Multiple sequence alignment - TraesCS3D01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G277800 chr3D 100.000 5239 0 0 1 5239 384855872 384850634 0.000000e+00 9675.0
1 TraesCS3D01G277800 chr3B 89.809 2090 124 26 736 2762 501111423 501109360 0.000000e+00 2597.0
2 TraesCS3D01G277800 chr3B 88.144 1476 105 28 2846 4291 501109190 501107755 0.000000e+00 1692.0
3 TraesCS3D01G277800 chr3B 92.470 757 44 11 1 752 501112190 501111442 0.000000e+00 1070.0
4 TraesCS3D01G277800 chr3B 92.614 352 17 6 4357 4704 501107748 501107402 1.010000e-136 497.0
5 TraesCS3D01G277800 chr3B 84.775 289 27 7 4711 4994 501105048 501104772 1.860000e-69 274.0
6 TraesCS3D01G277800 chr3B 90.355 197 16 1 5043 5239 501104773 501104580 6.730000e-64 255.0
7 TraesCS3D01G277800 chr3B 93.056 72 5 0 2765 2836 501109305 501109234 7.180000e-19 106.0
8 TraesCS3D01G277800 chr3A 88.966 2012 139 32 802 2764 507303792 507301815 0.000000e+00 2409.0
9 TraesCS3D01G277800 chr3A 87.957 1478 110 29 2846 4291 507301639 507300198 0.000000e+00 1681.0
10 TraesCS3D01G277800 chr3A 91.401 721 51 9 15 728 507304820 507304104 0.000000e+00 977.0
11 TraesCS3D01G277800 chr3A 90.037 542 26 13 4357 4884 507300191 507299664 0.000000e+00 676.0
12 TraesCS3D01G277800 chr3A 86.462 325 25 6 4917 5239 507298879 507298572 6.500000e-89 339.0
13 TraesCS3D01G277800 chr7D 84.906 106 16 0 1115 1220 60692544 60692649 1.990000e-19 108.0
14 TraesCS3D01G277800 chr7D 88.235 68 4 2 4297 4360 185138060 185137993 1.560000e-10 78.7
15 TraesCS3D01G277800 chr7D 88.235 68 5 1 4294 4358 185137994 185138061 1.560000e-10 78.7
16 TraesCS3D01G277800 chr1B 92.424 66 4 1 4297 4361 342124884 342124819 5.590000e-15 93.5
17 TraesCS3D01G277800 chr7A 93.548 62 3 1 4297 4357 567475426 567475365 2.010000e-14 91.6
18 TraesCS3D01G277800 chrUn 91.045 67 3 2 4297 4360 105371892 105371826 2.600000e-13 87.9
19 TraesCS3D01G277800 chr5A 90.909 66 3 2 4296 4358 381757769 381757704 9.350000e-13 86.1
20 TraesCS3D01G277800 chr2B 91.935 62 4 1 4297 4357 199183223 199183162 9.350000e-13 86.1
21 TraesCS3D01G277800 chr1D 89.394 66 3 2 4297 4358 309094097 309094032 4.350000e-11 80.5
22 TraesCS3D01G277800 chr5D 89.231 65 3 2 4297 4361 61066477 61066417 1.560000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G277800 chr3D 384850634 384855872 5238 True 9675.000000 9675 100.000000 1 5239 1 chr3D.!!$R1 5238
1 TraesCS3D01G277800 chr3B 501104580 501112190 7610 True 927.285714 2597 90.174714 1 5239 7 chr3B.!!$R1 5238
2 TraesCS3D01G277800 chr3A 507298572 507304820 6248 True 1216.400000 2409 88.964600 15 5239 5 chr3A.!!$R1 5224

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1151 0.315568 CGATCCACGAATCTCCCCTC 59.684 60.0 0.0 0.00 45.77 4.30 F
2271 2584 0.032217 TTTTCCAGGCCCATGGGATC 60.032 55.0 36.0 24.03 41.01 3.36 F
2890 3315 0.036952 ACCCATCAGAGTCACAAGCG 60.037 55.0 0.0 0.00 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 2940 0.034767 CTTCATCCTGCTGCTGGGAA 60.035 55.0 23.07 17.74 35.08 3.97 R
3290 3752 0.038744 ATCCTTGGTCAACAGGGCAG 59.961 55.0 0.00 0.00 45.52 4.85 R
4405 4867 0.036164 TGCCGTGGCTGTAGAAACAT 59.964 50.0 12.84 0.00 42.51 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.679837 GCAATGTCATGATCCGTTCTGT 59.320 45.455 0.00 0.00 0.00 3.41
80 82 0.920763 ATGGCTCAGTTGATGGGGGA 60.921 55.000 0.00 0.00 0.00 4.81
85 87 3.416156 GCTCAGTTGATGGGGGATTATC 58.584 50.000 0.00 0.00 0.00 1.75
103 105 1.990799 TCTAGGTCAAATGCACGTCG 58.009 50.000 0.00 0.00 0.00 5.12
143 145 0.604073 TTGTTCCTCGCCGATGTGTA 59.396 50.000 0.00 0.00 0.00 2.90
220 222 4.416848 ACCTATGGCTGGTGAATTATCCTT 59.583 41.667 0.00 0.00 36.30 3.36
276 278 6.756542 ACCCGATTAAAATCATAAAAGCTTGC 59.243 34.615 0.00 0.00 35.11 4.01
300 304 7.483307 GCTATCAGCATTCAAACCAAGAATTA 58.517 34.615 0.00 0.00 41.89 1.40
341 345 5.192927 TGCTTACTATGTCCAATCCCTTTG 58.807 41.667 0.00 0.00 34.93 2.77
342 346 4.036852 GCTTACTATGTCCAATCCCTTTGC 59.963 45.833 0.00 0.00 33.73 3.68
395 402 4.638304 TCGTTTAATAGGCTAATGGCTCC 58.362 43.478 0.00 0.00 46.86 4.70
398 405 5.179555 CGTTTAATAGGCTAATGGCTCCTTC 59.820 44.000 0.00 0.00 46.86 3.46
400 407 2.190398 TAGGCTAATGGCTCCTTCCA 57.810 50.000 0.00 0.00 46.86 3.53
447 454 3.677121 CGCTCCAGACTACATTATGCATC 59.323 47.826 0.19 0.00 0.00 3.91
481 488 7.176515 TCCGTGGCAAATGAATTAGCATTATAT 59.823 33.333 0.00 0.00 37.50 0.86
610 619 1.404851 GGAAAGGAGGTCGCTCAGAAG 60.405 57.143 0.00 0.00 0.00 2.85
662 674 1.185618 TCGACTGTCAAGGGACCTGG 61.186 60.000 8.73 0.00 43.65 4.45
663 675 1.003233 GACTGTCAAGGGACCTGGC 60.003 63.158 2.24 0.00 43.65 4.85
696 708 1.269517 CCCACGTTTTGTCCACCAATG 60.270 52.381 0.00 0.00 31.81 2.82
705 717 2.737544 TGTCCACCAATGAATCCCATG 58.262 47.619 0.00 0.00 35.24 3.66
716 728 0.615544 AATCCCATGCCACCAACCAG 60.616 55.000 0.00 0.00 0.00 4.00
724 736 0.809636 GCCACCAACCAGCAAACAAC 60.810 55.000 0.00 0.00 0.00 3.32
735 747 1.065782 AGCAAACAACCCACCCAAAAC 60.066 47.619 0.00 0.00 0.00 2.43
791 837 1.984570 CCCCGCAGTCTTCTCCTGA 60.985 63.158 0.00 0.00 31.38 3.86
842 1097 2.997315 TCTCCTCTGGCCACCACG 60.997 66.667 0.00 0.00 0.00 4.94
850 1105 4.767255 GGCCACCACGAGGAGCAG 62.767 72.222 17.03 0.81 38.78 4.24
853 1108 2.279069 CCACCACGAGGAGCAGAGT 61.279 63.158 5.68 0.00 38.69 3.24
895 1150 2.431023 CGATCCACGAATCTCCCCT 58.569 57.895 0.00 0.00 45.77 4.79
896 1151 0.315568 CGATCCACGAATCTCCCCTC 59.684 60.000 0.00 0.00 45.77 4.30
897 1152 1.710816 GATCCACGAATCTCCCCTCT 58.289 55.000 0.00 0.00 0.00 3.69
898 1153 1.616374 GATCCACGAATCTCCCCTCTC 59.384 57.143 0.00 0.00 0.00 3.20
899 1154 0.335019 TCCACGAATCTCCCCTCTCA 59.665 55.000 0.00 0.00 0.00 3.27
900 1155 1.195115 CCACGAATCTCCCCTCTCAA 58.805 55.000 0.00 0.00 0.00 3.02
901 1156 1.555075 CCACGAATCTCCCCTCTCAAA 59.445 52.381 0.00 0.00 0.00 2.69
902 1157 2.171448 CCACGAATCTCCCCTCTCAAAT 59.829 50.000 0.00 0.00 0.00 2.32
903 1158 3.462021 CACGAATCTCCCCTCTCAAATC 58.538 50.000 0.00 0.00 0.00 2.17
904 1159 2.436173 ACGAATCTCCCCTCTCAAATCC 59.564 50.000 0.00 0.00 0.00 3.01
905 1160 2.224402 CGAATCTCCCCTCTCAAATCCC 60.224 54.545 0.00 0.00 0.00 3.85
906 1161 1.826447 ATCTCCCCTCTCAAATCCCC 58.174 55.000 0.00 0.00 0.00 4.81
907 1162 0.327576 TCTCCCCTCTCAAATCCCCC 60.328 60.000 0.00 0.00 0.00 5.40
926 1181 2.579201 CGGATCTGCTGGTTCCGT 59.421 61.111 20.12 0.00 46.45 4.69
927 1182 1.811266 CGGATCTGCTGGTTCCGTG 60.811 63.158 20.12 2.60 46.45 4.94
978 1260 2.646175 CGAGCTGTTTCGGGAGGGA 61.646 63.158 0.00 0.00 36.95 4.20
982 1273 1.299976 CTGTTTCGGGAGGGAAGGG 59.700 63.158 0.00 0.00 0.00 3.95
983 1274 2.198304 CTGTTTCGGGAGGGAAGGGG 62.198 65.000 0.00 0.00 0.00 4.79
984 1275 1.921857 GTTTCGGGAGGGAAGGGGA 60.922 63.158 0.00 0.00 0.00 4.81
985 1276 1.615424 TTTCGGGAGGGAAGGGGAG 60.615 63.158 0.00 0.00 0.00 4.30
986 1277 3.635869 TTCGGGAGGGAAGGGGAGG 62.636 68.421 0.00 0.00 0.00 4.30
988 1279 4.845307 GGGAGGGAAGGGGAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
989 1280 3.707189 GGAGGGAAGGGGAGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
990 1281 2.040359 GAGGGAAGGGGAGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
1164 1461 0.975544 CGACGCTTCTCTACAACGTG 59.024 55.000 0.00 0.00 37.05 4.49
1185 1482 2.485122 CGCAACCAATTCGAGGCC 59.515 61.111 0.00 0.00 0.00 5.19
1233 1530 1.133809 AGGTGCTGACCCTGCCTTTA 61.134 55.000 0.00 0.00 44.40 1.85
1237 1534 0.609131 GCTGACCCTGCCTTTAAGCA 60.609 55.000 0.00 0.00 41.46 3.91
1241 1538 2.825532 TGACCCTGCCTTTAAGCAAATC 59.174 45.455 0.00 0.00 43.52 2.17
1257 1554 6.560253 AGCAAATCTCGTGATTACTTTGTT 57.440 33.333 12.73 4.39 41.62 2.83
1259 1556 7.078228 AGCAAATCTCGTGATTACTTTGTTTC 58.922 34.615 12.73 0.00 41.62 2.78
1334 1634 3.442273 TCGATAAATTGGTTCACTTGGCC 59.558 43.478 0.00 0.00 0.00 5.36
1349 1649 3.217626 CTTGGCCTCCATAAGATTGGAC 58.782 50.000 3.32 0.00 40.90 4.02
1362 1662 0.674534 ATTGGACGATAGGGCGACTC 59.325 55.000 0.00 0.00 43.77 3.36
1419 1720 5.427378 CACCAGTTTTTCATCAGGGTTTTT 58.573 37.500 0.00 0.00 0.00 1.94
1442 1743 0.107165 GTTCCATCTACACTGGGGGC 60.107 60.000 0.00 0.00 34.36 5.80
1444 1745 1.694169 CCATCTACACTGGGGGCCT 60.694 63.158 0.84 0.00 0.00 5.19
1445 1746 1.700042 CCATCTACACTGGGGGCCTC 61.700 65.000 0.84 0.00 0.00 4.70
1500 1803 3.856309 ACGCAGTGACTCTCCACA 58.144 55.556 0.00 0.00 42.51 4.17
1512 1815 5.234543 GTGACTCTCCACAGTTAGTTTTGTC 59.765 44.000 0.00 0.00 37.04 3.18
1566 1869 5.161358 TGTGCGTGAGAGTATTTCTTGTAG 58.839 41.667 0.00 0.00 35.87 2.74
1597 1900 0.971386 CTGTTGGAAAAGGCATGGCT 59.029 50.000 17.44 17.44 0.00 4.75
1607 1910 2.177531 GCATGGCTGTTGTGAGCG 59.822 61.111 0.00 0.00 40.13 5.03
1648 1951 3.118992 GGTCATTTCAGGCTCCATTTTCC 60.119 47.826 0.00 0.00 0.00 3.13
1828 2131 4.711846 ACGCATTCATCCCTAGATAGCATA 59.288 41.667 0.00 0.00 0.00 3.14
1834 2137 5.655394 TCATCCCTAGATAGCATACCTTGT 58.345 41.667 0.00 0.00 0.00 3.16
1885 2189 4.434593 GCTTTGCACAATTTAGCATTTCGG 60.435 41.667 2.68 0.00 40.94 4.30
1893 2197 7.165812 GCACAATTTAGCATTTCGGTGTATAAG 59.834 37.037 0.00 0.00 0.00 1.73
1911 2215 1.968704 AGACTGTGACGTGTCTCTGA 58.031 50.000 13.50 0.00 39.04 3.27
1927 2231 9.468532 CGTGTCTCTGATATAAAGATTTCATCA 57.531 33.333 3.75 3.75 0.00 3.07
2110 2415 6.932901 ACATTACTTGATTTCATTGTTGCG 57.067 33.333 0.00 0.00 0.00 4.85
2131 2436 5.623264 TGCGTGATTTCGTTTGTATTTTGAG 59.377 36.000 0.00 0.00 0.00 3.02
2135 2440 8.528295 CGTGATTTCGTTTGTATTTTGAGTTTT 58.472 29.630 0.00 0.00 0.00 2.43
2180 2485 3.119137 CCATAGTGTGGTCGATTCACAGA 60.119 47.826 20.03 13.62 44.52 3.41
2186 2491 1.009829 GGTCGATTCACAGACATGCC 58.990 55.000 0.00 0.00 39.01 4.40
2193 2506 0.253894 TCACAGACATGCCCCATCAG 59.746 55.000 0.00 0.00 0.00 2.90
2203 2516 0.462759 GCCCCATCAGTCTACTGTGC 60.463 60.000 9.81 3.61 44.12 4.57
2204 2517 1.198713 CCCCATCAGTCTACTGTGCT 58.801 55.000 9.81 0.00 44.12 4.40
2208 2521 3.686726 CCCATCAGTCTACTGTGCTTTTC 59.313 47.826 9.81 0.00 44.12 2.29
2209 2522 4.564406 CCCATCAGTCTACTGTGCTTTTCT 60.564 45.833 9.81 0.00 44.12 2.52
2211 2524 6.166279 CCATCAGTCTACTGTGCTTTTCTAA 58.834 40.000 9.81 0.00 44.12 2.10
2217 2530 6.531948 AGTCTACTGTGCTTTTCTAATTAGCG 59.468 38.462 7.67 0.00 37.73 4.26
2263 2576 0.969149 CACCTTCTTTTTCCAGGCCC 59.031 55.000 0.00 0.00 0.00 5.80
2271 2584 0.032217 TTTTCCAGGCCCATGGGATC 60.032 55.000 36.00 24.03 41.01 3.36
2307 2620 2.438021 TGCCACAAGAGACTACCTGTTT 59.562 45.455 0.00 0.00 0.00 2.83
2319 2632 0.251341 ACCTGTTTGCACCATCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
2340 2653 4.299155 TCGAAGATATTTGTCGAGCCATC 58.701 43.478 0.00 0.00 38.78 3.51
2359 2672 4.084013 CCATCGATTTTATCCACCGTAAGC 60.084 45.833 0.00 0.00 0.00 3.09
2369 2682 1.382522 CACCGTAAGCTCATGCCATT 58.617 50.000 0.00 0.00 40.80 3.16
2372 2685 2.292267 CCGTAAGCTCATGCCATTTCT 58.708 47.619 0.00 0.00 40.80 2.52
2377 2690 5.468072 CGTAAGCTCATGCCATTTCTTAGAT 59.532 40.000 0.00 0.00 40.80 1.98
2431 2760 2.902608 TCTCCTGGTGTTATGGAGTGT 58.097 47.619 7.94 0.00 45.46 3.55
2481 2810 3.036091 AGATTTGGGATGCAAGGAATGG 58.964 45.455 0.00 0.00 0.00 3.16
2483 2812 2.619697 TTGGGATGCAAGGAATGGAA 57.380 45.000 0.00 0.00 30.96 3.53
2507 2836 2.074547 TAGCTTGCGGTCAACTGTAC 57.925 50.000 0.00 0.00 0.00 2.90
2513 2844 1.145803 GCGGTCAACTGTACTGAACC 58.854 55.000 6.77 9.49 0.00 3.62
2514 2845 1.539496 GCGGTCAACTGTACTGAACCA 60.539 52.381 6.77 0.00 0.00 3.67
2532 2863 7.041372 ACTGAACCAAGTATTGTGTACATTGTC 60.041 37.037 0.00 0.00 46.99 3.18
2609 2940 5.422012 CACTATCTTTTAATGCAAACCCCCT 59.578 40.000 0.00 0.00 0.00 4.79
2615 2946 0.545071 AATGCAAACCCCCTTCCCAG 60.545 55.000 0.00 0.00 0.00 4.45
2621 2952 4.437587 CCCCCTTCCCAGCAGCAG 62.438 72.222 0.00 0.00 0.00 4.24
2630 2961 1.453379 CCAGCAGCAGGATGAAGGG 60.453 63.158 0.00 0.00 39.69 3.95
2648 2979 1.208642 GGTTTGTTTGCTGTCGCTGC 61.209 55.000 0.00 0.00 36.97 5.25
2684 3015 1.985159 TGACAGTAAGTGGAATGGGCT 59.015 47.619 0.00 0.00 0.00 5.19
2731 3062 5.721232 ACTGAGACCCTGTTATAAAAGTCG 58.279 41.667 1.96 0.00 0.00 4.18
2733 3064 3.869832 GAGACCCTGTTATAAAAGTCGGC 59.130 47.826 1.96 0.00 0.00 5.54
2780 3171 5.163581 ACACTACGTTCTCAACACTACACTT 60.164 40.000 0.00 0.00 0.00 3.16
2783 3174 6.914757 ACTACGTTCTCAACACTACACTTTAC 59.085 38.462 0.00 0.00 0.00 2.01
2785 3176 5.747197 ACGTTCTCAACACTACACTTTACTG 59.253 40.000 0.00 0.00 0.00 2.74
2788 3179 6.964807 TCTCAACACTACACTTTACTGGTA 57.035 37.500 0.00 0.00 0.00 3.25
2807 3198 8.147244 ACTGGTAAACTATCAAGGAACTACAT 57.853 34.615 0.00 0.00 38.49 2.29
2836 3227 8.057536 ACAAGTAATTTCACAAACCACACTTA 57.942 30.769 0.00 0.00 0.00 2.24
2838 3229 9.180678 CAAGTAATTTCACAAACCACACTTATC 57.819 33.333 0.00 0.00 0.00 1.75
2839 3230 8.458573 AGTAATTTCACAAACCACACTTATCA 57.541 30.769 0.00 0.00 0.00 2.15
2840 3231 8.567948 AGTAATTTCACAAACCACACTTATCAG 58.432 33.333 0.00 0.00 0.00 2.90
2841 3232 7.581213 AATTTCACAAACCACACTTATCAGA 57.419 32.000 0.00 0.00 0.00 3.27
2842 3233 6.618287 TTTCACAAACCACACTTATCAGAG 57.382 37.500 0.00 0.00 0.00 3.35
2843 3234 5.290493 TCACAAACCACACTTATCAGAGT 57.710 39.130 0.00 0.00 0.00 3.24
2844 3235 5.297547 TCACAAACCACACTTATCAGAGTC 58.702 41.667 0.00 0.00 0.00 3.36
2890 3315 0.036952 ACCCATCAGAGTCACAAGCG 60.037 55.000 0.00 0.00 0.00 4.68
2905 3330 2.806244 ACAAGCGTAAGTGTCCATGAAC 59.194 45.455 0.00 0.00 41.68 3.18
2906 3331 2.805671 CAAGCGTAAGTGTCCATGAACA 59.194 45.455 0.00 0.00 41.68 3.18
2907 3332 3.334583 AGCGTAAGTGTCCATGAACAT 57.665 42.857 0.00 0.00 41.68 2.71
2908 3333 3.002791 AGCGTAAGTGTCCATGAACATG 58.997 45.455 7.70 7.70 41.68 3.21
2909 3334 3.000041 GCGTAAGTGTCCATGAACATGA 59.000 45.455 15.21 0.70 39.62 3.07
2910 3335 3.435327 GCGTAAGTGTCCATGAACATGAA 59.565 43.478 15.21 0.00 39.62 2.57
2943 3368 7.170277 CACCTATCCCAATTCATGATGATGTA 58.830 38.462 0.00 0.00 0.00 2.29
2949 3382 5.048921 CCCAATTCATGATGATGTAGCTGAC 60.049 44.000 0.00 0.00 0.00 3.51
2955 3388 1.137086 GATGATGTAGCTGACGGGTGT 59.863 52.381 0.00 0.00 0.00 4.16
3001 3434 4.708726 ATTCCAAAGAATCGCTTTCTGG 57.291 40.909 1.82 0.00 44.83 3.86
3039 3472 9.190317 GAAATGGGGTGATTCTTTAGACTATTT 57.810 33.333 0.00 0.00 0.00 1.40
3040 3473 8.753497 AATGGGGTGATTCTTTAGACTATTTC 57.247 34.615 0.00 0.00 0.00 2.17
3128 3565 1.364901 TTTTTCCTGCTGCTGCTGC 59.635 52.632 22.51 22.51 40.48 5.25
3129 3566 1.111116 TTTTTCCTGCTGCTGCTGCT 61.111 50.000 27.67 0.00 40.48 4.24
3151 3600 5.007724 GCTGTTGTTGTTACTAGAGCTTGTT 59.992 40.000 0.00 0.00 41.12 2.83
3155 3604 4.750098 TGTTGTTACTAGAGCTTGTTCTGC 59.250 41.667 0.00 0.00 0.00 4.26
3156 3605 4.873746 TGTTACTAGAGCTTGTTCTGCT 57.126 40.909 0.00 0.00 44.24 4.24
3159 3608 5.696724 TGTTACTAGAGCTTGTTCTGCTTTC 59.303 40.000 0.00 0.00 41.30 2.62
3184 3639 6.381801 CAGTTCTCTTGTTTTAATGCCGAAT 58.618 36.000 0.00 0.00 0.00 3.34
3186 3641 7.061094 CAGTTCTCTTGTTTTAATGCCGAATTC 59.939 37.037 0.00 0.00 0.00 2.17
3233 3688 3.305629 TGAACGTTTTCAAACAGCAATGC 59.694 39.130 0.46 0.00 38.87 3.56
3240 3695 4.707030 TTCAAACAGCAATGCCTATCTG 57.293 40.909 0.00 0.00 0.00 2.90
3246 3701 4.275810 ACAGCAATGCCTATCTGAATTGT 58.724 39.130 0.00 0.00 33.50 2.71
3293 3755 2.638744 AAGCTTCCTTGACAGCTGC 58.361 52.632 15.27 7.45 46.01 5.25
3294 3756 0.892814 AAGCTTCCTTGACAGCTGCC 60.893 55.000 15.27 2.30 46.01 4.85
3321 3783 1.216064 CCAAGGATGGTCTGATCCCA 58.784 55.000 0.00 0.00 42.81 4.37
3322 3784 1.565759 CCAAGGATGGTCTGATCCCAA 59.434 52.381 0.00 0.00 42.81 4.12
3323 3785 2.176364 CCAAGGATGGTCTGATCCCAAT 59.824 50.000 0.00 0.00 42.81 3.16
3324 3786 3.373438 CCAAGGATGGTCTGATCCCAATT 60.373 47.826 0.00 0.00 42.81 2.32
3325 3787 4.284178 CAAGGATGGTCTGATCCCAATTT 58.716 43.478 0.00 0.00 42.81 1.82
3326 3788 5.448654 CAAGGATGGTCTGATCCCAATTTA 58.551 41.667 0.00 0.00 42.81 1.40
3327 3789 5.053978 AGGATGGTCTGATCCCAATTTAC 57.946 43.478 0.00 0.00 42.81 2.01
3328 3790 4.728860 AGGATGGTCTGATCCCAATTTACT 59.271 41.667 0.00 0.00 42.81 2.24
3329 3791 5.911178 AGGATGGTCTGATCCCAATTTACTA 59.089 40.000 0.00 0.00 42.81 1.82
3330 3792 6.389869 AGGATGGTCTGATCCCAATTTACTAA 59.610 38.462 0.00 0.00 42.81 2.24
3331 3793 7.074237 AGGATGGTCTGATCCCAATTTACTAAT 59.926 37.037 0.00 0.00 42.81 1.73
3332 3794 7.725844 GGATGGTCTGATCCCAATTTACTAATT 59.274 37.037 0.00 0.00 36.61 1.40
3333 3795 9.136323 GATGGTCTGATCCCAATTTACTAATTT 57.864 33.333 0.00 0.00 35.14 1.82
3335 3797 9.627123 TGGTCTGATCCCAATTTACTAATTTAG 57.373 33.333 1.79 1.79 31.63 1.85
3336 3798 9.628500 GGTCTGATCCCAATTTACTAATTTAGT 57.372 33.333 13.36 13.36 42.68 2.24
3351 3813 5.705609 AATTTAGTACACTTGTGCCTTGG 57.294 39.130 0.10 0.00 0.00 3.61
3361 3823 1.559368 TGTGCCTTGGCATTAGCAAT 58.441 45.000 17.86 0.00 44.61 3.56
3387 3849 5.816777 ACAAATGTCCATTGAGTTTGGTTTG 59.183 36.000 8.53 0.00 35.48 2.93
3388 3850 4.605640 ATGTCCATTGAGTTTGGTTTGG 57.394 40.909 0.00 0.00 35.64 3.28
3393 3855 4.039004 TCCATTGAGTTTGGTTTGGATGTG 59.961 41.667 0.00 0.00 35.64 3.21
3461 3923 7.112779 AGGTCTCAAATGGGTAGAAGTTAATG 58.887 38.462 0.00 0.00 0.00 1.90
3462 3924 6.183360 GGTCTCAAATGGGTAGAAGTTAATGC 60.183 42.308 0.00 0.00 0.00 3.56
3463 3925 6.374333 GTCTCAAATGGGTAGAAGTTAATGCA 59.626 38.462 0.00 0.00 0.00 3.96
3471 3933 7.277396 TGGGTAGAAGTTAATGCATAGTTACC 58.723 38.462 0.00 5.86 0.00 2.85
3501 3963 1.134946 GGTAATGCATCACAAGGTGGC 59.865 52.381 1.58 0.00 33.87 5.01
3577 4039 6.925610 TGTGCTATTTGGTAAGATAAGCTG 57.074 37.500 0.00 0.00 0.00 4.24
3582 4044 7.173218 TGCTATTTGGTAAGATAAGCTGCATAC 59.827 37.037 1.02 0.00 0.00 2.39
3590 4052 8.405531 GGTAAGATAAGCTGCATACATTTCAAA 58.594 33.333 1.02 0.00 0.00 2.69
3664 4126 8.646004 TCCTTGTCTTCAGATCAAATATAGGAG 58.354 37.037 0.00 0.00 0.00 3.69
3756 4218 2.910319 TGGCAGGTATAAGGACTGTTGT 59.090 45.455 0.00 0.00 34.79 3.32
3757 4219 4.081309 GTGGCAGGTATAAGGACTGTTGTA 60.081 45.833 0.00 0.00 34.79 2.41
3777 4239 8.779303 TGTTGTATTTGTGTTCTATACAAGTGG 58.221 33.333 0.00 0.00 42.29 4.00
3782 4244 3.257375 TGTGTTCTATACAAGTGGACGCT 59.743 43.478 0.00 0.00 38.80 5.07
3785 4247 6.040878 GTGTTCTATACAAGTGGACGCTATT 58.959 40.000 0.00 0.00 38.80 1.73
3787 4249 4.617959 TCTATACAAGTGGACGCTATTGC 58.382 43.478 0.00 0.00 0.00 3.56
3818 4280 2.165167 TGCATCTGCTAAGCTGCTTTT 58.835 42.857 21.29 0.00 44.26 2.27
3829 4291 1.142474 GCTGCTTTTGCCAATGACAC 58.858 50.000 0.00 0.00 46.87 3.67
3830 4292 1.538634 GCTGCTTTTGCCAATGACACA 60.539 47.619 0.00 0.00 46.87 3.72
3837 4299 5.448904 GCTTTTGCCAATGACACAATTTTGT 60.449 36.000 0.00 0.00 40.03 2.83
3869 4331 3.119245 TCGTATTTAGCACTCTCACCACC 60.119 47.826 0.00 0.00 0.00 4.61
3885 4347 0.109412 CACCGGACGTCTTCCAGTAC 60.109 60.000 16.46 0.00 46.29 2.73
3908 4370 6.762333 ACGGAGTACAAACCTAAACTGTTAT 58.238 36.000 0.00 0.00 41.94 1.89
3941 4403 1.661463 AAGCCTCCATTCCTGACAGA 58.339 50.000 3.32 0.00 0.00 3.41
3960 4422 4.068599 CAGAGATATCGAGGACTGCACTA 58.931 47.826 0.00 0.00 0.00 2.74
3981 4443 7.570140 GCACTATGGAGTTTGATTACGATGATG 60.570 40.741 0.00 0.00 31.73 3.07
4058 4520 3.431912 GTGTCGATGCAGTGTTCATAACA 59.568 43.478 0.00 0.00 39.52 2.41
4088 4550 0.679505 TGGAGGGCTACGATGCATAC 59.320 55.000 0.00 0.00 34.04 2.39
4097 4559 4.227538 GCTACGATGCATACGTTGATACT 58.772 43.478 24.68 8.21 43.62 2.12
4139 4601 2.297880 TGAAGTAGTAGCCAGTCGCAAA 59.702 45.455 0.00 0.00 41.38 3.68
4240 4702 4.452733 GGTTCGCGCCTGCTAGGT 62.453 66.667 0.00 0.00 37.80 3.08
4253 4715 0.676736 GCTAGGTAGGCCTGCTACTG 59.323 60.000 21.02 9.59 46.47 2.74
4259 4721 0.253044 TAGGCCTGCTACTGGCTTTG 59.747 55.000 17.99 0.00 45.73 2.77
4270 4732 1.202510 ACTGGCTTTGCGCAATTTTCA 60.203 42.857 25.64 17.66 41.67 2.69
4271 4733 1.865970 CTGGCTTTGCGCAATTTTCAA 59.134 42.857 25.64 6.73 41.67 2.69
4273 4735 1.596727 GGCTTTGCGCAATTTTCAACA 59.403 42.857 25.64 5.07 41.67 3.33
4291 4753 6.785488 TCAACATGTTGTGAGTCAAGATAC 57.215 37.500 31.99 0.00 37.84 2.24
4292 4754 5.405269 TCAACATGTTGTGAGTCAAGATACG 59.595 40.000 31.99 6.75 37.84 3.06
4295 4757 4.577834 TGTTGTGAGTCAAGATACGTGA 57.422 40.909 0.00 0.00 36.66 4.35
4296 4758 5.134202 TGTTGTGAGTCAAGATACGTGAT 57.866 39.130 0.00 0.00 36.66 3.06
4297 4759 6.262193 TGTTGTGAGTCAAGATACGTGATA 57.738 37.500 0.00 0.00 36.66 2.15
4298 4760 6.090783 TGTTGTGAGTCAAGATACGTGATAC 58.909 40.000 0.00 0.00 36.66 2.24
4299 4761 6.072119 TGTTGTGAGTCAAGATACGTGATACT 60.072 38.462 0.00 0.00 36.66 2.12
4300 4762 6.120378 TGTGAGTCAAGATACGTGATACTC 57.880 41.667 0.00 3.52 0.00 2.59
4301 4763 5.066117 TGTGAGTCAAGATACGTGATACTCC 59.934 44.000 0.00 0.00 0.00 3.85
4302 4764 4.579340 TGAGTCAAGATACGTGATACTCCC 59.421 45.833 0.00 0.00 0.00 4.30
4303 4765 4.794334 AGTCAAGATACGTGATACTCCCT 58.206 43.478 0.00 0.00 0.00 4.20
4304 4766 4.822896 AGTCAAGATACGTGATACTCCCTC 59.177 45.833 0.00 0.00 0.00 4.30
4305 4767 4.822896 GTCAAGATACGTGATACTCCCTCT 59.177 45.833 0.00 0.00 0.00 3.69
4306 4768 4.822350 TCAAGATACGTGATACTCCCTCTG 59.178 45.833 0.00 0.00 0.00 3.35
4307 4769 4.440826 AGATACGTGATACTCCCTCTGT 57.559 45.455 0.00 0.00 0.00 3.41
4308 4770 5.563876 AGATACGTGATACTCCCTCTGTA 57.436 43.478 0.00 0.00 0.00 2.74
4309 4771 5.938279 AGATACGTGATACTCCCTCTGTAA 58.062 41.667 0.00 0.00 0.00 2.41
4310 4772 6.363065 AGATACGTGATACTCCCTCTGTAAA 58.637 40.000 0.00 0.00 0.00 2.01
4311 4773 4.985538 ACGTGATACTCCCTCTGTAAAG 57.014 45.455 0.00 0.00 0.00 1.85
4312 4774 4.597004 ACGTGATACTCCCTCTGTAAAGA 58.403 43.478 0.00 0.00 0.00 2.52
4313 4775 5.014858 ACGTGATACTCCCTCTGTAAAGAA 58.985 41.667 0.00 0.00 0.00 2.52
4314 4776 5.479375 ACGTGATACTCCCTCTGTAAAGAAA 59.521 40.000 0.00 0.00 0.00 2.52
4315 4777 6.154706 ACGTGATACTCCCTCTGTAAAGAAAT 59.845 38.462 0.00 0.00 0.00 2.17
4316 4778 7.341256 ACGTGATACTCCCTCTGTAAAGAAATA 59.659 37.037 0.00 0.00 0.00 1.40
4317 4779 8.361139 CGTGATACTCCCTCTGTAAAGAAATAT 58.639 37.037 0.00 0.00 0.00 1.28
4351 4813 7.730364 ATGCTCTTATATTTCTTTACGGTGG 57.270 36.000 0.00 0.00 0.00 4.61
4352 4814 6.053005 TGCTCTTATATTTCTTTACGGTGGG 58.947 40.000 0.00 0.00 0.00 4.61
4353 4815 6.126997 TGCTCTTATATTTCTTTACGGTGGGA 60.127 38.462 0.00 0.00 0.00 4.37
4354 4816 6.424207 GCTCTTATATTTCTTTACGGTGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
4355 4817 7.427989 TCTTATATTTCTTTACGGTGGGAGT 57.572 36.000 0.00 0.00 0.00 3.85
4402 4864 2.271800 CCAGTCAGGCATCGTAGAAAC 58.728 52.381 0.00 0.00 43.58 2.78
4404 4866 2.668457 CAGTCAGGCATCGTAGAAACAC 59.332 50.000 0.00 0.00 43.58 3.32
4405 4867 2.299013 AGTCAGGCATCGTAGAAACACA 59.701 45.455 0.00 0.00 43.58 3.72
4406 4868 3.055819 AGTCAGGCATCGTAGAAACACAT 60.056 43.478 0.00 0.00 43.58 3.21
4470 4934 2.298729 GTGCATAGGGAGATGGAGAGTC 59.701 54.545 0.00 0.00 0.00 3.36
4570 5036 6.403866 AAAAAGCTGATCATGTTTGGTGTA 57.596 33.333 0.00 0.00 0.00 2.90
4626 5092 9.498433 GAATAAAATGATGTTGAAAAACGTTCG 57.502 29.630 0.00 0.00 0.00 3.95
4648 5119 7.062749 TCGTATATTATTATGGGATGGAGGC 57.937 40.000 0.00 0.00 0.00 4.70
4665 5136 4.123506 GGAGGCAGTAGTTTATTGCTCTC 58.876 47.826 4.05 7.92 40.73 3.20
4705 5176 2.563179 TCACTTCAGTCAGGCTTAGTCC 59.437 50.000 0.00 0.00 0.00 3.85
4708 5179 3.584848 ACTTCAGTCAGGCTTAGTCCATT 59.415 43.478 0.00 0.00 0.00 3.16
4778 7596 7.042335 AGTTTATACTGTATGAAGTCACTGGC 58.958 38.462 10.51 0.00 31.99 4.85
4805 7623 9.741647 GCTAGCAAGAAAAAGAAATTATAGCAT 57.258 29.630 10.63 0.00 32.91 3.79
4817 7635 7.054124 AGAAATTATAGCATTGAACCGGAAGA 58.946 34.615 9.46 0.00 0.00 2.87
4835 7653 1.160137 GATGCTTCAACCTTCGTGCT 58.840 50.000 0.00 0.00 0.00 4.40
4871 7689 1.762460 CTACCCTCGTGCCCATCCT 60.762 63.158 0.00 0.00 0.00 3.24
4872 7690 1.749334 CTACCCTCGTGCCCATCCTC 61.749 65.000 0.00 0.00 0.00 3.71
4873 7691 2.238319 TACCCTCGTGCCCATCCTCT 62.238 60.000 0.00 0.00 0.00 3.69
4874 7692 1.457643 CCCTCGTGCCCATCCTCTA 60.458 63.158 0.00 0.00 0.00 2.43
4875 7693 1.742768 CCTCGTGCCCATCCTCTAC 59.257 63.158 0.00 0.00 0.00 2.59
4892 8395 3.854669 CCCCACCTCTAGCCAGCG 61.855 72.222 0.00 0.00 0.00 5.18
4897 8400 1.144936 ACCTCTAGCCAGCGCATTC 59.855 57.895 11.47 0.00 37.52 2.67
4933 8506 2.035331 GCGACCTATCCTCCTTCCCTT 61.035 57.143 0.00 0.00 0.00 3.95
4934 8507 1.689273 CGACCTATCCTCCTTCCCTTG 59.311 57.143 0.00 0.00 0.00 3.61
4948 8521 6.078664 TCCTTCCCTTGAATCTATCTAGGTC 58.921 44.000 5.46 0.00 46.15 3.85
4955 8528 5.932027 TGAATCTATCTAGGTCTCCCTCA 57.068 43.478 0.00 0.00 41.45 3.86
4956 8529 6.281190 TGAATCTATCTAGGTCTCCCTCAA 57.719 41.667 0.00 0.00 41.45 3.02
4961 8536 0.818296 CTAGGTCTCCCTCAACCACG 59.182 60.000 0.00 0.00 41.45 4.94
5022 8597 4.617959 CGCTTCCTAAAATATCTCACCGA 58.382 43.478 0.00 0.00 0.00 4.69
5030 8605 2.847327 ATATCTCACCGAATGGGCAG 57.153 50.000 0.00 0.00 40.62 4.85
5031 8606 0.106708 TATCTCACCGAATGGGCAGC 59.893 55.000 0.00 0.00 40.62 5.25
5045 8620 1.683385 GGGCAGCACAAAACTTCTCTT 59.317 47.619 0.00 0.00 0.00 2.85
5055 8630 4.889409 ACAAAACTTCTCTTTCATGGAGCA 59.111 37.500 0.00 0.00 0.00 4.26
5062 8637 4.321718 TCTCTTTCATGGAGCAAGACTTG 58.678 43.478 11.02 11.02 0.00 3.16
5098 8673 1.006102 CTTGACGTCCTCGCCACTT 60.006 57.895 14.12 0.00 41.18 3.16
5114 8689 5.088739 CGCCACTTATTTCATGTCTGTTTC 58.911 41.667 0.00 0.00 0.00 2.78
5125 8700 1.902508 TGTCTGTTTCTAGGCTCCCTG 59.097 52.381 0.00 0.00 34.61 4.45
5198 8773 2.157668 CGACGCAAAGTGTCTTATTGCT 59.842 45.455 8.80 0.00 45.48 3.91
5208 8783 9.474920 CAAAGTGTCTTATTGCTTGGAAAAATA 57.525 29.630 0.00 0.00 0.00 1.40
5216 8791 9.754382 CTTATTGCTTGGAAAAATATATGCAGT 57.246 29.630 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.671979 ACGGATCATGACATTGCCTG 58.328 50.000 0.00 0.00 0.00 4.85
28 29 5.782047 CAAAAGGATGTAAAGTTGGCATCA 58.218 37.500 16.73 0.00 40.35 3.07
80 82 4.745125 CGACGTGCATTTGACCTAGATAAT 59.255 41.667 0.00 0.00 0.00 1.28
85 87 1.710013 ACGACGTGCATTTGACCTAG 58.290 50.000 0.00 0.00 0.00 3.02
173 175 1.070786 GGACAGCACGGGTCAAGAA 59.929 57.895 0.00 0.00 37.00 2.52
234 236 2.223923 CGGGTGACAATTTCTTTGCCAA 60.224 45.455 0.00 0.00 39.03 4.52
237 239 3.575965 ATCGGGTGACAATTTCTTTGC 57.424 42.857 0.00 0.00 39.03 3.68
238 240 7.938563 TTTTAATCGGGTGACAATTTCTTTG 57.061 32.000 0.00 0.00 41.36 2.77
276 278 8.680903 ACTAATTCTTGGTTTGAATGCTGATAG 58.319 33.333 0.00 0.00 34.74 2.08
395 402 8.327941 TCTTGAAGAATGTTTACTCATGGAAG 57.672 34.615 0.00 0.00 0.00 3.46
398 405 7.678947 ACTCTTGAAGAATGTTTACTCATGG 57.321 36.000 0.00 0.00 0.00 3.66
400 407 8.499162 CGAAACTCTTGAAGAATGTTTACTCAT 58.501 33.333 11.14 0.00 32.01 2.90
447 454 1.003545 CATTTGCCACGGAGCGATTAG 60.004 52.381 0.00 0.00 34.65 1.73
610 619 5.107104 GCGGTTTCATCATTTTCCTTTTTCC 60.107 40.000 0.00 0.00 0.00 3.13
663 675 0.734942 ACGTGGGTGCGTTTATCTCG 60.735 55.000 0.00 0.00 43.04 4.04
696 708 0.614415 TGGTTGGTGGCATGGGATTC 60.614 55.000 0.00 0.00 0.00 2.52
705 717 0.809636 GTTGTTTGCTGGTTGGTGGC 60.810 55.000 0.00 0.00 0.00 5.01
716 728 1.374560 GTTTTGGGTGGGTTGTTTGC 58.625 50.000 0.00 0.00 0.00 3.68
724 736 1.680989 GATCCGGGTTTTGGGTGGG 60.681 63.158 0.00 0.00 0.00 4.61
735 747 1.301244 CTGCTGAATCGGATCCGGG 60.301 63.158 32.79 18.10 40.25 5.73
791 837 1.152546 GAGTGTGGGGGCAAAACCT 60.153 57.895 0.00 0.00 39.10 3.50
842 1097 2.781158 GGCTCGGACTCTGCTCCTC 61.781 68.421 0.00 0.00 0.00 3.71
895 1150 2.685743 TCCGCGGGGGATTTGAGA 60.686 61.111 27.83 0.00 40.94 3.27
906 1161 2.892425 GAACCAGCAGATCCGCGG 60.892 66.667 22.12 22.12 36.85 6.46
907 1162 2.892425 GGAACCAGCAGATCCGCG 60.892 66.667 0.00 0.00 36.85 6.46
926 1181 4.143333 GCGCGCTCCTAACCCTCA 62.143 66.667 26.67 0.00 0.00 3.86
927 1182 4.893601 GGCGCGCTCCTAACCCTC 62.894 72.222 32.29 5.91 0.00 4.30
978 1260 3.711782 CTCCCCTCCCCTCCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
987 1278 4.247380 CTCATGCGCCTCCCCTCC 62.247 72.222 4.18 0.00 0.00 4.30
988 1279 4.247380 CCTCATGCGCCTCCCCTC 62.247 72.222 4.18 0.00 0.00 4.30
989 1280 4.804420 TCCTCATGCGCCTCCCCT 62.804 66.667 4.18 0.00 0.00 4.79
990 1281 3.125376 AATCCTCATGCGCCTCCCC 62.125 63.158 4.18 0.00 0.00 4.81
1185 1482 3.307906 TCCCACCACCGGAACTCG 61.308 66.667 9.46 0.00 38.88 4.18
1233 1530 6.560253 ACAAAGTAATCACGAGATTTGCTT 57.440 33.333 13.34 14.01 41.64 3.91
1237 1534 6.425721 TCCGAAACAAAGTAATCACGAGATTT 59.574 34.615 13.34 0.00 41.64 2.17
1241 1538 5.779806 ATCCGAAACAAAGTAATCACGAG 57.220 39.130 0.00 0.00 0.00 4.18
1257 1554 4.164981 ACACTATGGGCCTATAATCCGAA 58.835 43.478 10.38 0.00 0.00 4.30
1259 1556 5.601662 CATACACTATGGGCCTATAATCCG 58.398 45.833 10.38 1.08 32.55 4.18
1349 1649 4.267928 CAGTTTAAAAGAGTCGCCCTATCG 59.732 45.833 0.00 0.00 0.00 2.92
1362 1662 5.301805 ACACCCTTCATCACCAGTTTAAAAG 59.698 40.000 0.00 0.00 0.00 2.27
1419 1720 1.553248 CCCAGTGTAGATGGAACCGAA 59.447 52.381 0.00 0.00 40.51 4.30
1425 1726 1.692749 GGCCCCCAGTGTAGATGGA 60.693 63.158 0.00 0.00 40.51 3.41
1442 1743 8.437274 AACCAGATGTAACCCTTATATAGAGG 57.563 38.462 4.74 4.74 0.00 3.69
1444 1745 8.014263 TGGAACCAGATGTAACCCTTATATAGA 58.986 37.037 0.00 0.00 0.00 1.98
1445 1746 8.202461 TGGAACCAGATGTAACCCTTATATAG 57.798 38.462 0.00 0.00 0.00 1.31
1493 1796 4.407621 TCTGGACAAAACTAACTGTGGAGA 59.592 41.667 0.00 0.00 0.00 3.71
1498 1801 5.594317 AGCAATTCTGGACAAAACTAACTGT 59.406 36.000 0.00 0.00 0.00 3.55
1500 1803 5.507985 GCAGCAATTCTGGACAAAACTAACT 60.508 40.000 6.92 0.00 43.06 2.24
1512 1815 4.217983 AGAAGAAGAAAGCAGCAATTCTGG 59.782 41.667 12.72 0.00 43.06 3.86
1566 1869 1.155424 TCCAACAGCCGAACGTCAAC 61.155 55.000 0.00 0.00 0.00 3.18
1597 1900 1.333308 CAACAATCACCGCTCACAACA 59.667 47.619 0.00 0.00 0.00 3.33
1607 1910 2.687935 ACCAGACACAACAACAATCACC 59.312 45.455 0.00 0.00 0.00 4.02
1828 2131 3.130340 CACCTAACAACAGCAAACAAGGT 59.870 43.478 0.00 0.00 36.55 3.50
1834 2137 3.759086 TCACAACACCTAACAACAGCAAA 59.241 39.130 0.00 0.00 0.00 3.68
1885 2189 5.044428 AGACACGTCACAGTCTTATACAC 57.956 43.478 0.68 0.00 42.12 2.90
1893 2197 2.999507 ATCAGAGACACGTCACAGTC 57.000 50.000 0.00 0.00 35.02 3.51
1927 2231 6.125029 CAGATGGAGGTTGGACAAATTAGAT 58.875 40.000 0.00 0.00 0.00 1.98
2110 2415 9.618410 CAAAACTCAAAATACAAACGAAATCAC 57.382 29.630 0.00 0.00 0.00 3.06
2135 2440 8.303780 TGGATGGAATTGCACTTATTAATTCA 57.696 30.769 0.12 0.00 40.70 2.57
2146 2451 4.297299 CACACTATGGATGGAATTGCAC 57.703 45.455 0.12 0.00 0.00 4.57
2163 2468 2.148916 TGTCTGTGAATCGACCACAC 57.851 50.000 15.86 12.98 39.36 3.82
2168 2473 1.009829 GGGCATGTCTGTGAATCGAC 58.990 55.000 0.00 0.00 0.00 4.20
2170 2475 0.392863 TGGGGCATGTCTGTGAATCG 60.393 55.000 0.00 0.00 0.00 3.34
2176 2481 0.254178 GACTGATGGGGCATGTCTGT 59.746 55.000 0.00 0.00 0.00 3.41
2180 2485 1.487976 CAGTAGACTGATGGGGCATGT 59.512 52.381 3.45 0.00 46.59 3.21
2186 2491 3.340814 AAAGCACAGTAGACTGATGGG 57.659 47.619 16.44 4.31 46.59 4.00
2193 2506 6.530534 TCGCTAATTAGAAAAGCACAGTAGAC 59.469 38.462 16.85 0.00 35.98 2.59
2211 2524 9.325198 TCATCAGTACATATTTGTTTCGCTAAT 57.675 29.630 0.00 0.00 37.28 1.73
2263 2576 2.158914 TCACAAGGTGATCGATCCCATG 60.159 50.000 25.45 24.89 37.67 3.66
2307 2620 1.788229 TATCTTCGAGGGATGGTGCA 58.212 50.000 11.56 0.00 0.00 4.57
2319 2632 4.637574 GATGGCTCGACAAATATCTTCG 57.362 45.455 0.00 0.00 0.00 3.79
2340 2653 4.116961 TGAGCTTACGGTGGATAAAATCG 58.883 43.478 0.00 0.00 0.00 3.34
2359 2672 5.067413 ACTTGCATCTAAGAAATGGCATGAG 59.933 40.000 0.00 0.00 0.00 2.90
2377 2690 8.087136 TGCAGTTTTAATGATTTATCACTTGCA 58.913 29.630 0.00 0.00 40.03 4.08
2398 2711 4.080129 ACACCAGGAGAATTGATATGCAGT 60.080 41.667 0.00 0.00 0.00 4.40
2401 2714 6.072286 CCATAACACCAGGAGAATTGATATGC 60.072 42.308 0.00 0.00 0.00 3.14
2481 2810 3.375299 AGTTGACCGCAAGCTATCATTTC 59.625 43.478 0.00 0.00 34.01 2.17
2483 2812 2.679837 CAGTTGACCGCAAGCTATCATT 59.320 45.455 0.00 0.00 34.01 2.57
2507 2836 7.173218 AGACAATGTACACAATACTTGGTTCAG 59.827 37.037 0.00 0.00 34.12 3.02
2513 2844 8.443160 CCTAACAGACAATGTACACAATACTTG 58.557 37.037 0.00 0.00 43.00 3.16
2514 2845 8.154856 ACCTAACAGACAATGTACACAATACTT 58.845 33.333 0.00 0.00 43.00 2.24
2521 2852 4.553323 ACGACCTAACAGACAATGTACAC 58.447 43.478 0.00 0.00 43.00 2.90
2532 2863 5.506483 CCATCAGATACTGACGACCTAACAG 60.506 48.000 3.54 0.00 43.63 3.16
2583 2914 6.330278 GGGGTTTGCATTAAAAGATAGTGTC 58.670 40.000 0.00 0.00 0.00 3.67
2609 2940 0.034767 CTTCATCCTGCTGCTGGGAA 60.035 55.000 23.07 17.74 35.08 3.97
2615 2946 0.529378 CAAACCCTTCATCCTGCTGC 59.471 55.000 0.00 0.00 0.00 5.25
2621 2952 2.365293 ACAGCAAACAAACCCTTCATCC 59.635 45.455 0.00 0.00 0.00 3.51
2648 2979 2.215196 TGTCATGCATGATGTCATCCG 58.785 47.619 30.89 0.00 39.30 4.18
2731 3062 6.534634 ACTATCCTTGTCTACATAAATGGCC 58.465 40.000 0.00 0.00 0.00 5.36
2733 3064 9.477484 GTGTACTATCCTTGTCTACATAAATGG 57.523 37.037 0.00 0.00 0.00 3.16
2780 3171 9.092338 TGTAGTTCCTTGATAGTTTACCAGTAA 57.908 33.333 0.00 0.00 0.00 2.24
2783 3174 9.449719 AAATGTAGTTCCTTGATAGTTTACCAG 57.550 33.333 0.00 0.00 0.00 4.00
2807 3198 9.141400 GTGTGGTTTGTGAAATTACTTGTTAAA 57.859 29.630 0.00 0.00 0.00 1.52
2836 3227 2.289072 CCAGTTCCGTTGTGACTCTGAT 60.289 50.000 0.00 0.00 0.00 2.90
2838 3229 1.502231 CCAGTTCCGTTGTGACTCTG 58.498 55.000 0.00 0.00 0.00 3.35
2839 3230 0.249911 GCCAGTTCCGTTGTGACTCT 60.250 55.000 0.00 0.00 0.00 3.24
2840 3231 0.531974 TGCCAGTTCCGTTGTGACTC 60.532 55.000 0.00 0.00 0.00 3.36
2841 3232 0.532862 CTGCCAGTTCCGTTGTGACT 60.533 55.000 0.00 0.00 0.00 3.41
2842 3233 1.507141 CCTGCCAGTTCCGTTGTGAC 61.507 60.000 0.00 0.00 0.00 3.67
2843 3234 1.227823 CCTGCCAGTTCCGTTGTGA 60.228 57.895 0.00 0.00 0.00 3.58
2844 3235 1.101049 AACCTGCCAGTTCCGTTGTG 61.101 55.000 0.00 0.00 0.00 3.33
2869 3294 1.002430 GCTTGTGACTCTGATGGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
2870 3295 1.446907 GCTTGTGACTCTGATGGGTG 58.553 55.000 0.00 0.00 0.00 4.61
2890 3315 6.428159 ACTTCTTCATGTTCATGGACACTTAC 59.572 38.462 9.59 0.00 31.30 2.34
2905 3330 3.629398 GGGATAGGTGCAACTTCTTCATG 59.371 47.826 10.94 0.00 36.74 3.07
2906 3331 3.266772 TGGGATAGGTGCAACTTCTTCAT 59.733 43.478 10.94 0.00 36.74 2.57
2907 3332 2.642311 TGGGATAGGTGCAACTTCTTCA 59.358 45.455 10.94 1.06 36.74 3.02
2908 3333 3.350219 TGGGATAGGTGCAACTTCTTC 57.650 47.619 10.94 4.94 36.74 2.87
2909 3334 3.806949 TTGGGATAGGTGCAACTTCTT 57.193 42.857 10.94 0.00 36.74 2.52
2910 3335 4.263905 TGAATTGGGATAGGTGCAACTTCT 60.264 41.667 10.94 0.00 36.74 2.85
2943 3368 2.421739 GTGTCACACCCGTCAGCT 59.578 61.111 0.00 0.00 0.00 4.24
3001 3434 3.941483 CACCCCATTTCTGTATCAGTGTC 59.059 47.826 0.00 0.00 32.61 3.67
3115 3552 2.984155 AACAGCAGCAGCAGCAGG 60.984 61.111 12.92 6.25 45.49 4.85
3128 3565 6.480320 AGAACAAGCTCTAGTAACAACAACAG 59.520 38.462 0.00 0.00 0.00 3.16
3129 3566 6.257849 CAGAACAAGCTCTAGTAACAACAACA 59.742 38.462 0.00 0.00 0.00 3.33
3151 3600 3.845781 ACAAGAGAACTGGAAAGCAGA 57.154 42.857 0.00 0.00 0.00 4.26
3155 3604 6.642540 GGCATTAAAACAAGAGAACTGGAAAG 59.357 38.462 0.00 0.00 0.00 2.62
3156 3605 6.512297 GGCATTAAAACAAGAGAACTGGAAA 58.488 36.000 0.00 0.00 0.00 3.13
3159 3608 4.215399 TCGGCATTAAAACAAGAGAACTGG 59.785 41.667 0.00 0.00 0.00 4.00
3209 3664 4.427096 TTGCTGTTTGAAAACGTTCAGA 57.573 36.364 14.54 0.00 44.49 3.27
3211 3666 3.305629 GCATTGCTGTTTGAAAACGTTCA 59.694 39.130 0.00 0.00 42.12 3.18
3267 3729 4.094146 GCTGTCAAGGAAGCTTGAAGATAC 59.906 45.833 2.10 0.00 43.84 2.24
3288 3750 1.228367 CTTGGTCAACAGGGCAGCT 60.228 57.895 0.00 0.00 0.00 4.24
3290 3752 0.038744 ATCCTTGGTCAACAGGGCAG 59.961 55.000 0.00 0.00 45.52 4.85
3292 3754 0.967380 CCATCCTTGGTCAACAGGGC 60.967 60.000 0.00 0.00 45.52 5.19
3322 3784 9.734984 AGGCACAAGTGTACTAAATTAGTAAAT 57.265 29.630 13.80 1.70 42.45 1.40
3323 3785 9.563748 AAGGCACAAGTGTACTAAATTAGTAAA 57.436 29.630 13.80 6.70 42.45 2.01
3324 3786 8.995220 CAAGGCACAAGTGTACTAAATTAGTAA 58.005 33.333 13.80 3.41 42.45 2.24
3325 3787 7.604927 CCAAGGCACAAGTGTACTAAATTAGTA 59.395 37.037 8.67 8.67 40.14 1.82
3326 3788 6.430000 CCAAGGCACAAGTGTACTAAATTAGT 59.570 38.462 10.75 10.75 42.68 2.24
3327 3789 6.622896 GCCAAGGCACAAGTGTACTAAATTAG 60.623 42.308 6.14 0.00 41.49 1.73
3328 3790 5.182380 GCCAAGGCACAAGTGTACTAAATTA 59.818 40.000 6.14 0.00 41.49 1.40
3329 3791 4.022329 GCCAAGGCACAAGTGTACTAAATT 60.022 41.667 6.14 0.00 41.49 1.82
3330 3792 3.506067 GCCAAGGCACAAGTGTACTAAAT 59.494 43.478 6.14 0.00 41.49 1.40
3331 3793 2.882137 GCCAAGGCACAAGTGTACTAAA 59.118 45.455 6.14 0.00 41.49 1.85
3332 3794 2.500229 GCCAAGGCACAAGTGTACTAA 58.500 47.619 6.14 0.00 41.49 2.24
3333 3795 2.178912 GCCAAGGCACAAGTGTACTA 57.821 50.000 6.14 0.00 41.49 1.82
3334 3796 3.021451 GCCAAGGCACAAGTGTACT 57.979 52.632 6.14 0.00 41.49 2.73
3351 3813 7.492020 TCAATGGACATTTGTTATTGCTAATGC 59.508 33.333 12.81 0.00 35.87 3.56
3361 3823 6.723298 ACCAAACTCAATGGACATTTGTTA 57.277 33.333 11.17 0.00 40.56 2.41
3432 3894 7.272144 ACTTCTACCCATTTGAGACCTATTT 57.728 36.000 0.00 0.00 0.00 1.40
3471 3933 5.771469 TGTGATGCATTACCTGAAAAACAG 58.229 37.500 18.01 0.00 45.36 3.16
3483 3945 1.818060 GTGCCACCTTGTGATGCATTA 59.182 47.619 0.00 0.00 34.46 1.90
3489 3951 4.019321 ACATAAGTAGTGCCACCTTGTGAT 60.019 41.667 14.31 1.21 35.23 3.06
3501 3963 7.148573 CCAGCTTTACAGTGAACATAAGTAGTG 60.149 40.741 0.00 0.00 0.00 2.74
3607 4069 3.759527 CTGTCATCAGCAACTGAATGG 57.240 47.619 0.74 0.00 44.04 3.16
3628 4090 8.202811 TGATCTGAAGACAAGGAAGATGATAAG 58.797 37.037 0.00 0.00 0.00 1.73
3633 4095 7.627298 ATTTGATCTGAAGACAAGGAAGATG 57.373 36.000 0.00 0.00 0.00 2.90
3636 4098 9.270640 CCTATATTTGATCTGAAGACAAGGAAG 57.729 37.037 0.00 0.00 0.00 3.46
3664 4126 0.392729 AGCTGCTTCAGGAGTCATGC 60.393 55.000 0.00 0.00 35.78 4.06
3728 4190 2.500098 TCCTTATACCTGCCACTGTGAC 59.500 50.000 9.86 0.00 0.00 3.67
3756 4218 6.311935 GCGTCCACTTGTATAGAACACAAATA 59.688 38.462 0.00 0.00 38.00 1.40
3757 4219 5.121768 GCGTCCACTTGTATAGAACACAAAT 59.878 40.000 0.00 0.00 38.00 2.32
3777 4239 5.084722 GCATGATTGAATAGCAATAGCGTC 58.915 41.667 0.00 0.00 46.90 5.19
3782 4244 6.433093 AGCAGATGCATGATTGAATAGCAATA 59.567 34.615 2.46 0.00 44.71 1.90
3785 4247 4.142038 AGCAGATGCATGATTGAATAGCA 58.858 39.130 2.46 2.63 45.16 3.49
3787 4249 6.149640 AGCTTAGCAGATGCATGATTGAATAG 59.850 38.462 2.46 0.00 45.16 1.73
3818 4280 4.798924 GCCTACAAAATTGTGTCATTGGCA 60.799 41.667 20.62 0.00 42.31 4.92
3837 4299 6.264744 AGAGTGCTAAATACGATAACAGCCTA 59.735 38.462 0.00 0.00 0.00 3.93
3885 4347 7.095270 AGATAACAGTTTAGGTTTGTACTCCG 58.905 38.462 0.00 0.00 0.00 4.63
3941 4403 3.761218 CCATAGTGCAGTCCTCGATATCT 59.239 47.826 0.00 0.00 0.00 1.98
3960 4422 4.516698 GCCATCATCGTAATCAAACTCCAT 59.483 41.667 0.00 0.00 0.00 3.41
3981 4443 1.886886 TGACAAAGAGGTAAACCGCC 58.113 50.000 0.00 0.00 42.08 6.13
4058 4520 0.326427 AGCCCTCCAGATCTGCTTCT 60.326 55.000 17.76 6.33 0.00 2.85
4088 4550 3.543680 ACATCCTTCCCAGTATCAACG 57.456 47.619 0.00 0.00 0.00 4.10
4097 4559 3.524095 AATGACACAACATCCTTCCCA 57.476 42.857 0.00 0.00 0.00 4.37
4214 4676 2.733671 GGCGCGAACCTCGGTAAAC 61.734 63.158 12.10 0.00 40.84 2.01
4259 4721 3.244814 TCACAACATGTTGAAAATTGCGC 59.755 39.130 38.30 0.00 42.93 6.09
4270 4732 5.177511 CACGTATCTTGACTCACAACATGTT 59.822 40.000 4.92 4.92 34.56 2.71
4271 4733 4.686091 CACGTATCTTGACTCACAACATGT 59.314 41.667 0.00 0.00 34.56 3.21
4273 4735 5.134202 TCACGTATCTTGACTCACAACAT 57.866 39.130 0.00 0.00 34.56 2.71
4325 4787 8.621286 CCACCGTAAAGAAATATAAGAGCATTT 58.379 33.333 0.00 0.00 0.00 2.32
4326 4788 7.228706 CCCACCGTAAAGAAATATAAGAGCATT 59.771 37.037 0.00 0.00 0.00 3.56
4327 4789 6.710744 CCCACCGTAAAGAAATATAAGAGCAT 59.289 38.462 0.00 0.00 0.00 3.79
4328 4790 6.053005 CCCACCGTAAAGAAATATAAGAGCA 58.947 40.000 0.00 0.00 0.00 4.26
4329 4791 6.285990 TCCCACCGTAAAGAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
4330 4792 7.498443 ACTCCCACCGTAAAGAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
4331 4793 7.427989 ACTCCCACCGTAAAGAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
4332 4794 8.199449 TGTACTCCCACCGTAAAGAAATATAAG 58.801 37.037 0.00 0.00 0.00 1.73
4333 4795 8.076910 TGTACTCCCACCGTAAAGAAATATAA 57.923 34.615 0.00 0.00 0.00 0.98
4334 4796 7.658525 TGTACTCCCACCGTAAAGAAATATA 57.341 36.000 0.00 0.00 0.00 0.86
4335 4797 6.549433 TGTACTCCCACCGTAAAGAAATAT 57.451 37.500 0.00 0.00 0.00 1.28
4336 4798 5.999205 TGTACTCCCACCGTAAAGAAATA 57.001 39.130 0.00 0.00 0.00 1.40
4337 4799 4.895668 TGTACTCCCACCGTAAAGAAAT 57.104 40.909 0.00 0.00 0.00 2.17
4338 4800 4.895668 ATGTACTCCCACCGTAAAGAAA 57.104 40.909 0.00 0.00 0.00 2.52
4339 4801 4.895668 AATGTACTCCCACCGTAAAGAA 57.104 40.909 0.00 0.00 0.00 2.52
4340 4802 5.018809 ACTAATGTACTCCCACCGTAAAGA 58.981 41.667 0.00 0.00 0.00 2.52
4341 4803 5.334724 ACTAATGTACTCCCACCGTAAAG 57.665 43.478 0.00 0.00 0.00 1.85
4342 4804 6.186957 TCTACTAATGTACTCCCACCGTAAA 58.813 40.000 0.00 0.00 0.00 2.01
4343 4805 5.754782 TCTACTAATGTACTCCCACCGTAA 58.245 41.667 0.00 0.00 0.00 3.18
4344 4806 5.372343 TCTACTAATGTACTCCCACCGTA 57.628 43.478 0.00 0.00 0.00 4.02
4345 4807 4.240881 TCTACTAATGTACTCCCACCGT 57.759 45.455 0.00 0.00 0.00 4.83
4346 4808 5.415077 CCTATCTACTAATGTACTCCCACCG 59.585 48.000 0.00 0.00 0.00 4.94
4347 4809 5.185442 GCCTATCTACTAATGTACTCCCACC 59.815 48.000 0.00 0.00 0.00 4.61
4348 4810 5.773680 TGCCTATCTACTAATGTACTCCCAC 59.226 44.000 0.00 0.00 0.00 4.61
4349 4811 5.960704 TGCCTATCTACTAATGTACTCCCA 58.039 41.667 0.00 0.00 0.00 4.37
4350 4812 5.419471 CCTGCCTATCTACTAATGTACTCCC 59.581 48.000 0.00 0.00 0.00 4.30
4351 4813 5.105675 GCCTGCCTATCTACTAATGTACTCC 60.106 48.000 0.00 0.00 0.00 3.85
4352 4814 5.477291 TGCCTGCCTATCTACTAATGTACTC 59.523 44.000 0.00 0.00 0.00 2.59
4353 4815 5.394738 TGCCTGCCTATCTACTAATGTACT 58.605 41.667 0.00 0.00 0.00 2.73
4354 4816 5.244178 ACTGCCTGCCTATCTACTAATGTAC 59.756 44.000 0.00 0.00 0.00 2.90
4355 4817 5.394738 ACTGCCTGCCTATCTACTAATGTA 58.605 41.667 0.00 0.00 0.00 2.29
4402 4864 1.464608 CCGTGGCTGTAGAAACATGTG 59.535 52.381 0.00 0.00 34.37 3.21
4404 4866 0.447801 GCCGTGGCTGTAGAAACATG 59.552 55.000 2.98 0.00 38.26 3.21
4405 4867 0.036164 TGCCGTGGCTGTAGAAACAT 59.964 50.000 12.84 0.00 42.51 2.71
4406 4868 0.179043 TTGCCGTGGCTGTAGAAACA 60.179 50.000 12.84 0.00 42.51 2.83
4470 4934 2.959516 TCGGCACATTCACAACTCTAG 58.040 47.619 0.00 0.00 0.00 2.43
4626 5092 7.806180 ACTGCCTCCATCCCATAATAATATAC 58.194 38.462 0.00 0.00 0.00 1.47
4648 5119 7.655328 CCATAAGAGGAGAGCAATAAACTACTG 59.345 40.741 0.00 0.00 0.00 2.74
4665 5136 4.163078 AGTGACCAGATTCACCATAAGAGG 59.837 45.833 0.00 0.00 46.14 3.69
4705 5176 3.131755 GGAGGAGGCATTTCTTTCCAATG 59.868 47.826 0.00 0.00 35.12 2.82
4708 5179 1.710244 TGGAGGAGGCATTTCTTTCCA 59.290 47.619 0.00 0.00 32.38 3.53
4749 7567 9.809096 AGTGACTTCATACAGTATAAACTCATG 57.191 33.333 0.00 0.00 31.97 3.07
4750 7568 9.809096 CAGTGACTTCATACAGTATAAACTCAT 57.191 33.333 0.00 0.00 31.97 2.90
4752 7570 7.222999 GCCAGTGACTTCATACAGTATAAACTC 59.777 40.741 0.00 0.00 31.97 3.01
4754 7572 6.019801 CGCCAGTGACTTCATACAGTATAAAC 60.020 42.308 0.00 0.00 0.00 2.01
4755 7573 6.040247 CGCCAGTGACTTCATACAGTATAAA 58.960 40.000 0.00 0.00 0.00 1.40
4756 7574 5.588240 CGCCAGTGACTTCATACAGTATAA 58.412 41.667 0.00 0.00 0.00 0.98
4757 7575 4.499188 GCGCCAGTGACTTCATACAGTATA 60.499 45.833 0.00 0.00 0.00 1.47
4758 7576 3.738281 GCGCCAGTGACTTCATACAGTAT 60.738 47.826 0.00 0.00 0.00 2.12
4761 7579 1.002366 GCGCCAGTGACTTCATACAG 58.998 55.000 0.00 0.00 0.00 2.74
4762 7580 0.608130 AGCGCCAGTGACTTCATACA 59.392 50.000 2.29 0.00 0.00 2.29
4763 7581 2.464865 CTAGCGCCAGTGACTTCATAC 58.535 52.381 2.29 0.00 0.00 2.39
4778 7596 7.910162 TGCTATAATTTCTTTTTCTTGCTAGCG 59.090 33.333 10.77 0.00 31.65 4.26
4791 7609 7.556275 TCTTCCGGTTCAATGCTATAATTTCTT 59.444 33.333 0.00 0.00 0.00 2.52
4792 7610 7.054124 TCTTCCGGTTCAATGCTATAATTTCT 58.946 34.615 0.00 0.00 0.00 2.52
4793 7611 7.259290 TCTTCCGGTTCAATGCTATAATTTC 57.741 36.000 0.00 0.00 0.00 2.17
4794 7612 7.651808 CATCTTCCGGTTCAATGCTATAATTT 58.348 34.615 0.00 0.00 0.00 1.82
4795 7613 6.294176 GCATCTTCCGGTTCAATGCTATAATT 60.294 38.462 19.39 0.00 39.62 1.40
4796 7614 5.182001 GCATCTTCCGGTTCAATGCTATAAT 59.818 40.000 19.39 0.00 39.62 1.28
4805 7623 2.559698 TGAAGCATCTTCCGGTTCAA 57.440 45.000 0.00 0.00 45.15 2.69
4810 7628 1.740025 GAAGGTTGAAGCATCTTCCGG 59.260 52.381 0.00 0.00 31.99 5.14
4817 7635 1.160137 GAGCACGAAGGTTGAAGCAT 58.840 50.000 0.00 0.00 0.00 3.79
4835 7653 4.394729 GGTAGTTTTGTGGAAGTGGATGA 58.605 43.478 0.00 0.00 0.00 2.92
4871 7689 0.261991 CTGGCTAGAGGTGGGGTAGA 59.738 60.000 0.00 0.00 0.00 2.59
4872 7690 1.403687 GCTGGCTAGAGGTGGGGTAG 61.404 65.000 0.00 0.00 0.00 3.18
4873 7691 1.382695 GCTGGCTAGAGGTGGGGTA 60.383 63.158 0.00 0.00 0.00 3.69
4874 7692 2.689034 GCTGGCTAGAGGTGGGGT 60.689 66.667 0.00 0.00 0.00 4.95
4875 7693 3.854669 CGCTGGCTAGAGGTGGGG 61.855 72.222 0.00 0.00 0.00 4.96
4948 8521 4.680237 TGCGCGTGGTTGAGGGAG 62.680 66.667 8.43 0.00 0.00 4.30
4961 8536 4.821589 CGAGGAAGGGAGGTGCGC 62.822 72.222 0.00 0.00 0.00 6.09
5022 8597 2.036346 GAGAAGTTTTGTGCTGCCCATT 59.964 45.455 0.00 0.00 0.00 3.16
5030 8605 5.186996 TCCATGAAAGAGAAGTTTTGTGC 57.813 39.130 0.00 0.00 0.00 4.57
5031 8606 5.218139 GCTCCATGAAAGAGAAGTTTTGTG 58.782 41.667 0.00 0.00 32.86 3.33
5055 8630 2.765699 GGAGGAGATGAGAGCAAGTCTT 59.234 50.000 0.00 0.00 34.71 3.01
5062 8637 2.071778 AGAGTGGAGGAGATGAGAGC 57.928 55.000 0.00 0.00 0.00 4.09
5073 8648 0.169230 CGAGGACGTCAAGAGTGGAG 59.831 60.000 18.91 0.00 34.56 3.86
5098 8673 6.349300 GGAGCCTAGAAACAGACATGAAATA 58.651 40.000 0.00 0.00 0.00 1.40
5114 8689 2.956132 TGATCTTCTCAGGGAGCCTAG 58.044 52.381 0.00 0.00 29.64 3.02
5125 8700 6.597614 CGGCTAGCATTTTAATGATCTTCTC 58.402 40.000 18.24 0.00 38.70 2.87
5208 8783 5.068198 CACCAGCATTTTTAGGACTGCATAT 59.932 40.000 0.00 0.00 37.09 1.78
5216 8791 3.806949 AGACCACCAGCATTTTTAGGA 57.193 42.857 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.