AutoCloner

Multiple sequence alignment - TraesCS3D01G276500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G276500	chr3D	100.000	1993	0	0	1917	3909	383535173	383537165	0.000000e+00	3681
1	TraesCS3D01G276500	chr3D	100.000	1675	0	0	1	1675	383533257	383534931	0.000000e+00	3094
2	TraesCS3D01G276500	chr3D	86.424	604	76	5	1	602	34726540	34727139	0.000000e+00	656
3	TraesCS3D01G276500	chr3D	95.402	87	4	0	1589	1675	383534791	383534877	5.270000e-29	139
4	TraesCS3D01G276500	chr3D	95.402	87	4	0	1535	1621	383534845	383534931	5.270000e-29	139
5	TraesCS3D01G276500	chr3A	95.578	1990	54	9	1917	3892	506433936	506435905	0.000000e+00	3157
6	TraesCS3D01G276500	chr3A	97.720	921	21	0	755	1675	506432634	506433554	0.000000e+00	1585
7	TraesCS3D01G276500	chr3A	88.966	145	12	4	622	765	506432440	506432581	4.010000e-40	176
8	TraesCS3D01G276500	chr3A	95.402	87	4	0	1535	1621	506433468	506433554	5.270000e-29	139
9	TraesCS3D01G276500	chr3A	96.970	66	2	0	1595	1660	506433855	506433920	1.150000e-20	111
10	TraesCS3D01G276500	chr3A	96.875	64	2	0	1543	1606	506433857	506433920	1.490000e-19	108
11	TraesCS3D01G276500	chr3B	96.632	1811	49	2	1917	3716	499165441	499167250	0.000000e+00	2996
12	TraesCS3D01G276500	chr3B	94.782	1054	43	7	622	1675	499164291	499165332	0.000000e+00	1631
13	TraesCS3D01G276500	chr3B	88.792	571	61	3	2	572	57394175	57394742	0.000000e+00	697
14	TraesCS3D01G276500	chr3B	88.462	572	64	2	1	572	57420945	57421514	0.000000e+00	689
15	TraesCS3D01G276500	chr3B	94.709	189	8	1	3706	3894	499167453	499167639	3.820000e-75	292
16	TraesCS3D01G276500	chr3B	95.035	141	7	0	1535	1675	499165246	499165386	5.080000e-54	222
17	TraesCS3D01G276500	chr3B	94.444	126	7	0	1535	1660	499165300	499165425	1.110000e-45	195
18	TraesCS3D01G276500	chr3B	96.552	87	3	0	1589	1675	499165192	499165278	1.130000e-30	145
19	TraesCS3D01G276500	chr3B	94.444	72	4	0	1535	1606	499165354	499165425	1.150000e-20	111
20	TraesCS3D01G276500	chr7D	91.228	570	44	3	4	572	58772154	58771590	0.000000e+00	771
21	TraesCS3D01G276500	chr5D	91.712	555	44	2	1	555	76257057	76257609	0.000000e+00	769
22	TraesCS3D01G276500	chr5B	91.697	554	44	2	1	554	84954949	84955500	0.000000e+00	767
23	TraesCS3D01G276500	chr6B	88.629	598	60	7	2	596	566557390	566556798	0.000000e+00	721
24	TraesCS3D01G276500	chr4A	89.510	572	56	4	6	574	618681099	618680529	0.000000e+00	721
25	TraesCS3D01G276500	chr1B	88.927	587	62	3	1	587	614498908	614498325	0.000000e+00	721

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G276500	chr3D	383533257	383537165	3908	False	1763.250000	3681	97.701000	1	3909	4	chr3D.!!$F2	3908
1	TraesCS3D01G276500	chr3D	34726540	34727139	599	False	656.000000	656	86.424000	1	602	1	chr3D.!!$F1	601
2	TraesCS3D01G276500	chr3A	506432440	506435905	3465	False	879.333333	3157	95.251833	622	3892	6	chr3A.!!$F1	3270
3	TraesCS3D01G276500	chr3B	499164291	499167639	3348	False	798.857143	2996	95.228286	622	3894	7	chr3B.!!$F3	3272
4	TraesCS3D01G276500	chr3B	57394175	57394742	567	False	697.000000	697	88.792000	2	572	1	chr3B.!!$F1	570
5	TraesCS3D01G276500	chr3B	57420945	57421514	569	False	689.000000	689	88.462000	1	572	1	chr3B.!!$F2	571
6	TraesCS3D01G276500	chr7D	58771590	58772154	564	True	771.000000	771	91.228000	4	572	1	chr7D.!!$R1	568
7	TraesCS3D01G276500	chr5D	76257057	76257609	552	False	769.000000	769	91.712000	1	555	1	chr5D.!!$F1	554
8	TraesCS3D01G276500	chr5B	84954949	84955500	551	False	767.000000	767	91.697000	1	554	1	chr5B.!!$F1	553
9	TraesCS3D01G276500	chr6B	566556798	566557390	592	True	721.000000	721	88.629000	2	596	1	chr6B.!!$R1	594
10	TraesCS3D01G276500	chr4A	618680529	618681099	570	True	721.000000	721	89.510000	6	574	1	chr4A.!!$R1	568
11	TraesCS3D01G276500	chr1B	614498325	614498908	583	True	721.000000	721	88.927000	1	587	1	chr1B.!!$R1	586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
594	603	0.036388	TCGCCTTGATCCGCTTTTCT	60.036	50.0	0.00	0.0	0.0	2.52	F
1670	2122	0.034896	GAGAGGTTTGACAAGCCGGA	59.965	55.0	14.59	0.0	0.0	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2401	2853	0.532862	CGCACAAGACAACACCCTCT	60.533	55.0	0.00	0.0	0.00	3.69	R
3157	3609	0.179124	TTCTGCGGCAAACCACAAAC	60.179	50.0	3.44	0.0	34.57	2.93	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
238	243	5.018539	ACAGTAAACACAACTACAGCAGA	57.981	39.130	0.00	0.00	0.00	4.26
328	333	2.125512	GCGAGACGACCAAGCCAT	60.126	61.111	0.00	0.00	0.00	4.40
377	385	2.494073	GACAACGAGATGGAGGAAGAGT	59.506	50.000	0.00	0.00	0.00	3.24
574	583	2.166346	TGGTTGGGGGCAGATGGAA	61.166	57.895	0.00	0.00	0.00	3.53
575	584	1.311059	GGTTGGGGGCAGATGGAAT	59.689	57.895	0.00	0.00	0.00	3.01
576	585	0.756815	GGTTGGGGGCAGATGGAATC	60.757	60.000	0.00	0.00	46.04	2.52
587	596	1.151668	GATGGAATCGCCTTGATCCG	58.848	55.000	0.00	0.00	35.84	4.18
588	597	0.886490	ATGGAATCGCCTTGATCCGC	60.886	55.000	0.00	0.00	35.84	5.54
589	598	1.227674	GGAATCGCCTTGATCCGCT	60.228	57.895	0.00	0.00	35.84	5.52
590	599	0.815615	GGAATCGCCTTGATCCGCTT	60.816	55.000	0.00	0.00	35.84	4.68
591	600	1.017387	GAATCGCCTTGATCCGCTTT	58.983	50.000	0.00	0.00	35.84	3.51
592	601	1.401905	GAATCGCCTTGATCCGCTTTT	59.598	47.619	0.00	0.00	35.84	2.27
593	602	1.017387	ATCGCCTTGATCCGCTTTTC	58.983	50.000	0.00	0.00	28.49	2.29
594	603	0.036388	TCGCCTTGATCCGCTTTTCT	60.036	50.000	0.00	0.00	0.00	2.52
595	604	0.375106	CGCCTTGATCCGCTTTTCTC	59.625	55.000	0.00	0.00	0.00	2.87
596	605	0.375106	GCCTTGATCCGCTTTTCTCG	59.625	55.000	0.00	0.00	0.00	4.04
613	622	2.809601	GGAGCGAGCGAGCGAAAA	60.810	61.111	1.41	0.00	43.00	2.29
614	623	2.392206	GAGCGAGCGAGCGAAAAC	59.608	61.111	1.41	0.00	43.00	2.43
615	624	3.072666	GAGCGAGCGAGCGAAAACC	62.073	63.158	1.41	0.00	43.00	3.27
616	625	4.485208	GCGAGCGAGCGAAAACCG	62.485	66.667	1.41	0.00	42.21	4.44
617	626	3.103911	CGAGCGAGCGAAAACCGT	61.104	61.111	0.00	0.00	41.15	4.83
618	627	2.654912	CGAGCGAGCGAAAACCGTT	61.655	57.895	0.00	0.00	41.15	4.44
619	628	1.568025	GAGCGAGCGAAAACCGTTT	59.432	52.632	0.00	0.00	41.15	3.60
620	629	0.041576	GAGCGAGCGAAAACCGTTTT	60.042	50.000	9.01	9.01	41.15	2.43
631	640	3.915437	AAACCGTTTTACATCTGGCTG	57.085	42.857	0.00	0.00	0.00	4.85
636	645	4.454504	ACCGTTTTACATCTGGCTGTTTAG	59.545	41.667	0.00	0.00	0.00	1.85
641	650	7.360861	CGTTTTACATCTGGCTGTTTAGAATCA	60.361	37.037	0.00	0.00	0.00	2.57
671	680	3.242739	CCGTTTGGCATGTCTAATACAGC	60.243	47.826	0.00	0.00	42.70	4.40
672	681	3.544048	CGTTTGGCATGTCTAATACAGCG	60.544	47.826	0.00	0.00	42.70	5.18
673	682	2.979814	TGGCATGTCTAATACAGCGT	57.020	45.000	0.00	0.00	42.70	5.07
679	688	5.223382	GCATGTCTAATACAGCGTAGTGAT	58.777	41.667	0.00	0.00	42.70	3.06
682	691	3.982058	GTCTAATACAGCGTAGTGATGGC	59.018	47.826	0.19	0.00	38.65	4.40
685	694	1.470051	TACAGCGTAGTGATGGCTCA	58.530	50.000	0.00	0.00	38.65	4.26
705	715	2.819477	CACCACTTTGAGGGGCAAA	58.181	52.632	0.00	0.00	44.74	3.68
787	858	0.904865	TGGGGGTGCTAGTGAGACAG	60.905	60.000	0.00	0.00	0.00	3.51
872	943	1.627864	AATGGTAAACTGTGGGGTGC	58.372	50.000	0.00	0.00	0.00	5.01
1255	1326	1.079405	GGTTCTGATTCGGTCGGCA	60.079	57.895	0.00	0.00	32.95	5.69
1386	1457	2.994578	GTTCTTCTCTAAAGGCGACCAC	59.005	50.000	0.00	0.00	0.00	4.16
1511	1582	3.235759	GGATAAGTTCCGGCGAAACGC	62.236	57.143	9.30	7.62	43.03	4.84
1631	2083	2.187946	GGATGTGAGGCGGTGGAG	59.812	66.667	0.00	0.00	0.00	3.86
1660	2112	0.602905	GGACCGTGGTGAGAGGTTTG	60.603	60.000	0.00	0.00	38.57	2.93
1661	2113	0.391597	GACCGTGGTGAGAGGTTTGA	59.608	55.000	0.00	0.00	38.57	2.69
1662	2114	0.106149	ACCGTGGTGAGAGGTTTGAC	59.894	55.000	0.00	0.00	33.96	3.18
1663	2115	0.105964	CCGTGGTGAGAGGTTTGACA	59.894	55.000	0.00	0.00	0.00	3.58
1664	2116	1.474320	CCGTGGTGAGAGGTTTGACAA	60.474	52.381	0.00	0.00	0.00	3.18
1666	2118	1.604278	GTGGTGAGAGGTTTGACAAGC	59.396	52.381	0.00	0.00	0.00	4.01
1667	2119	1.239347	GGTGAGAGGTTTGACAAGCC	58.761	55.000	12.86	12.86	0.00	4.35
1669	2121	0.250295	TGAGAGGTTTGACAAGCCGG	60.250	55.000	14.59	0.00	0.00	6.13
1670	2122	0.034896	GAGAGGTTTGACAAGCCGGA	59.965	55.000	14.59	0.00	0.00	5.14
1671	2123	0.693049	AGAGGTTTGACAAGCCGGAT	59.307	50.000	14.59	0.00	0.00	4.18
1672	2124	0.804989	GAGGTTTGACAAGCCGGATG	59.195	55.000	14.59	5.76	0.00	3.51
1674	2126	0.240945	GGTTTGACAAGCCGGATGTG	59.759	55.000	16.92	8.90	0.00	3.21
1981	2433	1.912043	AGGAAGACATGGAAGGAGGTG	59.088	52.381	0.00	0.00	0.00	4.00
2023	2475	0.480796	TGGTTGGGGAGGGGGTTTAT	60.481	55.000	0.00	0.00	0.00	1.40
2107	2559	4.202609	ACACAGGAAGGAATGGATTTGAGT	60.203	41.667	0.00	0.00	0.00	3.41
2323	2775	3.751246	CATGGTGGCAAGGCACCG	61.751	66.667	32.01	19.78	44.07	4.94
2401	2853	1.419762	TCAGCCTACTTCTTTGGTGCA	59.580	47.619	0.00	0.00	0.00	4.57
2506	2958	1.727335	GAGCTGCTTTCGTGTAGGAAC	59.273	52.381	2.53	0.00	0.00	3.62
2567	3019	1.342174	GAGTTCTTGGTGGTACCGTCA	59.658	52.381	7.57	5.11	42.58	4.35
2662	3114	1.463214	TCTGAGGCCCCTGGTTGAA	60.463	57.895	0.00	0.00	0.00	2.69
2665	3117	3.920093	GAGGCCCCTGGTTGAACGG	62.920	68.421	0.00	0.00	0.00	4.44
2778	3230	9.495572	GGAAGAAGGTGATAATTATTCAGGTAG	57.504	37.037	0.00	0.00	30.17	3.18
2941	3393	8.668653	TCCATGTTTCATCCATACCATAGTTAT	58.331	33.333	0.00	0.00	0.00	1.89
3000	3452	4.567959	ACTTTTGTTTCTGTTGCATGCTTC	59.432	37.500	20.33	12.11	0.00	3.86
3017	3469	3.005684	TGCTTCGAATTTGCTGGTTTGAT	59.994	39.130	0.00	0.00	0.00	2.57
3020	3472	5.287035	GCTTCGAATTTGCTGGTTTGATTAG	59.713	40.000	0.00	0.00	0.00	1.73
3154	3606	0.839946	ATGCCACAGCTAACCCTAGG	59.160	55.000	0.06	0.06	40.80	3.02
3157	3609	1.413077	GCCACAGCTAACCCTAGGTAG	59.587	57.143	8.29	5.03	34.05	3.18
3216	3668	4.239428	TGATGTATGGGCCATATGGATG	57.761	45.455	27.97	0.00	37.39	3.51
3244	3696	2.367241	TGTGGCAAGTCACAGTAGCTAA	59.633	45.455	2.94	0.00	42.05	3.09
3308	3760	0.594796	CACCTGAAAAACAGTGGCGC	60.595	55.000	0.00	0.00	44.40	6.53
3343	3795	1.693062	TGGCAAATTGTGTGCAGGAAT	59.307	42.857	3.19	0.00	44.07	3.01
3344	3796	2.070783	GGCAAATTGTGTGCAGGAATG	58.929	47.619	3.19	0.00	44.07	2.67
3385	3837	5.887035	TGTCAATTGCAGATACATGATTCCA	59.113	36.000	0.00	0.00	0.00	3.53
3570	4036	6.532657	GGTGAAATATTCTGCTTGATTGTTGG	59.467	38.462	0.00	0.00	0.00	3.77
3663	4129	6.294453	CCAATTGCAGTGTAATGTACCTTGAA	60.294	38.462	7.25	0.00	0.00	2.69
3670	4136	6.092670	CAGTGTAATGTACCTTGAACCATCAG	59.907	42.308	0.00	0.00	36.78	2.90
3719	4398	9.029243	CCGTATATGATTAGGTAGTACTAGTCG	57.971	40.741	1.87	0.00	33.75	4.18
3839	4518	0.107017	ACTTCCAGCTGTTGCAGTGT	60.107	50.000	13.81	0.00	42.74	3.55
3840	4519	0.309922	CTTCCAGCTGTTGCAGTGTG	59.690	55.000	13.81	0.00	42.74	3.82
3851	4530	3.146066	GTTGCAGTGTGGTATCCAGAAA	58.854	45.455	0.00	0.00	32.34	2.52
3852	4531	3.500448	TGCAGTGTGGTATCCAGAAAA	57.500	42.857	0.00	0.00	32.34	2.29
3856	4535	5.048083	TGCAGTGTGGTATCCAGAAAATTTC	60.048	40.000	0.00	0.00	32.34	2.17
3885	4564	9.832445	TGATTAGTCTGTTAATCCCAGTTTATC	57.168	33.333	10.11	0.00	38.63	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	0.177604	GTGGTGCTCTCCCAGATCTG	59.822	60.000	16.24	16.24	31.13	2.90
238	243	3.920196	GGGTGGTGGTCGTGTCGT	61.920	66.667	0.00	0.00	0.00	4.34
377	385	3.128349	GCGTCGGAATAATTTGCCTCTA	58.872	45.455	0.00	0.00	0.00	2.43
413	421	2.039216	TCCTTGAGGCGTTGTTTCCATA	59.961	45.455	0.00	0.00	34.44	2.74
511	519	3.003763	GTCCCTGCCTCCTCCGTT	61.004	66.667	0.00	0.00	0.00	4.44
574	583	1.017387	GAAAAGCGGATCAAGGCGAT	58.983	50.000	0.00	0.00	36.91	4.58
575	584	0.036388	AGAAAAGCGGATCAAGGCGA	60.036	50.000	0.00	0.00	0.00	5.54
576	585	0.375106	GAGAAAAGCGGATCAAGGCG	59.625	55.000	0.00	0.00	0.00	5.52
577	586	0.375106	CGAGAAAAGCGGATCAAGGC	59.625	55.000	0.00	0.00	0.00	4.35
596	605	2.809601	TTTTCGCTCGCTCGCTCC	60.810	61.111	0.00	0.00	0.00	4.70
597	606	2.392206	GTTTTCGCTCGCTCGCTC	59.608	61.111	0.00	0.00	0.00	5.03
598	607	3.112709	GGTTTTCGCTCGCTCGCT	61.113	61.111	0.00	0.00	0.00	4.93
599	608	4.485208	CGGTTTTCGCTCGCTCGC	62.485	66.667	0.00	0.00	0.00	5.03
600	609	2.154427	AAACGGTTTTCGCTCGCTCG	62.154	55.000	0.00	0.00	43.89	5.03
601	610	0.041576	AAAACGGTTTTCGCTCGCTC	60.042	50.000	12.86	0.00	43.89	5.03
602	611	1.070376	GTAAAACGGTTTTCGCTCGCT	60.070	47.619	21.09	0.00	43.89	4.93
603	612	1.311839	GTAAAACGGTTTTCGCTCGC	58.688	50.000	21.09	4.27	43.89	5.03
604	613	2.649140	TGTAAAACGGTTTTCGCTCG	57.351	45.000	21.09	0.00	43.89	5.03
605	614	4.148891	CAGATGTAAAACGGTTTTCGCTC	58.851	43.478	21.09	15.14	43.89	5.03
606	615	3.058501	CCAGATGTAAAACGGTTTTCGCT	60.059	43.478	21.09	11.77	43.89	4.93
607	616	3.231160	CCAGATGTAAAACGGTTTTCGC	58.769	45.455	21.09	15.49	43.89	4.70
608	617	3.058501	AGCCAGATGTAAAACGGTTTTCG	60.059	43.478	21.09	5.72	45.88	3.46
609	618	4.226761	CAGCCAGATGTAAAACGGTTTTC	58.773	43.478	21.09	13.50	34.19	2.29
610	619	3.634910	ACAGCCAGATGTAAAACGGTTTT	59.365	39.130	21.20	21.20	36.67	2.43
611	620	3.219281	ACAGCCAGATGTAAAACGGTTT	58.781	40.909	2.90	2.90	0.00	3.27
612	621	2.858745	ACAGCCAGATGTAAAACGGTT	58.141	42.857	0.00	0.00	0.00	4.44
613	622	2.561478	ACAGCCAGATGTAAAACGGT	57.439	45.000	0.00	0.00	0.00	4.83
614	623	3.915437	AAACAGCCAGATGTAAAACGG	57.085	42.857	0.00	0.00	31.70	4.44
615	624	5.856126	TCTAAACAGCCAGATGTAAAACG	57.144	39.130	0.00	0.00	31.70	3.60
616	625	7.816640	TGATTCTAAACAGCCAGATGTAAAAC	58.183	34.615	0.00	0.00	31.70	2.43
617	626	7.994425	TGATTCTAAACAGCCAGATGTAAAA	57.006	32.000	0.00	0.00	31.70	1.52
618	627	7.611467	ACATGATTCTAAACAGCCAGATGTAAA	59.389	33.333	0.00	0.00	31.70	2.01
619	628	7.112122	ACATGATTCTAAACAGCCAGATGTAA	58.888	34.615	0.00	0.00	31.70	2.41
620	629	6.653020	ACATGATTCTAAACAGCCAGATGTA	58.347	36.000	0.00	0.00	31.70	2.29
631	640	6.362283	CCAAACGGTTTGACATGATTCTAAAC	59.638	38.462	29.82	3.45	43.26	2.01
636	645	2.986479	GCCAAACGGTTTGACATGATTC	59.014	45.455	29.82	8.53	43.26	2.52
641	650	1.686052	ACATGCCAAACGGTTTGACAT	59.314	42.857	29.82	26.77	43.19	3.06
671	680	0.807667	GGTGCTGAGCCATCACTACG	60.808	60.000	0.23	0.00	32.06	3.51
672	681	0.250234	TGGTGCTGAGCCATCACTAC	59.750	55.000	0.23	0.00	32.06	2.73
673	682	0.250234	GTGGTGCTGAGCCATCACTA	59.750	55.000	0.23	0.00	42.24	2.74
679	688	0.535780	CTCAAAGTGGTGCTGAGCCA	60.536	55.000	0.23	0.00	30.91	4.75
682	691	0.607489	CCCCTCAAAGTGGTGCTGAG	60.607	60.000	0.00	0.00	37.03	3.35
685	694	2.116125	GCCCCTCAAAGTGGTGCT	59.884	61.111	0.00	0.00	0.00	4.40
759	830	1.006813	TAGCACCCCCACAAATCCAT	58.993	50.000	0.00	0.00	0.00	3.41
1205	1276	3.053842	AGTGGAGAACGAGACCCTATGTA	60.054	47.826	0.00	0.00	0.00	2.29
1386	1457	0.099613	ATGTCTCTACTCGCGCACTG	59.900	55.000	8.75	0.00	0.00	3.66
1511	1582	2.046314	ACCCTTCATCCGTTGCCG	60.046	61.111	0.00	0.00	0.00	5.69
1517	1588	2.186903	CACGGGACCCTTCATCCG	59.813	66.667	9.41	0.00	46.95	4.18
1541	1612	3.211045	TCCGGTTTTTCAAACCTCTCAG	58.789	45.455	14.88	1.24	38.15	3.35
1631	2083	2.328099	CCACGGTCCTCTTGCTTGC	61.328	63.158	0.00	0.00	0.00	4.01
1981	2433	2.124695	GGCACTGTCGATTCCCCC	60.125	66.667	0.00	0.00	0.00	5.40
2107	2559	4.593206	TCCTTCTTCTTCTTGTTGCTCCTA	59.407	41.667	0.00	0.00	0.00	2.94
2167	2619	6.766467	CCTCAATAACTTTAAGCCCGATAGTT	59.234	38.462	0.00	0.00	33.89	2.24
2323	2775	3.495806	CCTCATCCAAAGCTATCCAGACC	60.496	52.174	0.00	0.00	0.00	3.85
2401	2853	0.532862	CGCACAAGACAACACCCTCT	60.533	55.000	0.00	0.00	0.00	3.69
2506	2958	5.562506	ATGAAGACAGAAACTGCATCATG	57.437	39.130	0.00	0.00	34.37	3.07
2567	3019	5.362430	CAGAGAGAGGTATAGCTTTTGGAGT	59.638	44.000	5.80	0.00	0.00	3.85
2641	3093	3.810687	AACCAGGGGCCTCAGACCA	62.811	63.158	4.79	0.00	0.00	4.02
2662	3114	1.172180	CCAAATGTGTGCAGGACCGT	61.172	55.000	0.00	0.00	0.00	4.83
2665	3117	1.317613	TGACCAAATGTGTGCAGGAC	58.682	50.000	0.00	0.00	0.00	3.85
2778	3230	7.709947	TGCAAGGAATGATTTCATATCTTGAC	58.290	34.615	24.42	19.01	42.45	3.18
3000	3452	8.687824	AATTACTAATCAAACCAGCAAATTCG	57.312	30.769	0.00	0.00	0.00	3.34
3039	3491	2.099141	TCTCAAAGATGTTGCCCTCG	57.901	50.000	0.00	0.00	0.00	4.63
3154	3606	0.382515	TGCGGCAAACCACAAACTAC	59.617	50.000	0.00	0.00	34.57	2.73
3157	3609	0.179124	TTCTGCGGCAAACCACAAAC	60.179	50.000	3.44	0.00	34.57	2.93
3185	3637	6.446909	TGGCCCATACATCATAGACATTTA	57.553	37.500	0.00	0.00	0.00	1.40
3216	3668	3.119495	ACTGTGACTTGCCACACTTTTTC	60.119	43.478	0.00	0.00	41.63	2.29
3343	3795	1.774217	AGGTCCAGGGGCTGTTTCA	60.774	57.895	0.00	0.00	0.00	2.69
3344	3796	1.303643	CAGGTCCAGGGGCTGTTTC	60.304	63.158	0.00	0.00	0.00	2.78
3385	3837	8.765517	TGATATGATGGTGTCAATATATGCTCT	58.234	33.333	0.00	0.00	40.97	4.09
3522	3977	2.496871	CTGAGCAGAGAGTTCCAGTGAT	59.503	50.000	0.00	0.00	0.00	3.06
3663	4129	7.749666	ACCAACATATAAATAGCTCTGATGGT	58.250	34.615	0.00	0.00	35.67	3.55
3719	4398	6.020121	GCAATTGCATATGTGTTGTCTCAATC	60.020	38.462	25.36	0.00	41.59	2.67
3721	4400	5.162794	GCAATTGCATATGTGTTGTCTCAA	58.837	37.500	25.36	0.00	41.59	3.02
3839	4518	9.618890	CTAATCAGAGAAATTTTCTGGATACCA	57.381	33.333	16.17	7.39	41.83	3.25
3840	4519	9.620259	ACTAATCAGAGAAATTTTCTGGATACC	57.380	33.333	16.17	1.27	41.83	2.73
3851	4530	9.620259	GGGATTAACAGACTAATCAGAGAAATT	57.380	33.333	5.88	0.00	39.21	1.82
3852	4531	8.772250	TGGGATTAACAGACTAATCAGAGAAAT	58.228	33.333	5.88	0.00	39.21	2.17
3856	4535	7.118496	ACTGGGATTAACAGACTAATCAGAG	57.882	40.000	0.00	3.71	39.21	3.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.