATGGTC	57.385	33.333	0.00	0.00	38.88	4.02
3123	3197	9.614792	GAAGTTCTATCAATACCTGTAAATGGT	57.385	33.333	0.00	0.00	41.28	3.55
3124	3198	9.613428	TGAAGTTCTATCAATACCTGTAAATGG	57.387	33.333	4.17	0.00	0.00	3.16
3127	3201	9.832445	GGATGAAGTTCTATCAATACCTGTAAA	57.168	33.333	4.17	0.00	0.00	2.01
3128	3202	8.141909	CGGATGAAGTTCTATCAATACCTGTAA	58.858	37.037	4.17	0.00	0.00	2.41
3129	3203	7.255836	CCGGATGAAGTTCTATCAATACCTGTA	60.256	40.741	0.00	0.00	0.00	2.74
3130	3204	6.463049	CCGGATGAAGTTCTATCAATACCTGT	60.463	42.308	0.00	0.00	0.00	4.00
3131	3205	5.928839	CCGGATGAAGTTCTATCAATACCTG	59.071	44.000	0.00	0.00	0.00	4.00
3132	3206	5.602978	ACCGGATGAAGTTCTATCAATACCT	59.397	40.000	9.46	0.00	0.00	3.08
3133	3207	5.855045	ACCGGATGAAGTTCTATCAATACC	58.145	41.667	9.46	0.00	0.00	2.73
3136	3210	9.712305	CTTATAACCGGATGAAGTTCTATCAAT	57.288	33.333	9.46	0.00	0.00	2.57
3137	3211	8.920174	TCTTATAACCGGATGAAGTTCTATCAA	58.080	33.333	9.46	0.00	0.00	2.57
3138	3212	8.473358	TCTTATAACCGGATGAAGTTCTATCA	57.527	34.615	9.46	0.00	0.00	2.15
3139	3213	9.760077	TTTCTTATAACCGGATGAAGTTCTATC	57.240	33.333	9.46	5.73	0.00	2.08
3182	3256	9.541884	ACCCTTACATAAATACTTGGTGAAAAT	57.458	29.630	0.00	0.00	0.00	1.82
3183	3257	8.943594	ACCCTTACATAAATACTTGGTGAAAA	57.056	30.769	0.00	0.00	0.00	2.29
3184	3258	8.798402	CAACCCTTACATAAATACTTGGTGAAA	58.202	33.333	0.00	0.00	0.00	2.69
3185	3259	7.094118	GCAACCCTTACATAAATACTTGGTGAA	60.094	37.037	0.00	0.00	0.00	3.18
3186	3260	6.376018	GCAACCCTTACATAAATACTTGGTGA	59.624	38.462	0.00	0.00	0.00	4.02
3243	3326	8.033038	CAGTTACTAGGCTCTTACAATGTTACA	58.967	37.037	0.00	0.00	0.00	2.41
3244	3327	7.010275	GCAGTTACTAGGCTCTTACAATGTTAC	59.990	40.741	0.00	0.00	0.00	2.50
3260	3343	3.133362	TCCCATAAACCGGCAGTTACTAG	59.867	47.826	0.00	0.00	37.88	2.57
3263	3346	2.011947	GTCCCATAAACCGGCAGTTAC	58.988	52.381	0.00	0.00	37.88	2.50
3268	3351	0.253610	AATCGTCCCATAAACCGGCA	59.746	50.000	0.00	0.00	0.00	5.69
3278	3361	4.502604	GGGATCTATTCGAAAATCGTCCCA	60.503	45.833	23.20	0.00	41.35	4.37
3283	3366	5.349817	CAGGATGGGATCTATTCGAAAATCG	59.650	44.000	0.00	0.00	42.10	3.34
3284	3367	6.234177	ACAGGATGGGATCTATTCGAAAATC	58.766	40.000	0.00	6.00	43.62	2.17
3285	3368	6.192970	ACAGGATGGGATCTATTCGAAAAT	57.807	37.500	0.00	0.00	43.62	1.82
3286	3369	5.630415	ACAGGATGGGATCTATTCGAAAA	57.370	39.130	0.00	0.00	43.62	2.29
3287	3370	6.935240	ATACAGGATGGGATCTATTCGAAA	57.065	37.500	0.00	0.00	43.62	3.46
3288	3371	6.935240	AATACAGGATGGGATCTATTCGAA	57.065	37.500	0.00	0.00	43.62	3.71
3289	3372	6.935240	AAATACAGGATGGGATCTATTCGA	57.065	37.500	0.00	0.00	43.62	3.71
3290	3373	7.986085	AAAAATACAGGATGGGATCTATTCG	57.014	36.000	0.00	0.00	43.62	3.34
3320	3403	2.242043	CTGGAATATGCATGTTCCCCC	58.758	52.381	37.54	22.91	44.58	5.40
3321	3404	1.615392	GCTGGAATATGCATGTTCCCC	59.385	52.381	37.54	28.41	44.58	4.81
3322	3405	2.295349	CAGCTGGAATATGCATGTTCCC	59.705	50.000	37.54	27.76	44.58	3.97
3323	3406	2.954318	ACAGCTGGAATATGCATGTTCC	59.046	45.455	35.76	35.76	45.17	3.62
3324	3407	4.644103	AACAGCTGGAATATGCATGTTC	57.356	40.909	23.70	23.70	30.74	3.18
3325	3408	4.142093	GGAAACAGCTGGAATATGCATGTT	60.142	41.667	19.93	9.33	34.57	2.71
3326	3409	3.382546	GGAAACAGCTGGAATATGCATGT	59.617	43.478	19.93	0.00	0.00	3.21
3327	3410	3.635373	AGGAAACAGCTGGAATATGCATG	59.365	43.478	19.93	0.00	0.00	4.06
3328	3411	3.887716	GAGGAAACAGCTGGAATATGCAT	59.112	43.478	19.93	3.79	0.00	3.96
3329	3412	3.054139	AGAGGAAACAGCTGGAATATGCA	60.054	43.478	19.93	0.00	0.00	3.96
3330	3413	3.314635	CAGAGGAAACAGCTGGAATATGC	59.685	47.826	19.93	4.36	33.10	3.14
3331	3414	4.521146	ACAGAGGAAACAGCTGGAATATG	58.479	43.478	19.93	9.99	38.76	1.78
3332	3415	4.851639	ACAGAGGAAACAGCTGGAATAT	57.148	40.909	19.93	0.07	38.76	1.28
3333	3416	4.081087	GGTACAGAGGAAACAGCTGGAATA	60.081	45.833	19.93	0.00	38.76	1.75
3334	3417	3.307762	GGTACAGAGGAAACAGCTGGAAT	60.308	47.826	19.93	2.92	38.76	3.01
3335	3418	2.038557	GGTACAGAGGAAACAGCTGGAA	59.961	50.000	19.93	0.00	38.76	3.53
3336	3419	1.623811	GGTACAGAGGAAACAGCTGGA	59.376	52.381	19.93	0.00	38.76	3.86
3337	3420	1.625818	AGGTACAGAGGAAACAGCTGG	59.374	52.381	19.93	0.00	38.76	4.85
3338	3421	3.673594	CGTAGGTACAGAGGAAACAGCTG	60.674	52.174	13.48	13.48	39.86	4.24
3339	3422	2.492484	CGTAGGTACAGAGGAAACAGCT	59.508	50.000	0.00	0.00	0.00	4.24
3340	3423	2.877335	CGTAGGTACAGAGGAAACAGC	58.123	52.381	0.00	0.00	0.00	4.40
3356	3439	1.681264	GAATTGCCCCAAATCCCGTAG	59.319	52.381	0.00	0.00	0.00	3.51
3357	3440	1.286553	AGAATTGCCCCAAATCCCGTA	59.713	47.619	0.00	0.00	0.00	4.02
3358	3441	0.041090	AGAATTGCCCCAAATCCCGT	59.959	50.000	0.00	0.00	0.00	5.28
3359	3442	1.134729	CAAGAATTGCCCCAAATCCCG	60.135	52.381	0.00	0.00	40.39	5.14
3360	3443	2.696989	CAAGAATTGCCCCAAATCCC	57.303	50.000	0.00	0.00	40.39	3.85
3372	3455	4.590222	ACTTTTCATGTCCCTGCAAGAATT	59.410	37.500	0.00	0.00	34.07	2.17
3373	3456	4.154942	ACTTTTCATGTCCCTGCAAGAAT	58.845	39.130	0.00	0.00	34.07	2.40
3374	3457	3.565307	ACTTTTCATGTCCCTGCAAGAA	58.435	40.909	0.00	0.00	34.07	2.52
3375	3458	3.228188	ACTTTTCATGTCCCTGCAAGA	57.772	42.857	0.00	0.00	34.07	3.02
3376	3459	4.761739	TCTTACTTTTCATGTCCCTGCAAG	59.238	41.667	0.00	0.00	0.00	4.01
3377	3460	4.724399	TCTTACTTTTCATGTCCCTGCAA	58.276	39.130	0.00	0.00	0.00	4.08
3378	3461	4.365514	TCTTACTTTTCATGTCCCTGCA	57.634	40.909	0.00	0.00	0.00	4.41
3379	3462	5.705609	TTTCTTACTTTTCATGTCCCTGC	57.294	39.130	0.00	0.00	0.00	4.85
3380	3463	6.209391	ACCATTTCTTACTTTTCATGTCCCTG	59.791	38.462	0.00	0.00	0.00	4.45
3381	3464	6.314917	ACCATTTCTTACTTTTCATGTCCCT	58.685	36.000	0.00	0.00	0.00	4.20
3382	3465	6.590234	ACCATTTCTTACTTTTCATGTCCC	57.410	37.500	0.00	0.00	0.00	4.46
3383	3466	6.868339	CCAACCATTTCTTACTTTTCATGTCC	59.132	38.462	0.00	0.00	0.00	4.02
3384	3467	6.366061	GCCAACCATTTCTTACTTTTCATGTC	59.634	38.462	0.00	0.00	0.00	3.06
3385	3468	6.223120	GCCAACCATTTCTTACTTTTCATGT	58.777	36.000	0.00	0.00	0.00	3.21
3386	3469	5.345741	CGCCAACCATTTCTTACTTTTCATG	59.654	40.000	0.00	0.00	0.00	3.07
3387	3470	5.469479	CGCCAACCATTTCTTACTTTTCAT	58.531	37.500	0.00	0.00	0.00	2.57
3388	3471	4.261825	CCGCCAACCATTTCTTACTTTTCA	60.262	41.667	0.00	0.00	0.00	2.69
3389	3472	4.234574	CCGCCAACCATTTCTTACTTTTC	58.765	43.478	0.00	0.00	0.00	2.29
3390	3473	3.006430	CCCGCCAACCATTTCTTACTTTT	59.994	43.478	0.00	0.00	0.00	2.27
3391	3474	2.560981	CCCGCCAACCATTTCTTACTTT	59.439	45.455	0.00	0.00	0.00	2.66
3392	3475	2.167662	CCCGCCAACCATTTCTTACTT	58.832	47.619	0.00	0.00	0.00	2.24
3393	3476	1.353022	TCCCGCCAACCATTTCTTACT	59.647	47.619	0.00	0.00	0.00	2.24
3394	3477	1.743394	CTCCCGCCAACCATTTCTTAC	59.257	52.381	0.00	0.00	0.00	2.34
3395	3478	1.631388	TCTCCCGCCAACCATTTCTTA	59.369	47.619	0.00	0.00	0.00	2.10
3396	3479	0.404040	TCTCCCGCCAACCATTTCTT	59.596	50.000	0.00	0.00	0.00	2.52
3397	3480	0.035056	CTCTCCCGCCAACCATTTCT	60.035	55.000	0.00	0.00	0.00	2.52
3398	3481	0.035439	TCTCTCCCGCCAACCATTTC	60.035	55.000	0.00	0.00	0.00	2.17
3399	3482	0.404040	TTCTCTCCCGCCAACCATTT	59.596	50.000	0.00	0.00	0.00	2.32
3400	3483	0.322546	GTTCTCTCCCGCCAACCATT	60.323	55.000	0.00	0.00	0.00	3.16
3401	3484	1.201429	AGTTCTCTCCCGCCAACCAT	61.201	55.000	0.00	0.00	0.00	3.55
3402	3485	1.415672	AAGTTCTCTCCCGCCAACCA	61.416	55.000	0.00	0.00	0.00	3.67
3403	3486	0.250770	AAAGTTCTCTCCCGCCAACC	60.251	55.000	0.00	0.00	0.00	3.77
3404	3487	1.605753	AAAAGTTCTCTCCCGCCAAC	58.394	50.000	0.00	0.00	0.00	3.77
3405	3488	2.290071	CCTAAAAGTTCTCTCCCGCCAA	60.290	50.000	0.00	0.00	0.00	4.52
3406	3489	1.278127	CCTAAAAGTTCTCTCCCGCCA	59.722	52.381	0.00	0.00	0.00	5.69
3407	3490	1.407025	CCCTAAAAGTTCTCTCCCGCC	60.407	57.143	0.00	0.00	0.00	6.13
3408	3491	2.012554	GCCCTAAAAGTTCTCTCCCGC	61.013	57.143	0.00	0.00	0.00	6.13
3409	3492	1.407025	GGCCCTAAAAGTTCTCTCCCG	60.407	57.143	0.00	0.00	0.00	5.14
3410	3493	1.916874	AGGCCCTAAAAGTTCTCTCCC	59.083	52.381	0.00	0.00	0.00	4.30
3411	3494	2.941860	GCAGGCCCTAAAAGTTCTCTCC	60.942	54.545	0.00	0.00	0.00	3.71
3412	3495	2.026729	AGCAGGCCCTAAAAGTTCTCTC	60.027	50.000	0.00	0.00	0.00	3.20
3413	3496	1.988846	AGCAGGCCCTAAAAGTTCTCT	59.011	47.619	0.00	0.00	0.00	3.10
3414	3497	2.489722	CAAGCAGGCCCTAAAAGTTCTC	59.510	50.000	0.00	0.00	0.00	2.87
3415	3498	2.519013	CAAGCAGGCCCTAAAAGTTCT	58.481	47.619	0.00	0.00	0.00	3.01
3416	3499	1.546029	CCAAGCAGGCCCTAAAAGTTC	59.454	52.381	0.00	0.00	0.00	3.01
3417	3500	1.133167	ACCAAGCAGGCCCTAAAAGTT	60.133	47.619	0.00	0.00	43.14	2.66
3418	3501	0.482887	ACCAAGCAGGCCCTAAAAGT	59.517	50.000	0.00	0.00	43.14	2.66
3419	3502	1.273327	CAACCAAGCAGGCCCTAAAAG	59.727	52.381	0.00	0.00	43.14	2.27
3420	3503	1.337118	CAACCAAGCAGGCCCTAAAA	58.663	50.000	0.00	0.00	43.14	1.52
3421	3504	1.184970	GCAACCAAGCAGGCCCTAAA	61.185	55.000	0.00	0.00	43.14	1.85
3422	3505	1.606313	GCAACCAAGCAGGCCCTAA	60.606	57.895	0.00	0.00	43.14	2.69
3423	3506	2.035626	GCAACCAAGCAGGCCCTA	59.964	61.111	0.00	0.00	43.14	3.53
3436	3519	3.518068	GGGCTACATGCGGGCAAC	61.518	66.667	12.64	0.63	44.05	4.17
3437	3520	3.575703	TTGGGCTACATGCGGGCAA	62.576	57.895	12.64	0.51	44.05	4.52
3438	3521	4.040426	TTGGGCTACATGCGGGCA	62.040	61.111	12.64	0.00	44.05	5.36
3439	3522	3.518068	GTTGGGCTACATGCGGGC	61.518	66.667	0.00	0.00	44.05	6.13
3440	3523	2.828549	GGTTGGGCTACATGCGGG	60.829	66.667	0.00	0.00	44.05	6.13
3441	3524	2.045438	TGGTTGGGCTACATGCGG	60.045	61.111	0.00	0.00	44.05	5.69
3442	3525	2.114670	CCTGGTTGGGCTACATGCG	61.115	63.158	0.00	0.00	44.05	4.73
3443	3526	3.924507	CCTGGTTGGGCTACATGC	58.075	61.111	0.00	0.00	41.94	4.06
3474	3557	3.989787	CAGGCAACCAAACGGGCC	61.990	66.667	0.00	0.00	46.77	5.80
3475	3558	3.989787	CCAGGCAACCAAACGGGC	61.990	66.667	0.00	0.00	42.05	6.13
3476	3559	3.302344	CCCAGGCAACCAAACGGG	61.302	66.667	0.00	0.00	44.81	5.28
3477	3560	3.989787	GCCCAGGCAACCAAACGG	61.990	66.667	3.12	0.00	41.49	4.44
3478	3561	2.912025	AGCCCAGGCAACCAAACG	60.912	61.111	12.03	0.00	44.88	3.60
3479	3562	2.736531	CAGCCCAGGCAACCAAAC	59.263	61.111	12.03	0.00	44.88	2.93
3480	3563	3.233231	GCAGCCCAGGCAACCAAA	61.233	61.111	12.03	0.00	44.88	3.28
3481	3564	3.831727	ATGCAGCCCAGGCAACCAA	62.832	57.895	12.03	0.00	45.60	3.67
3482	3565	4.304413	ATGCAGCCCAGGCAACCA	62.304	61.111	12.03	4.97	45.60	3.67
3483	3566	3.766691	CATGCAGCCCAGGCAACC	61.767	66.667	12.03	0.00	45.60	3.77
3489	3572	3.346631	GAAACCGCATGCAGCCCAG	62.347	63.158	19.57	0.00	41.38	4.45
3490	3573	3.372730	GAAACCGCATGCAGCCCA	61.373	61.111	19.57	0.00	41.38	5.36
3491	3574	3.064324	AGAAACCGCATGCAGCCC	61.064	61.111	19.57	2.23	41.38	5.19
3492	3575	2.180017	CAGAAACCGCATGCAGCC	59.820	61.111	19.57	1.47	41.38	4.85
3493	3576	2.180017	CCAGAAACCGCATGCAGC	59.820	61.111	19.57	1.26	40.87	5.25
3494	3577	2.180017	GCCAGAAACCGCATGCAG	59.820	61.111	19.57	9.32	0.00	4.41
3495	3578	3.372730	GGCCAGAAACCGCATGCA	61.373	61.111	19.57	0.00	0.00	3.96
3496	3579	4.133796	GGGCCAGAAACCGCATGC	62.134	66.667	7.91	7.91	0.00	4.06
3497	3580	3.814268	CGGGCCAGAAACCGCATG	61.814	66.667	4.39	0.00	43.96	4.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.