Multiple sequence alignment - TraesCS3D01G278500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G278500 chr3D 100.000 9741 0 0 1 9741 386290505 386300245 0.000000e+00 17989.0
1 TraesCS3D01G278500 chr3D 86.824 296 33 4 2502 2794 175544194 175544486 9.430000e-85 326.0
2 TraesCS3D01G278500 chr3D 99.408 169 1 0 2844 3012 8971808 8971976 3.420000e-79 307.0
3 TraesCS3D01G278500 chr3D 99.398 166 1 0 2843 3008 555217498 555217663 1.590000e-77 302.0
4 TraesCS3D01G278500 chr3B 95.410 6361 168 39 3007 9316 501973929 501980216 0.000000e+00 10015.0
5 TraesCS3D01G278500 chr3B 93.511 2928 100 36 1 2846 501971012 501973931 0.000000e+00 4272.0
6 TraesCS3D01G278500 chr3B 92.045 440 13 9 9303 9741 501980239 501980657 5.030000e-167 599.0
7 TraesCS3D01G278500 chr3B 87.162 296 34 3 2502 2794 254941124 254941418 5.640000e-87 333.0
8 TraesCS3D01G278500 chr3B 83.529 85 10 4 7678 7760 501978645 501978563 1.050000e-09 76.8
9 TraesCS3D01G278500 chr3B 100.000 29 0 0 687 715 63005929 63005901 5.000000e-03 54.7
10 TraesCS3D01G278500 chr3A 97.071 3448 81 8 3007 6441 507759285 507762725 0.000000e+00 5790.0
11 TraesCS3D01G278500 chr3A 90.699 1688 90 26 1 1629 507756327 507758006 0.000000e+00 2185.0
12 TraesCS3D01G278500 chr3A 96.862 1243 29 6 6439 7674 507763652 507764891 0.000000e+00 2071.0
13 TraesCS3D01G278500 chr3A 96.264 1258 32 3 7712 8956 507764890 507766145 0.000000e+00 2049.0
14 TraesCS3D01G278500 chr3A 96.407 1141 35 3 1707 2846 507758152 507759287 0.000000e+00 1875.0
15 TraesCS3D01G278500 chr3A 86.811 417 28 7 9334 9741 507766202 507766600 3.230000e-119 440.0
16 TraesCS3D01G278500 chr3A 89.811 265 21 4 8970 9233 612984647 612984388 1.570000e-87 335.0
17 TraesCS3D01G278500 chr3A 86.054 294 34 5 2502 2792 215957038 215957327 9.500000e-80 309.0
18 TraesCS3D01G278500 chr7B 81.549 607 89 14 2 588 551504053 551504656 6.840000e-131 479.0
19 TraesCS3D01G278500 chr7B 77.311 476 73 25 5335 5805 362529644 362530089 2.100000e-61 248.0
20 TraesCS3D01G278500 chr7B 81.100 291 45 8 8952 9233 638003242 638003531 3.540000e-54 224.0
21 TraesCS3D01G278500 chr7B 83.000 100 3 7 7662 7761 228115919 228115834 2.920000e-10 78.7
22 TraesCS3D01G278500 chr7A 80.546 586 83 20 2 566 593359074 593359649 1.170000e-113 422.0
23 TraesCS3D01G278500 chr7A 80.342 585 88 18 2 566 593251085 593251662 1.510000e-112 418.0
24 TraesCS3D01G278500 chr7A 94.372 231 10 1 9509 9736 211291303 211291533 1.560000e-92 351.0
25 TraesCS3D01G278500 chr7A 80.126 317 55 5 5061 5376 329466141 329466450 7.610000e-56 230.0
26 TraesCS3D01G278500 chr7A 83.838 99 2 7 7662 7760 466945267 466945183 2.250000e-11 82.4
27 TraesCS3D01G278500 chr7A 88.060 67 2 1 7659 7719 411492948 411493014 3.770000e-09 75.0
28 TraesCS3D01G278500 chr4D 78.487 595 97 18 14 583 85855579 85854991 2.590000e-95 361.0
29 TraesCS3D01G278500 chr4D 94.805 231 9 1 9509 9736 123738655 123738425 3.350000e-94 357.0
30 TraesCS3D01G278500 chr4D 93.966 232 10 2 9508 9736 123509158 123508928 2.010000e-91 348.0
31 TraesCS3D01G278500 chr4D 98.235 170 3 0 2843 3012 41411758 41411589 2.060000e-76 298.0
32 TraesCS3D01G278500 chr4D 97.917 48 1 0 6540 6587 100565934 100565981 6.270000e-12 84.2
33 TraesCS3D01G278500 chr4D 97.826 46 1 0 6552 6597 483093719 483093674 8.110000e-11 80.5
34 TraesCS3D01G278500 chr4D 91.071 56 3 1 6542 6597 419251474 419251421 3.770000e-09 75.0
35 TraesCS3D01G278500 chr4D 97.619 42 1 0 6541 6582 111940963 111941004 1.360000e-08 73.1
36 TraesCS3D01G278500 chr4D 100.000 38 0 0 7723 7760 5786200 5786237 4.880000e-08 71.3
37 TraesCS3D01G278500 chr4D 95.455 44 2 0 6541 6584 39405572 39405615 4.880000e-08 71.3
38 TraesCS3D01G278500 chr4D 88.333 60 2 2 7661 7719 5786238 5786183 6.310000e-07 67.6
39 TraesCS3D01G278500 chr4D 97.368 38 1 0 7723 7760 369904221 369904258 2.270000e-06 65.8
40 TraesCS3D01G278500 chr6D 94.372 231 10 1 9509 9736 458963944 458964174 1.560000e-92 351.0
41 TraesCS3D01G278500 chr6D 97.701 174 3 1 2835 3008 48662029 48662201 2.060000e-76 298.0
42 TraesCS3D01G278500 chr6D 98.235 170 3 0 2843 3012 348912830 348912661 2.060000e-76 298.0
43 TraesCS3D01G278500 chr6D 89.855 69 4 3 6532 6600 313153073 313153008 1.740000e-12 86.1
44 TraesCS3D01G278500 chr6D 91.803 61 5 0 1726 1786 346830345 346830405 1.740000e-12 86.1
45 TraesCS3D01G278500 chr6D 97.917 48 1 0 6550 6597 242634280 242634233 6.270000e-12 84.2
46 TraesCS3D01G278500 chr6D 91.667 60 3 1 6544 6603 288470116 288470173 2.250000e-11 82.4
47 TraesCS3D01G278500 chr6D 97.826 46 1 0 6542 6587 177788382 177788427 8.110000e-11 80.5
48 TraesCS3D01G278500 chr6D 91.525 59 4 1 6530 6587 456406358 456406416 8.110000e-11 80.5
49 TraesCS3D01G278500 chr6D 97.778 45 1 0 6543 6587 78083164 78083120 2.920000e-10 78.7
50 TraesCS3D01G278500 chr6D 82.000 100 4 7 7662 7761 106837916 106837831 1.360000e-08 73.1
51 TraesCS3D01G278500 chr6D 90.909 55 3 2 6530 6584 325386234 325386286 1.360000e-08 73.1
52 TraesCS3D01G278500 chr6D 100.000 38 0 0 7723 7760 87467559 87467522 4.880000e-08 71.3
53 TraesCS3D01G278500 chr6D 97.368 38 1 0 7723 7760 396447981 396447944 2.270000e-06 65.8
54 TraesCS3D01G278500 chr1D 94.372 231 10 1 9509 9736 212468864 212468634 1.560000e-92 351.0
55 TraesCS3D01G278500 chr1D 96.552 58 1 1 7662 7719 325490295 325490351 2.900000e-15 95.3
56 TraesCS3D01G278500 chr1D 82.000 100 4 7 7662 7761 103683585 103683500 1.360000e-08 73.1
57 TraesCS3D01G278500 chr1D 95.556 45 0 2 7717 7760 325490324 325490367 4.880000e-08 71.3
58 TraesCS3D01G278500 chr1D 93.750 48 1 2 9291 9336 379488080 379488127 4.880000e-08 71.3
59 TraesCS3D01G278500 chr1D 93.750 48 1 2 9291 9336 379488929 379488976 4.880000e-08 71.3
60 TraesCS3D01G278500 chr1D 100.000 36 0 0 7662 7697 103683501 103683536 6.310000e-07 67.6
61 TraesCS3D01G278500 chr1D 87.273 55 5 2 9283 9335 367413235 367413181 2.940000e-05 62.1
62 TraesCS3D01G278500 chr2D 87.540 313 23 5 2467 2779 649143901 649143605 2.010000e-91 348.0
63 TraesCS3D01G278500 chr2D 98.824 170 2 0 2843 3012 445508131 445507962 4.420000e-78 303.0
64 TraesCS3D01G278500 chr2D 83.824 272 39 5 8963 9233 302261334 302261601 4.520000e-63 254.0
65 TraesCS3D01G278500 chr2D 73.350 409 78 20 196 583 124799256 124799654 1.330000e-23 122.0
66 TraesCS3D01G278500 chr2D 98.077 52 1 0 6547 6598 474500931 474500880 3.750000e-14 91.6
67 TraesCS3D01G278500 chr2D 93.443 61 3 1 6544 6603 310302081 310302141 1.350000e-13 89.8
68 TraesCS3D01G278500 chr2D 100.000 40 0 0 7724 7763 625151925 625151964 3.770000e-09 75.0
69 TraesCS3D01G278500 chrUn 93.939 231 11 1 9509 9736 86477933 86478163 7.240000e-91 346.0
70 TraesCS3D01G278500 chrUn 93.939 231 11 1 9509 9736 186192421 186192191 7.240000e-91 346.0
71 TraesCS3D01G278500 chrUn 93.939 231 11 1 9509 9736 221549423 221549193 7.240000e-91 346.0
72 TraesCS3D01G278500 chrUn 98.824 170 2 0 2843 3012 112721134 112721303 4.420000e-78 303.0
73 TraesCS3D01G278500 chrUn 84.192 291 42 4 8944 9233 50003444 50003731 7.450000e-71 279.0
74 TraesCS3D01G278500 chrUn 97.778 45 1 0 6543 6587 104668807 104668851 2.920000e-10 78.7
75 TraesCS3D01G278500 chrUn 100.000 41 0 0 6547 6587 31861291 31861251 1.050000e-09 76.8
76 TraesCS3D01G278500 chrUn 100.000 41 0 0 6547 6587 65138950 65138910 1.050000e-09 76.8
77 TraesCS3D01G278500 chrUn 100.000 41 0 0 6547 6587 84435462 84435422 1.050000e-09 76.8
78 TraesCS3D01G278500 chrUn 100.000 40 0 0 6547 6586 19086528 19086489 3.770000e-09 75.0
79 TraesCS3D01G278500 chrUn 95.652 46 2 0 6542 6587 68883354 68883309 3.770000e-09 75.0
80 TraesCS3D01G278500 chrUn 100.000 38 0 0 6547 6584 176719709 176719672 4.880000e-08 71.3
81 TraesCS3D01G278500 chrUn 95.455 44 2 0 6544 6587 197752395 197752438 4.880000e-08 71.3
82 TraesCS3D01G278500 chrUn 100.000 29 0 0 687 715 178717922 178717950 5.000000e-03 54.7
83 TraesCS3D01G278500 chrUn 100.000 29 0 0 687 715 196135596 196135568 5.000000e-03 54.7
84 TraesCS3D01G278500 chrUn 100.000 29 0 0 687 715 196163956 196163928 5.000000e-03 54.7
85 TraesCS3D01G278500 chrUn 100.000 29 0 0 687 715 255567056 255567084 5.000000e-03 54.7
86 TraesCS3D01G278500 chr5D 85.494 324 42 4 2474 2794 308629826 308630147 5.640000e-87 333.0
87 TraesCS3D01G278500 chr5D 98.824 170 2 0 2843 3012 396075177 396075008 4.420000e-78 303.0
88 TraesCS3D01G278500 chr5D 87.281 228 26 3 8967 9193 421851874 421852099 3.490000e-64 257.0
89 TraesCS3D01G278500 chr5D 91.379 58 3 2 6530 6587 431293727 431293782 2.920000e-10 78.7
90 TraesCS3D01G278500 chr5D 97.619 42 0 1 7719 7760 29901036 29900996 4.880000e-08 71.3
91 TraesCS3D01G278500 chr5D 84.615 65 8 2 9273 9335 287022613 287022677 8.170000e-06 63.9
92 TraesCS3D01G278500 chr5D 87.273 55 5 2 9283 9335 29498167 29498113 2.940000e-05 62.1
93 TraesCS3D01G278500 chr4A 98.817 169 2 0 2840 3008 740939728 740939896 1.590000e-77 302.0
94 TraesCS3D01G278500 chr4A 89.394 66 5 1 6542 6605 546207937 546208002 2.250000e-11 82.4
95 TraesCS3D01G278500 chr2B 76.006 621 120 20 7 604 758142959 758142345 2.660000e-75 294.0
96 TraesCS3D01G278500 chr2B 80.932 236 38 6 5061 5294 606867250 606867480 7.770000e-41 180.0
97 TraesCS3D01G278500 chr2B 95.556 45 1 1 7723 7766 507827125 507827169 4.880000e-08 71.3
98 TraesCS3D01G278500 chr2B 97.368 38 1 0 7660 7697 174395563 174395600 2.270000e-06 65.8
99 TraesCS3D01G278500 chr1B 76.230 610 111 22 1 587 430624812 430624214 9.570000e-75 292.0
100 TraesCS3D01G278500 chr1B 84.307 274 36 6 8963 9233 217292065 217291796 2.700000e-65 261.0
101 TraesCS3D01G278500 chr1B 82.000 300 33 9 2467 2758 117173146 117173432 1.640000e-57 235.0
102 TraesCS3D01G278500 chr1B 81.100 291 45 7 8952 9233 116277551 116277840 3.540000e-54 224.0
103 TraesCS3D01G278500 chr1B 97.500 40 1 0 7723 7762 314739118 314739079 1.760000e-07 69.4
104 TraesCS3D01G278500 chr1B 80.000 90 17 1 1969 2058 664789303 664789215 2.270000e-06 65.8
105 TraesCS3D01G278500 chr6A 76.599 594 96 25 5 587 600539914 600539353 4.450000e-73 287.0
106 TraesCS3D01G278500 chr6A 89.189 74 8 0 1726 1799 496624407 496624334 1.040000e-14 93.5
107 TraesCS3D01G278500 chr6A 92.857 56 2 2 6549 6603 24425213 24425159 8.110000e-11 80.5
108 TraesCS3D01G278500 chr4B 84.783 276 39 2 8963 9237 364681721 364681448 3.470000e-69 274.0
109 TraesCS3D01G278500 chr7D 82.278 316 47 6 5061 5376 290866518 290866824 2.090000e-66 265.0
110 TraesCS3D01G278500 chr7D 80.000 365 46 16 5335 5685 290867081 290867432 2.720000e-60 244.0
111 TraesCS3D01G278500 chr7D 81.890 254 31 10 2547 2794 391584745 391584501 5.970000e-47 200.0
112 TraesCS3D01G278500 chr7D 92.857 70 4 1 1728 1796 529857627 529857558 6.230000e-17 100.0
113 TraesCS3D01G278500 chr7D 87.500 64 2 1 7662 7719 82903946 82903883 1.760000e-07 69.4
114 TraesCS3D01G278500 chr7D 95.238 42 1 1 7723 7763 127000324 127000283 2.270000e-06 65.8
115 TraesCS3D01G278500 chr7D 90.000 50 4 1 542 591 136206286 136206238 8.170000e-06 63.9
116 TraesCS3D01G278500 chr7D 94.595 37 2 0 7661 7697 127000286 127000322 3.800000e-04 58.4
117 TraesCS3D01G278500 chr1A 91.351 185 15 1 2467 2651 73316460 73316643 1.620000e-62 252.0
118 TraesCS3D01G278500 chr1A 97.500 40 1 0 7723 7762 282696295 282696256 1.760000e-07 69.4
119 TraesCS3D01G278500 chr1A 84.058 69 9 2 9277 9343 83819889 83819957 2.270000e-06 65.8
120 TraesCS3D01G278500 chr5B 87.037 216 24 3 2467 2679 703259733 703259947 3.520000e-59 241.0
121 TraesCS3D01G278500 chr5B 85.246 61 7 2 9277 9335 362030891 362030951 2.940000e-05 62.1
122 TraesCS3D01G278500 chr5A 85.714 126 16 1 5564 5687 701891407 701891282 2.210000e-26 132.0
123 TraesCS3D01G278500 chr5A 100.000 36 0 0 7662 7697 430490875 430490840 6.310000e-07 67.6
124 TraesCS3D01G278500 chr6B 88.710 62 5 2 6543 6603 12003725 12003665 3.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G278500 chr3D 386290505 386300245 9740 False 17989.000000 17989 100.000000 1 9741 1 chr3D.!!$F3 9740
1 TraesCS3D01G278500 chr3B 501971012 501980657 9645 False 4962.000000 10015 93.655333 1 9741 3 chr3B.!!$F2 9740
2 TraesCS3D01G278500 chr3A 507756327 507766600 10273 False 2401.666667 5790 94.019000 1 9741 6 chr3A.!!$F2 9740
3 TraesCS3D01G278500 chr7B 551504053 551504656 603 False 479.000000 479 81.549000 2 588 1 chr7B.!!$F2 586
4 TraesCS3D01G278500 chr7A 593359074 593359649 575 False 422.000000 422 80.546000 2 566 1 chr7A.!!$F5 564
5 TraesCS3D01G278500 chr7A 593251085 593251662 577 False 418.000000 418 80.342000 2 566 1 chr7A.!!$F4 564
6 TraesCS3D01G278500 chr4D 85854991 85855579 588 True 361.000000 361 78.487000 14 583 1 chr4D.!!$R3 569
7 TraesCS3D01G278500 chr2B 758142345 758142959 614 True 294.000000 294 76.006000 7 604 1 chr2B.!!$R1 597
8 TraesCS3D01G278500 chr1B 430624214 430624812 598 True 292.000000 292 76.230000 1 587 1 chr1B.!!$R3 586
9 TraesCS3D01G278500 chr6A 600539353 600539914 561 True 287.000000 287 76.599000 5 587 1 chr6A.!!$R3 582
10 TraesCS3D01G278500 chr7D 290866518 290867432 914 False 254.500000 265 81.139000 5061 5685 2 chr7D.!!$F2 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 475 0.396695 CTCTTCGTAGGGCCCCTGTA 60.397 60.000 21.43 0.3 34.61 2.74 F
1215 1315 0.320421 TCAAGCACTGGAGCGGTAAC 60.320 55.000 0.00 0.0 40.15 2.50 F
1564 1674 1.367346 TTAGCCTTGGGTGATGTCCA 58.633 50.000 1.12 0.0 0.00 4.02 F
2906 3137 1.749063 CAGGTGACTACATACGGAGCA 59.251 52.381 0.00 0.0 40.21 4.26 F
2907 3138 2.165641 CAGGTGACTACATACGGAGCAA 59.834 50.000 0.00 0.0 40.21 3.91 F
2908 3139 2.829720 AGGTGACTACATACGGAGCAAA 59.170 45.455 0.00 0.0 40.61 3.68 F
2909 3140 3.259876 AGGTGACTACATACGGAGCAAAA 59.740 43.478 0.00 0.0 40.61 2.44 F
5201 5443 3.181516 CGAAAAGAAGGTGAGTATGCTGC 60.182 47.826 0.00 0.0 0.00 5.25 F
6474 7955 1.594862 CCTTCAAGATCGAATGTCGGC 59.405 52.381 0.00 0.0 40.88 5.54 F
7375 8863 0.461961 CTTCACCCCCTCGAAGCTAG 59.538 60.000 0.00 0.0 32.84 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2246 1.374947 GTAGGGGCACTGTCAAGCA 59.625 57.895 0.00 0.00 0.00 3.91 R
2997 3228 0.179073 CAAGGCATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63 R
2999 3230 0.253044 TGCAAGGCATGTACTCCCTC 59.747 55.000 0.00 0.00 31.71 4.30 R
4811 5053 2.446848 GCTGGCTATGAGGGCTCCA 61.447 63.158 0.00 0.00 0.00 3.86 R
5193 5435 1.135575 GTGAAACAGCTGGCAGCATAC 60.136 52.381 38.09 23.69 45.56 2.39 R
5201 5443 4.391405 AAGAAAAAGGTGAAACAGCTGG 57.609 40.909 19.93 0.00 41.59 4.85 R
5362 5902 8.090214 AGAAAACATGTTGGATGAAATAACAGG 58.910 33.333 12.82 0.00 40.65 4.00 R
6651 8132 1.200020 CGTCACAAGGCCTGGATTTTC 59.800 52.381 16.25 0.00 0.00 2.29 R
7844 9358 0.190815 AACACCCTTGGCCCAGATTT 59.809 50.000 5.14 0.00 0.00 2.17 R
9074 10604 0.172803 CTTGTACTCCTTCCGTCCGG 59.827 60.000 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 0.984995 GGGGACTGAGGTGCTTAAGT 59.015 55.000 4.02 0.00 34.14 2.24
63 66 3.496309 CTTGTGCCCCCTCTGTGCA 62.496 63.158 0.00 0.00 0.00 4.57
68 72 3.721706 CCCCCTCTGTGCAGTCCC 61.722 72.222 0.00 0.00 0.00 4.46
317 324 1.078567 GCAGGCCTCTGACTCCTTG 60.079 63.158 0.00 0.00 43.49 3.61
333 340 6.127083 TGACTCCTTGAAATTCCTTGCTTTTT 60.127 34.615 0.00 0.00 0.00 1.94
364 371 2.104451 CTGGCAGCCAATCTCTAGACAT 59.896 50.000 17.03 0.00 30.80 3.06
386 406 0.469892 TCTCGGGCTCATGCTGGATA 60.470 55.000 0.00 0.00 39.59 2.59
434 475 0.396695 CTCTTCGTAGGGCCCCTGTA 60.397 60.000 21.43 0.30 34.61 2.74
527 577 4.547587 CGGTCGTATTTGCTATGACGTTTC 60.548 45.833 0.00 0.00 44.23 2.78
551 601 4.105754 TGTTGGTTGTATGGATGGTTGA 57.894 40.909 0.00 0.00 0.00 3.18
570 620 6.608002 TGGTTGATTTATTTATAAAGCGGGGT 59.392 34.615 3.94 0.00 40.47 4.95
588 638 4.156008 CGGGGTGAAAACCTATTTTGAGAG 59.844 45.833 0.00 0.00 38.17 3.20
628 678 6.155565 TCGTTTACTCTAAATTCTGGGGATCA 59.844 38.462 0.00 0.00 0.00 2.92
629 679 6.821665 CGTTTACTCTAAATTCTGGGGATCAA 59.178 38.462 0.00 0.00 0.00 2.57
811 899 0.891904 TACTGCGTTTTTGAGGGGGC 60.892 55.000 0.00 0.00 0.00 5.80
1032 1132 3.139029 GATAATCATCGACCGGGCC 57.861 57.895 6.32 0.00 0.00 5.80
1215 1315 0.320421 TCAAGCACTGGAGCGGTAAC 60.320 55.000 0.00 0.00 40.15 2.50
1217 1317 2.436115 GCACTGGAGCGGTAACCC 60.436 66.667 0.00 0.00 0.00 4.11
1367 1470 1.544246 CACGGGGATTTTCTCCAAACC 59.456 52.381 0.00 0.00 46.98 3.27
1419 1522 6.146184 GTGTATGTGAGGATTATCGATGGTTG 59.854 42.308 8.54 0.00 0.00 3.77
1459 1562 1.530655 GGTGACCAAAGGGGGTGTG 60.531 63.158 0.00 0.00 42.53 3.82
1476 1579 2.283617 GTGTGTTATCAGCTGATCTGCG 59.716 50.000 31.92 12.92 42.56 5.18
1477 1580 2.094026 TGTGTTATCAGCTGATCTGCGT 60.094 45.455 31.92 11.54 42.56 5.24
1483 1586 2.881074 TCAGCTGATCTGCGTTTCTAC 58.119 47.619 13.74 0.00 42.56 2.59
1564 1674 1.367346 TTAGCCTTGGGTGATGTCCA 58.633 50.000 1.12 0.00 0.00 4.02
1665 1895 7.387122 CAGTGTGATGAGTGATATTAGGATTGG 59.613 40.741 0.00 0.00 0.00 3.16
1958 2188 4.380531 CTCGGCCTTTGATTATAGAAGCA 58.619 43.478 0.00 0.00 0.00 3.91
1964 2194 7.173218 CGGCCTTTGATTATAGAAGCAAGAATA 59.827 37.037 0.00 0.00 41.68 1.75
1988 2218 4.207165 TGGTTGAAATATTAGCTCCCTGC 58.793 43.478 0.00 0.00 43.29 4.85
2016 2246 3.224007 AACCCGGCTGGCTTGGAAT 62.224 57.895 5.85 0.39 37.83 3.01
2465 2695 2.882761 CACGTCGGTAGAATATCAGGGA 59.117 50.000 0.00 0.00 0.00 4.20
2852 3083 9.569122 TTGCTATTTTACATTTATACTCCCTCC 57.431 33.333 0.00 0.00 0.00 4.30
2853 3084 7.876068 TGCTATTTTACATTTATACTCCCTCCG 59.124 37.037 0.00 0.00 0.00 4.63
2854 3085 7.876582 GCTATTTTACATTTATACTCCCTCCGT 59.123 37.037 0.00 0.00 0.00 4.69
2855 3086 9.774413 CTATTTTACATTTATACTCCCTCCGTT 57.226 33.333 0.00 0.00 0.00 4.44
2856 3087 8.672823 ATTTTACATTTATACTCCCTCCGTTC 57.327 34.615 0.00 0.00 0.00 3.95
2857 3088 4.684484 ACATTTATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
2858 3089 3.390311 ACATTTATACTCCCTCCGTTCCC 59.610 47.826 0.00 0.00 0.00 3.97
2859 3090 2.852714 TTATACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2860 3091 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2861 3092 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2862 3093 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2863 3094 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2864 3095 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2865 3096 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2866 3097 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2867 3098 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2868 3099 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
2869 3100 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
2870 3101 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
2871 3102 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
2872 3103 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
2873 3104 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
2874 3105 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
2875 3106 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
2876 3107 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
2877 3108 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
2878 3109 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
2889 3120 9.883142 ATAAGTCTTTCTAGAGATTTCAACAGG 57.117 33.333 0.00 0.00 29.76 4.00
2890 3121 7.309770 AGTCTTTCTAGAGATTTCAACAGGT 57.690 36.000 0.00 0.00 0.00 4.00
2891 3122 7.158021 AGTCTTTCTAGAGATTTCAACAGGTG 58.842 38.462 0.00 0.00 0.00 4.00
2892 3123 7.015682 AGTCTTTCTAGAGATTTCAACAGGTGA 59.984 37.037 0.00 0.00 0.00 4.02
2893 3124 7.117092 GTCTTTCTAGAGATTTCAACAGGTGAC 59.883 40.741 0.00 0.00 35.39 3.67
2894 3125 6.672266 TTCTAGAGATTTCAACAGGTGACT 57.328 37.500 0.00 0.00 46.44 3.41
2895 3126 7.776618 TTCTAGAGATTTCAACAGGTGACTA 57.223 36.000 0.00 0.00 40.21 2.59
2896 3127 7.159322 TCTAGAGATTTCAACAGGTGACTAC 57.841 40.000 0.00 0.00 40.21 2.73
2897 3128 5.808366 AGAGATTTCAACAGGTGACTACA 57.192 39.130 0.00 0.00 40.21 2.74
2898 3129 6.365970 AGAGATTTCAACAGGTGACTACAT 57.634 37.500 0.00 0.00 40.21 2.29
2899 3130 7.482169 AGAGATTTCAACAGGTGACTACATA 57.518 36.000 0.00 0.00 40.21 2.29
2900 3131 7.324178 AGAGATTTCAACAGGTGACTACATAC 58.676 38.462 0.00 0.00 40.21 2.39
2901 3132 6.100004 AGATTTCAACAGGTGACTACATACG 58.900 40.000 0.00 0.00 40.21 3.06
2902 3133 3.861276 TCAACAGGTGACTACATACGG 57.139 47.619 0.00 0.00 40.21 4.02
2903 3134 3.423749 TCAACAGGTGACTACATACGGA 58.576 45.455 0.00 0.00 40.21 4.69
2904 3135 3.442625 TCAACAGGTGACTACATACGGAG 59.557 47.826 0.00 0.00 40.21 4.63
2905 3136 1.749634 ACAGGTGACTACATACGGAGC 59.250 52.381 0.00 0.00 40.21 4.70
2906 3137 1.749063 CAGGTGACTACATACGGAGCA 59.251 52.381 0.00 0.00 40.21 4.26
2907 3138 2.165641 CAGGTGACTACATACGGAGCAA 59.834 50.000 0.00 0.00 40.21 3.91
2908 3139 2.829720 AGGTGACTACATACGGAGCAAA 59.170 45.455 0.00 0.00 40.61 3.68
2909 3140 3.259876 AGGTGACTACATACGGAGCAAAA 59.740 43.478 0.00 0.00 40.61 2.44
2910 3141 4.081087 AGGTGACTACATACGGAGCAAAAT 60.081 41.667 0.00 0.00 40.61 1.82
2911 3142 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2912 3143 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2913 3144 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2914 3145 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2915 3146 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2916 3147 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2917 3148 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2918 3149 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2919 3150 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2920 3151 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2921 3152 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2922 3153 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2923 3154 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2924 3155 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2925 3156 5.412594 GGAGCAAAATGAGTGAATCTACACA 59.587 40.000 0.00 0.00 42.45 3.72
2926 3157 6.246420 AGCAAAATGAGTGAATCTACACAC 57.754 37.500 0.00 0.00 42.45 3.82
2928 3159 7.161404 AGCAAAATGAGTGAATCTACACACTA 58.839 34.615 0.00 0.00 45.54 2.74
2929 3160 7.661437 AGCAAAATGAGTGAATCTACACACTAA 59.339 33.333 0.00 0.00 45.54 2.24
2930 3161 8.289618 GCAAAATGAGTGAATCTACACACTAAA 58.710 33.333 0.00 0.00 45.54 1.85
2944 3175 9.529325 TCTACACACTAAAATATGTCTACATGC 57.471 33.333 5.85 0.00 37.15 4.06
2945 3176 9.313118 CTACACACTAAAATATGTCTACATGCA 57.687 33.333 5.85 0.00 37.15 3.96
2946 3177 8.737168 ACACACTAAAATATGTCTACATGCAT 57.263 30.769 5.85 0.00 37.15 3.96
2947 3178 8.830580 ACACACTAAAATATGTCTACATGCATC 58.169 33.333 0.00 0.00 37.15 3.91
2948 3179 8.285394 CACACTAAAATATGTCTACATGCATCC 58.715 37.037 0.00 0.00 37.15 3.51
2949 3180 7.171508 ACACTAAAATATGTCTACATGCATCCG 59.828 37.037 0.00 0.00 37.15 4.18
2950 3181 7.171508 CACTAAAATATGTCTACATGCATCCGT 59.828 37.037 0.00 0.00 37.15 4.69
2951 3182 8.364894 ACTAAAATATGTCTACATGCATCCGTA 58.635 33.333 0.00 0.00 37.15 4.02
2952 3183 9.371136 CTAAAATATGTCTACATGCATCCGTAT 57.629 33.333 0.00 0.00 37.15 3.06
2954 3185 9.890629 AAAATATGTCTACATGCATCCGTATAT 57.109 29.630 0.00 0.00 37.15 0.86
2955 3186 9.890629 AAATATGTCTACATGCATCCGTATATT 57.109 29.630 0.00 1.00 37.15 1.28
2963 3194 9.981114 CTACATGCATCCGTATATTATATTCCA 57.019 33.333 0.00 0.00 0.00 3.53
2965 3196 9.851686 ACATGCATCCGTATATTATATTCCATT 57.148 29.630 0.00 0.00 0.00 3.16
2968 3199 9.898152 TGCATCCGTATATTATATTCCATTTGA 57.102 29.630 0.00 0.00 0.00 2.69
2984 3215 9.082313 ATTCCATTTGAAATGTCTACAAAGACT 57.918 29.630 15.93 0.00 43.49 3.24
3001 3232 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3002 3233 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3003 3234 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3004 3235 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3005 3236 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3006 3237 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3007 3238 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3008 3239 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3082 3314 4.931601 CCATATGACATCCATACAGAACGG 59.068 45.833 3.65 0.00 40.29 4.44
3970 4203 6.100668 GTCCTCACTCCTAGTTTTGTATGTC 58.899 44.000 0.00 0.00 0.00 3.06
4655 4897 8.718656 AGGGCTGTTATCATTATTAGAGACTTT 58.281 33.333 0.00 0.00 0.00 2.66
4811 5053 8.244802 GGTCTTATAACATGCATATACGACTCT 58.755 37.037 21.87 0.00 35.99 3.24
5193 5435 5.993106 AGAAGAAACGAAAAGAAGGTGAG 57.007 39.130 0.00 0.00 0.00 3.51
5201 5443 3.181516 CGAAAAGAAGGTGAGTATGCTGC 60.182 47.826 0.00 0.00 0.00 5.25
5362 5902 5.587289 TGAGTACAAATGCAAAGGTTGTTC 58.413 37.500 11.96 8.37 36.83 3.18
5431 5974 2.861147 AAACAGTAGAGAAGGCCACC 57.139 50.000 5.01 0.00 0.00 4.61
5485 6028 8.451908 AACCTAGATCTGCCAAATACAAATAC 57.548 34.615 5.18 0.00 0.00 1.89
5612 6155 8.296799 TGCAAATGTTTGACATGAATTAAGAC 57.703 30.769 9.53 0.00 37.97 3.01
6407 6959 2.147958 GTGCAAAAGTGTATCCGGTCA 58.852 47.619 0.00 0.00 0.00 4.02
6474 7955 1.594862 CCTTCAAGATCGAATGTCGGC 59.405 52.381 0.00 0.00 40.88 5.54
6651 8132 3.627395 TGGCAATGTCAGGTACCTAAG 57.373 47.619 15.80 3.08 0.00 2.18
6810 8291 3.013921 GTCCTTGCAAATCGATGGGTTA 58.986 45.455 0.00 0.00 0.00 2.85
7148 8633 6.004408 TGCGAAGTTTTATTCCCAGTTTAC 57.996 37.500 0.00 0.00 0.00 2.01
7189 8674 5.999205 AAACCATGGCAGTCATTTGAATA 57.001 34.783 13.04 0.00 32.92 1.75
7375 8863 0.461961 CTTCACCCCCTCGAAGCTAG 59.538 60.000 0.00 0.00 32.84 3.42
7526 9015 8.593679 TCATGGACAGTAAGTTTCTTATTCTCA 58.406 33.333 0.00 0.00 0.00 3.27
7578 9067 3.462021 CTTATCTGCTACTCCCAAGCAC 58.538 50.000 0.00 0.00 44.78 4.40
7688 9177 8.778059 ACTACCTCCATTCCAAAATATAAGACA 58.222 33.333 0.00 0.00 0.00 3.41
7772 9286 6.912951 TGGAGGTAGTACTTATAAGATGGC 57.087 41.667 19.38 5.98 0.00 4.40
7844 9358 2.997980 TCATGCCCGCAAAAGAGATAA 58.002 42.857 0.00 0.00 0.00 1.75
8062 9592 9.753674 AGATTCCTAATTTTAATGTCTTGTCCA 57.246 29.630 0.00 0.00 0.00 4.02
8256 9786 6.111382 TCAAGGAGCTGATTACTTGAGAATG 58.889 40.000 9.07 0.00 42.95 2.67
8282 9812 6.253512 TGAACTTATGATCGTCGTGAATTGAG 59.746 38.462 0.00 0.00 0.00 3.02
8354 9884 3.988379 TGTGCCAGTTTTCTAAAGCTG 57.012 42.857 11.14 11.14 43.96 4.24
8373 9903 2.036217 CTGCCTTTCATTTCCACTTGCA 59.964 45.455 0.00 0.00 0.00 4.08
8402 9932 3.306502 CCCAGCAGCAAAATGACTTTGAT 60.307 43.478 0.00 0.00 46.35 2.57
8591 10121 1.813513 CAAGTGGTTCAGCCCTGTAG 58.186 55.000 0.00 0.00 36.04 2.74
8630 10160 1.472878 AGCGAATACGAGTTCTGCTGA 59.527 47.619 15.92 0.00 42.66 4.26
8677 10207 8.258007 CCACCTAGTGATAGAAATTTAGTGTCA 58.742 37.037 0.00 0.00 35.23 3.58
8737 10267 1.996292 AGGACACAATCGTGATCGTG 58.004 50.000 0.00 0.00 46.80 4.35
8858 10388 4.769688 TGATACAGCCAAGGTCACAATAG 58.230 43.478 0.00 0.00 0.00 1.73
8924 10454 6.128117 GCGGACAAAGTTCCAAAGATATAACA 60.128 38.462 0.00 0.00 35.04 2.41
8944 10474 3.003689 ACAATACAGCAAAGCAGACACAC 59.996 43.478 0.00 0.00 0.00 3.82
8949 10479 4.578871 ACAGCAAAGCAGACACACATATA 58.421 39.130 0.00 0.00 0.00 0.86
8950 10480 5.188434 ACAGCAAAGCAGACACACATATAT 58.812 37.500 0.00 0.00 0.00 0.86
8951 10481 5.295292 ACAGCAAAGCAGACACACATATATC 59.705 40.000 0.00 0.00 0.00 1.63
8955 10485 7.881751 AGCAAAGCAGACACACATATATCATAT 59.118 33.333 0.00 0.00 0.00 1.78
8956 10486 7.961283 GCAAAGCAGACACACATATATCATATG 59.039 37.037 0.00 0.00 0.00 1.78
8958 10488 6.944096 AGCAGACACACATATATCATATGCT 58.056 36.000 0.00 0.00 34.50 3.79
8959 10489 6.817140 AGCAGACACACATATATCATATGCTG 59.183 38.462 0.00 6.33 37.70 4.41
8960 10490 6.456584 GCAGACACACATATATCATATGCTGC 60.457 42.308 14.37 14.37 32.92 5.25
8961 10491 6.817140 CAGACACACATATATCATATGCTGCT 59.183 38.462 0.00 0.00 0.00 4.24
8962 10492 7.333672 CAGACACACATATATCATATGCTGCTT 59.666 37.037 0.00 0.00 0.00 3.91
8963 10493 7.548427 AGACACACATATATCATATGCTGCTTC 59.452 37.037 0.00 5.01 0.00 3.86
8965 10495 6.596497 CACACATATATCATATGCTGCTTCCA 59.404 38.462 0.00 0.00 0.00 3.53
8966 10496 7.282450 CACACATATATCATATGCTGCTTCCAT 59.718 37.037 0.00 0.00 0.00 3.41
8967 10497 7.832685 ACACATATATCATATGCTGCTTCCATT 59.167 33.333 0.00 0.00 0.00 3.16
8969 10499 9.334947 ACATATATCATATGCTGCTTCCATTAC 57.665 33.333 0.00 0.00 0.00 1.89
8970 10500 9.557061 CATATATCATATGCTGCTTCCATTACT 57.443 33.333 0.00 0.00 0.00 2.24
8973 10503 9.964354 ATATCATATGCTGCTTCCATTACTAAA 57.036 29.630 0.00 0.00 0.00 1.85
8975 10505 9.964354 ATCATATGCTGCTTCCATTACTAAATA 57.036 29.630 0.00 0.00 0.00 1.40
8976 10506 9.219603 TCATATGCTGCTTCCATTACTAAATAC 57.780 33.333 0.00 0.00 0.00 1.89
8977 10507 9.224267 CATATGCTGCTTCCATTACTAAATACT 57.776 33.333 0.00 0.00 0.00 2.12
8978 10508 7.736447 ATGCTGCTTCCATTACTAAATACTC 57.264 36.000 0.00 0.00 0.00 2.59
8981 10511 6.689177 GCTGCTTCCATTACTAAATACTCCCT 60.689 42.308 0.00 0.00 0.00 4.20
8982 10512 7.208064 TGCTTCCATTACTAAATACTCCCTT 57.792 36.000 0.00 0.00 0.00 3.95
8983 10513 7.054124 TGCTTCCATTACTAAATACTCCCTTG 58.946 38.462 0.00 0.00 0.00 3.61
8984 10514 7.054751 GCTTCCATTACTAAATACTCCCTTGT 58.945 38.462 0.00 0.00 0.00 3.16
8986 10516 7.133133 TCCATTACTAAATACTCCCTTGTCC 57.867 40.000 0.00 0.00 0.00 4.02
8987 10517 5.989777 CCATTACTAAATACTCCCTTGTCCG 59.010 44.000 0.00 0.00 0.00 4.79
8988 10518 6.183360 CCATTACTAAATACTCCCTTGTCCGA 60.183 42.308 0.00 0.00 0.00 4.55
8989 10519 6.855763 TTACTAAATACTCCCTTGTCCGAA 57.144 37.500 0.00 0.00 0.00 4.30
8990 10520 5.750352 ACTAAATACTCCCTTGTCCGAAA 57.250 39.130 0.00 0.00 0.00 3.46
8991 10521 6.117975 ACTAAATACTCCCTTGTCCGAAAA 57.882 37.500 0.00 0.00 0.00 2.29
8992 10522 6.718294 ACTAAATACTCCCTTGTCCGAAAAT 58.282 36.000 0.00 0.00 0.00 1.82
8993 10523 7.854337 ACTAAATACTCCCTTGTCCGAAAATA 58.146 34.615 0.00 0.00 0.00 1.40
8995 10525 5.952347 ATACTCCCTTGTCCGAAAATACT 57.048 39.130 0.00 0.00 0.00 2.12
8996 10526 4.635699 ACTCCCTTGTCCGAAAATACTT 57.364 40.909 0.00 0.00 0.00 2.24
8997 10527 4.324267 ACTCCCTTGTCCGAAAATACTTG 58.676 43.478 0.00 0.00 0.00 3.16
8998 10528 4.202430 ACTCCCTTGTCCGAAAATACTTGT 60.202 41.667 0.00 0.00 0.00 3.16
8999 10529 4.320870 TCCCTTGTCCGAAAATACTTGTC 58.679 43.478 0.00 0.00 0.00 3.18
9000 10530 4.069304 CCCTTGTCCGAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
9001 10531 4.517453 CCCTTGTCCGAAAATACTTGTCAA 59.483 41.667 0.00 0.00 0.00 3.18
9002 10532 5.009210 CCCTTGTCCGAAAATACTTGTCAAA 59.991 40.000 0.00 0.00 0.00 2.69
9003 10533 6.142817 CCTTGTCCGAAAATACTTGTCAAAG 58.857 40.000 0.00 0.00 39.49 2.77
9012 10542 8.853345 CGAAAATACTTGTCAAAGAAATGGATG 58.147 33.333 0.00 0.00 36.84 3.51
9020 10550 9.605275 CTTGTCAAAGAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 35.19 2.43
9021 10551 8.948631 TGTCAAAGAAATGGATGTATCTAGAC 57.051 34.615 0.00 0.00 32.32 2.59
9022 10552 8.539544 TGTCAAAGAAATGGATGTATCTAGACA 58.460 33.333 0.00 0.00 36.03 3.41
9076 10606 7.694388 TTCATTTCTATGACGAGTATTTCCG 57.306 36.000 0.00 0.00 40.42 4.30
9077 10607 6.213677 TCATTTCTATGACGAGTATTTCCGG 58.786 40.000 0.00 0.00 35.87 5.14
9078 10608 5.840243 TTTCTATGACGAGTATTTCCGGA 57.160 39.130 0.00 0.00 0.00 5.14
9090 10620 4.326255 TCCGGACGGAAGGAGTAC 57.674 61.111 11.57 0.00 42.05 2.73
9115 10645 8.037758 ACAAGTCTTTGTAGAGATTCCACTATG 58.962 37.037 0.00 0.00 45.45 2.23
9118 10648 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
9151 10681 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
9173 10703 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
9174 10704 6.593382 AGTGTAGATTCACTCATTTTGCTCTC 59.407 38.462 0.00 0.00 44.07 3.20
9176 10706 6.592994 TGTAGATTCACTCATTTTGCTCTCTG 59.407 38.462 0.00 0.00 0.00 3.35
9177 10707 5.558818 AGATTCACTCATTTTGCTCTCTGT 58.441 37.500 0.00 0.00 0.00 3.41
9178 10708 5.411977 AGATTCACTCATTTTGCTCTCTGTG 59.588 40.000 0.00 0.00 0.00 3.66
9186 10716 3.386768 TTTGCTCTCTGTGTGTAGTCC 57.613 47.619 0.00 0.00 0.00 3.85
9193 10723 4.918588 TCTCTGTGTGTAGTCCATAGTGA 58.081 43.478 0.00 0.00 0.00 3.41
9262 10792 1.866601 GCACCAAATGTTGCTTTGACC 59.133 47.619 0.00 0.00 38.17 4.02
9271 10801 1.186917 TTGCTTTGACCTGCCCATGG 61.187 55.000 4.14 4.14 0.00 3.66
9290 10820 7.059156 CCCATGGAAATTACTCTCTTCATTCT 58.941 38.462 15.22 0.00 0.00 2.40
9336 10903 5.191124 ACTTATTTTGGGACGGAGGAGTAAT 59.809 40.000 0.00 0.00 0.00 1.89
9516 11091 6.031549 CAAACTTAAAAAGGTTTGCTTCCG 57.968 37.500 5.44 0.00 43.30 4.30
9575 11150 6.951062 TGAGTTATGATGAGTGAGGTAGAG 57.049 41.667 0.00 0.00 0.00 2.43
9598 11173 3.042189 CGCATTGTTGAAGAAAGCGAAA 58.958 40.909 17.71 0.00 45.78 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 72 0.739813 GGATGTGAGTCCCCGTTTCG 60.740 60.000 0.00 0.00 31.82 3.46
208 212 3.014856 GCCAGAATAAGCGGCGAC 58.985 61.111 12.98 1.23 35.79 5.19
349 356 3.608241 CGAGACGATGTCTAGAGATTGGC 60.608 52.174 18.77 16.59 43.53 4.52
353 360 2.773487 CCCGAGACGATGTCTAGAGAT 58.227 52.381 1.21 1.21 43.53 2.75
364 371 2.755876 AGCATGAGCCCGAGACGA 60.756 61.111 0.00 0.00 43.56 4.20
386 406 2.178521 CGCGGTAGTCAGAAGCGT 59.821 61.111 0.00 0.00 44.96 5.07
434 475 2.748058 AAAACATCGAGTGGCGCCCT 62.748 55.000 26.77 20.80 40.61 5.19
492 539 0.250381 TACGACCGGGCAAACAACAT 60.250 50.000 8.76 0.00 0.00 2.71
527 577 3.278574 ACCATCCATACAACCAACATCG 58.721 45.455 0.00 0.00 0.00 3.84
551 601 7.982919 GGTTTTCACCCCGCTTTATAAATAAAT 59.017 33.333 0.00 0.00 37.03 1.40
570 620 6.272324 TCCCTCTCTCTCAAAATAGGTTTTCA 59.728 38.462 0.00 0.00 35.41 2.69
588 638 4.883006 AGTAAACGACTGAGTATCCCTCTC 59.117 45.833 0.00 0.00 41.11 3.20
628 678 5.734031 AATCCCTTAGGGCATTTCTAGTT 57.266 39.130 13.54 0.00 43.94 2.24
629 679 5.734031 AAATCCCTTAGGGCATTTCTAGT 57.266 39.130 13.54 0.00 43.94 2.57
687 737 9.610705 TTGATTTGGTTTGATTTGATTTGAAGA 57.389 25.926 0.00 0.00 0.00 2.87
690 740 8.838365 CCTTTGATTTGGTTTGATTTGATTTGA 58.162 29.630 0.00 0.00 0.00 2.69
691 741 8.838365 TCCTTTGATTTGGTTTGATTTGATTTG 58.162 29.630 0.00 0.00 0.00 2.32
692 742 8.977267 TCCTTTGATTTGGTTTGATTTGATTT 57.023 26.923 0.00 0.00 0.00 2.17
693 743 7.662669 CCTCCTTTGATTTGGTTTGATTTGATT 59.337 33.333 0.00 0.00 0.00 2.57
694 744 7.163441 CCTCCTTTGATTTGGTTTGATTTGAT 58.837 34.615 0.00 0.00 0.00 2.57
695 745 6.523840 CCTCCTTTGATTTGGTTTGATTTGA 58.476 36.000 0.00 0.00 0.00 2.69
705 775 0.527565 CGTGGCCTCCTTTGATTTGG 59.472 55.000 3.32 0.00 0.00 3.28
811 899 0.870393 ATATGCTGCCGCTTCAATCG 59.130 50.000 0.70 0.00 36.97 3.34
1032 1132 1.815421 CGAGTCGAGGGGCATTTGG 60.815 63.158 6.73 0.00 0.00 3.28
1215 1315 1.152368 AGGTACGGATAGGGTCGGG 59.848 63.158 0.00 0.00 0.00 5.14
1217 1317 0.950116 GTCAGGTACGGATAGGGTCG 59.050 60.000 0.00 0.00 33.60 4.79
1367 1470 3.572196 ATTGGGGCAAAAGCACGCG 62.572 57.895 3.53 3.53 0.00 6.01
1419 1522 1.786579 GCGATTTCACCTTTGCAACAC 59.213 47.619 0.00 0.00 0.00 3.32
1476 1579 3.255149 TCCTGTCACGAAGAGGTAGAAAC 59.745 47.826 0.00 0.00 0.00 2.78
1477 1580 3.493334 TCCTGTCACGAAGAGGTAGAAA 58.507 45.455 0.00 0.00 0.00 2.52
1483 1586 2.802816 CAAACTTCCTGTCACGAAGAGG 59.197 50.000 15.80 0.00 39.29 3.69
1681 1911 7.197703 AGTAAACTACAAACCCAAATTTGACG 58.802 34.615 19.86 11.15 41.28 4.35
1964 2194 5.302823 GCAGGGAGCTAATATTTCAACCAAT 59.697 40.000 0.00 0.00 41.15 3.16
1966 2196 4.207165 GCAGGGAGCTAATATTTCAACCA 58.793 43.478 0.00 0.00 41.15 3.67
2016 2246 1.374947 GTAGGGGCACTGTCAAGCA 59.625 57.895 0.00 0.00 0.00 3.91
2231 2461 1.513858 AGGACGGCCCAATAATACCA 58.486 50.000 1.76 0.00 37.41 3.25
2846 3077 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
2847 3078 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
2848 3079 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
2849 3080 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
2850 3081 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
2851 3082 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2852 3083 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
2863 3094 9.883142 CCTGTTGAAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
2864 3095 8.871125 ACCTGTTGAAATCTCTAGAAAGACTTA 58.129 33.333 0.00 0.00 0.00 2.24
2865 3096 7.659390 CACCTGTTGAAATCTCTAGAAAGACTT 59.341 37.037 0.00 0.00 0.00 3.01
2866 3097 7.015682 TCACCTGTTGAAATCTCTAGAAAGACT 59.984 37.037 0.00 0.00 0.00 3.24
2867 3098 7.117092 GTCACCTGTTGAAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 35.39 3.01
2868 3099 7.015682 AGTCACCTGTTGAAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 35.39 2.52
2869 3100 7.158021 AGTCACCTGTTGAAATCTCTAGAAAG 58.842 38.462 0.00 0.00 35.39 2.62
2870 3101 7.067496 AGTCACCTGTTGAAATCTCTAGAAA 57.933 36.000 0.00 0.00 35.39 2.52
2871 3102 6.672266 AGTCACCTGTTGAAATCTCTAGAA 57.328 37.500 0.00 0.00 35.39 2.10
2872 3103 6.719829 TGTAGTCACCTGTTGAAATCTCTAGA 59.280 38.462 0.00 0.00 35.39 2.43
2873 3104 6.925211 TGTAGTCACCTGTTGAAATCTCTAG 58.075 40.000 0.00 0.00 35.39 2.43
2874 3105 6.911250 TGTAGTCACCTGTTGAAATCTCTA 57.089 37.500 0.00 0.00 35.39 2.43
2875 3106 5.808366 TGTAGTCACCTGTTGAAATCTCT 57.192 39.130 0.00 0.00 35.39 3.10
2876 3107 6.253727 CGTATGTAGTCACCTGTTGAAATCTC 59.746 42.308 0.00 0.00 35.39 2.75
2877 3108 6.100004 CGTATGTAGTCACCTGTTGAAATCT 58.900 40.000 0.00 0.00 35.39 2.40
2878 3109 5.291128 CCGTATGTAGTCACCTGTTGAAATC 59.709 44.000 0.00 0.00 35.39 2.17
2879 3110 5.046878 TCCGTATGTAGTCACCTGTTGAAAT 60.047 40.000 0.00 0.00 35.39 2.17
2880 3111 4.281435 TCCGTATGTAGTCACCTGTTGAAA 59.719 41.667 0.00 0.00 35.39 2.69
2881 3112 3.827876 TCCGTATGTAGTCACCTGTTGAA 59.172 43.478 0.00 0.00 35.39 2.69
2882 3113 3.423749 TCCGTATGTAGTCACCTGTTGA 58.576 45.455 0.00 0.00 0.00 3.18
2883 3114 3.770666 CTCCGTATGTAGTCACCTGTTG 58.229 50.000 0.00 0.00 0.00 3.33
2884 3115 2.165845 GCTCCGTATGTAGTCACCTGTT 59.834 50.000 0.00 0.00 0.00 3.16
2885 3116 1.749634 GCTCCGTATGTAGTCACCTGT 59.250 52.381 0.00 0.00 0.00 4.00
2886 3117 1.749063 TGCTCCGTATGTAGTCACCTG 59.251 52.381 0.00 0.00 0.00 4.00
2887 3118 2.139323 TGCTCCGTATGTAGTCACCT 57.861 50.000 0.00 0.00 0.00 4.00
2888 3119 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
2889 3120 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2890 3121 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2891 3122 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2892 3123 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2893 3124 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2894 3125 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2895 3126 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2896 3127 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2897 3128 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2898 3129 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2899 3130 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2900 3131 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2901 3132 5.412594 TGTGTAGATTCACTCATTTTGCTCC 59.587 40.000 0.00 0.00 38.90 4.70
2902 3133 6.148480 AGTGTGTAGATTCACTCATTTTGCTC 59.852 38.462 0.00 0.00 40.28 4.26
2903 3134 6.000219 AGTGTGTAGATTCACTCATTTTGCT 59.000 36.000 0.00 0.00 40.28 3.91
2904 3135 6.246420 AGTGTGTAGATTCACTCATTTTGC 57.754 37.500 0.00 0.00 40.28 3.68
2918 3149 9.529325 GCATGTAGACATATTTTAGTGTGTAGA 57.471 33.333 0.00 0.00 34.26 2.59
2919 3150 9.313118 TGCATGTAGACATATTTTAGTGTGTAG 57.687 33.333 0.00 0.00 34.26 2.74
2920 3151 9.830975 ATGCATGTAGACATATTTTAGTGTGTA 57.169 29.630 0.00 0.00 34.26 2.90
2921 3152 8.737168 ATGCATGTAGACATATTTTAGTGTGT 57.263 30.769 0.00 0.00 34.26 3.72
2922 3153 8.285394 GGATGCATGTAGACATATTTTAGTGTG 58.715 37.037 2.46 0.00 34.26 3.82
2923 3154 7.171508 CGGATGCATGTAGACATATTTTAGTGT 59.828 37.037 2.46 0.00 34.26 3.55
2924 3155 7.171508 ACGGATGCATGTAGACATATTTTAGTG 59.828 37.037 2.46 0.00 34.26 2.74
2925 3156 7.217200 ACGGATGCATGTAGACATATTTTAGT 58.783 34.615 2.46 0.00 34.26 2.24
2926 3157 7.658179 ACGGATGCATGTAGACATATTTTAG 57.342 36.000 2.46 0.00 34.26 1.85
2928 3159 9.890629 ATATACGGATGCATGTAGACATATTTT 57.109 29.630 2.46 0.00 34.26 1.82
2929 3160 9.890629 AATATACGGATGCATGTAGACATATTT 57.109 29.630 2.46 0.00 34.26 1.40
2937 3168 9.981114 TGGAATATAATATACGGATGCATGTAG 57.019 33.333 2.46 0.00 0.00 2.74
2939 3170 9.851686 AATGGAATATAATATACGGATGCATGT 57.148 29.630 2.46 0.00 0.00 3.21
2942 3173 9.898152 TCAAATGGAATATAATATACGGATGCA 57.102 29.630 0.00 0.00 0.00 3.96
2976 3207 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2977 3208 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2978 3209 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2979 3210 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2980 3211 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2981 3212 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2982 3213 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2983 3214 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2984 3215 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2985 3216 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2986 3217 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2987 3218 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2988 3219 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2989 3220 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2990 3221 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2991 3222 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
2992 3223 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
2993 3224 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2994 3225 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
2995 3226 0.617820 AGGCATGTACTCCCTCCGTT 60.618 55.000 0.00 0.00 0.00 4.44
2996 3227 0.617820 AAGGCATGTACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
2997 3228 0.179073 CAAGGCATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2998 3229 0.464554 GCAAGGCATGTACTCCCTCC 60.465 60.000 0.00 0.00 0.00 4.30
2999 3230 0.253044 TGCAAGGCATGTACTCCCTC 59.747 55.000 0.00 0.00 31.71 4.30
3000 3231 2.386864 TGCAAGGCATGTACTCCCT 58.613 52.632 0.00 0.00 31.71 4.20
3480 3713 7.323052 AGAACTTCCTAGAAAGTCCAAATCT 57.677 36.000 0.00 0.00 38.52 2.40
4401 4641 4.256920 AGTCTCAGACGCATAAGCAAAAT 58.743 39.130 0.00 0.00 42.27 1.82
4572 4814 6.314896 GTCTATGAAATCAGAAAGACACCAGG 59.685 42.308 13.92 0.00 35.70 4.45
4655 4897 6.038603 GCTGCAATGACAGGACATAATCTTTA 59.961 38.462 0.00 0.00 38.16 1.85
4811 5053 2.446848 GCTGGCTATGAGGGCTCCA 61.447 63.158 0.00 0.00 0.00 3.86
5193 5435 1.135575 GTGAAACAGCTGGCAGCATAC 60.136 52.381 38.09 23.69 45.56 2.39
5201 5443 4.391405 AAGAAAAAGGTGAAACAGCTGG 57.609 40.909 19.93 0.00 41.59 4.85
5362 5902 8.090214 AGAAAACATGTTGGATGAAATAACAGG 58.910 33.333 12.82 0.00 40.65 4.00
5485 6028 7.149569 ACACTGTAAATGATTTGATGACCAG 57.850 36.000 0.00 0.61 0.00 4.00
5612 6155 9.445878 AGCATGATTGGAATACATATGTAGAAG 57.554 33.333 19.80 3.68 33.52 2.85
6057 6609 6.263842 TGTCACAAGCAGAAAAGAGAATGAAT 59.736 34.615 0.00 0.00 0.00 2.57
6058 6610 5.589855 TGTCACAAGCAGAAAAGAGAATGAA 59.410 36.000 0.00 0.00 0.00 2.57
6059 6611 5.125356 TGTCACAAGCAGAAAAGAGAATGA 58.875 37.500 0.00 0.00 0.00 2.57
6060 6612 5.428496 TGTCACAAGCAGAAAAGAGAATG 57.572 39.130 0.00 0.00 0.00 2.67
6407 6959 5.687770 TGTTGACACGTCATGAATCATTT 57.312 34.783 0.00 0.00 39.64 2.32
6474 7955 8.844441 TCCAAACTAGAAAAACAAATACAACG 57.156 30.769 0.00 0.00 0.00 4.10
6651 8132 1.200020 CGTCACAAGGCCTGGATTTTC 59.800 52.381 16.25 0.00 0.00 2.29
6810 8291 3.181463 TGCACCACCTAGAACGTAACTTT 60.181 43.478 0.00 0.00 0.00 2.66
7148 8633 8.859156 CATGGTTTTATACAATTTCTTGGAACG 58.141 33.333 0.00 0.00 36.64 3.95
7329 8817 2.562298 GTGATCCCAACATGCAAAAGGA 59.438 45.455 0.00 0.00 0.00 3.36
7375 8863 4.537015 AGTCAGTCAGCATTTTAAAACGC 58.463 39.130 10.89 10.89 0.00 4.84
7526 9015 6.662755 TGGTTTCATCTTGCAGTATTATCCT 58.337 36.000 0.00 0.00 0.00 3.24
7844 9358 0.190815 AACACCCTTGGCCCAGATTT 59.809 50.000 5.14 0.00 0.00 2.17
8062 9592 9.107177 TGTGAAAACATACAATTTCAAAAGCAT 57.893 25.926 2.82 0.00 44.52 3.79
8256 9786 5.950965 ATTCACGACGATCATAAGTTCAC 57.049 39.130 0.00 0.00 0.00 3.18
8282 9812 3.923017 AGCCAGCAAGTTCATTGTAAC 57.077 42.857 0.00 0.00 41.29 2.50
8354 9884 2.818130 TGCAAGTGGAAATGAAAGGC 57.182 45.000 0.00 0.00 0.00 4.35
8402 9932 4.069304 AGTAAAGCATAAAGACACCGCAA 58.931 39.130 0.00 0.00 0.00 4.85
8535 10065 2.287427 CCAGCAAGAGCACAAAAGTCAG 60.287 50.000 0.00 0.00 45.49 3.51
8622 10152 7.327032 CGTTCTGAAATATATCGATCAGCAGAA 59.673 37.037 0.00 10.85 39.27 3.02
8630 10160 5.864474 GTGGAGCGTTCTGAAATATATCGAT 59.136 40.000 2.16 2.16 0.00 3.59
8677 10207 3.279285 CGAGTCATCATCGGCATGT 57.721 52.632 0.00 0.00 36.54 3.21
8737 10267 2.873170 TCATTCGTCGTTGCATTCAC 57.127 45.000 0.00 0.00 0.00 3.18
8858 10388 4.034048 GGTCCACATATGAAATGTCACGAC 59.966 45.833 10.38 0.84 36.31 4.34
8871 10401 7.136822 ACAACATATACACTGGTCCACATAT 57.863 36.000 0.00 0.00 0.00 1.78
8924 10454 3.213506 TGTGTGTCTGCTTTGCTGTATT 58.786 40.909 0.00 0.00 0.00 1.89
8944 10474 9.557061 AGTAATGGAAGCAGCATATGATATATG 57.443 33.333 6.97 4.79 0.00 1.78
8949 10479 8.874744 ATTTAGTAATGGAAGCAGCATATGAT 57.125 30.769 6.97 0.00 0.00 2.45
8950 10480 9.219603 GTATTTAGTAATGGAAGCAGCATATGA 57.780 33.333 6.97 0.00 0.00 2.15
8951 10481 9.224267 AGTATTTAGTAATGGAAGCAGCATATG 57.776 33.333 0.00 0.00 0.00 1.78
8955 10485 6.055588 GGAGTATTTAGTAATGGAAGCAGCA 58.944 40.000 0.00 0.00 0.00 4.41
8956 10486 5.470437 GGGAGTATTTAGTAATGGAAGCAGC 59.530 44.000 0.00 0.00 0.00 5.25
8958 10488 6.824958 AGGGAGTATTTAGTAATGGAAGCA 57.175 37.500 0.00 0.00 0.00 3.91
8959 10489 7.054751 ACAAGGGAGTATTTAGTAATGGAAGC 58.945 38.462 0.00 0.00 0.00 3.86
8960 10490 7.715686 GGACAAGGGAGTATTTAGTAATGGAAG 59.284 40.741 0.00 0.00 0.00 3.46
8961 10491 7.571025 GGACAAGGGAGTATTTAGTAATGGAA 58.429 38.462 0.00 0.00 0.00 3.53
8962 10492 6.183360 CGGACAAGGGAGTATTTAGTAATGGA 60.183 42.308 0.00 0.00 0.00 3.41
8963 10493 5.989777 CGGACAAGGGAGTATTTAGTAATGG 59.010 44.000 0.00 0.00 0.00 3.16
8965 10495 7.427989 TTCGGACAAGGGAGTATTTAGTAAT 57.572 36.000 0.00 0.00 0.00 1.89
8966 10496 6.855763 TTCGGACAAGGGAGTATTTAGTAA 57.144 37.500 0.00 0.00 0.00 2.24
8967 10497 6.855763 TTTCGGACAAGGGAGTATTTAGTA 57.144 37.500 0.00 0.00 0.00 1.82
8969 10499 7.985752 AGTATTTTCGGACAAGGGAGTATTTAG 59.014 37.037 0.00 0.00 0.00 1.85
8970 10500 7.854337 AGTATTTTCGGACAAGGGAGTATTTA 58.146 34.615 0.00 0.00 0.00 1.40
8973 10503 5.952347 AGTATTTTCGGACAAGGGAGTAT 57.048 39.130 0.00 0.00 0.00 2.12
8975 10505 4.202430 ACAAGTATTTTCGGACAAGGGAGT 60.202 41.667 0.00 0.00 0.00 3.85
8976 10506 4.324267 ACAAGTATTTTCGGACAAGGGAG 58.676 43.478 0.00 0.00 0.00 4.30
8977 10507 4.202377 TGACAAGTATTTTCGGACAAGGGA 60.202 41.667 0.00 0.00 0.00 4.20
8978 10508 4.069304 TGACAAGTATTTTCGGACAAGGG 58.931 43.478 0.00 0.00 0.00 3.95
8981 10511 6.928979 TCTTTGACAAGTATTTTCGGACAA 57.071 33.333 0.00 0.00 0.00 3.18
8982 10512 6.928979 TTCTTTGACAAGTATTTTCGGACA 57.071 33.333 0.00 0.00 0.00 4.02
8983 10513 7.326063 CCATTTCTTTGACAAGTATTTTCGGAC 59.674 37.037 0.00 0.00 0.00 4.79
8984 10514 7.229707 TCCATTTCTTTGACAAGTATTTTCGGA 59.770 33.333 0.00 0.00 0.00 4.55
8986 10516 8.853345 CATCCATTTCTTTGACAAGTATTTTCG 58.147 33.333 0.00 0.00 0.00 3.46
8987 10517 9.696917 ACATCCATTTCTTTGACAAGTATTTTC 57.303 29.630 0.00 0.00 0.00 2.29
8991 10521 9.911788 AGATACATCCATTTCTTTGACAAGTAT 57.088 29.630 0.00 0.00 0.00 2.12
8993 10523 9.388506 CTAGATACATCCATTTCTTTGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
8995 10525 9.383519 GTCTAGATACATCCATTTCTTTGACAA 57.616 33.333 0.00 0.00 0.00 3.18
8996 10526 8.539544 TGTCTAGATACATCCATTTCTTTGACA 58.460 33.333 0.00 0.00 32.89 3.58
8997 10527 8.948631 TGTCTAGATACATCCATTTCTTTGAC 57.051 34.615 0.00 0.00 0.00 3.18
9050 10580 9.406828 CGGAAATACTCGTCATAGAAATGAATA 57.593 33.333 0.00 0.00 43.69 1.75
9051 10581 7.385205 CCGGAAATACTCGTCATAGAAATGAAT 59.615 37.037 0.00 0.00 43.69 2.57
9052 10582 6.700081 CCGGAAATACTCGTCATAGAAATGAA 59.300 38.462 0.00 0.00 43.69 2.57
9053 10583 6.040054 TCCGGAAATACTCGTCATAGAAATGA 59.960 38.462 0.00 0.00 39.87 2.57
9054 10584 6.144080 GTCCGGAAATACTCGTCATAGAAATG 59.856 42.308 5.23 0.00 0.00 2.32
9055 10585 6.214399 GTCCGGAAATACTCGTCATAGAAAT 58.786 40.000 5.23 0.00 0.00 2.17
9056 10586 5.585390 GTCCGGAAATACTCGTCATAGAAA 58.415 41.667 5.23 0.00 0.00 2.52
9057 10587 4.260907 CGTCCGGAAATACTCGTCATAGAA 60.261 45.833 5.23 0.00 0.00 2.10
9058 10588 3.249320 CGTCCGGAAATACTCGTCATAGA 59.751 47.826 5.23 0.00 0.00 1.98
9060 10590 2.291465 CCGTCCGGAAATACTCGTCATA 59.709 50.000 5.23 0.00 37.50 2.15
9061 10591 1.066605 CCGTCCGGAAATACTCGTCAT 59.933 52.381 5.23 0.00 37.50 3.06
9063 10593 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
9064 10594 2.872408 TCCGTCCGGAAATACTCGT 58.128 52.632 5.23 0.00 42.05 4.18
9073 10603 0.251297 TTGTACTCCTTCCGTCCGGA 60.251 55.000 0.00 0.00 43.52 5.14
9074 10604 0.172803 CTTGTACTCCTTCCGTCCGG 59.827 60.000 0.00 0.00 0.00 5.14
9075 10605 0.886563 ACTTGTACTCCTTCCGTCCG 59.113 55.000 0.00 0.00 0.00 4.79
9076 10606 2.169330 AGACTTGTACTCCTTCCGTCC 58.831 52.381 0.00 0.00 0.00 4.79
9077 10607 3.938289 AAGACTTGTACTCCTTCCGTC 57.062 47.619 0.00 0.00 0.00 4.79
9078 10608 3.387050 ACAAAGACTTGTACTCCTTCCGT 59.613 43.478 0.00 0.00 44.14 4.69
9083 10613 7.093684 GGAATCTCTACAAAGACTTGTACTCCT 60.094 40.741 0.00 0.00 44.14 3.69
9084 10614 7.036829 GGAATCTCTACAAAGACTTGTACTCC 58.963 42.308 0.00 0.00 44.14 3.85
9090 10620 8.253810 TCATAGTGGAATCTCTACAAAGACTTG 58.746 37.037 0.00 0.00 38.61 3.16
9115 10645 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
9118 10648 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
9151 10681 6.592994 CAGAGAGCAAAATGAGTGAATCTACA 59.407 38.462 0.00 0.00 0.00 2.74
9169 10699 3.697045 ACTATGGACTACACACAGAGAGC 59.303 47.826 0.00 0.00 0.00 4.09
9173 10703 6.437477 AGATTTCACTATGGACTACACACAGA 59.563 38.462 0.00 0.00 0.00 3.41
9174 10704 6.634805 AGATTTCACTATGGACTACACACAG 58.365 40.000 0.00 0.00 0.00 3.66
9176 10706 6.868622 AGAGATTTCACTATGGACTACACAC 58.131 40.000 0.00 0.00 0.00 3.82
9177 10707 7.614192 TGTAGAGATTTCACTATGGACTACACA 59.386 37.037 0.00 0.00 34.77 3.72
9178 10708 7.997482 TGTAGAGATTTCACTATGGACTACAC 58.003 38.462 0.00 0.00 34.77 2.90
9219 10749 5.241728 GCATACCCAAATACTCCCTTCATTC 59.758 44.000 0.00 0.00 0.00 2.67
9222 10752 3.525609 TGCATACCCAAATACTCCCTTCA 59.474 43.478 0.00 0.00 0.00 3.02
9224 10754 3.372675 GGTGCATACCCAAATACTCCCTT 60.373 47.826 0.00 0.00 41.36 3.95
9252 10782 1.186917 CCATGGGCAGGTCAAAGCAA 61.187 55.000 2.85 0.00 0.00 3.91
9254 10784 0.899717 TTCCATGGGCAGGTCAAAGC 60.900 55.000 13.02 0.00 0.00 3.51
9262 10792 4.162040 AGAGAGTAATTTCCATGGGCAG 57.838 45.455 13.02 0.00 0.00 4.85
9290 10820 7.074653 AGTGACTCAACTTGGGAGTATTTTA 57.925 36.000 0.00 0.00 45.21 1.52
9399 10967 7.781324 AAGAATCCACTGAAACATATTTGGT 57.219 32.000 0.00 0.00 0.00 3.67
9514 11089 6.097696 AGTTCCAAATTAATATTTCCCCACGG 59.902 38.462 0.00 0.00 31.63 4.94
9516 11091 8.536175 TCAAGTTCCAAATTAATATTTCCCCAC 58.464 33.333 0.00 0.00 31.63 4.61
9575 11150 1.971962 CGCTTTCTTCAACAATGCGAC 59.028 47.619 0.12 0.00 45.40 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.