AutoCloner

Multiple sequence alignment - TraesCS3D01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G278900	chr3D	100.000	2627	0	0	1	2627	386441591	386438965	0.000000e+00	4852.0
1	TraesCS3D01G278900	chr3D	94.539	293	15	1	107	398	21901413	21901705	3.990000e-123	451.0
2	TraesCS3D01G278900	chr3D	85.806	155	12	4	1778	1925	549066796	549066947	3.500000e-34	156.0
3	TraesCS3D01G278900	chr3D	92.063	63	5	0	8	70	448979614	448979552	3.600000e-14	89.8
4	TraesCS3D01G278900	chr3B	91.721	1981	88	24	1	1968	502647937	502646020	0.000000e+00	2680.0
5	TraesCS3D01G278900	chr3B	89.739	575	35	9	1952	2503	502646008	502645435	0.000000e+00	713.0
6	TraesCS3D01G278900	chr3B	94.881	293	14	1	107	398	201510452	201510744	8.570000e-125	457.0
7	TraesCS3D01G278900	chr3B	85.000	160	13	7	1773	1925	604819987	604820142	4.530000e-33	152.0
8	TraesCS3D01G278900	chr3A	86.562	1146	63	31	1389	2482	508169192	508168086	0.000000e+00	1179.0
9	TraesCS3D01G278900	chr3A	97.671	601	14	0	833	1433	508174438	508173838	0.000000e+00	1033.0
10	TraesCS3D01G278900	chr3A	87.788	565	61	4	84	647	508175495	508174938	0.000000e+00	654.0
11	TraesCS3D01G278900	chr3A	87.634	558	36	15	1474	2017	508173845	508173307	3.710000e-173	617.0
12	TraesCS3D01G278900	chr3A	89.147	129	1	3	2501	2627	508167653	508167536	5.860000e-32	148.0
13	TraesCS3D01G278900	chr3A	94.915	59	3	0	8	66	145264447	145264505	2.780000e-15	93.5
14	TraesCS3D01G278900	chr3A	97.059	34	1	0	1397	1430	508169214	508169181	1.020000e-04	58.4
15	TraesCS3D01G278900	chr1D	94.539	293	15	1	107	398	254495334	254495626	3.990000e-123	451.0
16	TraesCS3D01G278900	chr1D	94.198	293	16	1	107	398	483917279	483916987	1.860000e-121	446.0
17	TraesCS3D01G278900	chr7B	94.198	293	16	1	107	398	593932041	593932333	1.860000e-121	446.0
18	TraesCS3D01G278900	chr7B	84.118	170	15	8	1773	1934	11657410	11657575	1.260000e-33	154.0
19	TraesCS3D01G278900	chr7B	77.154	267	50	8	1154	1416	372008285	372008544	7.580000e-31	145.0
20	TraesCS3D01G278900	chr5D	94.198	293	16	1	107	398	240135029	240135321	1.860000e-121	446.0
21	TraesCS3D01G278900	chr5D	94.198	293	16	1	107	398	449151830	449151538	1.860000e-121	446.0
22	TraesCS3D01G278900	chr2D	83.158	190	16	11	1763	1940	571078948	571079133	2.710000e-35	159.0
23	TraesCS3D01G278900	chr7D	84.211	171	13	10	1773	1934	69393255	69393420	1.260000e-33	154.0
24	TraesCS3D01G278900	chr7D	75.564	266	55	7	1154	1416	376941261	376941519	3.550000e-24	122.0
25	TraesCS3D01G278900	chr7D	92.857	70	5	0	1	70	308662259	308662190	4.630000e-18	102.0
26	TraesCS3D01G278900	chr7D	92.424	66	5	0	5	70	564907794	564907859	7.740000e-16	95.3
27	TraesCS3D01G278900	chr4D	83.721	172	18	3	1773	1937	117421352	117421184	1.260000e-33	154.0
28	TraesCS3D01G278900	chr7A	77.444	266	51	6	1154	1416	424534831	424535090	1.630000e-32	150.0
29	TraesCS3D01G278900	chr7A	82.659	173	19	8	1767	1932	578994129	578994297	2.730000e-30	143.0
30	TraesCS3D01G278900	chr6D	84.242	165	13	6	1772	1927	438321896	438321736	5.860000e-32	148.0
31	TraesCS3D01G278900	chr1A	83.432	169	18	4	1764	1925	14256255	14256090	5.860000e-32	148.0
32	TraesCS3D01G278900	chr5B	83.333	126	18	2	1154	1279	6869542	6869664	2.140000e-21	113.0
33	TraesCS3D01G278900	chr6A	89.610	77	6	2	1	76	549728884	549728809	2.150000e-16	97.1
34	TraesCS3D01G278900	chr2A	92.063	63	5	0	8	70	398570846	398570908	3.600000e-14	89.8
35	TraesCS3D01G278900	chr2A	90.323	62	6	0	9	70	398570944	398571005	6.030000e-12	82.4
36	TraesCS3D01G278900	chr2A	89.231	65	7	0	9	73	398759871	398759807	6.030000e-12	82.4
37	TraesCS3D01G278900	chr2B	91.111	45	0	4	2574	2615	8936888	8936845	1.020000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G278900	chr3D	386438965	386441591	2626	True	4852.0	4852	100.000000	1	2627	1	chr3D.!!$R1	2626
1	TraesCS3D01G278900	chr3B	502645435	502647937	2502	True	1696.5	2680	90.730000	1	2503	2	chr3B.!!$R1	2502
2	TraesCS3D01G278900	chr3A	508173307	508175495	2188	True	768.0	1033	91.031000	84	2017	3	chr3A.!!$R2	1933
3	TraesCS3D01G278900	chr3A	508167536	508169214	1678	True	461.8	1179	90.922667	1389	2627	3	chr3A.!!$R1	1238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
921	1267	0.17897	ATATACGGCCGAGACCCAGT	60.179	55.0	35.9	9.38	0.0	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2416	2854	1.227205	GAGTGATCCTGGCTCGCAG	60.227	63.158	13.04	0.0	0.0	5.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	1.374505	GTGCGCCCTGTACGGTTAA	60.375	57.895	4.18	0.00	0.00	2.01
43	44	0.854705	CGGTTAACGCTATAACGGGC	59.145	55.000	0.01	0.00	36.78	6.13
71	72	1.226575	GCCGTTTAGGATTTGCCGC	60.227	57.895	0.00	0.00	45.00	6.53
82	83	4.223800	TTGCCGCTCTGCAATAGG	57.776	55.556	1.61	0.00	45.77	2.57
126	127	3.325425	TCAGTGGGTTCCATCGTTTCTAA	59.675	43.478	0.00	0.00	35.28	2.10
164	165	2.504175	GTGAGGCCCTCTTTATACACCA	59.496	50.000	12.94	0.00	0.00	4.17
165	166	3.136626	GTGAGGCCCTCTTTATACACCAT	59.863	47.826	12.94	0.00	0.00	3.55
181	182	5.450818	ACACCATAGCCCTTTCTTTCATA	57.549	39.130	0.00	0.00	0.00	2.15
245	246	9.425577	GCTCTACCAATCCATTATAGAGTAAAC	57.574	37.037	15.09	3.03	37.24	2.01
335	337	4.374399	TGACCTGTTAGTCCGTTCTTTTC	58.626	43.478	0.00	0.00	35.83	2.29
352	354	8.450964	CGTTCTTTTCAGATAAAGGAGCATAAA	58.549	33.333	0.00	0.00	36.12	1.40
420	422	3.120468	TCATCCATGGAGTCAAGGAGA	57.880	47.619	21.33	4.93	43.05	3.71
473	475	5.460419	CGAAGCTATGTATCTTGTTGAGGAC	59.540	44.000	0.00	0.00	0.00	3.85
502	504	7.328493	GCTACTTCAAAATTTTATTGTCGCCTT	59.672	33.333	2.44	0.00	0.00	4.35
547	549	4.003648	GACATTGAGAAGGGAACGAACAT	58.996	43.478	0.00	0.00	0.00	2.71
581	583	4.095483	CACATTATCAAGGAGGTCAAGCAC	59.905	45.833	0.00	0.00	0.00	4.40
615	617	9.504710	CAAACTTCAATTGCAAATTCATTTTCA	57.495	25.926	1.71	0.00	0.00	2.69
671	1005	9.308318	AGACTAGCTAAATTTTCGAATTCTCTC	57.692	33.333	0.00	0.00	0.00	3.20
682	1016	0.390860	AATTCTCTCGATGAGGGGCG	59.609	55.000	10.65	0.00	42.86	6.13
700	1038	2.223711	GGCGTCATGTTTGGTTTCAACT	60.224	45.455	0.00	0.00	31.78	3.16
704	1042	4.359706	GTCATGTTTGGTTTCAACTCCAC	58.640	43.478	0.00	0.00	33.12	4.02
921	1267	0.178970	ATATACGGCCGAGACCCAGT	60.179	55.000	35.90	9.38	0.00	4.00
1488	1834	3.006133	TGGCAGGTGATGGGCGTA	61.006	61.111	0.00	0.00	0.00	4.42
1752	2103	6.033966	GGTGTTGGAACTTGAAACTTTACAG	58.966	40.000	0.00	0.00	0.00	2.74
1753	2104	6.127842	GGTGTTGGAACTTGAAACTTTACAGA	60.128	38.462	0.00	0.00	0.00	3.41
1754	2105	7.309920	GTGTTGGAACTTGAAACTTTACAGAA	58.690	34.615	0.00	0.00	0.00	3.02
1755	2106	7.272731	GTGTTGGAACTTGAAACTTTACAGAAC	59.727	37.037	0.00	0.00	0.00	3.01
1756	2107	7.175990	TGTTGGAACTTGAAACTTTACAGAACT	59.824	33.333	0.00	0.00	0.00	3.01
1757	2108	7.696992	TGGAACTTGAAACTTTACAGAACTT	57.303	32.000	0.00	0.00	0.00	2.66
1758	2109	7.535139	TGGAACTTGAAACTTTACAGAACTTG	58.465	34.615	0.00	0.00	0.00	3.16
1759	2110	7.392113	TGGAACTTGAAACTTTACAGAACTTGA	59.608	33.333	0.00	0.00	0.00	3.02
1760	2111	8.241367	GGAACTTGAAACTTTACAGAACTTGAA	58.759	33.333	0.00	0.00	0.00	2.69
1761	2112	9.620660	GAACTTGAAACTTTACAGAACTTGAAA	57.379	29.630	0.00	0.00	0.00	2.69
1762	2113	8.965986	ACTTGAAACTTTACAGAACTTGAAAC	57.034	30.769	0.00	0.00	0.00	2.78
1763	2114	8.793592	ACTTGAAACTTTACAGAACTTGAAACT	58.206	29.630	0.00	0.00	0.00	2.66
1764	2115	9.626045	CTTGAAACTTTACAGAACTTGAAACTT	57.374	29.630	0.00	0.00	0.00	2.66
1765	2116	9.974980	TTGAAACTTTACAGAACTTGAAACTTT	57.025	25.926	0.00	0.00	0.00	2.66
1837	2194	9.343103	CAATATGAACTACATACGGATAGACAC	57.657	37.037	0.00	0.00	43.12	3.67
1925	2282	7.909485	AGTTCTTATATTTAGGAACGGAGGA	57.091	36.000	10.89	0.00	44.74	3.71
1932	2298	3.744940	TTAGGAACGGAGGAGGTAGAA	57.255	47.619	0.00	0.00	0.00	2.10
2014	2412	7.524717	AAAAAGCTAGTGTTACATGAACCAT	57.475	32.000	0.00	0.00	37.22	3.55
2017	2415	6.546428	AGCTAGTGTTACATGAACCATAGT	57.454	37.500	0.00	0.00	37.22	2.12
2018	2416	7.655521	AGCTAGTGTTACATGAACCATAGTA	57.344	36.000	0.00	0.00	37.22	1.82
2019	2417	7.717568	AGCTAGTGTTACATGAACCATAGTAG	58.282	38.462	0.00	2.92	37.22	2.57
2020	2418	6.924060	GCTAGTGTTACATGAACCATAGTAGG	59.076	42.308	0.00	0.00	37.22	3.18
2021	2419	6.869206	AGTGTTACATGAACCATAGTAGGT	57.131	37.500	0.00	0.00	45.91	3.08
2102	2516	6.695713	TCCGTAACTCATATTTTCATGTCTCG	59.304	38.462	0.00	0.00	0.00	4.04
2168	2582	2.039084	ACCGCCTCTCTCATTTTTCAGT	59.961	45.455	0.00	0.00	0.00	3.41
2175	2589	6.860539	GCCTCTCTCATTTTTCAGTCTTTTTC	59.139	38.462	0.00	0.00	0.00	2.29
2177	2592	7.254932	CCTCTCTCATTTTTCAGTCTTTTTCGT	60.255	37.037	0.00	0.00	0.00	3.85
2252	2669	5.047306	TCTCTTGAAATAGACTTTCGCCTCA	60.047	40.000	0.00	0.00	0.00	3.86
2361	2798	3.888930	ACACACACAAATCCCCTTAACAG	59.111	43.478	0.00	0.00	0.00	3.16
2382	2820	0.810648	GCAATTCATCACCGCCTTCA	59.189	50.000	0.00	0.00	0.00	3.02
2400	2838	1.675641	AAGTCCATCAAGCGCACCC	60.676	57.895	11.47	0.00	0.00	4.61
2434	2872	1.227205	CTGCGAGCCAGGATCACTC	60.227	63.158	5.34	0.00	37.93	3.51
2438	2876	1.607801	CGAGCCAGGATCACTCACCA	61.608	60.000	5.34	0.00	0.00	4.17
2544	3396	4.078516	GCCTACGCCTTGGACGGT	62.079	66.667	7.97	0.00	34.00	4.83
2545	3397	2.660802	CCTACGCCTTGGACGGTT	59.339	61.111	7.97	0.00	34.00	4.44
2546	3398	1.004200	CCTACGCCTTGGACGGTTT	60.004	57.895	7.97	0.00	34.00	3.27
2547	3399	1.017701	CCTACGCCTTGGACGGTTTC	61.018	60.000	7.97	0.00	34.00	2.78
2548	3400	0.320073	CTACGCCTTGGACGGTTTCA	60.320	55.000	7.97	0.00	34.00	2.69
2549	3401	0.106335	TACGCCTTGGACGGTTTCAA	59.894	50.000	7.97	0.00	34.00	2.69
2550	3402	0.748729	ACGCCTTGGACGGTTTCAAA	60.749	50.000	7.97	0.00	34.00	2.69
2551	3403	0.040425	CGCCTTGGACGGTTTCAAAG	60.040	55.000	0.00	0.00	35.21	2.77
2552	3404	1.029681	GCCTTGGACGGTTTCAAAGT	58.970	50.000	0.00	0.00	33.70	2.66
2553	3405	1.407618	GCCTTGGACGGTTTCAAAGTT	59.592	47.619	0.00	0.00	33.70	2.66
2554	3406	2.543031	GCCTTGGACGGTTTCAAAGTTC	60.543	50.000	0.00	0.00	33.70	3.01
2603	3455	8.558973	AGTTGAAATATGGACTTCTCTCTTTG	57.441	34.615	0.00	0.00	0.00	2.77
2604	3456	8.378565	AGTTGAAATATGGACTTCTCTCTTTGA	58.621	33.333	0.00	0.00	0.00	2.69
2605	3457	8.663911	GTTGAAATATGGACTTCTCTCTTTGAG	58.336	37.037	0.00	0.00	43.96	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	72	1.869774	TGCATACGCCTATTGCAGAG	58.130	50.000	0.00	0.00	41.33	3.35
79	80	2.232696	TCTGTGTTTCTGCATACGCCTA	59.767	45.455	0.00	0.00	37.32	3.93
82	83	1.201812	CGTCTGTGTTTCTGCATACGC	60.202	52.381	0.00	0.00	39.24	4.42
181	182	8.331730	ACTATACAAGTTCGCAATACCTTTTT	57.668	30.769	0.00	0.00	33.35	1.94
420	422	2.208431	GATCGCTTCTAGCACTGCAAT	58.792	47.619	3.30	0.00	42.58	3.56
443	445	3.710326	AGATACATAGCTTCGCGACAA	57.290	42.857	9.15	0.00	0.00	3.18
473	475	8.155923	GCGACAATAAAATTTTGAAGTAGCAAG	58.844	33.333	13.76	0.00	0.00	4.01
497	499	0.435008	CTTGTTTCGAGTCGAAGGCG	59.565	55.000	25.52	13.13	46.43	5.52
502	504	3.918591	GCTTATCACTTGTTTCGAGTCGA	59.081	43.478	12.09	12.09	0.00	4.20
547	549	7.202093	CCTCCTTGATAATGTGTCCATAGGTAA	60.202	40.741	0.00	0.00	0.00	2.85
581	583	4.552355	TGCAATTGAAGTTTGATGCTCAG	58.448	39.130	10.34	0.00	34.97	3.35
615	617	1.525077	TGTTCGTTGCTCGGCCTTT	60.525	52.632	0.00	0.00	40.32	3.11
671	1005	0.744414	AAACATGACGCCCCTCATCG	60.744	55.000	0.00	0.00	0.00	3.84
682	1016	4.359706	GTGGAGTTGAAACCAAACATGAC	58.640	43.478	0.00	0.00	37.94	3.06
760	1098	7.381408	CGATGCGTCTGTTCTTTTTAGGATATA	59.619	37.037	4.05	0.00	0.00	0.86
761	1099	6.201044	CGATGCGTCTGTTCTTTTTAGGATAT	59.799	38.462	4.05	0.00	0.00	1.63
762	1100	5.518847	CGATGCGTCTGTTCTTTTTAGGATA	59.481	40.000	4.05	0.00	0.00	2.59
763	1101	4.330074	CGATGCGTCTGTTCTTTTTAGGAT	59.670	41.667	4.05	0.00	0.00	3.24
764	1102	3.678072	CGATGCGTCTGTTCTTTTTAGGA	59.322	43.478	4.05	0.00	0.00	2.94
765	1103	3.432252	ACGATGCGTCTGTTCTTTTTAGG	59.568	43.478	4.05	0.00	33.69	2.69
766	1104	4.647291	ACGATGCGTCTGTTCTTTTTAG	57.353	40.909	4.05	0.00	33.69	1.85
856	1202	7.462856	GCGTCTGTTTTTCTTTTCCTTTTCTTC	60.463	37.037	0.00	0.00	0.00	2.87
921	1267	9.035890	TCAGAAATCCAGAGTAGATTTGTCTTA	57.964	33.333	3.62	0.00	42.53	2.10
1464	1810	1.293179	CATCACCTGCCACACGAGA	59.707	57.895	0.00	0.00	0.00	4.04
1488	1834	4.028490	TGCGGTTTCTCGGGCCAT	62.028	61.111	4.39	0.00	0.00	4.40
1752	2103	9.880064	GGAAGTATCTTGTAAAGTTTCAAGTTC	57.120	33.333	18.80	15.84	46.34	3.01
1753	2104	9.628500	AGGAAGTATCTTGTAAAGTTTCAAGTT	57.372	29.630	18.80	15.40	46.34	2.66
1754	2105	9.274206	GAGGAAGTATCTTGTAAAGTTTCAAGT	57.726	33.333	18.80	12.76	46.34	3.16
1755	2106	8.722394	GGAGGAAGTATCTTGTAAAGTTTCAAG	58.278	37.037	15.78	15.78	46.34	3.02
1756	2107	7.386848	CGGAGGAAGTATCTTGTAAAGTTTCAA	59.613	37.037	0.00	0.00	46.34	2.69
1757	2108	6.872020	CGGAGGAAGTATCTTGTAAAGTTTCA	59.128	38.462	0.00	0.00	46.34	2.69
1758	2109	6.872547	ACGGAGGAAGTATCTTGTAAAGTTTC	59.127	38.462	0.00	0.00	46.34	2.78
1759	2110	6.766429	ACGGAGGAAGTATCTTGTAAAGTTT	58.234	36.000	0.00	0.00	46.34	2.66
1760	2111	6.356186	ACGGAGGAAGTATCTTGTAAAGTT	57.644	37.500	0.00	0.00	46.34	2.66
1761	2112	5.997384	ACGGAGGAAGTATCTTGTAAAGT	57.003	39.130	0.00	0.00	46.34	2.66
1763	2114	9.558396	TTAAAAACGGAGGAAGTATCTTGTAAA	57.442	29.630	0.00	0.00	0.00	2.01
1764	2115	9.558396	TTTAAAAACGGAGGAAGTATCTTGTAA	57.442	29.630	0.00	0.00	0.00	2.41
1765	2116	9.729281	ATTTAAAAACGGAGGAAGTATCTTGTA	57.271	29.630	0.00	0.00	0.00	2.41
1766	2117	8.631480	ATTTAAAAACGGAGGAAGTATCTTGT	57.369	30.769	0.00	0.00	0.00	3.16
1903	2260	6.842807	ACCTCCTCCGTTCCTAAATATAAGAA	59.157	38.462	0.00	0.00	0.00	2.52
1904	2261	6.379579	ACCTCCTCCGTTCCTAAATATAAGA	58.620	40.000	0.00	0.00	0.00	2.10
1925	2282	7.341256	TCGTTTCACCAGATATACTTTCTACCT	59.659	37.037	0.00	0.00	0.00	3.08
1932	2298	8.786826	TTCAATTCGTTTCACCAGATATACTT	57.213	30.769	0.00	0.00	0.00	2.24
2042	2453	2.151502	TTTTTCACACCTCCCAAGCA	57.848	45.000	0.00	0.00	0.00	3.91
2079	2491	6.199154	AGCGAGACATGAAAATATGAGTTACG	59.801	38.462	0.00	0.00	0.00	3.18
2080	2492	7.470289	AGCGAGACATGAAAATATGAGTTAC	57.530	36.000	0.00	0.00	0.00	2.50
2120	2534	5.233083	TGGGAGCTATGATAAAGGACATG	57.767	43.478	0.00	0.00	0.00	3.21
2168	2582	6.752815	GTGGAAACCAAATGTTACGAAAAAGA	59.247	34.615	0.00	0.00	35.67	2.52
2175	2589	4.277423	AGGAAGTGGAAACCAAATGTTACG	59.723	41.667	0.00	0.00	35.67	3.18
2177	2592	7.235079	TCATAGGAAGTGGAAACCAAATGTTA	58.765	34.615	0.00	0.00	35.67	2.41
2309	2746	3.487942	GGTGCAATTTTTGTTGTACGGTC	59.512	43.478	0.00	0.00	43.04	4.79
2361	2798	2.270297	AAGGCGGTGATGAATTGCGC	62.270	55.000	0.00	0.00	0.00	6.09
2382	2820	1.675641	GGGTGCGCTTGATGGACTT	60.676	57.895	9.73	0.00	0.00	3.01
2416	2854	1.227205	GAGTGATCCTGGCTCGCAG	60.227	63.158	13.04	0.00	0.00	5.18
2544	3396	6.379703	TCAAGAATCAACCCAGAACTTTGAAA	59.620	34.615	0.00	0.00	33.13	2.69
2545	3397	5.890985	TCAAGAATCAACCCAGAACTTTGAA	59.109	36.000	0.00	0.00	33.13	2.69
2546	3398	5.299279	GTCAAGAATCAACCCAGAACTTTGA	59.701	40.000	0.00	0.00	33.89	2.69
2547	3399	5.300286	AGTCAAGAATCAACCCAGAACTTTG	59.700	40.000	0.00	0.00	0.00	2.77
2548	3400	5.449553	AGTCAAGAATCAACCCAGAACTTT	58.550	37.500	0.00	0.00	0.00	2.66
2549	3401	5.053978	AGTCAAGAATCAACCCAGAACTT	57.946	39.130	0.00	0.00	0.00	2.66
2550	3402	4.713792	AGTCAAGAATCAACCCAGAACT	57.286	40.909	0.00	0.00	0.00	3.01
2551	3403	6.655003	TGAATAGTCAAGAATCAACCCAGAAC	59.345	38.462	0.00	0.00	0.00	3.01
2552	3404	6.778821	TGAATAGTCAAGAATCAACCCAGAA	58.221	36.000	0.00	0.00	0.00	3.02
2553	3405	6.213397	TCTGAATAGTCAAGAATCAACCCAGA	59.787	38.462	0.00	0.00	31.88	3.86
2554	3406	6.409704	TCTGAATAGTCAAGAATCAACCCAG	58.590	40.000	0.00	0.00	31.88	4.45
2603	3455	6.500684	TTTTAGATGTTCTGTGCCATTCTC	57.499	37.500	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.