Multiple sequence alignment - TraesCS3D01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G278000 chr3D 100.000 8260 0 0 1 8260 385154777 385163036 0.000000e+00 15254.0
1 TraesCS3D01G278000 chr3D 85.291 843 73 21 7417 8214 264608922 264609758 0.000000e+00 822.0
2 TraesCS3D01G278000 chr3B 95.687 3779 124 22 1874 5643 501123902 501127650 0.000000e+00 6039.0
3 TraesCS3D01G278000 chr3B 89.912 1249 63 30 453 1649 501122351 501123588 0.000000e+00 1550.0
4 TraesCS3D01G278000 chr3B 92.944 822 34 10 5781 6590 501128425 501129234 0.000000e+00 1175.0
5 TraesCS3D01G278000 chr3B 90.347 808 44 8 6491 7289 501129228 501130010 0.000000e+00 1029.0
6 TraesCS3D01G278000 chr3B 93.450 229 11 3 1642 1870 501123617 501123841 3.690000e-88 337.0
7 TraesCS3D01G278000 chr3B 84.698 281 20 11 4392 4659 812335549 812335819 8.220000e-65 259.0
8 TraesCS3D01G278000 chr3B 88.710 124 13 1 5650 5773 501128141 501128263 5.160000e-32 150.0
9 TraesCS3D01G278000 chr3A 96.670 1742 44 10 2921 4659 507459487 507461217 0.000000e+00 2883.0
10 TraesCS3D01G278000 chr3A 94.564 1306 51 14 1643 2941 507458105 507459397 0.000000e+00 2001.0
11 TraesCS3D01G278000 chr3A 96.062 965 33 4 690 1649 507457109 507458073 0.000000e+00 1567.0
12 TraesCS3D01G278000 chr3A 94.368 1012 46 8 4762 5772 507461576 507462577 0.000000e+00 1543.0
13 TraesCS3D01G278000 chr3A 93.194 764 45 5 5772 6530 507462616 507463377 0.000000e+00 1116.0
14 TraesCS3D01G278000 chr3A 88.466 893 43 20 6541 7420 507463433 507464278 0.000000e+00 1024.0
15 TraesCS3D01G278000 chr3A 88.108 555 46 9 7720 8257 325027240 325027791 6.990000e-180 641.0
16 TraesCS3D01G278000 chr3A 87.132 544 53 11 7730 8260 113337267 113336728 1.190000e-167 601.0
17 TraesCS3D01G278000 chr3A 85.650 223 21 7 439 659 507456362 507456575 3.000000e-54 224.0
18 TraesCS3D01G278000 chr3A 83.951 243 28 8 7421 7653 325018363 325018604 1.080000e-53 222.0
19 TraesCS3D01G278000 chr3A 80.769 182 27 7 1120 1300 743453678 743453852 1.450000e-27 135.0
20 TraesCS3D01G278000 chr7D 85.556 900 65 27 7420 8260 80435649 80434756 0.000000e+00 881.0
21 TraesCS3D01G278000 chr7D 84.938 883 89 26 7417 8259 508499174 508500052 0.000000e+00 854.0
22 TraesCS3D01G278000 chr7D 79.910 886 107 40 7420 8260 147494023 147493164 1.190000e-162 584.0
23 TraesCS3D01G278000 chr7D 100.000 28 0 0 5426 5453 411620324 411620351 1.500000e-02 52.8
24 TraesCS3D01G278000 chr6B 84.502 884 90 29 7417 8259 153314476 153315353 0.000000e+00 830.0
25 TraesCS3D01G278000 chr6B 100.000 28 0 0 5426 5453 686514306 686514279 1.500000e-02 52.8
26 TraesCS3D01G278000 chr6D 94.128 545 27 3 7720 8260 358086308 358085765 0.000000e+00 824.0
27 TraesCS3D01G278000 chr6D 89.041 146 9 5 4516 4659 417187541 417187401 3.060000e-39 174.0
28 TraesCS3D01G278000 chr4B 89.358 545 41 8 7730 8260 428189768 428189227 0.000000e+00 669.0
29 TraesCS3D01G278000 chr4A 80.590 881 111 34 7422 8253 434740700 434741569 7.040000e-175 625.0
30 TraesCS3D01G278000 chr2A 80.046 872 117 39 7425 8260 671335191 671334341 1.980000e-165 593.0
31 TraesCS3D01G278000 chr2A 83.692 558 59 21 7720 8260 710933820 710934362 1.600000e-136 497.0
32 TraesCS3D01G278000 chr5A 84.350 492 42 19 4156 4632 32990570 32991041 4.550000e-122 449.0
33 TraesCS3D01G278000 chr2D 83.012 518 52 17 4156 4659 626398663 626398168 3.540000e-118 436.0
34 TraesCS3D01G278000 chr2D 93.567 171 7 3 7420 7586 499309971 499309801 1.380000e-62 252.0
35 TraesCS3D01G278000 chr2D 92.571 175 8 4 7417 7586 499307644 499307818 6.400000e-61 246.0
36 TraesCS3D01G278000 chr2D 78.970 233 38 8 3970 4197 626398900 626398674 1.860000e-31 148.0
37 TraesCS3D01G278000 chr7B 85.614 285 32 7 7420 7699 174564462 174564182 2.920000e-74 291.0
38 TraesCS3D01G278000 chr1A 91.489 188 13 2 7417 7601 587814087 587814274 1.060000e-63 255.0
39 TraesCS3D01G278000 chr1A 85.106 235 35 0 4387 4621 532252487 532252721 2.980000e-59 241.0
40 TraesCS3D01G278000 chr1A 86.905 168 22 0 3045 3212 532251161 532251328 1.090000e-43 189.0
41 TraesCS3D01G278000 chr1D 86.463 229 31 0 4393 4621 433915358 433915586 1.380000e-62 252.0
42 TraesCS3D01G278000 chr1D 84.103 195 25 5 1135 1329 433911694 433911882 5.090000e-42 183.0
43 TraesCS3D01G278000 chr1D 100.000 28 0 0 5426 5453 122902199 122902172 1.500000e-02 52.8
44 TraesCS3D01G278000 chr1B 85.590 229 33 0 4393 4621 586301505 586301733 2.980000e-59 241.0
45 TraesCS3D01G278000 chr1B 85.650 223 20 6 8049 8260 300336830 300337051 3.000000e-54 224.0
46 TraesCS3D01G278000 chr1B 84.305 223 25 9 1135 1355 586298031 586298245 8.400000e-50 209.0
47 TraesCS3D01G278000 chr1B 86.310 168 23 0 3045 3212 586300183 586300350 5.090000e-42 183.0
48 TraesCS3D01G278000 chr1B 100.000 28 0 0 5426 5453 670393052 670393079 1.500000e-02 52.8
49 TraesCS3D01G278000 chr6A 79.058 191 32 7 1120 1309 102126258 102126075 3.130000e-24 124.0
50 TraesCS3D01G278000 chr6A 100.000 28 0 0 5426 5453 444672303 444672276 1.500000e-02 52.8
51 TraesCS3D01G278000 chr5D 100.000 28 0 0 5426 5453 524258307 524258280 1.500000e-02 52.8
52 TraesCS3D01G278000 chr2B 96.875 32 0 1 5426 5456 696359193 696359162 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G278000 chr3D 385154777 385163036 8259 False 15254.000000 15254 100.000000 1 8260 1 chr3D.!!$F2 8259
1 TraesCS3D01G278000 chr3D 264608922 264609758 836 False 822.000000 822 85.291000 7417 8214 1 chr3D.!!$F1 797
2 TraesCS3D01G278000 chr3B 501122351 501130010 7659 False 1713.333333 6039 91.841667 453 7289 6 chr3B.!!$F2 6836
3 TraesCS3D01G278000 chr3A 507456362 507464278 7916 False 1479.714286 2883 92.710571 439 7420 7 chr3A.!!$F4 6981
4 TraesCS3D01G278000 chr3A 325027240 325027791 551 False 641.000000 641 88.108000 7720 8257 1 chr3A.!!$F2 537
5 TraesCS3D01G278000 chr3A 113336728 113337267 539 True 601.000000 601 87.132000 7730 8260 1 chr3A.!!$R1 530
6 TraesCS3D01G278000 chr7D 80434756 80435649 893 True 881.000000 881 85.556000 7420 8260 1 chr7D.!!$R1 840
7 TraesCS3D01G278000 chr7D 508499174 508500052 878 False 854.000000 854 84.938000 7417 8259 1 chr7D.!!$F2 842
8 TraesCS3D01G278000 chr7D 147493164 147494023 859 True 584.000000 584 79.910000 7420 8260 1 chr7D.!!$R2 840
9 TraesCS3D01G278000 chr6B 153314476 153315353 877 False 830.000000 830 84.502000 7417 8259 1 chr6B.!!$F1 842
10 TraesCS3D01G278000 chr6D 358085765 358086308 543 True 824.000000 824 94.128000 7720 8260 1 chr6D.!!$R1 540
11 TraesCS3D01G278000 chr4B 428189227 428189768 541 True 669.000000 669 89.358000 7730 8260 1 chr4B.!!$R1 530
12 TraesCS3D01G278000 chr4A 434740700 434741569 869 False 625.000000 625 80.590000 7422 8253 1 chr4A.!!$F1 831
13 TraesCS3D01G278000 chr2A 671334341 671335191 850 True 593.000000 593 80.046000 7425 8260 1 chr2A.!!$R1 835
14 TraesCS3D01G278000 chr2A 710933820 710934362 542 False 497.000000 497 83.692000 7720 8260 1 chr2A.!!$F1 540
15 TraesCS3D01G278000 chr2D 626398168 626398900 732 True 292.000000 436 80.991000 3970 4659 2 chr2D.!!$R2 689
16 TraesCS3D01G278000 chr1A 532251161 532252721 1560 False 215.000000 241 86.005500 3045 4621 2 chr1A.!!$F2 1576
17 TraesCS3D01G278000 chr1D 433911694 433915586 3892 False 217.500000 252 85.283000 1135 4621 2 chr1D.!!$F1 3486
18 TraesCS3D01G278000 chr1B 586298031 586301733 3702 False 211.000000 241 85.401667 1135 4621 3 chr1B.!!$F3 3486


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.041312 CGCTCAAAACCGTGACCAAG 60.041 55.000 0.00 0.00 0.00 3.61 F
351 352 0.103390 TGCAAGTCGTCTGGTTTCGA 59.897 50.000 0.00 0.00 0.00 3.71 F
945 1498 0.783162 CGGTTTTCTTAACGCGCGAC 60.783 55.000 39.36 21.08 0.00 5.19 F
1798 2666 0.257039 ACTTGTGGATGCCTGGATCC 59.743 55.000 4.20 4.20 42.23 3.36 F
1878 2803 0.720232 TACCCTTTCCCCTGCTCCTA 59.280 55.000 0.00 0.00 0.00 2.94 F
2346 3478 1.120530 AGAAGAACAGTCCACGTGGT 58.879 50.000 32.74 14.73 36.34 4.16 F
3235 4779 3.783943 GTGTCTGTTGTTAGCGTTGTTTG 59.216 43.478 0.00 0.00 0.00 2.93 F
3948 5589 1.539157 CCCCTTGCTGTTTCTTCCTC 58.461 55.000 0.00 0.00 0.00 3.71 F
5302 7418 1.539929 GGACTCTCGCTTCATCATGGG 60.540 57.143 0.00 0.00 0.00 4.00 F
6364 9125 0.171231 TCGTTCTGAGAGATGGTGCG 59.829 55.000 0.00 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1727 0.252558 GGAGGTTGGGGTAGGAGTCA 60.253 60.000 0.00 0.00 0.00 3.41 R
1398 1960 1.164041 AGAAAAACTCCACCGCGGTG 61.164 55.000 44.04 44.04 45.02 4.94 R
2370 3502 1.447643 GCATCATACCCTCTGGCGT 59.552 57.895 0.00 0.00 33.59 5.68 R
3224 4768 3.922240 GGAAGATCGTACAAACAACGCTA 59.078 43.478 0.00 0.00 40.12 4.26 R
3235 4779 9.922305 CAATTTCTGAAATAAGGAAGATCGTAC 57.078 33.333 15.45 0.00 0.00 3.67 R
3948 5589 1.478105 GGCCTGCTTTTCTACCATTGG 59.522 52.381 0.00 0.00 0.00 3.16 R
4855 6971 2.420022 ACGCCTGTTTTGATATCAGCAC 59.580 45.455 5.39 7.37 0.00 4.40 R
5396 7512 1.184431 AATCACCATTTGCCGCATCA 58.816 45.000 0.00 0.00 0.00 3.07 R
6600 9519 0.162294 GCTTCTTGCATGCAAAACGC 59.838 50.000 31.37 24.66 42.31 4.84 R
7675 10629 0.178891 AGCAAGAACAGAGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.439500 AAATTCACATACCTTTTCAAATCCATG 57.561 29.630 0.00 0.00 0.00 3.66
60 61 7.773489 TTCACATACCTTTTCAAATCCATGA 57.227 32.000 0.00 0.00 0.00 3.07
61 62 7.156876 TCACATACCTTTTCAAATCCATGAC 57.843 36.000 0.00 0.00 0.00 3.06
62 63 6.947733 TCACATACCTTTTCAAATCCATGACT 59.052 34.615 0.00 0.00 0.00 3.41
63 64 7.451255 TCACATACCTTTTCAAATCCATGACTT 59.549 33.333 0.00 0.00 0.00 3.01
64 65 8.090214 CACATACCTTTTCAAATCCATGACTTT 58.910 33.333 0.00 0.00 0.00 2.66
65 66 8.650490 ACATACCTTTTCAAATCCATGACTTTT 58.350 29.630 0.00 0.00 0.00 2.27
66 67 9.492973 CATACCTTTTCAAATCCATGACTTTTT 57.507 29.630 0.00 0.00 0.00 1.94
127 128 8.939201 TTTTTCAAGTTCATGCAAGTTTATCA 57.061 26.923 0.00 0.00 0.00 2.15
128 129 8.939201 TTTTCAAGTTCATGCAAGTTTATCAA 57.061 26.923 0.00 0.00 0.00 2.57
129 130 8.939201 TTTCAAGTTCATGCAAGTTTATCAAA 57.061 26.923 0.00 0.00 0.00 2.69
130 131 9.545105 TTTCAAGTTCATGCAAGTTTATCAAAT 57.455 25.926 0.00 0.00 0.00 2.32
131 132 8.746922 TCAAGTTCATGCAAGTTTATCAAATC 57.253 30.769 0.00 0.00 0.00 2.17
132 133 7.814107 TCAAGTTCATGCAAGTTTATCAAATCC 59.186 33.333 0.00 0.00 0.00 3.01
133 134 6.324819 AGTTCATGCAAGTTTATCAAATCCG 58.675 36.000 0.00 0.00 0.00 4.18
134 135 6.150976 AGTTCATGCAAGTTTATCAAATCCGA 59.849 34.615 0.00 0.00 0.00 4.55
135 136 6.122850 TCATGCAAGTTTATCAAATCCGAG 57.877 37.500 0.00 0.00 0.00 4.63
136 137 5.647658 TCATGCAAGTTTATCAAATCCGAGT 59.352 36.000 0.00 0.00 0.00 4.18
137 138 6.821160 TCATGCAAGTTTATCAAATCCGAGTA 59.179 34.615 0.00 0.00 0.00 2.59
138 139 6.417191 TGCAAGTTTATCAAATCCGAGTAC 57.583 37.500 0.00 0.00 0.00 2.73
139 140 6.170506 TGCAAGTTTATCAAATCCGAGTACT 58.829 36.000 0.00 0.00 0.00 2.73
140 141 6.653320 TGCAAGTTTATCAAATCCGAGTACTT 59.347 34.615 0.00 0.00 0.00 2.24
141 142 7.174253 TGCAAGTTTATCAAATCCGAGTACTTT 59.826 33.333 0.00 0.00 0.00 2.66
142 143 8.021396 GCAAGTTTATCAAATCCGAGTACTTTT 58.979 33.333 0.00 0.00 0.00 2.27
143 144 9.893305 CAAGTTTATCAAATCCGAGTACTTTTT 57.107 29.630 0.00 0.00 0.00 1.94
182 183 9.651913 AACTGTTTTTGAAATTCATGTACTTGT 57.348 25.926 8.46 0.00 0.00 3.16
183 184 9.651913 ACTGTTTTTGAAATTCATGTACTTGTT 57.348 25.926 8.46 0.00 0.00 2.83
191 192 9.474920 TGAAATTCATGTACTTGTTTCAATTCC 57.525 29.630 17.78 4.85 33.97 3.01
192 193 9.474920 GAAATTCATGTACTTGTTTCAATTCCA 57.525 29.630 14.74 0.00 0.00 3.53
193 194 8.816640 AATTCATGTACTTGTTTCAATTCCAC 57.183 30.769 8.46 0.00 0.00 4.02
194 195 5.996219 TCATGTACTTGTTTCAATTCCACG 58.004 37.500 8.46 0.00 0.00 4.94
195 196 5.529430 TCATGTACTTGTTTCAATTCCACGT 59.471 36.000 8.46 0.00 0.00 4.49
196 197 6.706716 TCATGTACTTGTTTCAATTCCACGTA 59.293 34.615 8.46 0.00 0.00 3.57
197 198 6.289745 TGTACTTGTTTCAATTCCACGTAC 57.710 37.500 0.00 0.00 35.55 3.67
198 199 6.050432 TGTACTTGTTTCAATTCCACGTACT 58.950 36.000 0.00 0.00 35.82 2.73
199 200 6.539464 TGTACTTGTTTCAATTCCACGTACTT 59.461 34.615 0.00 0.00 35.82 2.24
200 201 6.445357 ACTTGTTTCAATTCCACGTACTTT 57.555 33.333 0.00 0.00 0.00 2.66
201 202 6.859017 ACTTGTTTCAATTCCACGTACTTTT 58.141 32.000 0.00 0.00 0.00 2.27
202 203 6.970613 ACTTGTTTCAATTCCACGTACTTTTC 59.029 34.615 0.00 0.00 0.00 2.29
203 204 6.438259 TGTTTCAATTCCACGTACTTTTCA 57.562 33.333 0.00 0.00 0.00 2.69
204 205 6.853720 TGTTTCAATTCCACGTACTTTTCAA 58.146 32.000 0.00 0.00 0.00 2.69
205 206 7.313646 TGTTTCAATTCCACGTACTTTTCAAA 58.686 30.769 0.00 0.00 0.00 2.69
206 207 7.813148 TGTTTCAATTCCACGTACTTTTCAAAA 59.187 29.630 0.00 0.00 0.00 2.44
207 208 7.743520 TTCAATTCCACGTACTTTTCAAAAC 57.256 32.000 0.00 0.00 0.00 2.43
208 209 6.853720 TCAATTCCACGTACTTTTCAAAACA 58.146 32.000 0.00 0.00 0.00 2.83
209 210 7.484975 TCAATTCCACGTACTTTTCAAAACAT 58.515 30.769 0.00 0.00 0.00 2.71
210 211 7.976734 TCAATTCCACGTACTTTTCAAAACATT 59.023 29.630 0.00 0.00 0.00 2.71
211 212 9.239002 CAATTCCACGTACTTTTCAAAACATTA 57.761 29.630 0.00 0.00 0.00 1.90
212 213 8.791355 ATTCCACGTACTTTTCAAAACATTAC 57.209 30.769 0.00 0.00 0.00 1.89
213 214 6.420588 TCCACGTACTTTTCAAAACATTACG 58.579 36.000 10.41 10.41 34.98 3.18
214 215 5.114423 CCACGTACTTTTCAAAACATTACGC 59.886 40.000 11.36 0.00 32.46 4.42
215 216 4.899616 ACGTACTTTTCAAAACATTACGCG 59.100 37.500 3.53 3.53 32.46 6.01
216 217 5.131890 CGTACTTTTCAAAACATTACGCGA 58.868 37.500 15.93 0.00 0.00 5.87
217 218 5.616383 CGTACTTTTCAAAACATTACGCGAA 59.384 36.000 15.93 2.74 0.00 4.70
218 219 5.859824 ACTTTTCAAAACATTACGCGAAC 57.140 34.783 15.93 0.00 0.00 3.95
219 220 4.736307 ACTTTTCAAAACATTACGCGAACC 59.264 37.500 15.93 0.00 0.00 3.62
220 221 4.555348 TTTCAAAACATTACGCGAACCT 57.445 36.364 15.93 0.00 0.00 3.50
221 222 3.529634 TCAAAACATTACGCGAACCTG 57.470 42.857 15.93 7.16 0.00 4.00
222 223 2.224549 TCAAAACATTACGCGAACCTGG 59.775 45.455 15.93 0.00 0.00 4.45
223 224 2.172851 AAACATTACGCGAACCTGGA 57.827 45.000 15.93 0.00 0.00 3.86
224 225 2.172851 AACATTACGCGAACCTGGAA 57.827 45.000 15.93 0.00 0.00 3.53
225 226 2.172851 ACATTACGCGAACCTGGAAA 57.827 45.000 15.93 0.00 0.00 3.13
226 227 2.496111 ACATTACGCGAACCTGGAAAA 58.504 42.857 15.93 0.00 0.00 2.29
227 228 2.879646 ACATTACGCGAACCTGGAAAAA 59.120 40.909 15.93 0.00 0.00 1.94
228 229 3.058501 ACATTACGCGAACCTGGAAAAAG 60.059 43.478 15.93 0.00 0.00 2.27
229 230 2.243602 TACGCGAACCTGGAAAAAGT 57.756 45.000 15.93 0.00 0.00 2.66
230 231 2.243602 ACGCGAACCTGGAAAAAGTA 57.756 45.000 15.93 0.00 0.00 2.24
231 232 1.869132 ACGCGAACCTGGAAAAAGTAC 59.131 47.619 15.93 0.00 0.00 2.73
232 233 1.136446 CGCGAACCTGGAAAAAGTACG 60.136 52.381 0.00 0.00 0.00 3.67
233 234 1.869132 GCGAACCTGGAAAAAGTACGT 59.131 47.619 0.00 0.00 0.00 3.57
234 235 2.349155 GCGAACCTGGAAAAAGTACGTG 60.349 50.000 0.00 0.00 0.00 4.49
235 236 3.125316 CGAACCTGGAAAAAGTACGTGA 58.875 45.455 0.00 0.00 0.00 4.35
236 237 3.556775 CGAACCTGGAAAAAGTACGTGAA 59.443 43.478 0.00 0.00 0.00 3.18
237 238 4.212636 CGAACCTGGAAAAAGTACGTGAAT 59.787 41.667 0.00 0.00 0.00 2.57
238 239 5.277634 CGAACCTGGAAAAAGTACGTGAATT 60.278 40.000 0.00 0.00 0.00 2.17
239 240 6.459670 AACCTGGAAAAAGTACGTGAATTT 57.540 33.333 0.00 0.00 0.00 1.82
240 241 5.827666 ACCTGGAAAAAGTACGTGAATTTG 58.172 37.500 0.00 0.00 0.00 2.32
241 242 5.591067 ACCTGGAAAAAGTACGTGAATTTGA 59.409 36.000 0.00 0.00 0.00 2.69
242 243 6.264518 ACCTGGAAAAAGTACGTGAATTTGAT 59.735 34.615 0.00 0.00 0.00 2.57
243 244 7.145323 CCTGGAAAAAGTACGTGAATTTGATT 58.855 34.615 0.00 0.00 0.00 2.57
244 245 7.114811 CCTGGAAAAAGTACGTGAATTTGATTG 59.885 37.037 0.00 0.00 0.00 2.67
245 246 6.920758 TGGAAAAAGTACGTGAATTTGATTGG 59.079 34.615 0.00 0.00 0.00 3.16
246 247 6.128929 GGAAAAAGTACGTGAATTTGATTGGC 60.129 38.462 0.00 0.00 0.00 4.52
247 248 5.446143 AAAGTACGTGAATTTGATTGGCA 57.554 34.783 0.00 0.00 0.00 4.92
248 249 5.643379 AAGTACGTGAATTTGATTGGCAT 57.357 34.783 0.00 0.00 0.00 4.40
249 250 4.985413 AGTACGTGAATTTGATTGGCATG 58.015 39.130 0.00 0.00 0.00 4.06
250 251 3.235157 ACGTGAATTTGATTGGCATGG 57.765 42.857 0.00 0.00 0.00 3.66
251 252 2.562298 ACGTGAATTTGATTGGCATGGT 59.438 40.909 0.00 0.00 0.00 3.55
252 253 3.761218 ACGTGAATTTGATTGGCATGGTA 59.239 39.130 0.00 0.00 0.00 3.25
253 254 4.219507 ACGTGAATTTGATTGGCATGGTAA 59.780 37.500 0.00 0.00 0.00 2.85
254 255 5.167121 CGTGAATTTGATTGGCATGGTAAA 58.833 37.500 0.00 0.00 0.00 2.01
255 256 5.636965 CGTGAATTTGATTGGCATGGTAAAA 59.363 36.000 0.00 0.00 0.00 1.52
256 257 6.146837 CGTGAATTTGATTGGCATGGTAAAAA 59.853 34.615 0.00 0.00 0.00 1.94
274 275 3.366052 AAAATGGGGCGAGATAACACT 57.634 42.857 0.00 0.00 0.00 3.55
275 276 4.497291 AAAATGGGGCGAGATAACACTA 57.503 40.909 0.00 0.00 0.00 2.74
276 277 4.497291 AAATGGGGCGAGATAACACTAA 57.503 40.909 0.00 0.00 0.00 2.24
277 278 3.753294 ATGGGGCGAGATAACACTAAG 57.247 47.619 0.00 0.00 0.00 2.18
278 279 2.742348 TGGGGCGAGATAACACTAAGA 58.258 47.619 0.00 0.00 0.00 2.10
279 280 3.305720 TGGGGCGAGATAACACTAAGAT 58.694 45.455 0.00 0.00 0.00 2.40
280 281 3.321111 TGGGGCGAGATAACACTAAGATC 59.679 47.826 0.00 0.00 0.00 2.75
281 282 3.566523 GGGCGAGATAACACTAAGATCG 58.433 50.000 0.00 0.00 0.00 3.69
285 286 5.096954 CGAGATAACACTAAGATCGCTCA 57.903 43.478 0.00 0.00 0.00 4.26
286 287 5.511571 CGAGATAACACTAAGATCGCTCAA 58.488 41.667 0.00 0.00 0.00 3.02
287 288 5.971792 CGAGATAACACTAAGATCGCTCAAA 59.028 40.000 0.00 0.00 0.00 2.69
288 289 6.472486 CGAGATAACACTAAGATCGCTCAAAA 59.528 38.462 0.00 0.00 0.00 2.44
289 290 7.513814 CGAGATAACACTAAGATCGCTCAAAAC 60.514 40.741 0.00 0.00 0.00 2.43
290 291 6.535508 AGATAACACTAAGATCGCTCAAAACC 59.464 38.462 0.00 0.00 0.00 3.27
291 292 2.993899 ACACTAAGATCGCTCAAAACCG 59.006 45.455 0.00 0.00 0.00 4.44
292 293 2.993899 CACTAAGATCGCTCAAAACCGT 59.006 45.455 0.00 0.00 0.00 4.83
293 294 2.993899 ACTAAGATCGCTCAAAACCGTG 59.006 45.455 0.00 0.00 0.00 4.94
294 295 2.163818 AAGATCGCTCAAAACCGTGA 57.836 45.000 0.00 0.00 0.00 4.35
295 296 1.429463 AGATCGCTCAAAACCGTGAC 58.571 50.000 0.00 0.00 0.00 3.67
296 297 0.442699 GATCGCTCAAAACCGTGACC 59.557 55.000 0.00 0.00 0.00 4.02
297 298 0.250124 ATCGCTCAAAACCGTGACCA 60.250 50.000 0.00 0.00 0.00 4.02
298 299 0.462225 TCGCTCAAAACCGTGACCAA 60.462 50.000 0.00 0.00 0.00 3.67
299 300 0.041312 CGCTCAAAACCGTGACCAAG 60.041 55.000 0.00 0.00 0.00 3.61
300 301 1.305201 GCTCAAAACCGTGACCAAGA 58.695 50.000 0.00 0.00 0.00 3.02
301 302 1.673920 GCTCAAAACCGTGACCAAGAA 59.326 47.619 0.00 0.00 0.00 2.52
302 303 2.540973 GCTCAAAACCGTGACCAAGAAC 60.541 50.000 0.00 0.00 0.00 3.01
303 304 1.666700 TCAAAACCGTGACCAAGAACG 59.333 47.619 0.00 0.00 39.48 3.95
304 305 1.399089 CAAAACCGTGACCAAGAACGT 59.601 47.619 0.00 0.00 38.11 3.99
305 306 2.600470 AAACCGTGACCAAGAACGTA 57.400 45.000 0.00 0.00 38.11 3.57
306 307 2.825861 AACCGTGACCAAGAACGTAT 57.174 45.000 0.00 0.00 38.11 3.06
307 308 2.358939 ACCGTGACCAAGAACGTATC 57.641 50.000 0.00 0.00 38.11 2.24
308 309 1.891150 ACCGTGACCAAGAACGTATCT 59.109 47.619 0.00 0.00 41.32 1.98
317 318 3.672767 AAGAACGTATCTTGTCCGGTT 57.327 42.857 0.00 0.00 46.71 4.44
318 319 3.227810 AGAACGTATCTTGTCCGGTTC 57.772 47.619 0.00 0.00 33.39 3.62
319 320 2.094338 AGAACGTATCTTGTCCGGTTCC 60.094 50.000 0.00 0.00 33.39 3.62
320 321 1.259609 ACGTATCTTGTCCGGTTCCA 58.740 50.000 0.00 0.00 0.00 3.53
321 322 1.829222 ACGTATCTTGTCCGGTTCCAT 59.171 47.619 0.00 0.00 0.00 3.41
322 323 2.235402 ACGTATCTTGTCCGGTTCCATT 59.765 45.455 0.00 0.00 0.00 3.16
323 324 3.448301 ACGTATCTTGTCCGGTTCCATTA 59.552 43.478 0.00 0.00 0.00 1.90
324 325 3.800506 CGTATCTTGTCCGGTTCCATTAC 59.199 47.826 0.00 0.00 0.00 1.89
325 326 4.441079 CGTATCTTGTCCGGTTCCATTACT 60.441 45.833 0.00 0.00 0.00 2.24
326 327 4.569719 ATCTTGTCCGGTTCCATTACTT 57.430 40.909 0.00 0.00 0.00 2.24
327 328 3.670625 TCTTGTCCGGTTCCATTACTTG 58.329 45.455 0.00 0.00 0.00 3.16
328 329 3.325425 TCTTGTCCGGTTCCATTACTTGA 59.675 43.478 0.00 0.00 0.00 3.02
329 330 3.992943 TGTCCGGTTCCATTACTTGAT 57.007 42.857 0.00 0.00 0.00 2.57
330 331 5.188163 TCTTGTCCGGTTCCATTACTTGATA 59.812 40.000 0.00 0.00 0.00 2.15
331 332 5.018539 TGTCCGGTTCCATTACTTGATAG 57.981 43.478 0.00 0.00 0.00 2.08
332 333 4.468510 TGTCCGGTTCCATTACTTGATAGT 59.531 41.667 0.00 0.00 38.44 2.12
333 334 4.809426 GTCCGGTTCCATTACTTGATAGTG 59.191 45.833 0.00 0.00 35.78 2.74
334 335 3.560068 CCGGTTCCATTACTTGATAGTGC 59.440 47.826 0.00 0.00 35.78 4.40
335 336 4.188462 CGGTTCCATTACTTGATAGTGCA 58.812 43.478 0.00 0.00 35.78 4.57
336 337 4.634004 CGGTTCCATTACTTGATAGTGCAA 59.366 41.667 0.00 0.00 35.78 4.08
345 346 2.654749 TGATAGTGCAAGTCGTCTGG 57.345 50.000 0.00 0.00 0.00 3.86
346 347 1.893137 TGATAGTGCAAGTCGTCTGGT 59.107 47.619 0.00 0.00 0.00 4.00
347 348 2.299013 TGATAGTGCAAGTCGTCTGGTT 59.701 45.455 0.00 0.00 0.00 3.67
348 349 2.902705 TAGTGCAAGTCGTCTGGTTT 57.097 45.000 0.00 0.00 0.00 3.27
349 350 1.583054 AGTGCAAGTCGTCTGGTTTC 58.417 50.000 0.00 0.00 0.00 2.78
350 351 0.232303 GTGCAAGTCGTCTGGTTTCG 59.768 55.000 0.00 0.00 0.00 3.46
351 352 0.103390 TGCAAGTCGTCTGGTTTCGA 59.897 50.000 0.00 0.00 0.00 3.71
352 353 1.270094 TGCAAGTCGTCTGGTTTCGAT 60.270 47.619 0.00 0.00 38.32 3.59
353 354 1.126846 GCAAGTCGTCTGGTTTCGATG 59.873 52.381 0.00 0.00 38.32 3.84
354 355 2.404215 CAAGTCGTCTGGTTTCGATGT 58.596 47.619 0.00 0.00 38.32 3.06
355 356 2.800544 CAAGTCGTCTGGTTTCGATGTT 59.199 45.455 0.00 0.00 38.32 2.71
356 357 2.404215 AGTCGTCTGGTTTCGATGTTG 58.596 47.619 0.00 0.00 38.32 3.33
357 358 2.035449 AGTCGTCTGGTTTCGATGTTGA 59.965 45.455 0.00 0.00 38.32 3.18
358 359 2.408704 GTCGTCTGGTTTCGATGTTGAG 59.591 50.000 0.00 0.00 38.32 3.02
359 360 2.295070 TCGTCTGGTTTCGATGTTGAGA 59.705 45.455 0.00 0.00 0.00 3.27
360 361 3.057019 CGTCTGGTTTCGATGTTGAGAA 58.943 45.455 0.00 0.00 0.00 2.87
361 362 3.493129 CGTCTGGTTTCGATGTTGAGAAA 59.507 43.478 0.00 0.00 34.40 2.52
368 369 6.675515 GTTTCGATGTTGAGAAACCAAATC 57.324 37.500 9.21 0.00 46.11 2.17
369 370 6.438763 GTTTCGATGTTGAGAAACCAAATCT 58.561 36.000 9.21 0.00 46.11 2.40
370 371 7.581476 GTTTCGATGTTGAGAAACCAAATCTA 58.419 34.615 9.21 0.00 46.11 1.98
371 372 7.737972 TTCGATGTTGAGAAACCAAATCTAA 57.262 32.000 0.00 0.00 0.00 2.10
372 373 7.737972 TCGATGTTGAGAAACCAAATCTAAA 57.262 32.000 0.00 0.00 0.00 1.85
373 374 7.581476 TCGATGTTGAGAAACCAAATCTAAAC 58.419 34.615 0.00 0.00 38.33 2.01
374 375 7.444183 TCGATGTTGAGAAACCAAATCTAAACT 59.556 33.333 5.60 0.00 38.56 2.66
375 376 7.746475 CGATGTTGAGAAACCAAATCTAAACTC 59.254 37.037 5.60 0.00 38.56 3.01
376 377 7.272037 TGTTGAGAAACCAAATCTAAACTCC 57.728 36.000 5.60 0.00 38.56 3.85
377 378 6.831353 TGTTGAGAAACCAAATCTAAACTCCA 59.169 34.615 5.60 0.00 38.56 3.86
378 379 7.505585 TGTTGAGAAACCAAATCTAAACTCCAT 59.494 33.333 5.60 0.00 38.56 3.41
379 380 8.360390 GTTGAGAAACCAAATCTAAACTCCATT 58.640 33.333 0.00 0.00 35.98 3.16
380 381 9.581289 TTGAGAAACCAAATCTAAACTCCATTA 57.419 29.630 0.00 0.00 0.00 1.90
381 382 9.581289 TGAGAAACCAAATCTAAACTCCATTAA 57.419 29.630 0.00 0.00 0.00 1.40
387 388 9.981114 ACCAAATCTAAACTCCATTAAAAGTTG 57.019 29.630 3.01 0.00 35.93 3.16
435 436 9.771534 TTTTTAAAATAAGACAGACAAATGGGG 57.228 29.630 0.55 0.00 0.00 4.96
436 437 8.713708 TTTAAAATAAGACAGACAAATGGGGA 57.286 30.769 0.00 0.00 0.00 4.81
437 438 6.840780 AAAATAAGACAGACAAATGGGGAG 57.159 37.500 0.00 0.00 0.00 4.30
440 441 1.912043 AGACAGACAAATGGGGAGAGG 59.088 52.381 0.00 0.00 0.00 3.69
450 451 2.395353 GGGGAGAGGGGAAATGGGG 61.395 68.421 0.00 0.00 0.00 4.96
468 469 1.467920 GGGCAGACAAATGAAGAGGG 58.532 55.000 0.00 0.00 0.00 4.30
469 470 1.467920 GGCAGACAAATGAAGAGGGG 58.532 55.000 0.00 0.00 0.00 4.79
470 471 1.272147 GGCAGACAAATGAAGAGGGGT 60.272 52.381 0.00 0.00 0.00 4.95
471 472 2.026262 GGCAGACAAATGAAGAGGGGTA 60.026 50.000 0.00 0.00 0.00 3.69
480 481 5.536497 AATGAAGAGGGGTAAAATGAGGT 57.464 39.130 0.00 0.00 0.00 3.85
483 484 2.547990 AGAGGGGTAAAATGAGGTCGT 58.452 47.619 0.00 0.00 0.00 4.34
485 486 2.235402 GAGGGGTAAAATGAGGTCGTCA 59.765 50.000 0.00 0.00 40.38 4.35
497 498 5.601778 ATGAGGTCGTCATTGTAGGGACAA 61.602 45.833 2.11 0.00 44.05 3.18
510 511 3.032265 AGGGACAAATAAATGGGGCTC 57.968 47.619 0.00 0.00 0.00 4.70
514 522 3.253432 GGACAAATAAATGGGGCTCGATC 59.747 47.826 0.00 0.00 0.00 3.69
522 530 1.810030 GGGGCTCGATCGTGTGAAC 60.810 63.158 15.94 5.09 0.00 3.18
529 537 1.271102 TCGATCGTGTGAACACATGGA 59.729 47.619 21.68 16.52 46.75 3.41
534 542 1.160137 GTGTGAACACATGGAGGCTC 58.840 55.000 5.78 5.78 45.75 4.70
535 543 1.059098 TGTGAACACATGGAGGCTCT 58.941 50.000 15.23 0.00 36.21 4.09
536 544 2.028112 GTGTGAACACATGGAGGCTCTA 60.028 50.000 15.23 9.13 45.75 2.43
669 679 2.238646 CCAGGCATTATTATCCCGGCTA 59.761 50.000 0.00 0.00 0.00 3.93
670 680 3.270877 CAGGCATTATTATCCCGGCTAC 58.729 50.000 0.00 0.00 0.00 3.58
739 1272 8.877864 TCCATTCACTCACCTTAAATAATTGT 57.122 30.769 0.00 0.00 0.00 2.71
759 1292 3.380004 TGTCGCATAAACCATTTCCATCC 59.620 43.478 0.00 0.00 0.00 3.51
945 1498 0.783162 CGGTTTTCTTAACGCGCGAC 60.783 55.000 39.36 21.08 0.00 5.19
1062 1616 2.285743 GAGGTGGAGGAGGGGCTT 60.286 66.667 0.00 0.00 0.00 4.35
1302 1856 2.430921 GACGTCCAGCACCTCACG 60.431 66.667 3.51 0.00 38.24 4.35
1491 2091 4.621460 GCGCGTATATCTCTTATGCTTTGA 59.379 41.667 8.43 0.00 30.91 2.69
1529 2133 4.717629 CGAGCTTCGCCGTCACCA 62.718 66.667 0.00 0.00 31.14 4.17
1530 2134 2.811317 GAGCTTCGCCGTCACCAG 60.811 66.667 0.00 0.00 0.00 4.00
1595 2199 2.304470 AGTTTTTGGGTGGCAGTTTGTT 59.696 40.909 0.00 0.00 0.00 2.83
1798 2666 0.257039 ACTTGTGGATGCCTGGATCC 59.743 55.000 4.20 4.20 42.23 3.36
1813 2681 3.989104 ATCCGAGTTTGGATAGGCG 57.011 52.632 0.00 0.00 46.95 5.52
1847 2715 3.222173 TGGTGTGTGGCTTCACTTTAT 57.778 42.857 12.67 0.00 41.73 1.40
1870 2738 9.743581 TTATAAATATTCGATTACCCTTTCCCC 57.256 33.333 0.00 0.00 0.00 4.81
1878 2803 0.720232 TACCCTTTCCCCTGCTCCTA 59.280 55.000 0.00 0.00 0.00 2.94
1991 3068 7.687941 AGTAAATCGATTTCAAGGTGACATT 57.312 32.000 25.89 1.08 0.00 2.71
2138 3216 2.800096 CGCAAAATCGCTTGTGCTT 58.200 47.368 12.03 0.00 36.97 3.91
2153 3231 7.116805 TCGCTTGTGCTTATTACATATCTGATG 59.883 37.037 0.00 0.00 36.97 3.07
2215 3341 9.961265 CAATATTTTGTCAATGCAGATGATACT 57.039 29.630 8.09 0.00 0.00 2.12
2346 3478 1.120530 AGAAGAACAGTCCACGTGGT 58.879 50.000 32.74 14.73 36.34 4.16
2838 4185 6.727824 ATAACTGCATGTTCTGAAGTACAC 57.272 37.500 5.04 0.00 43.53 2.90
3224 4768 8.635765 AATTAATCAGGTATGTGTCTGTTGTT 57.364 30.769 0.00 0.00 33.13 2.83
3235 4779 3.783943 GTGTCTGTTGTTAGCGTTGTTTG 59.216 43.478 0.00 0.00 0.00 2.93
3258 4802 9.496873 TTTGTACGATCTTCCTTATTTCAGAAA 57.503 29.630 0.00 0.00 0.00 2.52
3393 4953 8.282592 CCACCACATTTATGTAGATATCGTTTG 58.717 37.037 0.00 0.00 39.39 2.93
3948 5589 1.539157 CCCCTTGCTGTTTCTTCCTC 58.461 55.000 0.00 0.00 0.00 3.71
4059 5700 2.981859 AGTACTTATCCCTTGTGCGG 57.018 50.000 0.00 0.00 0.00 5.69
4083 5774 8.288913 CGGCACAATGGATTTTTCTTTATTTTT 58.711 29.630 0.00 0.00 0.00 1.94
4238 5999 2.349886 GAGCTATTCCAAACAGCACTCG 59.650 50.000 0.00 0.00 37.78 4.18
4522 6382 1.610673 TGAGGGAGCAGGACAGGAC 60.611 63.158 0.00 0.00 0.00 3.85
4549 6409 4.837093 TGCCAAAAGTATACCTGTAGCT 57.163 40.909 0.00 0.00 0.00 3.32
4855 6971 8.794553 AGTCTTACCTCATACGGATTATTAGTG 58.205 37.037 0.00 0.00 0.00 2.74
4858 6974 5.539048 ACCTCATACGGATTATTAGTGTGC 58.461 41.667 0.00 0.00 0.00 4.57
4908 7024 7.612677 TGGACCTCACTTAAGAATTCTCTAAC 58.387 38.462 8.78 0.00 0.00 2.34
5054 7170 2.158914 TGTTGAGTGTGACATCAGCAGT 60.159 45.455 9.24 0.00 32.60 4.40
5253 7369 7.830848 AGTATAACTTCCATATGCCCCTATT 57.169 36.000 0.00 0.00 0.00 1.73
5254 7370 8.232098 AGTATAACTTCCATATGCCCCTATTT 57.768 34.615 0.00 0.00 0.00 1.40
5302 7418 1.539929 GGACTCTCGCTTCATCATGGG 60.540 57.143 0.00 0.00 0.00 4.00
5411 7527 1.549620 TGAAATGATGCGGCAAATGGT 59.450 42.857 6.82 0.00 0.00 3.55
5525 7642 3.667497 ATCGTCATAGGTGGTAGCATG 57.333 47.619 0.00 0.00 0.00 4.06
5539 7656 3.258123 GGTAGCATGGTCCAAAACACAAT 59.742 43.478 0.00 0.00 0.00 2.71
5625 7743 1.600013 ACGCAAATGTCGTGCACTTTA 59.400 42.857 16.19 0.43 42.33 1.85
5713 8315 8.507249 CGAAATTGTTCTTTATCTTTGGTCTCT 58.493 33.333 0.00 0.00 0.00 3.10
5746 8348 1.120530 GGACTCGGTGTGTGGGATAT 58.879 55.000 0.00 0.00 0.00 1.63
5747 8349 1.202533 GGACTCGGTGTGTGGGATATG 60.203 57.143 0.00 0.00 0.00 1.78
5752 8354 1.202533 CGGTGTGTGGGATATGGAGAC 60.203 57.143 0.00 0.00 0.00 3.36
5759 8361 2.632996 GTGGGATATGGAGACGAATGGA 59.367 50.000 0.00 0.00 0.00 3.41
5768 8370 2.488153 GGAGACGAATGGAAAGTTTGGG 59.512 50.000 0.00 0.00 0.00 4.12
5786 8542 3.754965 TGGGGAGTTCTCAACATTCTTG 58.245 45.455 2.24 0.00 0.00 3.02
5804 8560 4.026052 TCTTGACCTCTGATGCATACTGA 58.974 43.478 0.00 2.61 0.00 3.41
6006 8762 4.082523 GGCTACCTGTGCCTGCGA 62.083 66.667 0.00 0.00 46.38 5.10
6086 8842 8.475331 AATAGACAATAGTGGTACGAGTTTTG 57.525 34.615 12.20 12.20 0.00 2.44
6108 8865 6.636562 TGTTTAAACTTCGGGCTATTTTCA 57.363 33.333 18.72 0.00 0.00 2.69
6188 8945 2.393764 GTTTTGCTCCGATGTGTTTGG 58.606 47.619 0.00 0.00 0.00 3.28
6190 8947 1.523154 TTGCTCCGATGTGTTTGGCC 61.523 55.000 0.00 0.00 0.00 5.36
6233 8990 6.079151 GTGAGTAATAAACACACGCTACTG 57.921 41.667 0.00 0.00 39.40 2.74
6364 9125 0.171231 TCGTTCTGAGAGATGGTGCG 59.829 55.000 0.00 0.00 0.00 5.34
6401 9163 3.242944 CGTGTCAGTCGGTTTGCATATAG 59.757 47.826 0.00 0.00 0.00 1.31
6406 9168 3.039011 AGTCGGTTTGCATATAGGGAGT 58.961 45.455 0.00 0.00 0.00 3.85
6408 9170 4.038883 AGTCGGTTTGCATATAGGGAGTAC 59.961 45.833 0.00 0.00 0.00 2.73
6447 9210 2.198906 ATCGGCGTACGTTCCGTTCA 62.199 55.000 26.32 13.31 45.44 3.18
6518 9281 1.057361 GCAATGAGTTCGCGTCGAC 59.943 57.895 5.77 5.18 34.89 4.20
6573 9492 1.544691 TCAGCGGGTCTGTAACTTCTC 59.455 52.381 0.00 0.00 43.32 2.87
6593 9512 3.399330 TCGATGGTTTCTCCTGTTTGAC 58.601 45.455 0.00 0.00 37.07 3.18
6598 9517 2.879026 GGTTTCTCCTGTTTGACACCTC 59.121 50.000 0.00 0.00 32.15 3.85
6599 9518 3.433740 GGTTTCTCCTGTTTGACACCTCT 60.434 47.826 0.00 0.00 32.15 3.69
6600 9519 3.475566 TTCTCCTGTTTGACACCTCTG 57.524 47.619 0.00 0.00 0.00 3.35
6668 9588 2.162319 TGACGTTATCACAGCTGCAA 57.838 45.000 15.27 1.62 29.99 4.08
6740 9660 3.299977 ACGGCCAGCGTGACAGTA 61.300 61.111 2.24 0.00 0.00 2.74
6747 9667 1.135373 CCAGCGTGACAGTAATCGACT 60.135 52.381 0.00 0.00 39.82 4.18
6759 9679 3.880591 TCGACTCCGACGACGATT 58.119 55.556 9.28 0.00 40.30 3.34
6763 9683 2.099638 CTCCGACGACGATTGCGA 59.900 61.111 9.28 0.00 42.66 5.10
6964 9890 1.000233 GACGTAGACGCGTTCAAGCA 61.000 55.000 15.53 0.00 45.79 3.91
7130 10056 1.142688 AGGGCAACAAGTCTGGGGAT 61.143 55.000 0.00 0.00 39.74 3.85
7131 10057 0.967380 GGGCAACAAGTCTGGGGATG 60.967 60.000 0.00 0.00 39.74 3.51
7132 10058 1.598701 GGCAACAAGTCTGGGGATGC 61.599 60.000 0.00 0.00 0.00 3.91
7133 10059 1.926511 GCAACAAGTCTGGGGATGCG 61.927 60.000 0.00 0.00 0.00 4.73
7134 10060 1.002134 AACAAGTCTGGGGATGCGG 60.002 57.895 0.00 0.00 0.00 5.69
7135 10061 2.825836 CAAGTCTGGGGATGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
7136 10062 4.473520 AAGTCTGGGGATGCGGCG 62.474 66.667 0.51 0.51 0.00 6.46
7268 10194 2.054140 TTTGGAAGTGAACGTGCCGC 62.054 55.000 0.00 0.00 0.00 6.53
7270 10196 4.719616 GAAGTGAACGTGCCGCGC 62.720 66.667 0.00 0.00 46.11 6.86
7321 10247 1.335142 GCGGTGCGTTTTCATTGGTTA 60.335 47.619 0.00 0.00 0.00 2.85
7358 10284 2.254546 TAAGGGCTTGTGGCATATCG 57.745 50.000 0.00 0.00 44.01 2.92
7359 10285 1.103398 AAGGGCTTGTGGCATATCGC 61.103 55.000 0.00 0.00 44.01 4.58
7378 10304 6.695292 ATCGCATTGTTTGTTCATTCTTTC 57.305 33.333 0.00 0.00 0.00 2.62
7432 10361 9.479549 AAAAGACAATATATGATGGTTTGGTCT 57.520 29.630 0.00 0.00 0.00 3.85
7524 10454 0.600557 CAGAGCGACAAGTGGACTCT 59.399 55.000 0.00 0.00 38.22 3.24
7528 10459 1.569479 GCGACAAGTGGACTCTTGGC 61.569 60.000 15.83 12.78 46.49 4.52
7574 10510 0.540365 CAAAGAGCCCCTGCCTTTCA 60.540 55.000 0.00 0.00 36.48 2.69
7586 10522 4.952335 CCCTGCCTTTCATTAGAATCAACT 59.048 41.667 0.00 0.00 32.89 3.16
7658 10612 2.301346 CCCATCCCAGACAAATAGCAC 58.699 52.381 0.00 0.00 0.00 4.40
7659 10613 2.092212 CCCATCCCAGACAAATAGCACT 60.092 50.000 0.00 0.00 0.00 4.40
7661 10615 3.379372 CCATCCCAGACAAATAGCACTTG 59.621 47.826 0.00 0.00 0.00 3.16
7662 10616 3.788227 TCCCAGACAAATAGCACTTGT 57.212 42.857 0.00 0.00 39.69 3.16
7668 10622 4.569801 GACAAATAGCACTTGTCGTCTC 57.430 45.455 9.06 0.00 42.25 3.36
7669 10623 2.987149 ACAAATAGCACTTGTCGTCTCG 59.013 45.455 0.00 0.00 31.29 4.04
7670 10624 1.630148 AATAGCACTTGTCGTCTCGC 58.370 50.000 0.00 0.00 0.00 5.03
7671 10625 0.179134 ATAGCACTTGTCGTCTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
7672 10626 2.209064 TAGCACTTGTCGTCTCGCCC 62.209 60.000 0.00 0.00 0.00 6.13
7673 10627 2.432628 CACTTGTCGTCTCGCCCC 60.433 66.667 0.00 0.00 0.00 5.80
7674 10628 3.692406 ACTTGTCGTCTCGCCCCC 61.692 66.667 0.00 0.00 0.00 5.40
7675 10629 3.382832 CTTGTCGTCTCGCCCCCT 61.383 66.667 0.00 0.00 0.00 4.79
7676 10630 3.358076 CTTGTCGTCTCGCCCCCTC 62.358 68.421 0.00 0.00 0.00 4.30
7728 10748 2.483745 CGCCGTCTAGCAAGTCGA 59.516 61.111 0.00 0.00 36.54 4.20
7836 10869 3.072476 TCTGGCATATAGGGTTAGGCAAC 59.928 47.826 0.00 0.00 34.26 4.17
7900 10937 2.420547 CCATTGAGAGCTCCGATTGGAA 60.421 50.000 10.93 0.00 45.87 3.53
7995 11032 3.071023 TGTTGACGGTGGAAGAAGATTCT 59.929 43.478 0.00 0.00 39.74 2.40
8121 11172 4.761235 ATGTGATTGAACTTGCTCAGTG 57.239 40.909 0.00 0.00 35.12 3.66
8122 11173 3.544684 TGTGATTGAACTTGCTCAGTGT 58.455 40.909 0.00 0.00 35.12 3.55
8123 11174 3.313249 TGTGATTGAACTTGCTCAGTGTG 59.687 43.478 0.00 0.00 35.12 3.82
8124 11175 2.291465 TGATTGAACTTGCTCAGTGTGC 59.709 45.455 10.23 10.23 35.12 4.57
8126 11177 0.107263 TGAACTTGCTCAGTGTGCCA 60.107 50.000 14.25 2.81 35.12 4.92
8219 11327 7.676947 TGTAGTGTTTAAGTAGCTCAGGAATT 58.323 34.615 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.439500 CATGGATTTGAAAAGGTATGTGAATTT 57.561 29.630 0.00 0.00 0.00 1.82
34 35 8.814931 TCATGGATTTGAAAAGGTATGTGAATT 58.185 29.630 0.00 0.00 0.00 2.17
35 36 8.253113 GTCATGGATTTGAAAAGGTATGTGAAT 58.747 33.333 0.00 0.00 0.00 2.57
36 37 7.451255 AGTCATGGATTTGAAAAGGTATGTGAA 59.549 33.333 0.00 0.00 0.00 3.18
37 38 6.947733 AGTCATGGATTTGAAAAGGTATGTGA 59.052 34.615 0.00 0.00 0.00 3.58
38 39 7.161773 AGTCATGGATTTGAAAAGGTATGTG 57.838 36.000 0.00 0.00 0.00 3.21
39 40 7.781324 AAGTCATGGATTTGAAAAGGTATGT 57.219 32.000 0.00 0.00 0.00 2.29
40 41 9.492973 AAAAAGTCATGGATTTGAAAAGGTATG 57.507 29.630 0.00 0.00 0.00 2.39
102 103 8.939201 TGATAAACTTGCATGAACTTGAAAAA 57.061 26.923 6.60 0.00 0.00 1.94
103 104 8.939201 TTGATAAACTTGCATGAACTTGAAAA 57.061 26.923 6.60 0.00 0.00 2.29
104 105 8.939201 TTTGATAAACTTGCATGAACTTGAAA 57.061 26.923 6.60 0.00 0.00 2.69
105 106 9.195411 GATTTGATAAACTTGCATGAACTTGAA 57.805 29.630 6.60 0.00 0.00 2.69
106 107 7.814107 GGATTTGATAAACTTGCATGAACTTGA 59.186 33.333 6.60 0.00 0.00 3.02
107 108 7.201376 CGGATTTGATAAACTTGCATGAACTTG 60.201 37.037 6.60 0.00 0.00 3.16
108 109 6.808212 CGGATTTGATAAACTTGCATGAACTT 59.192 34.615 6.60 0.00 0.00 2.66
109 110 6.150976 TCGGATTTGATAAACTTGCATGAACT 59.849 34.615 6.60 0.00 0.00 3.01
110 111 6.321717 TCGGATTTGATAAACTTGCATGAAC 58.678 36.000 6.60 0.00 0.00 3.18
111 112 6.150976 ACTCGGATTTGATAAACTTGCATGAA 59.849 34.615 6.60 0.00 0.00 2.57
112 113 5.647658 ACTCGGATTTGATAAACTTGCATGA 59.352 36.000 6.60 0.00 0.00 3.07
113 114 5.883661 ACTCGGATTTGATAAACTTGCATG 58.116 37.500 0.00 0.00 0.00 4.06
114 115 6.823689 AGTACTCGGATTTGATAAACTTGCAT 59.176 34.615 0.00 0.00 0.00 3.96
115 116 6.170506 AGTACTCGGATTTGATAAACTTGCA 58.829 36.000 0.00 0.00 0.00 4.08
116 117 6.663944 AGTACTCGGATTTGATAAACTTGC 57.336 37.500 0.00 0.00 0.00 4.01
117 118 9.893305 AAAAAGTACTCGGATTTGATAAACTTG 57.107 29.630 0.00 0.00 0.00 3.16
156 157 9.651913 ACAAGTACATGAATTTCAAAAACAGTT 57.348 25.926 4.87 0.00 0.00 3.16
157 158 9.651913 AACAAGTACATGAATTTCAAAAACAGT 57.348 25.926 4.87 2.99 0.00 3.55
165 166 9.474920 GGAATTGAAACAAGTACATGAATTTCA 57.525 29.630 4.87 8.63 35.01 2.69
166 167 9.474920 TGGAATTGAAACAAGTACATGAATTTC 57.525 29.630 4.87 6.22 0.00 2.17
167 168 9.260002 GTGGAATTGAAACAAGTACATGAATTT 57.740 29.630 4.87 0.00 0.00 1.82
168 169 7.594758 CGTGGAATTGAAACAAGTACATGAATT 59.405 33.333 4.87 0.49 0.00 2.17
169 170 7.083858 CGTGGAATTGAAACAAGTACATGAAT 58.916 34.615 4.87 0.00 0.00 2.57
170 171 6.038825 ACGTGGAATTGAAACAAGTACATGAA 59.961 34.615 18.66 0.00 0.00 2.57
171 172 5.529430 ACGTGGAATTGAAACAAGTACATGA 59.471 36.000 18.66 0.00 0.00 3.07
172 173 5.757886 ACGTGGAATTGAAACAAGTACATG 58.242 37.500 12.66 12.66 0.00 3.21
173 174 6.708949 AGTACGTGGAATTGAAACAAGTACAT 59.291 34.615 17.52 5.26 45.79 2.29
174 175 6.050432 AGTACGTGGAATTGAAACAAGTACA 58.950 36.000 17.52 0.00 45.79 2.90
175 176 6.535274 AGTACGTGGAATTGAAACAAGTAC 57.465 37.500 0.00 10.61 44.64 2.73
176 177 7.556733 AAAGTACGTGGAATTGAAACAAGTA 57.443 32.000 0.00 0.00 0.00 2.24
177 178 6.445357 AAAGTACGTGGAATTGAAACAAGT 57.555 33.333 0.00 0.00 0.00 3.16
178 179 6.970043 TGAAAAGTACGTGGAATTGAAACAAG 59.030 34.615 0.00 0.00 0.00 3.16
179 180 6.853720 TGAAAAGTACGTGGAATTGAAACAA 58.146 32.000 0.00 0.00 0.00 2.83
180 181 6.438259 TGAAAAGTACGTGGAATTGAAACA 57.562 33.333 0.00 0.00 0.00 2.83
181 182 7.743520 TTTGAAAAGTACGTGGAATTGAAAC 57.256 32.000 0.00 0.00 0.00 2.78
182 183 7.813148 TGTTTTGAAAAGTACGTGGAATTGAAA 59.187 29.630 0.00 0.00 0.00 2.69
183 184 7.313646 TGTTTTGAAAAGTACGTGGAATTGAA 58.686 30.769 0.00 0.00 0.00 2.69
184 185 6.853720 TGTTTTGAAAAGTACGTGGAATTGA 58.146 32.000 0.00 0.00 0.00 2.57
185 186 7.692908 ATGTTTTGAAAAGTACGTGGAATTG 57.307 32.000 0.00 0.00 0.00 2.32
186 187 9.240159 GTAATGTTTTGAAAAGTACGTGGAATT 57.760 29.630 0.00 0.00 0.00 2.17
187 188 7.588488 CGTAATGTTTTGAAAAGTACGTGGAAT 59.412 33.333 15.00 0.00 0.00 3.01
188 189 6.906143 CGTAATGTTTTGAAAAGTACGTGGAA 59.094 34.615 15.00 0.00 0.00 3.53
189 190 6.420588 CGTAATGTTTTGAAAAGTACGTGGA 58.579 36.000 15.00 0.00 0.00 4.02
190 191 5.114423 GCGTAATGTTTTGAAAAGTACGTGG 59.886 40.000 20.15 4.22 0.00 4.94
191 192 5.164452 CGCGTAATGTTTTGAAAAGTACGTG 60.164 40.000 20.15 19.45 33.74 4.49
192 193 4.899616 CGCGTAATGTTTTGAAAAGTACGT 59.100 37.500 20.15 0.00 0.00 3.57
193 194 5.131890 TCGCGTAATGTTTTGAAAAGTACG 58.868 37.500 17.27 17.27 0.00 3.67
194 195 6.129639 GGTTCGCGTAATGTTTTGAAAAGTAC 60.130 38.462 5.77 0.00 0.00 2.73
195 196 5.908499 GGTTCGCGTAATGTTTTGAAAAGTA 59.092 36.000 5.77 0.00 0.00 2.24
196 197 4.736307 GGTTCGCGTAATGTTTTGAAAAGT 59.264 37.500 5.77 0.00 0.00 2.66
197 198 4.973663 AGGTTCGCGTAATGTTTTGAAAAG 59.026 37.500 5.77 0.00 0.00 2.27
198 199 4.735822 CAGGTTCGCGTAATGTTTTGAAAA 59.264 37.500 5.77 0.00 0.00 2.29
199 200 4.283678 CAGGTTCGCGTAATGTTTTGAAA 58.716 39.130 5.77 0.00 0.00 2.69
200 201 3.304123 CCAGGTTCGCGTAATGTTTTGAA 60.304 43.478 5.77 0.00 0.00 2.69
201 202 2.224549 CCAGGTTCGCGTAATGTTTTGA 59.775 45.455 5.77 0.00 0.00 2.69
202 203 2.224549 TCCAGGTTCGCGTAATGTTTTG 59.775 45.455 5.77 0.00 0.00 2.44
203 204 2.496111 TCCAGGTTCGCGTAATGTTTT 58.504 42.857 5.77 0.00 0.00 2.43
204 205 2.172851 TCCAGGTTCGCGTAATGTTT 57.827 45.000 5.77 0.00 0.00 2.83
205 206 2.172851 TTCCAGGTTCGCGTAATGTT 57.827 45.000 5.77 0.00 0.00 2.71
206 207 2.172851 TTTCCAGGTTCGCGTAATGT 57.827 45.000 5.77 0.00 0.00 2.71
207 208 3.058501 ACTTTTTCCAGGTTCGCGTAATG 60.059 43.478 5.77 0.00 0.00 1.90
208 209 3.143728 ACTTTTTCCAGGTTCGCGTAAT 58.856 40.909 5.77 0.00 0.00 1.89
209 210 2.563702 ACTTTTTCCAGGTTCGCGTAA 58.436 42.857 5.77 0.00 0.00 3.18
210 211 2.243602 ACTTTTTCCAGGTTCGCGTA 57.756 45.000 5.77 0.00 0.00 4.42
211 212 1.869132 GTACTTTTTCCAGGTTCGCGT 59.131 47.619 5.77 0.00 0.00 6.01
212 213 1.136446 CGTACTTTTTCCAGGTTCGCG 60.136 52.381 0.00 0.00 0.00 5.87
213 214 1.869132 ACGTACTTTTTCCAGGTTCGC 59.131 47.619 0.00 0.00 0.00 4.70
214 215 3.125316 TCACGTACTTTTTCCAGGTTCG 58.875 45.455 0.00 0.00 0.00 3.95
215 216 5.684550 ATTCACGTACTTTTTCCAGGTTC 57.315 39.130 0.00 0.00 0.00 3.62
216 217 6.095720 TCAAATTCACGTACTTTTTCCAGGTT 59.904 34.615 0.00 0.00 0.00 3.50
217 218 5.591067 TCAAATTCACGTACTTTTTCCAGGT 59.409 36.000 0.00 0.00 0.00 4.00
218 219 6.067263 TCAAATTCACGTACTTTTTCCAGG 57.933 37.500 0.00 0.00 0.00 4.45
219 220 7.114811 CCAATCAAATTCACGTACTTTTTCCAG 59.885 37.037 0.00 0.00 0.00 3.86
220 221 6.920758 CCAATCAAATTCACGTACTTTTTCCA 59.079 34.615 0.00 0.00 0.00 3.53
221 222 6.128929 GCCAATCAAATTCACGTACTTTTTCC 60.129 38.462 0.00 0.00 0.00 3.13
222 223 6.419413 TGCCAATCAAATTCACGTACTTTTTC 59.581 34.615 0.00 0.00 0.00 2.29
223 224 6.276847 TGCCAATCAAATTCACGTACTTTTT 58.723 32.000 0.00 0.00 0.00 1.94
224 225 5.837437 TGCCAATCAAATTCACGTACTTTT 58.163 33.333 0.00 0.00 0.00 2.27
225 226 5.446143 TGCCAATCAAATTCACGTACTTT 57.554 34.783 0.00 0.00 0.00 2.66
226 227 5.401550 CATGCCAATCAAATTCACGTACTT 58.598 37.500 0.00 0.00 0.00 2.24
227 228 4.142403 CCATGCCAATCAAATTCACGTACT 60.142 41.667 0.00 0.00 0.00 2.73
228 229 4.104776 CCATGCCAATCAAATTCACGTAC 58.895 43.478 0.00 0.00 0.00 3.67
229 230 3.761218 ACCATGCCAATCAAATTCACGTA 59.239 39.130 0.00 0.00 0.00 3.57
230 231 2.562298 ACCATGCCAATCAAATTCACGT 59.438 40.909 0.00 0.00 0.00 4.49
231 232 3.235157 ACCATGCCAATCAAATTCACG 57.765 42.857 0.00 0.00 0.00 4.35
232 233 7.432350 TTTTTACCATGCCAATCAAATTCAC 57.568 32.000 0.00 0.00 0.00 3.18
253 254 3.697166 AGTGTTATCTCGCCCCATTTTT 58.303 40.909 0.00 0.00 0.00 1.94
254 255 3.366052 AGTGTTATCTCGCCCCATTTT 57.634 42.857 0.00 0.00 0.00 1.82
255 256 4.163458 TCTTAGTGTTATCTCGCCCCATTT 59.837 41.667 0.00 0.00 0.00 2.32
256 257 3.709653 TCTTAGTGTTATCTCGCCCCATT 59.290 43.478 0.00 0.00 0.00 3.16
257 258 3.305720 TCTTAGTGTTATCTCGCCCCAT 58.694 45.455 0.00 0.00 0.00 4.00
258 259 2.742348 TCTTAGTGTTATCTCGCCCCA 58.258 47.619 0.00 0.00 0.00 4.96
259 260 3.612004 CGATCTTAGTGTTATCTCGCCCC 60.612 52.174 0.00 0.00 0.00 5.80
260 261 3.566523 CGATCTTAGTGTTATCTCGCCC 58.433 50.000 0.00 0.00 0.00 6.13
261 262 2.981140 GCGATCTTAGTGTTATCTCGCC 59.019 50.000 2.86 0.00 42.90 5.54
263 264 5.096954 TGAGCGATCTTAGTGTTATCTCG 57.903 43.478 0.90 0.00 0.00 4.04
264 265 7.254151 GGTTTTGAGCGATCTTAGTGTTATCTC 60.254 40.741 0.90 0.00 0.00 2.75
265 266 6.535508 GGTTTTGAGCGATCTTAGTGTTATCT 59.464 38.462 0.90 0.00 0.00 1.98
266 267 6.508088 CGGTTTTGAGCGATCTTAGTGTTATC 60.508 42.308 0.90 0.00 0.00 1.75
267 268 5.291128 CGGTTTTGAGCGATCTTAGTGTTAT 59.709 40.000 0.90 0.00 0.00 1.89
268 269 4.624024 CGGTTTTGAGCGATCTTAGTGTTA 59.376 41.667 0.90 0.00 0.00 2.41
269 270 3.432252 CGGTTTTGAGCGATCTTAGTGTT 59.568 43.478 0.90 0.00 0.00 3.32
270 271 2.993899 CGGTTTTGAGCGATCTTAGTGT 59.006 45.455 0.90 0.00 0.00 3.55
271 272 2.993899 ACGGTTTTGAGCGATCTTAGTG 59.006 45.455 0.90 0.00 0.00 2.74
272 273 2.993899 CACGGTTTTGAGCGATCTTAGT 59.006 45.455 0.90 0.00 0.00 2.24
273 274 3.060895 GTCACGGTTTTGAGCGATCTTAG 59.939 47.826 0.90 0.00 0.00 2.18
274 275 2.991190 GTCACGGTTTTGAGCGATCTTA 59.009 45.455 0.90 0.00 0.00 2.10
275 276 1.798813 GTCACGGTTTTGAGCGATCTT 59.201 47.619 0.90 0.00 0.00 2.40
276 277 1.429463 GTCACGGTTTTGAGCGATCT 58.571 50.000 0.90 0.00 0.00 2.75
277 278 0.442699 GGTCACGGTTTTGAGCGATC 59.557 55.000 4.95 0.00 34.50 3.69
278 279 0.250124 TGGTCACGGTTTTGAGCGAT 60.250 50.000 4.95 0.00 45.26 4.58
279 280 0.462225 TTGGTCACGGTTTTGAGCGA 60.462 50.000 4.95 0.00 45.26 4.93
280 281 0.041312 CTTGGTCACGGTTTTGAGCG 60.041 55.000 0.00 0.00 45.26 5.03
281 282 1.305201 TCTTGGTCACGGTTTTGAGC 58.695 50.000 0.00 0.00 43.10 4.26
282 283 2.286184 CGTTCTTGGTCACGGTTTTGAG 60.286 50.000 0.00 0.00 32.58 3.02
283 284 1.666700 CGTTCTTGGTCACGGTTTTGA 59.333 47.619 0.00 0.00 32.58 2.69
284 285 1.399089 ACGTTCTTGGTCACGGTTTTG 59.601 47.619 0.00 0.00 40.84 2.44
285 286 1.741528 ACGTTCTTGGTCACGGTTTT 58.258 45.000 0.00 0.00 40.84 2.43
286 287 2.600470 TACGTTCTTGGTCACGGTTT 57.400 45.000 0.00 0.00 40.84 3.27
287 288 2.298163 AGATACGTTCTTGGTCACGGTT 59.702 45.455 0.00 0.00 40.84 4.44
288 289 1.891150 AGATACGTTCTTGGTCACGGT 59.109 47.619 0.00 0.00 40.84 4.83
289 290 2.649331 AGATACGTTCTTGGTCACGG 57.351 50.000 0.00 0.00 40.84 4.94
297 298 3.582780 GAACCGGACAAGATACGTTCTT 58.417 45.455 9.46 0.00 45.83 2.52
298 299 2.094338 GGAACCGGACAAGATACGTTCT 60.094 50.000 9.46 0.00 35.70 3.01
299 300 2.265683 GGAACCGGACAAGATACGTTC 58.734 52.381 9.46 0.00 0.00 3.95
300 301 1.619827 TGGAACCGGACAAGATACGTT 59.380 47.619 9.46 0.00 0.00 3.99
301 302 1.259609 TGGAACCGGACAAGATACGT 58.740 50.000 9.46 0.00 0.00 3.57
302 303 2.596904 ATGGAACCGGACAAGATACG 57.403 50.000 9.46 0.00 0.00 3.06
303 304 5.019785 AGTAATGGAACCGGACAAGATAC 57.980 43.478 9.46 9.34 0.00 2.24
304 305 5.188163 TCAAGTAATGGAACCGGACAAGATA 59.812 40.000 9.46 0.00 0.00 1.98
305 306 4.019681 TCAAGTAATGGAACCGGACAAGAT 60.020 41.667 9.46 0.00 0.00 2.40
306 307 3.325425 TCAAGTAATGGAACCGGACAAGA 59.675 43.478 9.46 0.00 0.00 3.02
307 308 3.670625 TCAAGTAATGGAACCGGACAAG 58.329 45.455 9.46 0.00 0.00 3.16
308 309 3.773418 TCAAGTAATGGAACCGGACAA 57.227 42.857 9.46 0.00 0.00 3.18
309 310 3.992943 ATCAAGTAATGGAACCGGACA 57.007 42.857 9.46 4.27 0.00 4.02
310 311 4.809426 CACTATCAAGTAATGGAACCGGAC 59.191 45.833 9.46 0.76 33.48 4.79
311 312 4.682320 GCACTATCAAGTAATGGAACCGGA 60.682 45.833 9.46 0.00 33.48 5.14
312 313 3.560068 GCACTATCAAGTAATGGAACCGG 59.440 47.826 0.00 0.00 33.48 5.28
313 314 4.188462 TGCACTATCAAGTAATGGAACCG 58.812 43.478 0.00 0.00 33.48 4.44
314 315 6.124088 CTTGCACTATCAAGTAATGGAACC 57.876 41.667 0.00 0.00 38.81 3.62
324 325 2.926200 CCAGACGACTTGCACTATCAAG 59.074 50.000 0.00 2.33 46.57 3.02
325 326 2.299013 ACCAGACGACTTGCACTATCAA 59.701 45.455 0.00 0.00 0.00 2.57
326 327 1.893137 ACCAGACGACTTGCACTATCA 59.107 47.619 0.00 0.00 0.00 2.15
327 328 2.656560 ACCAGACGACTTGCACTATC 57.343 50.000 0.00 0.00 0.00 2.08
328 329 3.326747 GAAACCAGACGACTTGCACTAT 58.673 45.455 0.00 0.00 0.00 2.12
329 330 2.750948 GAAACCAGACGACTTGCACTA 58.249 47.619 0.00 0.00 0.00 2.74
330 331 1.583054 GAAACCAGACGACTTGCACT 58.417 50.000 0.00 0.00 0.00 4.40
331 332 0.232303 CGAAACCAGACGACTTGCAC 59.768 55.000 0.00 0.00 0.00 4.57
332 333 0.103390 TCGAAACCAGACGACTTGCA 59.897 50.000 0.00 0.00 33.62 4.08
333 334 1.126846 CATCGAAACCAGACGACTTGC 59.873 52.381 0.00 0.00 41.17 4.01
334 335 2.404215 ACATCGAAACCAGACGACTTG 58.596 47.619 0.00 0.00 41.17 3.16
335 336 2.800544 CAACATCGAAACCAGACGACTT 59.199 45.455 0.00 0.00 41.17 3.01
336 337 2.035449 TCAACATCGAAACCAGACGACT 59.965 45.455 0.00 0.00 41.17 4.18
337 338 2.400399 TCAACATCGAAACCAGACGAC 58.600 47.619 0.00 0.00 41.17 4.34
338 339 2.295070 TCTCAACATCGAAACCAGACGA 59.705 45.455 0.00 0.00 42.49 4.20
339 340 2.672714 TCTCAACATCGAAACCAGACG 58.327 47.619 0.00 0.00 0.00 4.18
340 341 4.773510 GTTTCTCAACATCGAAACCAGAC 58.226 43.478 0.00 0.00 41.77 3.51
345 346 6.438763 AGATTTGGTTTCTCAACATCGAAAC 58.561 36.000 6.39 6.39 45.00 2.78
346 347 6.633500 AGATTTGGTTTCTCAACATCGAAA 57.367 33.333 0.00 0.00 34.15 3.46
347 348 7.737972 TTAGATTTGGTTTCTCAACATCGAA 57.262 32.000 0.00 0.00 34.15 3.71
348 349 7.444183 AGTTTAGATTTGGTTTCTCAACATCGA 59.556 33.333 0.00 0.00 32.32 3.59
349 350 7.584987 AGTTTAGATTTGGTTTCTCAACATCG 58.415 34.615 0.00 0.00 32.32 3.84
350 351 8.023706 GGAGTTTAGATTTGGTTTCTCAACATC 58.976 37.037 0.00 0.00 32.32 3.06
351 352 7.505585 TGGAGTTTAGATTTGGTTTCTCAACAT 59.494 33.333 0.00 0.00 32.32 2.71
352 353 6.831353 TGGAGTTTAGATTTGGTTTCTCAACA 59.169 34.615 0.00 0.00 32.32 3.33
353 354 7.272037 TGGAGTTTAGATTTGGTTTCTCAAC 57.728 36.000 0.00 0.00 30.79 3.18
354 355 8.477419 AATGGAGTTTAGATTTGGTTTCTCAA 57.523 30.769 0.00 0.00 0.00 3.02
355 356 9.581289 TTAATGGAGTTTAGATTTGGTTTCTCA 57.419 29.630 0.00 0.00 0.00 3.27
361 362 9.981114 CAACTTTTAATGGAGTTTAGATTTGGT 57.019 29.630 0.00 0.00 34.04 3.67
409 410 9.771534 CCCCATTTGTCTGTCTTATTTTAAAAA 57.228 29.630 4.44 0.00 0.00 1.94
410 411 9.148879 TCCCCATTTGTCTGTCTTATTTTAAAA 57.851 29.630 2.51 2.51 0.00 1.52
411 412 8.713708 TCCCCATTTGTCTGTCTTATTTTAAA 57.286 30.769 0.00 0.00 0.00 1.52
412 413 8.167392 TCTCCCCATTTGTCTGTCTTATTTTAA 58.833 33.333 0.00 0.00 0.00 1.52
413 414 7.695055 TCTCCCCATTTGTCTGTCTTATTTTA 58.305 34.615 0.00 0.00 0.00 1.52
414 415 6.552008 TCTCCCCATTTGTCTGTCTTATTTT 58.448 36.000 0.00 0.00 0.00 1.82
415 416 6.139679 TCTCCCCATTTGTCTGTCTTATTT 57.860 37.500 0.00 0.00 0.00 1.40
416 417 5.339530 CCTCTCCCCATTTGTCTGTCTTATT 60.340 44.000 0.00 0.00 0.00 1.40
417 418 4.164988 CCTCTCCCCATTTGTCTGTCTTAT 59.835 45.833 0.00 0.00 0.00 1.73
418 419 3.519510 CCTCTCCCCATTTGTCTGTCTTA 59.480 47.826 0.00 0.00 0.00 2.10
419 420 2.307098 CCTCTCCCCATTTGTCTGTCTT 59.693 50.000 0.00 0.00 0.00 3.01
420 421 1.912043 CCTCTCCCCATTTGTCTGTCT 59.088 52.381 0.00 0.00 0.00 3.41
421 422 1.065126 CCCTCTCCCCATTTGTCTGTC 60.065 57.143 0.00 0.00 0.00 3.51
422 423 0.995024 CCCTCTCCCCATTTGTCTGT 59.005 55.000 0.00 0.00 0.00 3.41
423 424 0.257039 CCCCTCTCCCCATTTGTCTG 59.743 60.000 0.00 0.00 0.00 3.51
424 425 0.121197 TCCCCTCTCCCCATTTGTCT 59.879 55.000 0.00 0.00 0.00 3.41
425 426 0.999712 TTCCCCTCTCCCCATTTGTC 59.000 55.000 0.00 0.00 0.00 3.18
426 427 1.466858 TTTCCCCTCTCCCCATTTGT 58.533 50.000 0.00 0.00 0.00 2.83
427 428 2.391678 CATTTCCCCTCTCCCCATTTG 58.608 52.381 0.00 0.00 0.00 2.32
428 429 1.291939 CCATTTCCCCTCTCCCCATTT 59.708 52.381 0.00 0.00 0.00 2.32
429 430 0.936691 CCATTTCCCCTCTCCCCATT 59.063 55.000 0.00 0.00 0.00 3.16
430 431 1.001140 CCCATTTCCCCTCTCCCCAT 61.001 60.000 0.00 0.00 0.00 4.00
431 432 1.622442 CCCATTTCCCCTCTCCCCA 60.622 63.158 0.00 0.00 0.00 4.96
432 433 2.395353 CCCCATTTCCCCTCTCCCC 61.395 68.421 0.00 0.00 0.00 4.81
433 434 2.395353 CCCCCATTTCCCCTCTCCC 61.395 68.421 0.00 0.00 0.00 4.30
434 435 3.074907 GCCCCCATTTCCCCTCTCC 62.075 68.421 0.00 0.00 0.00 3.71
435 436 2.290021 CTGCCCCCATTTCCCCTCTC 62.290 65.000 0.00 0.00 0.00 3.20
436 437 2.204448 TGCCCCCATTTCCCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
437 438 2.280079 CTGCCCCCATTTCCCCTC 59.720 66.667 0.00 0.00 0.00 4.30
440 441 0.544120 TTTGTCTGCCCCCATTTCCC 60.544 55.000 0.00 0.00 0.00 3.97
450 451 1.272147 ACCCCTCTTCATTTGTCTGCC 60.272 52.381 0.00 0.00 0.00 4.85
468 469 5.293569 CCTACAATGACGACCTCATTTTACC 59.706 44.000 0.00 0.00 45.89 2.85
469 470 5.293569 CCCTACAATGACGACCTCATTTTAC 59.706 44.000 0.00 0.00 45.89 2.01
470 471 5.188163 TCCCTACAATGACGACCTCATTTTA 59.812 40.000 0.00 0.00 45.89 1.52
471 472 4.019681 TCCCTACAATGACGACCTCATTTT 60.020 41.667 0.00 0.00 45.89 1.82
480 481 6.317642 CCATTTATTTGTCCCTACAATGACGA 59.682 38.462 0.00 0.00 44.85 4.20
483 484 5.896678 CCCCATTTATTTGTCCCTACAATGA 59.103 40.000 0.00 0.00 44.85 2.57
485 486 4.653801 GCCCCATTTATTTGTCCCTACAAT 59.346 41.667 0.00 0.00 44.85 2.71
492 493 2.650322 TCGAGCCCCATTTATTTGTCC 58.350 47.619 0.00 0.00 0.00 4.02
497 498 2.158813 ACACGATCGAGCCCCATTTATT 60.159 45.455 24.34 0.00 0.00 1.40
522 530 4.276926 GCCTAATTTTAGAGCCTCCATGTG 59.723 45.833 0.00 0.00 32.47 3.21
529 537 5.268118 GCAAATGCCTAATTTTAGAGCCT 57.732 39.130 0.00 0.00 36.28 4.58
659 669 3.911260 TGGGAATAAATGTAGCCGGGATA 59.089 43.478 2.18 0.00 0.00 2.59
660 670 2.714250 TGGGAATAAATGTAGCCGGGAT 59.286 45.455 2.18 0.00 0.00 3.85
661 671 2.128535 TGGGAATAAATGTAGCCGGGA 58.871 47.619 2.18 0.00 0.00 5.14
669 679 2.091541 CGGCACAGTGGGAATAAATGT 58.908 47.619 0.00 0.00 0.00 2.71
670 680 2.091541 ACGGCACAGTGGGAATAAATG 58.908 47.619 0.00 0.00 0.00 2.32
739 1272 2.955660 GGGATGGAAATGGTTTATGCGA 59.044 45.455 0.00 0.00 0.00 5.10
759 1292 3.443329 TGAATTCGTGGTGATGAAATGGG 59.557 43.478 0.04 0.00 30.75 4.00
906 1456 1.477685 TTTCCTCTCGCCGGAAAGGT 61.478 55.000 5.05 0.00 43.57 3.50
945 1498 2.603473 TGGGTGGTCTGGTCTCGG 60.603 66.667 0.00 0.00 0.00 4.63
1173 1727 0.252558 GGAGGTTGGGGTAGGAGTCA 60.253 60.000 0.00 0.00 0.00 3.41
1398 1960 1.164041 AGAAAAACTCCACCGCGGTG 61.164 55.000 44.04 44.04 45.02 4.94
1411 1988 3.548014 GCAACAGCGCAGTTCTAGAAAAA 60.548 43.478 15.89 0.00 0.00 1.94
1528 2132 7.376866 CCTAAATTATCAAATGCTGCGTAACTG 59.623 37.037 0.00 0.00 0.00 3.16
1529 2133 7.417612 CCTAAATTATCAAATGCTGCGTAACT 58.582 34.615 0.00 0.00 0.00 2.24
1530 2134 6.142320 GCCTAAATTATCAAATGCTGCGTAAC 59.858 38.462 0.00 0.00 0.00 2.50
1595 2199 2.076100 GATCTCACGCACAACCAATCA 58.924 47.619 0.00 0.00 0.00 2.57
1798 2666 1.605712 GGATCCGCCTATCCAAACTCG 60.606 57.143 0.00 0.00 44.26 4.18
1810 2678 4.256180 ATTCAGCCCGGATCCGCC 62.256 66.667 29.12 20.31 38.24 6.13
1811 2679 2.974698 CATTCAGCCCGGATCCGC 60.975 66.667 29.12 16.10 38.24 5.54
1812 2680 2.281070 CCATTCAGCCCGGATCCG 60.281 66.667 27.65 27.65 39.44 4.18
1813 2681 1.526917 CACCATTCAGCCCGGATCC 60.527 63.158 0.73 0.00 0.00 3.36
1847 2715 7.228590 CAGGGGAAAGGGTAATCGAATATTTA 58.771 38.462 0.00 0.00 0.00 1.40
1991 3068 5.815740 GGAAACCGTCAGCTTAATTCTCATA 59.184 40.000 0.00 0.00 0.00 2.15
2370 3502 1.447643 GCATCATACCCTCTGGCGT 59.552 57.895 0.00 0.00 33.59 5.68
2835 4182 4.126437 TCATGACACAATGAAGTTCGTGT 58.874 39.130 12.95 12.95 44.91 4.49
2838 4185 4.687948 AGACTCATGACACAATGAAGTTCG 59.312 41.667 0.00 0.00 36.16 3.95
2984 4528 7.106439 TGCTTTTGAAGTTAAAGAACCATCA 57.894 32.000 2.86 0.00 36.08 3.07
2985 4529 7.116805 CCATGCTTTTGAAGTTAAAGAACCATC 59.883 37.037 2.86 0.00 36.08 3.51
3224 4768 3.922240 GGAAGATCGTACAAACAACGCTA 59.078 43.478 0.00 0.00 40.12 4.26
3235 4779 9.922305 CAATTTCTGAAATAAGGAAGATCGTAC 57.078 33.333 15.45 0.00 0.00 3.67
3948 5589 1.478105 GGCCTGCTTTTCTACCATTGG 59.522 52.381 0.00 0.00 0.00 3.16
3991 5632 2.432146 AGTTAATCGGAGCAGATCAGCA 59.568 45.455 13.03 0.00 36.85 4.41
4522 6382 7.255139 GCTACAGGTATACTTTTGGCAATAAGG 60.255 40.741 19.22 3.97 0.00 2.69
4549 6409 3.236896 TCCAGATGCATCTAGCTGATCA 58.763 45.455 28.27 1.86 45.94 2.92
4855 6971 2.420022 ACGCCTGTTTTGATATCAGCAC 59.580 45.455 5.39 7.37 0.00 4.40
4908 7024 7.762615 TCCTACAAGGAAATGACAAAGTATACG 59.237 37.037 0.00 0.00 42.51 3.06
4983 7099 6.371809 TGTAGAGACGCAAACAAAAGATTT 57.628 33.333 0.00 0.00 0.00 2.17
5054 7170 7.591421 TGGATCTGTCAGTAATAATAACCGA 57.409 36.000 0.00 0.00 0.00 4.69
5302 7418 3.132824 CCTGAAGCAAATACCCCCATTTC 59.867 47.826 0.00 0.00 0.00 2.17
5396 7512 1.184431 AATCACCATTTGCCGCATCA 58.816 45.000 0.00 0.00 0.00 3.07
5493 7610 1.742761 ATGACGATTGCAGGGTTCAG 58.257 50.000 0.00 0.00 0.00 3.02
5525 7642 8.241367 CCAAGTTATACTATTGTGTTTTGGACC 58.759 37.037 8.01 0.00 34.70 4.46
5539 7656 3.429822 GGCACTGCGACCAAGTTATACTA 60.430 47.826 0.00 0.00 0.00 1.82
5593 7710 4.612712 CGACATTTGCGTTTTGACTGGTAT 60.613 41.667 0.00 0.00 0.00 2.73
5594 7711 3.303461 CGACATTTGCGTTTTGACTGGTA 60.303 43.478 0.00 0.00 0.00 3.25
5625 7743 2.545742 GCGTGGAAGGAAAGTTGCAAAT 60.546 45.455 0.00 0.00 28.58 2.32
5713 8315 2.224475 CCGAGTCCCCGACTATCTTAGA 60.224 54.545 0.00 0.00 43.53 2.10
5746 8348 3.146066 CCAAACTTTCCATTCGTCTCCA 58.854 45.455 0.00 0.00 0.00 3.86
5747 8349 2.488153 CCCAAACTTTCCATTCGTCTCC 59.512 50.000 0.00 0.00 0.00 3.71
5752 8354 2.514803 ACTCCCCAAACTTTCCATTCG 58.485 47.619 0.00 0.00 0.00 3.34
5759 8361 3.976015 TGTTGAGAACTCCCCAAACTTT 58.024 40.909 0.00 0.00 0.00 2.66
5768 8370 4.646572 AGGTCAAGAATGTTGAGAACTCC 58.353 43.478 0.00 0.00 0.00 3.85
5786 8542 7.547370 GGTAATATTCAGTATGCATCAGAGGTC 59.453 40.741 0.19 0.00 34.76 3.85
6006 8762 2.563050 TTCGTATGCTCGCTGCTGCT 62.563 55.000 14.03 0.00 43.37 4.24
6086 8842 7.062956 CCATTGAAAATAGCCCGAAGTTTAAAC 59.937 37.037 10.47 10.47 0.00 2.01
6100 8857 6.700960 TGCACAACAAGAACCATTGAAAATAG 59.299 34.615 0.00 0.00 34.20 1.73
6101 8858 6.478344 GTGCACAACAAGAACCATTGAAAATA 59.522 34.615 13.17 0.00 34.20 1.40
6108 8865 2.760092 ACTGTGCACAACAAGAACCATT 59.240 40.909 21.98 0.00 38.67 3.16
6188 8945 1.602851 CTACATCAGCAGCATTCAGGC 59.397 52.381 0.00 0.00 0.00 4.85
6190 8947 3.556365 CACTCTACATCAGCAGCATTCAG 59.444 47.826 0.00 0.00 0.00 3.02
6233 8990 7.148983 CGACACATGTTTTGATGAAAATACCAC 60.149 37.037 0.00 0.00 33.63 4.16
6364 9125 1.464997 GACACGAAGAGCATTTCACCC 59.535 52.381 0.00 0.00 0.00 4.61
6406 9168 3.575256 TCGTTGCTTCTTGGGAACTAGTA 59.425 43.478 0.00 0.00 35.80 1.82
6408 9170 3.040147 TCGTTGCTTCTTGGGAACTAG 57.960 47.619 0.00 0.00 35.80 2.57
6447 9210 2.158798 CCATCACAGGTCAGAGATGCAT 60.159 50.000 0.00 0.00 35.93 3.96
6518 9281 3.255642 AGAACCCATTGAAATGTTGACGG 59.744 43.478 2.55 0.00 34.60 4.79
6573 9492 3.058914 GTGTCAAACAGGAGAAACCATCG 60.059 47.826 0.00 0.00 42.04 3.84
6600 9519 0.162294 GCTTCTTGCATGCAAAACGC 59.838 50.000 31.37 24.66 42.31 4.84
6747 9667 2.202388 GTCGCAATCGTCGTCGGA 60.202 61.111 1.55 0.00 37.69 4.55
6784 9710 3.437795 TCTCTCGTTCCGGCGTCC 61.438 66.667 6.01 0.00 0.00 4.79
7072 9998 4.742201 GGAACGCGAGCAGCCTCA 62.742 66.667 15.93 0.00 44.76 3.86
7307 10233 4.069304 TGGGAGACTAACCAATGAAAACG 58.931 43.478 0.00 0.00 32.89 3.60
7321 10247 6.332901 AGCCCTTATATTTACAATGGGAGACT 59.667 38.462 0.00 0.00 35.40 3.24
7358 10284 7.507304 CATGAGAAAGAATGAACAAACAATGC 58.493 34.615 0.00 0.00 0.00 3.56
7359 10285 7.170151 TGCATGAGAAAGAATGAACAAACAATG 59.830 33.333 0.00 0.00 0.00 2.82
7401 10330 7.194607 ACCATCATATATTGTCTTTTCGCAG 57.805 36.000 0.00 0.00 0.00 5.18
7414 10343 9.920946 AAGTTGTAAGACCAAACCATCATATAT 57.079 29.630 0.00 0.00 0.00 0.86
7415 10344 9.173021 CAAGTTGTAAGACCAAACCATCATATA 57.827 33.333 0.00 0.00 0.00 0.86
7432 10361 4.038642 GGAGGGTCATTTTGCAAGTTGTAA 59.961 41.667 1.88 1.88 0.00 2.41
7586 10522 1.400142 CAGGTGTTTTCGTGACTGCAA 59.600 47.619 0.00 0.00 0.00 4.08
7653 10607 1.211969 GGCGAGACGACAAGTGCTA 59.788 57.895 0.00 0.00 33.63 3.49
7658 10612 3.358076 GAGGGGGCGAGACGACAAG 62.358 68.421 0.00 0.00 36.10 3.16
7659 10613 3.379445 GAGGGGGCGAGACGACAA 61.379 66.667 0.00 0.00 36.10 3.18
7670 10624 3.274550 AACAGAGAGGGGGAGGGGG 62.275 68.421 0.00 0.00 0.00 5.40
7671 10625 1.690985 GAACAGAGAGGGGGAGGGG 60.691 68.421 0.00 0.00 0.00 4.79
7672 10626 0.252927 AAGAACAGAGAGGGGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
7673 10627 0.908198 CAAGAACAGAGAGGGGGAGG 59.092 60.000 0.00 0.00 0.00 4.30
7674 10628 0.251634 GCAAGAACAGAGAGGGGGAG 59.748 60.000 0.00 0.00 0.00 4.30
7675 10629 0.178891 AGCAAGAACAGAGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
7676 10630 0.251634 GAGCAAGAACAGAGAGGGGG 59.748 60.000 0.00 0.00 0.00 5.40
7677 10631 1.206849 GAGAGCAAGAACAGAGAGGGG 59.793 57.143 0.00 0.00 0.00 4.79
7718 10716 3.394674 TGAAACCATGTCGACTTGCTA 57.605 42.857 22.42 0.30 0.00 3.49
7728 10748 4.012374 GTCATCACTCCATGAAACCATGT 58.988 43.478 0.00 0.00 41.93 3.21
7822 10855 3.629796 CCCCAATTGTTGCCTAACCCTAT 60.630 47.826 4.43 0.00 35.92 2.57
7836 10869 3.700538 TCTGGTCAGAAATCCCCAATTG 58.299 45.455 0.00 0.00 33.91 2.32
7900 10937 0.914644 TAGATCTGCAGCAAGGCCTT 59.085 50.000 13.78 13.78 0.00 4.35
7980 11017 3.441500 ACCCAAGAATCTTCTTCCACC 57.558 47.619 2.21 0.00 45.23 4.61
7995 11032 1.270907 ACCTTTTGTGCACAACCCAA 58.729 45.000 31.17 21.12 35.28 4.12
8124 11175 3.748083 ACAGCACTATGGCATAGAATGG 58.252 45.455 34.80 23.35 36.68 3.16
8126 11177 6.425210 TCTTACAGCACTATGGCATAGAAT 57.575 37.500 34.80 19.42 36.68 2.40
8179 11269 6.569179 AACACTACATATTTGGACAACACC 57.431 37.500 0.00 0.00 0.00 4.16
8219 11327 2.727123 TTTCACAGTGCCCTTTGAGA 57.273 45.000 0.00 0.00 29.53 3.27



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.