Multiple sequence alignment - TraesCS3D01G275400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G275400 chr3D 100.000 7133 0 0 1 7133 381984041 381991173 0.000000e+00 13173.0
1 TraesCS3D01G275400 chr3D 86.036 666 71 14 1002 1658 43583499 43582847 0.000000e+00 695.0
2 TraesCS3D01G275400 chr3D 96.629 89 3 0 5033 5121 429306327 429306239 1.600000e-31 148.0
3 TraesCS3D01G275400 chr3D 95.402 87 4 0 5033 5119 157099357 157099443 9.650000e-29 139.0
4 TraesCS3D01G275400 chr3D 95.455 44 1 1 6664 6706 381990661 381990704 1.280000e-07 69.4
5 TraesCS3D01G275400 chr3D 95.455 44 1 1 6621 6664 381990704 381990746 1.280000e-07 69.4
6 TraesCS3D01G275400 chr3D 90.196 51 4 1 5825 5874 4197107 4197057 1.660000e-06 65.8
7 TraesCS3D01G275400 chr3D 86.000 50 7 0 5825 5874 289103649 289103698 4.000000e-03 54.7
8 TraesCS3D01G275400 chr3A 95.687 4243 130 19 819 5034 505215934 505220150 0.000000e+00 6772.0
9 TraesCS3D01G275400 chr3A 94.597 1092 36 10 5115 6200 505220150 505221224 0.000000e+00 1668.0
10 TraesCS3D01G275400 chr3A 94.933 375 17 2 6759 7133 505221768 505222140 2.870000e-163 586.0
11 TraesCS3D01G275400 chr3A 91.000 100 8 1 5033 5132 333321375 333321277 4.490000e-27 134.0
12 TraesCS3D01G275400 chr3A 83.607 122 12 5 614 734 743229439 743229325 2.720000e-19 108.0
13 TraesCS3D01G275400 chr3A 86.000 50 7 0 5825 5874 360822550 360822501 4.000000e-03 54.7
14 TraesCS3D01G275400 chr3B 94.567 3810 133 21 791 4569 497704316 497708082 0.000000e+00 5821.0
15 TraesCS3D01G275400 chr3B 94.236 1093 45 8 5115 6200 497708507 497709588 0.000000e+00 1653.0
16 TraesCS3D01G275400 chr3B 95.117 471 20 3 6664 7133 497710110 497710578 0.000000e+00 739.0
17 TraesCS3D01G275400 chr3B 97.018 436 12 1 4600 5034 497708072 497708507 0.000000e+00 732.0
18 TraesCS3D01G275400 chr3B 93.696 349 11 3 1 344 497703701 497704043 4.930000e-141 512.0
19 TraesCS3D01G275400 chr3B 88.603 272 21 6 6122 6392 497709584 497709846 8.930000e-84 322.0
20 TraesCS3D01G275400 chr3B 78.614 332 65 6 3230 3559 456983186 456983513 1.560000e-51 215.0
21 TraesCS3D01G275400 chr3B 90.728 151 9 2 6294 6443 497709842 497709988 5.640000e-46 196.0
22 TraesCS3D01G275400 chr3B 90.278 144 14 0 586 729 497704048 497704191 9.450000e-44 189.0
23 TraesCS3D01G275400 chr3B 96.703 91 3 0 715 805 497704207 497704297 1.240000e-32 152.0
24 TraesCS3D01G275400 chr3B 92.708 96 7 0 6568 6663 497710057 497710152 9.650000e-29 139.0
25 TraesCS3D01G275400 chr3B 90.291 103 9 1 5030 5132 312161295 312161396 4.490000e-27 134.0
26 TraesCS3D01G275400 chr1A 86.357 667 74 12 996 1658 504398613 504399266 0.000000e+00 712.0
27 TraesCS3D01G275400 chr1A 85.921 277 26 8 1002 1276 525143701 525143436 4.210000e-72 283.0
28 TraesCS3D01G275400 chr7A 86.371 653 72 12 1002 1650 655418094 655417455 0.000000e+00 697.0
29 TraesCS3D01G275400 chr7A 89.164 323 32 3 3236 3556 209131827 209131506 4.010000e-107 399.0
30 TraesCS3D01G275400 chr7A 89.130 46 5 0 5824 5869 12913691 12913736 2.780000e-04 58.4
31 TraesCS3D01G275400 chr4A 86.082 661 75 12 1002 1658 312732760 312732113 0.000000e+00 695.0
32 TraesCS3D01G275400 chr4A 92.683 41 3 0 5877 5917 137185708 137185668 7.730000e-05 60.2
33 TraesCS3D01G275400 chr5B 84.835 666 81 15 1002 1661 275020877 275020226 0.000000e+00 652.0
34 TraesCS3D01G275400 chr5B 96.512 86 3 0 5033 5118 364139503 364139418 7.460000e-30 143.0
35 TraesCS3D01G275400 chr6B 89.441 322 33 1 3234 3554 348089578 348089899 8.620000e-109 405.0
36 TraesCS3D01G275400 chr6B 88.930 271 29 1 3237 3507 126633812 126633543 4.120000e-87 333.0
37 TraesCS3D01G275400 chrUn 86.196 326 42 3 3234 3558 337678286 337677963 4.090000e-92 350.0
38 TraesCS3D01G275400 chrUn 85.890 326 43 3 3234 3558 384396593 384396270 1.910000e-90 344.0
39 TraesCS3D01G275400 chr6D 86.196 326 42 3 3234 3558 467145971 467145648 4.090000e-92 350.0
40 TraesCS3D01G275400 chr2D 83.686 331 44 6 3232 3556 2044808 2045134 3.230000e-78 303.0
41 TraesCS3D01G275400 chr1D 97.753 89 2 0 5030 5118 120537613 120537701 3.450000e-33 154.0
42 TraesCS3D01G275400 chr2A 96.703 91 2 1 5030 5120 79308231 79308142 4.460000e-32 150.0
43 TraesCS3D01G275400 chr2B 97.647 85 2 0 5034 5118 723392895 723392979 5.770000e-31 147.0
44 TraesCS3D01G275400 chr7B 95.506 89 4 0 5033 5121 103891526 103891438 7.460000e-30 143.0
45 TraesCS3D01G275400 chr7D 80.992 121 16 4 614 734 465169060 465168947 9.860000e-14 89.8
46 TraesCS3D01G275400 chr7D 92.857 42 2 1 5817 5857 120272626 120272667 7.730000e-05 60.2
47 TraesCS3D01G275400 chr4D 93.878 49 3 0 5819 5867 457521783 457521831 2.760000e-09 75.0
48 TraesCS3D01G275400 chr4B 88.235 51 4 2 5825 5874 173563461 173563412 7.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G275400 chr3D 381984041 381991173 7132 False 4437.266667 13173 96.970000 1 7133 3 chr3D.!!$F3 7132
1 TraesCS3D01G275400 chr3D 43582847 43583499 652 True 695.000000 695 86.036000 1002 1658 1 chr3D.!!$R2 656
2 TraesCS3D01G275400 chr3A 505215934 505222140 6206 False 3008.666667 6772 95.072333 819 7133 3 chr3A.!!$F1 6314
3 TraesCS3D01G275400 chr3B 497703701 497710578 6877 False 1045.500000 5821 93.365400 1 7133 10 chr3B.!!$F3 7132
4 TraesCS3D01G275400 chr1A 504398613 504399266 653 False 712.000000 712 86.357000 996 1658 1 chr1A.!!$F1 662
5 TraesCS3D01G275400 chr7A 655417455 655418094 639 True 697.000000 697 86.371000 1002 1650 1 chr7A.!!$R2 648
6 TraesCS3D01G275400 chr4A 312732113 312732760 647 True 695.000000 695 86.082000 1002 1658 1 chr4A.!!$R2 656
7 TraesCS3D01G275400 chr5B 275020226 275020877 651 True 652.000000 652 84.835000 1002 1661 1 chr5B.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 518 0.038526 CCCTCGTGTACTGCGAAGTT 60.039 55.000 0.00 0.0 37.93 2.66 F
1458 1540 0.034863 GTGGTATTCCCCTTTGCGGA 60.035 55.000 0.00 0.0 33.16 5.54 F
1566 1653 0.980754 TTAGATGCGCCTTCTCCCCA 60.981 55.000 12.67 0.0 0.00 4.96 F
1815 1902 2.093306 TAGTCCACTGAAATGTGCCG 57.907 50.000 0.00 0.0 36.68 5.69 F
2729 2819 1.472480 CCAACTTTAGGTTCATGCCCG 59.528 52.381 0.00 0.0 35.74 6.13 F
3547 3643 0.610232 AACATGGAGCACTGGGAAGC 60.610 55.000 0.00 0.0 0.00 3.86 F
5049 5171 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1599 0.937304 TCGCTGCAAGTGTGAGAAAC 59.063 50.000 0.00 0.0 46.69 2.78 R
2728 2818 0.300491 CCATCATTTACGTGTCGGCG 59.700 55.000 0.00 0.0 37.94 6.46 R
2729 2819 0.655733 CCCATCATTTACGTGTCGGC 59.344 55.000 0.00 0.0 0.00 5.54 R
3403 3499 1.135689 CGCAGACCTATGCAAAACACC 60.136 52.381 0.00 0.0 46.87 4.16 R
4374 4495 0.750249 GGGGCCAAAACGATAATGGG 59.250 55.000 4.39 0.0 34.71 4.00 R
5200 5327 0.183014 TACCTAGACCTCCTCTGCGG 59.817 60.000 0.00 0.0 0.00 5.69 R
6242 6447 1.082104 GTTTCAAACGAGCAGGCCG 60.082 57.895 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
258 259 9.059260 CCTTTTCAAAACATGGAATCAAAAGAT 57.941 29.630 16.76 0.00 33.37 2.40
344 350 5.205056 CCTAAGTAGGAGATCTCACAGGTT 58.795 45.833 23.85 12.16 46.63 3.50
346 352 3.283751 AGTAGGAGATCTCACAGGTTCG 58.716 50.000 23.85 0.00 0.00 3.95
348 354 2.808919 AGGAGATCTCACAGGTTCGAA 58.191 47.619 23.85 0.00 0.00 3.71
349 355 3.165875 AGGAGATCTCACAGGTTCGAAA 58.834 45.455 23.85 0.00 0.00 3.46
350 356 3.772025 AGGAGATCTCACAGGTTCGAAAT 59.228 43.478 23.85 0.00 0.00 2.17
351 357 4.116238 GGAGATCTCACAGGTTCGAAATC 58.884 47.826 23.85 0.00 0.00 2.17
352 358 4.116238 GAGATCTCACAGGTTCGAAATCC 58.884 47.826 18.11 0.00 0.00 3.01
353 359 3.772025 AGATCTCACAGGTTCGAAATCCT 59.228 43.478 0.00 0.00 33.96 3.24
360 366 3.599343 CAGGTTCGAAATCCTGTGATCA 58.401 45.455 21.17 0.00 44.19 2.92
361 367 4.194640 CAGGTTCGAAATCCTGTGATCAT 58.805 43.478 21.17 0.00 44.19 2.45
362 368 5.359756 CAGGTTCGAAATCCTGTGATCATA 58.640 41.667 21.17 0.00 44.19 2.15
363 369 5.994054 CAGGTTCGAAATCCTGTGATCATAT 59.006 40.000 21.17 0.00 44.19 1.78
364 370 6.484643 CAGGTTCGAAATCCTGTGATCATATT 59.515 38.462 21.17 0.00 44.19 1.28
365 371 7.657354 CAGGTTCGAAATCCTGTGATCATATTA 59.343 37.037 21.17 0.00 44.19 0.98
366 372 8.378565 AGGTTCGAAATCCTGTGATCATATTAT 58.621 33.333 6.53 0.00 32.29 1.28
367 373 9.003658 GGTTCGAAATCCTGTGATCATATTATT 57.996 33.333 0.00 0.00 0.00 1.40
376 382 9.725019 TCCTGTGATCATATTATTTATTTCGCT 57.275 29.630 0.00 0.00 0.00 4.93
395 401 8.729529 TTTCGCTATATTATTTCTCTCTCGTG 57.270 34.615 0.00 0.00 0.00 4.35
396 402 7.436430 TCGCTATATTATTTCTCTCTCGTGT 57.564 36.000 0.00 0.00 0.00 4.49
397 403 7.298854 TCGCTATATTATTTCTCTCTCGTGTG 58.701 38.462 0.00 0.00 0.00 3.82
398 404 7.041303 TCGCTATATTATTTCTCTCTCGTGTGT 60.041 37.037 0.00 0.00 0.00 3.72
399 405 8.228464 CGCTATATTATTTCTCTCTCGTGTGTA 58.772 37.037 0.00 0.00 0.00 2.90
400 406 9.332301 GCTATATTATTTCTCTCTCGTGTGTAC 57.668 37.037 0.00 0.00 0.00 2.90
403 409 2.991434 TTCTCTCTCGTGTGTACTGC 57.009 50.000 0.00 0.00 0.00 4.40
404 410 1.166129 TCTCTCTCGTGTGTACTGCC 58.834 55.000 0.00 0.00 0.00 4.85
405 411 0.881796 CTCTCTCGTGTGTACTGCCA 59.118 55.000 0.00 0.00 0.00 4.92
406 412 1.269723 CTCTCTCGTGTGTACTGCCAA 59.730 52.381 0.00 0.00 0.00 4.52
407 413 1.269723 TCTCTCGTGTGTACTGCCAAG 59.730 52.381 0.00 0.00 0.00 3.61
408 414 1.000163 CTCTCGTGTGTACTGCCAAGT 60.000 52.381 0.00 0.00 40.67 3.16
409 415 1.411246 TCTCGTGTGTACTGCCAAGTT 59.589 47.619 0.00 0.00 37.88 2.66
410 416 2.624364 TCTCGTGTGTACTGCCAAGTTA 59.376 45.455 0.00 0.00 37.88 2.24
411 417 3.257375 TCTCGTGTGTACTGCCAAGTTAT 59.743 43.478 0.00 0.00 37.88 1.89
412 418 3.994392 CTCGTGTGTACTGCCAAGTTATT 59.006 43.478 0.00 0.00 37.88 1.40
413 419 5.047872 TCTCGTGTGTACTGCCAAGTTATTA 60.048 40.000 0.00 0.00 37.88 0.98
414 420 5.726397 TCGTGTGTACTGCCAAGTTATTAT 58.274 37.500 0.00 0.00 37.88 1.28
415 421 6.167685 TCGTGTGTACTGCCAAGTTATTATT 58.832 36.000 0.00 0.00 37.88 1.40
416 422 6.651643 TCGTGTGTACTGCCAAGTTATTATTT 59.348 34.615 0.00 0.00 37.88 1.40
417 423 6.740905 CGTGTGTACTGCCAAGTTATTATTTG 59.259 38.462 0.00 0.00 37.88 2.32
418 424 7.572353 CGTGTGTACTGCCAAGTTATTATTTGT 60.572 37.037 0.00 0.00 37.88 2.83
419 425 8.079809 GTGTGTACTGCCAAGTTATTATTTGTT 58.920 33.333 0.00 0.00 37.88 2.83
420 426 8.293867 TGTGTACTGCCAAGTTATTATTTGTTC 58.706 33.333 0.00 0.00 37.88 3.18
421 427 8.293867 GTGTACTGCCAAGTTATTATTTGTTCA 58.706 33.333 0.00 0.00 37.88 3.18
422 428 9.019656 TGTACTGCCAAGTTATTATTTGTTCAT 57.980 29.630 0.00 0.00 37.88 2.57
423 429 9.855021 GTACTGCCAAGTTATTATTTGTTCATT 57.145 29.630 0.00 0.00 37.88 2.57
440 446 9.653287 TTTGTTCATTATATTTCTCTCTCGTGT 57.347 29.630 0.00 0.00 0.00 4.49
441 447 8.634475 TGTTCATTATATTTCTCTCTCGTGTG 57.366 34.615 0.00 0.00 0.00 3.82
442 448 7.222805 TGTTCATTATATTTCTCTCTCGTGTGC 59.777 37.037 0.00 0.00 0.00 4.57
443 449 7.043961 TCATTATATTTCTCTCTCGTGTGCT 57.956 36.000 0.00 0.00 0.00 4.40
444 450 6.920210 TCATTATATTTCTCTCTCGTGTGCTG 59.080 38.462 0.00 0.00 0.00 4.41
445 451 1.719600 ATTTCTCTCTCGTGTGCTGC 58.280 50.000 0.00 0.00 0.00 5.25
446 452 0.319900 TTTCTCTCTCGTGTGCTGCC 60.320 55.000 0.00 0.00 0.00 4.85
447 453 1.463553 TTCTCTCTCGTGTGCTGCCA 61.464 55.000 0.00 0.00 0.00 4.92
448 454 1.005748 CTCTCTCGTGTGCTGCCAA 60.006 57.895 0.00 0.00 0.00 4.52
449 455 1.005748 TCTCTCGTGTGCTGCCAAG 60.006 57.895 0.00 0.00 0.00 3.61
450 456 1.301244 CTCTCGTGTGCTGCCAAGT 60.301 57.895 0.00 0.00 0.00 3.16
451 457 0.882042 CTCTCGTGTGCTGCCAAGTT 60.882 55.000 0.00 0.00 0.00 2.66
452 458 0.391228 TCTCGTGTGCTGCCAAGTTA 59.609 50.000 0.00 0.00 0.00 2.24
453 459 1.001974 TCTCGTGTGCTGCCAAGTTAT 59.998 47.619 0.00 0.00 0.00 1.89
454 460 1.806542 CTCGTGTGCTGCCAAGTTATT 59.193 47.619 0.00 0.00 0.00 1.40
455 461 3.000041 CTCGTGTGCTGCCAAGTTATTA 59.000 45.455 0.00 0.00 0.00 0.98
456 462 3.605634 TCGTGTGCTGCCAAGTTATTAT 58.394 40.909 0.00 0.00 0.00 1.28
457 463 4.006989 TCGTGTGCTGCCAAGTTATTATT 58.993 39.130 0.00 0.00 0.00 1.40
458 464 4.457603 TCGTGTGCTGCCAAGTTATTATTT 59.542 37.500 0.00 0.00 0.00 1.40
459 465 4.793216 CGTGTGCTGCCAAGTTATTATTTC 59.207 41.667 0.00 0.00 0.00 2.17
460 466 5.391950 CGTGTGCTGCCAAGTTATTATTTCT 60.392 40.000 0.00 0.00 0.00 2.52
461 467 6.030228 GTGTGCTGCCAAGTTATTATTTCTC 58.970 40.000 0.00 0.00 0.00 2.87
462 468 5.945784 TGTGCTGCCAAGTTATTATTTCTCT 59.054 36.000 0.00 0.00 0.00 3.10
463 469 6.094048 TGTGCTGCCAAGTTATTATTTCTCTC 59.906 38.462 0.00 0.00 0.00 3.20
464 470 6.317391 GTGCTGCCAAGTTATTATTTCTCTCT 59.683 38.462 0.00 0.00 0.00 3.10
465 471 7.495934 GTGCTGCCAAGTTATTATTTCTCTCTA 59.504 37.037 0.00 0.00 0.00 2.43
466 472 7.495934 TGCTGCCAAGTTATTATTTCTCTCTAC 59.504 37.037 0.00 0.00 0.00 2.59
467 473 7.041712 GCTGCCAAGTTATTATTTCTCTCTACC 60.042 40.741 0.00 0.00 0.00 3.18
468 474 7.280356 TGCCAAGTTATTATTTCTCTCTACCC 58.720 38.462 0.00 0.00 0.00 3.69
469 475 7.092623 TGCCAAGTTATTATTTCTCTCTACCCA 60.093 37.037 0.00 0.00 0.00 4.51
470 476 7.226918 GCCAAGTTATTATTTCTCTCTACCCAC 59.773 40.741 0.00 0.00 0.00 4.61
471 477 8.265055 CCAAGTTATTATTTCTCTCTACCCACA 58.735 37.037 0.00 0.00 0.00 4.17
472 478 9.838339 CAAGTTATTATTTCTCTCTACCCACAT 57.162 33.333 0.00 0.00 0.00 3.21
481 487 9.838339 ATTTCTCTCTACCCACATAAACATAAG 57.162 33.333 0.00 0.00 0.00 1.73
482 488 7.973048 TCTCTCTACCCACATAAACATAAGT 57.027 36.000 0.00 0.00 0.00 2.24
483 489 8.375493 TCTCTCTACCCACATAAACATAAGTT 57.625 34.615 0.00 0.00 40.40 2.66
484 490 9.483489 TCTCTCTACCCACATAAACATAAGTTA 57.517 33.333 0.00 0.00 36.84 2.24
499 505 9.457436 AAACATAAGTTATTATTTGTCCCTCGT 57.543 29.630 0.00 0.00 36.84 4.18
500 506 8.433421 ACATAAGTTATTATTTGTCCCTCGTG 57.567 34.615 0.00 0.00 28.73 4.35
501 507 8.044908 ACATAAGTTATTATTTGTCCCTCGTGT 58.955 33.333 0.00 0.00 28.73 4.49
502 508 9.537192 CATAAGTTATTATTTGTCCCTCGTGTA 57.463 33.333 0.00 0.00 28.73 2.90
503 509 7.838771 AAGTTATTATTTGTCCCTCGTGTAC 57.161 36.000 0.00 0.00 0.00 2.90
504 510 7.179076 AGTTATTATTTGTCCCTCGTGTACT 57.821 36.000 0.00 0.00 0.00 2.73
505 511 7.039882 AGTTATTATTTGTCCCTCGTGTACTG 58.960 38.462 0.00 0.00 0.00 2.74
506 512 2.094762 ATTTGTCCCTCGTGTACTGC 57.905 50.000 0.00 0.00 0.00 4.40
507 513 0.319211 TTTGTCCCTCGTGTACTGCG 60.319 55.000 0.00 0.00 0.00 5.18
508 514 1.174078 TTGTCCCTCGTGTACTGCGA 61.174 55.000 11.37 11.37 36.85 5.10
509 515 1.174078 TGTCCCTCGTGTACTGCGAA 61.174 55.000 12.56 0.00 37.93 4.70
510 516 0.456312 GTCCCTCGTGTACTGCGAAG 60.456 60.000 12.56 7.87 37.93 3.79
511 517 0.892358 TCCCTCGTGTACTGCGAAGT 60.892 55.000 0.00 0.00 37.93 3.01
512 518 0.038526 CCCTCGTGTACTGCGAAGTT 60.039 55.000 0.00 0.00 37.93 2.66
513 519 1.060713 CCTCGTGTACTGCGAAGTTG 58.939 55.000 0.00 0.00 37.93 3.16
514 520 1.060713 CTCGTGTACTGCGAAGTTGG 58.939 55.000 0.00 0.00 37.93 3.77
515 521 0.319211 TCGTGTACTGCGAAGTTGGG 60.319 55.000 0.00 0.00 35.28 4.12
516 522 1.866925 GTGTACTGCGAAGTTGGGC 59.133 57.895 0.00 0.00 0.00 5.36
517 523 1.302192 TGTACTGCGAAGTTGGGCC 60.302 57.895 0.00 0.00 0.00 5.80
518 524 2.038837 GTACTGCGAAGTTGGGCCC 61.039 63.158 17.59 17.59 0.00 5.80
519 525 2.521451 TACTGCGAAGTTGGGCCCA 61.521 57.895 24.45 24.45 0.00 5.36
520 526 2.741486 TACTGCGAAGTTGGGCCCAC 62.741 60.000 28.70 20.08 0.00 4.61
521 527 4.196778 TGCGAAGTTGGGCCCACA 62.197 61.111 28.70 16.15 0.00 4.17
522 528 3.670377 GCGAAGTTGGGCCCACAC 61.670 66.667 28.70 24.68 0.00 3.82
523 529 2.113139 CGAAGTTGGGCCCACACT 59.887 61.111 28.70 26.50 0.00 3.55
524 530 1.528309 CGAAGTTGGGCCCACACTT 60.528 57.895 33.97 33.97 33.46 3.16
525 531 1.515521 CGAAGTTGGGCCCACACTTC 61.516 60.000 38.19 38.19 38.77 3.01
526 532 0.178990 GAAGTTGGGCCCACACTTCT 60.179 55.000 39.17 26.94 38.90 2.85
527 533 1.073284 GAAGTTGGGCCCACACTTCTA 59.927 52.381 39.17 22.88 38.90 2.10
528 534 0.400594 AGTTGGGCCCACACTTCTAC 59.599 55.000 28.70 18.89 0.00 2.59
529 535 0.400594 GTTGGGCCCACACTTCTACT 59.599 55.000 28.70 0.00 0.00 2.57
530 536 1.626825 GTTGGGCCCACACTTCTACTA 59.373 52.381 28.70 1.58 0.00 1.82
531 537 2.238898 GTTGGGCCCACACTTCTACTAT 59.761 50.000 28.70 0.00 0.00 2.12
532 538 3.408157 TGGGCCCACACTTCTACTATA 57.592 47.619 24.45 0.00 0.00 1.31
533 539 3.305720 TGGGCCCACACTTCTACTATAG 58.694 50.000 24.45 0.00 0.00 1.31
534 540 2.633481 GGGCCCACACTTCTACTATAGG 59.367 54.545 19.95 0.00 0.00 2.57
535 541 3.306613 GGCCCACACTTCTACTATAGGT 58.693 50.000 4.43 0.00 0.00 3.08
536 542 3.710165 GGCCCACACTTCTACTATAGGTT 59.290 47.826 4.43 0.00 0.00 3.50
537 543 4.443034 GGCCCACACTTCTACTATAGGTTG 60.443 50.000 4.43 0.00 0.00 3.77
538 544 4.404715 GCCCACACTTCTACTATAGGTTGA 59.595 45.833 4.43 0.00 0.00 3.18
539 545 5.070580 GCCCACACTTCTACTATAGGTTGAT 59.929 44.000 4.43 0.00 30.61 2.57
540 546 6.516718 CCCACACTTCTACTATAGGTTGATG 58.483 44.000 4.43 4.45 33.56 3.07
541 547 6.098409 CCCACACTTCTACTATAGGTTGATGT 59.902 42.308 4.43 5.00 38.07 3.06
544 550 5.986135 CACTTCTACTATAGGTTGATGTGGC 59.014 44.000 18.86 0.00 44.03 5.01
545 551 5.661312 ACTTCTACTATAGGTTGATGTGGCA 59.339 40.000 4.43 0.00 36.97 4.92
546 552 6.156256 ACTTCTACTATAGGTTGATGTGGCAA 59.844 38.462 4.43 0.00 36.97 4.52
547 553 6.747414 TCTACTATAGGTTGATGTGGCAAT 57.253 37.500 4.43 0.00 0.00 3.56
548 554 7.849322 TCTACTATAGGTTGATGTGGCAATA 57.151 36.000 4.43 0.00 0.00 1.90
549 555 7.667557 TCTACTATAGGTTGATGTGGCAATAC 58.332 38.462 4.43 0.00 0.00 1.89
550 556 6.500589 ACTATAGGTTGATGTGGCAATACT 57.499 37.500 4.43 0.00 0.00 2.12
551 557 6.525629 ACTATAGGTTGATGTGGCAATACTC 58.474 40.000 4.43 0.00 0.00 2.59
552 558 3.004752 AGGTTGATGTGGCAATACTCC 57.995 47.619 0.00 0.00 0.00 3.85
553 559 2.024414 GGTTGATGTGGCAATACTCCC 58.976 52.381 0.00 0.00 0.00 4.30
554 560 2.620367 GGTTGATGTGGCAATACTCCCA 60.620 50.000 0.00 0.00 0.00 4.37
555 561 3.088532 GTTGATGTGGCAATACTCCCAA 58.911 45.455 0.00 0.00 31.90 4.12
556 562 2.722094 TGATGTGGCAATACTCCCAAC 58.278 47.619 0.00 0.00 31.90 3.77
557 563 2.040947 TGATGTGGCAATACTCCCAACA 59.959 45.455 0.00 0.00 31.90 3.33
558 564 1.904287 TGTGGCAATACTCCCAACAC 58.096 50.000 0.00 0.00 31.90 3.32
559 565 1.423541 TGTGGCAATACTCCCAACACT 59.576 47.619 0.00 0.00 31.90 3.55
560 566 2.158534 TGTGGCAATACTCCCAACACTT 60.159 45.455 0.00 0.00 31.90 3.16
561 567 2.890945 GTGGCAATACTCCCAACACTTT 59.109 45.455 0.00 0.00 31.90 2.66
562 568 2.890311 TGGCAATACTCCCAACACTTTG 59.110 45.455 0.00 0.00 0.00 2.77
563 569 2.890945 GGCAATACTCCCAACACTTTGT 59.109 45.455 0.00 0.00 0.00 2.83
564 570 4.076394 GGCAATACTCCCAACACTTTGTA 58.924 43.478 0.00 0.00 0.00 2.41
565 571 4.705023 GGCAATACTCCCAACACTTTGTAT 59.295 41.667 0.00 0.00 0.00 2.29
566 572 5.883673 GGCAATACTCCCAACACTTTGTATA 59.116 40.000 0.00 0.00 0.00 1.47
567 573 6.183360 GGCAATACTCCCAACACTTTGTATAC 60.183 42.308 0.00 0.00 0.00 1.47
568 574 6.373216 GCAATACTCCCAACACTTTGTATACA 59.627 38.462 0.08 0.08 0.00 2.29
569 575 7.625606 GCAATACTCCCAACACTTTGTATACAC 60.626 40.741 4.68 0.00 0.00 2.90
570 576 4.312443 ACTCCCAACACTTTGTATACACG 58.688 43.478 4.68 2.43 0.00 4.49
571 577 3.068560 TCCCAACACTTTGTATACACGC 58.931 45.455 4.68 0.00 0.00 5.34
572 578 2.159761 CCCAACACTTTGTATACACGCG 60.160 50.000 3.53 3.53 0.00 6.01
573 579 2.477375 CCAACACTTTGTATACACGCGT 59.523 45.455 5.58 5.58 0.00 6.01
574 580 3.674281 CCAACACTTTGTATACACGCGTA 59.326 43.478 13.44 0.00 0.00 4.42
575 581 4.327898 CCAACACTTTGTATACACGCGTAT 59.672 41.667 13.44 1.77 41.34 3.06
576 582 5.245105 CAACACTTTGTATACACGCGTATG 58.755 41.667 13.44 2.47 38.79 2.39
577 583 4.487948 ACACTTTGTATACACGCGTATGT 58.512 39.130 13.44 9.92 38.79 2.29
578 584 5.639757 ACACTTTGTATACACGCGTATGTA 58.360 37.500 13.44 12.19 38.79 2.29
579 585 5.740569 ACACTTTGTATACACGCGTATGTAG 59.259 40.000 13.44 0.50 38.79 2.74
580 586 5.172591 CACTTTGTATACACGCGTATGTAGG 59.827 44.000 13.44 0.00 38.79 3.18
581 587 3.272439 TGTATACACGCGTATGTAGGC 57.728 47.619 13.44 8.72 38.79 3.93
582 588 2.617774 TGTATACACGCGTATGTAGGCA 59.382 45.455 13.44 11.15 38.79 4.75
583 589 2.417339 ATACACGCGTATGTAGGCAG 57.583 50.000 13.44 0.00 38.43 4.85
584 590 1.097232 TACACGCGTATGTAGGCAGT 58.903 50.000 13.44 4.66 36.94 4.40
599 605 3.021695 AGGCAGTAGCGTATCTGTTACA 58.978 45.455 0.00 0.00 43.41 2.41
606 612 6.088217 CAGTAGCGTATCTGTTACATATGCAC 59.912 42.308 11.30 0.42 40.05 4.57
607 613 4.944048 AGCGTATCTGTTACATATGCACA 58.056 39.130 11.30 5.42 40.05 4.57
608 614 4.745125 AGCGTATCTGTTACATATGCACAC 59.255 41.667 11.30 0.00 40.05 3.82
690 696 1.559682 ACAAGCCATGTAAGGACCGAT 59.440 47.619 0.00 0.00 41.63 4.18
713 719 8.390354 CGATATGACAAACTGAAAAGATAGCAA 58.610 33.333 0.00 0.00 0.00 3.91
741 777 7.930325 ACATCTATGAGTTTGACACATATGAGG 59.070 37.037 10.38 3.64 32.67 3.86
789 825 3.758023 CAGGATGATTGTGTTACAAGCCA 59.242 43.478 7.39 5.14 43.28 4.75
868 938 8.718102 TTTCTGAAAAGTATAATCGAGAAGGG 57.282 34.615 0.00 0.00 0.00 3.95
1455 1537 6.183360 GGTTAAATAGTGGTATTCCCCTTTGC 60.183 42.308 0.00 0.00 0.00 3.68
1458 1540 0.034863 GTGGTATTCCCCTTTGCGGA 60.035 55.000 0.00 0.00 33.16 5.54
1515 1599 9.973450 ACTAAGTAGTTTATATGATGCTCACAG 57.027 33.333 0.00 0.00 31.13 3.66
1545 1631 2.093500 ACTTGCAGCGATTCCACTGATA 60.093 45.455 5.72 0.00 35.90 2.15
1566 1653 0.980754 TTAGATGCGCCTTCTCCCCA 60.981 55.000 12.67 0.00 0.00 4.96
1723 1810 2.743636 TCTCACTGAAATCACGGGAC 57.256 50.000 0.00 0.00 0.00 4.46
1753 1840 3.767131 TCTACGATGAATTGACCTGTCCA 59.233 43.478 0.00 0.00 0.00 4.02
1812 1899 4.260375 GCGCTATTAGTCCACTGAAATGTG 60.260 45.833 0.00 0.00 37.66 3.21
1815 1902 2.093306 TAGTCCACTGAAATGTGCCG 57.907 50.000 0.00 0.00 36.68 5.69
1833 1920 6.345298 TGTGCCGATTCTCTGATTAATTGTA 58.655 36.000 0.00 0.00 0.00 2.41
1834 1921 6.257849 TGTGCCGATTCTCTGATTAATTGTAC 59.742 38.462 0.00 0.00 0.00 2.90
2192 2280 8.643324 ACTCTTCATTCTAATATACCAGGACAC 58.357 37.037 0.00 0.00 0.00 3.67
2239 2327 7.919091 TCTGACTACACCGTCAATACATATTTC 59.081 37.037 0.00 0.00 42.80 2.17
2352 2442 6.639590 ATTCCATGGAAATGAAATTGGGAA 57.360 33.333 30.28 3.18 36.10 3.97
2726 2816 4.762251 AGTTCTCCAACTTTAGGTTCATGC 59.238 41.667 0.00 0.00 40.16 4.06
2728 2818 2.755103 CTCCAACTTTAGGTTCATGCCC 59.245 50.000 0.00 0.00 35.74 5.36
2729 2819 1.472480 CCAACTTTAGGTTCATGCCCG 59.528 52.381 0.00 0.00 35.74 6.13
2821 2911 6.627087 TTCCACAGATCCTTTCAGTCTTAT 57.373 37.500 0.00 0.00 0.00 1.73
3103 3197 4.000325 GTGCACATGGTATACACTTGTCA 59.000 43.478 13.17 6.75 0.00 3.58
3117 3211 2.287188 ACTTGTCAAGTTGATGCTTGCG 60.287 45.455 12.62 0.00 43.92 4.85
3150 3244 3.264193 TGGAGCAACCTGTCACTATCATT 59.736 43.478 1.91 0.00 39.86 2.57
3246 3342 5.937111 TGTTTGTATATTAGGCCTCTTCCC 58.063 41.667 9.68 0.00 0.00 3.97
3358 3454 7.015195 TGCTAAGCTTCCTTCCTTTAATTGTTT 59.985 33.333 0.00 0.00 32.47 2.83
3381 3477 7.759489 TTAACAACTAAACTCTTCCATGCAT 57.241 32.000 0.00 0.00 0.00 3.96
3403 3499 6.753744 GCATAGGGCAAACTTCTTTCATTTAG 59.246 38.462 0.00 0.00 43.97 1.85
3420 3516 6.245408 TCATTTAGGTGTTTTGCATAGGTCT 58.755 36.000 0.00 0.00 0.00 3.85
3547 3643 0.610232 AACATGGAGCACTGGGAAGC 60.610 55.000 0.00 0.00 0.00 3.86
3608 3704 4.202151 CCCAAACTTTCAAGGAAGACAAGG 60.202 45.833 0.00 0.00 0.00 3.61
3897 4009 1.202940 GGTGCAACTTCCTTCCTTCCT 60.203 52.381 0.00 0.00 36.74 3.36
3898 4010 2.039879 GGTGCAACTTCCTTCCTTCCTA 59.960 50.000 0.00 0.00 36.74 2.94
3899 4011 3.497942 GGTGCAACTTCCTTCCTTCCTAA 60.498 47.826 0.00 0.00 36.74 2.69
3900 4012 3.502595 GTGCAACTTCCTTCCTTCCTAAC 59.497 47.826 0.00 0.00 0.00 2.34
3901 4013 3.394606 TGCAACTTCCTTCCTTCCTAACT 59.605 43.478 0.00 0.00 0.00 2.24
3948 4069 3.582998 TGGGGTGAGATCCAAATCATC 57.417 47.619 0.00 0.00 34.07 2.92
4110 4231 9.504708 GATCTTGATTTGGATTCTCTGTCATAT 57.495 33.333 0.00 0.00 0.00 1.78
4256 4377 5.957771 TTAAGTCAGCCAGTCAAGGATAT 57.042 39.130 0.00 0.00 0.00 1.63
4291 4412 4.740268 TGATGATGATCTTTGCTTTGCAC 58.260 39.130 0.00 0.00 38.71 4.57
4309 4430 2.749800 GCACCCCCTGAATCCTTATCAC 60.750 54.545 0.00 0.00 0.00 3.06
4316 4437 4.080356 CCCTGAATCCTTATCACCAGTGAA 60.080 45.833 4.31 0.00 43.58 3.18
4318 4439 5.945784 CCTGAATCCTTATCACCAGTGAAAA 59.054 40.000 4.31 0.00 43.58 2.29
4374 4495 5.221303 TGCTGCTTATAATTCAAAGATGGCC 60.221 40.000 0.00 0.00 0.00 5.36
4383 4504 2.862541 TCAAAGATGGCCCCATTATCG 58.137 47.619 0.00 0.00 36.70 2.92
4394 4515 1.479709 CCATTATCGTTTTGGCCCCA 58.520 50.000 0.00 0.00 0.00 4.96
4461 4582 4.495422 CTGCAGGTACGAGTTATTTCACT 58.505 43.478 5.57 0.00 0.00 3.41
4494 4615 3.146066 GTCATGTAGCAAACCTTGTCCA 58.854 45.455 0.00 0.00 0.00 4.02
4749 4870 2.416747 TGAGACAGGAATTGCTTGACG 58.583 47.619 0.00 0.00 0.00 4.35
4778 4899 2.078849 TATCATATCGGTTGCAGCGG 57.921 50.000 1.47 1.47 39.89 5.52
4814 4935 0.460311 AGGCCTTCAATCTCGTACGG 59.540 55.000 16.52 6.42 0.00 4.02
4905 5026 3.074094 AGGTTCTTTTCCCACTTCTACCC 59.926 47.826 0.00 0.00 0.00 3.69
5034 5156 2.069273 CAGTTGCAGCCACAGTACTAC 58.931 52.381 0.00 0.00 0.00 2.73
5035 5157 1.971357 AGTTGCAGCCACAGTACTACT 59.029 47.619 0.00 0.00 0.00 2.57
5036 5158 2.028930 AGTTGCAGCCACAGTACTACTC 60.029 50.000 0.00 0.00 0.00 2.59
5037 5159 0.895530 TGCAGCCACAGTACTACTCC 59.104 55.000 0.00 0.00 0.00 3.85
5038 5160 0.175989 GCAGCCACAGTACTACTCCC 59.824 60.000 0.00 0.00 0.00 4.30
5039 5161 1.853963 CAGCCACAGTACTACTCCCT 58.146 55.000 0.00 0.00 0.00 4.20
5040 5162 1.751924 CAGCCACAGTACTACTCCCTC 59.248 57.143 0.00 0.00 0.00 4.30
5041 5163 1.112950 GCCACAGTACTACTCCCTCC 58.887 60.000 0.00 0.00 0.00 4.30
5042 5164 1.390565 CCACAGTACTACTCCCTCCG 58.609 60.000 0.00 0.00 0.00 4.63
5043 5165 1.340795 CCACAGTACTACTCCCTCCGT 60.341 57.143 0.00 0.00 0.00 4.69
5044 5166 2.015587 CACAGTACTACTCCCTCCGTC 58.984 57.143 0.00 0.00 0.00 4.79
5045 5167 1.064832 ACAGTACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
5046 5168 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
5047 5169 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
5048 5170 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5049 5171 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5050 5172 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
5051 5173 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
5052 5174 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5053 5175 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5054 5176 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5055 5177 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5056 5178 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5057 5179 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5058 5180 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5059 5181 2.671396 CTCCGTCCCAAAATAAGTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
5060 5182 2.037511 TCCGTCCCAAAATAAGTGTCGT 59.962 45.455 0.00 0.00 0.00 4.34
5061 5183 2.809696 CCGTCCCAAAATAAGTGTCGTT 59.190 45.455 0.00 0.00 0.00 3.85
5062 5184 3.364565 CCGTCCCAAAATAAGTGTCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
5063 5185 3.495377 CGTCCCAAAATAAGTGTCGTTGA 59.505 43.478 0.00 0.00 0.00 3.18
5064 5186 4.153475 CGTCCCAAAATAAGTGTCGTTGAT 59.847 41.667 0.00 0.00 0.00 2.57
5065 5187 5.334569 CGTCCCAAAATAAGTGTCGTTGATT 60.335 40.000 0.00 0.00 0.00 2.57
5066 5188 6.443792 GTCCCAAAATAAGTGTCGTTGATTT 58.556 36.000 0.00 0.00 0.00 2.17
5067 5189 7.571613 CGTCCCAAAATAAGTGTCGTTGATTTA 60.572 37.037 0.00 0.00 0.00 1.40
5068 5190 7.749126 GTCCCAAAATAAGTGTCGTTGATTTAG 59.251 37.037 0.00 0.00 0.00 1.85
5069 5191 7.446013 TCCCAAAATAAGTGTCGTTGATTTAGT 59.554 33.333 0.00 0.00 0.00 2.24
5070 5192 8.723311 CCCAAAATAAGTGTCGTTGATTTAGTA 58.277 33.333 0.00 0.00 0.00 1.82
5071 5193 9.537848 CCAAAATAAGTGTCGTTGATTTAGTAC 57.462 33.333 0.00 0.00 0.00 2.73
5075 5197 9.485206 AATAAGTGTCGTTGATTTAGTACAACT 57.515 29.630 0.00 0.00 42.53 3.16
5076 5198 7.781548 AAGTGTCGTTGATTTAGTACAACTT 57.218 32.000 0.00 0.00 42.53 2.66
5077 5199 7.781548 AGTGTCGTTGATTTAGTACAACTTT 57.218 32.000 0.00 0.00 42.53 2.66
5078 5200 7.627340 AGTGTCGTTGATTTAGTACAACTTTG 58.373 34.615 0.00 0.00 42.53 2.77
5079 5201 7.279313 AGTGTCGTTGATTTAGTACAACTTTGT 59.721 33.333 0.00 0.00 42.53 2.83
5080 5202 8.542132 GTGTCGTTGATTTAGTACAACTTTGTA 58.458 33.333 0.00 0.00 42.53 2.41
5093 5215 6.224420 ACAACTTTGTACTAAATCAGCGAC 57.776 37.500 0.00 0.00 40.16 5.19
5094 5216 5.756347 ACAACTTTGTACTAAATCAGCGACA 59.244 36.000 0.00 0.00 40.16 4.35
5095 5217 5.840940 ACTTTGTACTAAATCAGCGACAC 57.159 39.130 0.00 0.00 0.00 3.67
5096 5218 5.539048 ACTTTGTACTAAATCAGCGACACT 58.461 37.500 0.00 0.00 0.00 3.55
5097 5219 5.989777 ACTTTGTACTAAATCAGCGACACTT 59.010 36.000 0.00 0.00 0.00 3.16
5098 5220 7.149973 ACTTTGTACTAAATCAGCGACACTTA 58.850 34.615 0.00 0.00 0.00 2.24
5099 5221 7.817962 ACTTTGTACTAAATCAGCGACACTTAT 59.182 33.333 0.00 0.00 0.00 1.73
5100 5222 8.542497 TTTGTACTAAATCAGCGACACTTATT 57.458 30.769 0.00 0.00 0.00 1.40
5101 5223 8.542497 TTGTACTAAATCAGCGACACTTATTT 57.458 30.769 0.00 0.00 36.43 1.40
5102 5224 8.542497 TGTACTAAATCAGCGACACTTATTTT 57.458 30.769 0.00 0.00 34.69 1.82
5103 5225 8.440059 TGTACTAAATCAGCGACACTTATTTTG 58.560 33.333 0.00 0.00 34.69 2.44
5104 5226 6.842163 ACTAAATCAGCGACACTTATTTTGG 58.158 36.000 0.00 0.00 34.69 3.28
5105 5227 4.701956 AATCAGCGACACTTATTTTGGG 57.298 40.909 0.00 0.00 0.00 4.12
5106 5228 3.410631 TCAGCGACACTTATTTTGGGA 57.589 42.857 0.00 0.00 0.00 4.37
5107 5229 3.071479 TCAGCGACACTTATTTTGGGAC 58.929 45.455 0.00 0.00 0.00 4.46
5108 5230 2.811431 CAGCGACACTTATTTTGGGACA 59.189 45.455 0.00 0.00 0.00 4.02
5109 5231 3.074412 AGCGACACTTATTTTGGGACAG 58.926 45.455 0.00 0.00 42.39 3.51
5110 5232 3.071479 GCGACACTTATTTTGGGACAGA 58.929 45.455 0.00 0.00 42.39 3.41
5111 5233 3.125316 GCGACACTTATTTTGGGACAGAG 59.875 47.826 0.00 0.00 42.39 3.35
5112 5234 3.684788 CGACACTTATTTTGGGACAGAGG 59.315 47.826 0.00 0.00 42.39 3.69
5113 5235 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
5114 5236 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
5118 5240 5.045797 ACTTATTTTGGGACAGAGGGAGTAC 60.046 44.000 0.00 0.00 42.39 2.73
5124 5246 2.258109 GGACAGAGGGAGTACTTGGTT 58.742 52.381 0.00 0.00 0.00 3.67
5158 5285 7.795887 ATGCCACAGCTGTGACATCAAATTG 62.796 44.000 41.50 23.92 44.01 2.32
5200 5327 3.882288 ACAACATTGCCACCAAAATTTCC 59.118 39.130 0.00 0.00 34.05 3.13
5217 5344 1.830408 CCCGCAGAGGAGGTCTAGG 60.830 68.421 0.00 0.00 45.00 3.02
5224 5351 3.770388 GCAGAGGAGGTCTAGGTAAAACT 59.230 47.826 0.00 0.00 32.51 2.66
5255 5382 8.314333 GCAGTTTAAAAAGTTCTGCATTTTTG 57.686 30.769 17.99 4.04 46.95 2.44
5284 5411 0.884704 TTCAGTGCTTCAGTTCGCCC 60.885 55.000 0.00 0.00 0.00 6.13
5349 5477 7.397761 ACCTCTGAATAGCTAAAACTCACTAGT 59.602 37.037 0.00 0.00 37.65 2.57
5410 5538 4.770795 GGTGATTTACCTACTGCAGATGT 58.229 43.478 23.35 15.84 46.51 3.06
5505 5634 6.089249 AGGCACAACTAAATTTGAAAGAGG 57.911 37.500 0.00 0.00 0.00 3.69
5799 5928 7.231317 TCAGTTTCATAGCTTGAACTGGAAAAT 59.769 33.333 20.95 7.79 43.99 1.82
5815 5946 0.687354 AAATGGAGCGACCTCTGTGT 59.313 50.000 4.77 0.00 38.21 3.72
5816 5947 0.036952 AATGGAGCGACCTCTGTGTG 60.037 55.000 4.77 0.00 38.21 3.82
5817 5948 0.900182 ATGGAGCGACCTCTGTGTGA 60.900 55.000 4.77 0.00 38.21 3.58
5818 5949 1.112916 TGGAGCGACCTCTGTGTGAA 61.113 55.000 4.77 0.00 38.21 3.18
5819 5950 0.247736 GGAGCGACCTCTGTGTGAAT 59.752 55.000 0.00 0.00 38.21 2.57
5821 5952 1.996191 GAGCGACCTCTGTGTGAATTC 59.004 52.381 0.00 0.00 35.16 2.17
5822 5953 1.079503 GCGACCTCTGTGTGAATTCC 58.920 55.000 2.27 0.00 0.00 3.01
5823 5954 1.608025 GCGACCTCTGTGTGAATTCCA 60.608 52.381 2.27 0.00 0.00 3.53
5856 5987 6.403200 CCGTCCCAAAATAAGTGTCATAGTTG 60.403 42.308 0.00 0.00 0.00 3.16
5893 6024 6.016943 TGGACTTATTTAAACTGAAACCACGG 60.017 38.462 0.00 0.00 0.00 4.94
5906 6037 1.253100 ACCACGGCACTTATTTTGGG 58.747 50.000 0.00 0.00 0.00 4.12
5917 6048 3.197983 ACTTATTTTGGGACGGAGAGAGG 59.802 47.826 0.00 0.00 0.00 3.69
5942 6073 8.496751 GGACTTCTGTAATTGTACACTCTTTTC 58.503 37.037 0.00 0.00 35.23 2.29
5948 6079 6.757478 TGTAATTGTACACTCTTTTCGTGACA 59.243 34.615 0.00 0.00 35.23 3.58
5955 6086 3.243877 CACTCTTTTCGTGACACTGACAG 59.756 47.826 3.68 0.00 34.35 3.51
6177 6382 4.680172 CGTGATTCTCCTCATCTTTCAGCT 60.680 45.833 0.00 0.00 0.00 4.24
6213 6418 0.973632 TTCGCCTTCCTAGAACTGCA 59.026 50.000 0.00 0.00 0.00 4.41
6236 6441 0.389025 CAAAGGGTCCCTTGTGCAAC 59.611 55.000 24.50 0.00 43.92 4.17
6258 6463 1.525077 AACGGCCTGCTCGTTTGAA 60.525 52.632 0.00 0.00 46.85 2.69
6268 6473 0.655733 CTCGTTTGAAACCACGCTGT 59.344 50.000 2.00 0.00 36.32 4.40
6323 6615 4.985409 ACTCAAGATCGACTTTGTTCAGTC 59.015 41.667 9.71 0.00 40.02 3.51
6350 6642 2.876091 CTGAATGCTGAATGTGGCTTG 58.124 47.619 0.00 0.00 0.00 4.01
6370 6662 6.481644 GGCTTGACGATTTCATCTAGAATTCT 59.518 38.462 13.56 13.56 35.48 2.40
6379 6671 8.810652 ATTTCATCTAGAATTCTAACTCGAGC 57.189 34.615 13.61 0.00 35.83 5.03
6402 6694 3.512329 TCGACTTTATTCAGCTGGGTACA 59.488 43.478 15.13 0.00 0.00 2.90
6404 6696 5.361571 TCGACTTTATTCAGCTGGGTACATA 59.638 40.000 15.13 0.52 0.00 2.29
6410 6702 1.409064 TCAGCTGGGTACATAGCTTCG 59.591 52.381 15.13 9.84 45.64 3.79
6449 6741 6.481976 TGTATGTTGGTGTAGTTGTCTTTCAG 59.518 38.462 0.00 0.00 0.00 3.02
6450 6742 4.839121 TGTTGGTGTAGTTGTCTTTCAGT 58.161 39.130 0.00 0.00 0.00 3.41
6456 6748 6.033966 GGTGTAGTTGTCTTTCAGTTTTTGG 58.966 40.000 0.00 0.00 0.00 3.28
6472 6764 1.777941 TTGGGCCCAACGTAAAAAGT 58.222 45.000 34.07 0.00 0.00 2.66
6508 6802 1.649321 TGATCAGCAGACAGTTCCCT 58.351 50.000 0.00 0.00 0.00 4.20
6524 6818 7.889589 CAGTTCCCTGTAAAATGGAAAATTC 57.110 36.000 0.00 0.00 39.72 2.17
6525 6819 7.441017 CAGTTCCCTGTAAAATGGAAAATTCA 58.559 34.615 0.00 0.00 39.72 2.57
6530 6827 8.259411 TCCCTGTAAAATGGAAAATTCATCATG 58.741 33.333 0.00 0.00 0.00 3.07
6589 6886 0.870393 ACAACTGAACATGCTCGCAG 59.130 50.000 0.00 0.00 34.65 5.18
6610 6907 6.539324 GCAGCTTTATTACACGATTACACAA 58.461 36.000 0.00 0.00 0.00 3.33
6624 6921 1.762708 ACACAAACCTGAACCCTGTG 58.237 50.000 0.00 0.00 42.43 3.66
6671 6974 9.851686 ATTCATTTATACATGATACTGTGGTGT 57.148 29.630 0.00 0.00 33.07 4.16
6672 6975 9.679661 TTCATTTATACATGATACTGTGGTGTT 57.320 29.630 0.00 0.00 33.07 3.32
6673 6976 9.108284 TCATTTATACATGATACTGTGGTGTTG 57.892 33.333 0.00 0.00 0.00 3.33
6674 6977 7.857734 TTTATACATGATACTGTGGTGTTGG 57.142 36.000 0.00 0.00 0.00 3.77
6675 6978 3.788227 ACATGATACTGTGGTGTTGGT 57.212 42.857 0.00 0.00 0.00 3.67
6676 6979 3.674997 ACATGATACTGTGGTGTTGGTC 58.325 45.455 0.00 0.00 0.00 4.02
6677 6980 3.327757 ACATGATACTGTGGTGTTGGTCT 59.672 43.478 0.00 0.00 0.00 3.85
6678 6981 3.401033 TGATACTGTGGTGTTGGTCTG 57.599 47.619 0.00 0.00 0.00 3.51
6679 6982 2.076863 GATACTGTGGTGTTGGTCTGC 58.923 52.381 0.00 0.00 0.00 4.26
6680 6983 0.107831 TACTGTGGTGTTGGTCTGCC 59.892 55.000 0.00 0.00 0.00 4.85
6681 6984 1.152984 CTGTGGTGTTGGTCTGCCA 60.153 57.895 0.00 0.00 44.38 4.92
6682 6985 0.538057 CTGTGGTGTTGGTCTGCCAT 60.538 55.000 0.00 0.00 45.56 4.40
6683 6986 0.106268 TGTGGTGTTGGTCTGCCATT 60.106 50.000 0.00 0.00 45.56 3.16
6684 6987 1.143889 TGTGGTGTTGGTCTGCCATTA 59.856 47.619 0.00 0.00 45.56 1.90
6685 6988 1.539827 GTGGTGTTGGTCTGCCATTAC 59.460 52.381 0.00 0.00 45.56 1.89
6686 6989 1.143889 TGGTGTTGGTCTGCCATTACA 59.856 47.619 0.00 0.00 45.56 2.41
6687 6990 2.235016 GGTGTTGGTCTGCCATTACAA 58.765 47.619 0.00 0.00 45.56 2.41
6688 6991 2.825532 GGTGTTGGTCTGCCATTACAAT 59.174 45.455 0.00 0.00 45.56 2.71
6689 6992 3.258123 GGTGTTGGTCTGCCATTACAATT 59.742 43.478 0.00 0.00 45.56 2.32
6690 6993 4.485163 GTGTTGGTCTGCCATTACAATTC 58.515 43.478 0.00 0.00 45.56 2.17
6691 6994 4.022416 GTGTTGGTCTGCCATTACAATTCA 60.022 41.667 0.00 0.00 45.56 2.57
6692 6995 4.771577 TGTTGGTCTGCCATTACAATTCAT 59.228 37.500 0.00 0.00 45.56 2.57
6693 6996 5.245751 TGTTGGTCTGCCATTACAATTCATT 59.754 36.000 0.00 0.00 45.56 2.57
6694 6997 5.999205 TGGTCTGCCATTACAATTCATTT 57.001 34.783 0.00 0.00 40.46 2.32
6695 6998 7.039434 TGTTGGTCTGCCATTACAATTCATTTA 60.039 33.333 0.00 0.00 45.56 1.40
6696 6999 7.658525 TGGTCTGCCATTACAATTCATTTAT 57.341 32.000 0.00 0.00 40.46 1.40
6697 7000 8.759481 TGGTCTGCCATTACAATTCATTTATA 57.241 30.769 0.00 0.00 40.46 0.98
6698 7001 8.849168 TGGTCTGCCATTACAATTCATTTATAG 58.151 33.333 0.00 0.00 40.46 1.31
6699 7002 9.066892 GGTCTGCCATTACAATTCATTTATAGA 57.933 33.333 0.00 0.00 34.09 1.98
6744 7047 0.373716 CGAAACAAGCATACGAGCCC 59.626 55.000 0.00 0.00 34.23 5.19
6783 7086 6.053650 ACAAAGTTACAGTCTAGGTTCAACC 58.946 40.000 0.00 0.00 38.99 3.77
6801 7104 1.470890 ACCGAACATTATTTGTGGCCG 59.529 47.619 0.00 0.00 38.99 6.13
6953 7256 1.535462 GGGTTTGGTGATCGTGTCTTG 59.465 52.381 0.00 0.00 0.00 3.02
6962 7265 2.029020 TGATCGTGTCTTGCTAGTGCTT 60.029 45.455 0.00 0.00 40.48 3.91
6972 7275 6.425114 TGTCTTGCTAGTGCTTTTAAAGAGAG 59.575 38.462 9.10 0.80 40.48 3.20
6973 7276 6.647067 GTCTTGCTAGTGCTTTTAAAGAGAGA 59.353 38.462 9.10 0.00 40.48 3.10
6974 7277 6.870965 TCTTGCTAGTGCTTTTAAAGAGAGAG 59.129 38.462 9.10 1.47 40.48 3.20
7003 7306 4.765339 GCTAGAGGTCTAGGAAAGGAGATC 59.235 50.000 14.52 0.00 44.63 2.75
7025 7328 0.896940 ACCGAGGTCGTAGGCTTTCA 60.897 55.000 0.00 0.00 37.74 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 8.830580 GCATGATTGTATACTTTGAAGAGCTAA 58.169 33.333 4.17 0.00 0.00 3.09
143 144 7.986889 TGCATGATTGTATACTTTGAAGAGCTA 59.013 33.333 4.17 0.00 0.00 3.32
144 145 6.825213 TGCATGATTGTATACTTTGAAGAGCT 59.175 34.615 4.17 0.00 0.00 4.09
145 146 7.019774 TGCATGATTGTATACTTTGAAGAGC 57.980 36.000 4.17 0.46 0.00 4.09
224 225 6.991938 TCCATGTTTTGAAAAGGTTATGGAG 58.008 36.000 15.72 1.16 38.24 3.86
311 317 0.179145 CCTACTTAGGACCACGCACG 60.179 60.000 0.00 0.00 46.63 5.34
350 356 9.725019 AGCGAAATAAATAATATGATCACAGGA 57.275 29.630 0.00 0.00 0.00 3.86
369 375 9.347934 CACGAGAGAGAAATAATATAGCGAAAT 57.652 33.333 0.00 0.00 0.00 2.17
370 376 8.350722 ACACGAGAGAGAAATAATATAGCGAAA 58.649 33.333 0.00 0.00 0.00 3.46
371 377 7.803659 CACACGAGAGAGAAATAATATAGCGAA 59.196 37.037 0.00 0.00 0.00 4.70
372 378 7.041303 ACACACGAGAGAGAAATAATATAGCGA 60.041 37.037 0.00 0.00 0.00 4.93
373 379 7.078851 ACACACGAGAGAGAAATAATATAGCG 58.921 38.462 0.00 0.00 0.00 4.26
374 380 9.332301 GTACACACGAGAGAGAAATAATATAGC 57.668 37.037 0.00 0.00 0.00 2.97
377 383 7.863375 GCAGTACACACGAGAGAGAAATAATAT 59.137 37.037 0.00 0.00 0.00 1.28
378 384 7.194278 GCAGTACACACGAGAGAGAAATAATA 58.806 38.462 0.00 0.00 0.00 0.98
379 385 6.037098 GCAGTACACACGAGAGAGAAATAAT 58.963 40.000 0.00 0.00 0.00 1.28
380 386 5.399858 GCAGTACACACGAGAGAGAAATAA 58.600 41.667 0.00 0.00 0.00 1.40
381 387 4.142447 GGCAGTACACACGAGAGAGAAATA 60.142 45.833 0.00 0.00 0.00 1.40
382 388 3.367498 GGCAGTACACACGAGAGAGAAAT 60.367 47.826 0.00 0.00 0.00 2.17
383 389 2.030185 GGCAGTACACACGAGAGAGAAA 60.030 50.000 0.00 0.00 0.00 2.52
384 390 1.540267 GGCAGTACACACGAGAGAGAA 59.460 52.381 0.00 0.00 0.00 2.87
385 391 1.166129 GGCAGTACACACGAGAGAGA 58.834 55.000 0.00 0.00 0.00 3.10
386 392 0.881796 TGGCAGTACACACGAGAGAG 59.118 55.000 0.00 0.00 0.00 3.20
387 393 1.269723 CTTGGCAGTACACACGAGAGA 59.730 52.381 0.00 0.00 0.00 3.10
388 394 1.000163 ACTTGGCAGTACACACGAGAG 60.000 52.381 0.00 0.00 0.00 3.20
389 395 1.037493 ACTTGGCAGTACACACGAGA 58.963 50.000 0.00 0.00 0.00 4.04
390 396 1.865865 AACTTGGCAGTACACACGAG 58.134 50.000 0.00 0.00 30.68 4.18
391 397 3.671008 ATAACTTGGCAGTACACACGA 57.329 42.857 0.00 0.00 30.68 4.35
392 398 6.417191 AATAATAACTTGGCAGTACACACG 57.583 37.500 0.00 0.00 30.68 4.49
393 399 7.590279 ACAAATAATAACTTGGCAGTACACAC 58.410 34.615 0.00 0.00 30.68 3.82
394 400 7.753309 ACAAATAATAACTTGGCAGTACACA 57.247 32.000 0.00 0.00 30.68 3.72
395 401 8.293867 TGAACAAATAATAACTTGGCAGTACAC 58.706 33.333 0.00 0.00 30.68 2.90
396 402 8.397575 TGAACAAATAATAACTTGGCAGTACA 57.602 30.769 0.00 0.00 30.68 2.90
397 403 9.855021 AATGAACAAATAATAACTTGGCAGTAC 57.145 29.630 0.00 0.00 30.68 2.73
414 420 9.653287 ACACGAGAGAGAAATATAATGAACAAA 57.347 29.630 0.00 0.00 0.00 2.83
415 421 9.087424 CACACGAGAGAGAAATATAATGAACAA 57.913 33.333 0.00 0.00 0.00 2.83
416 422 7.222805 GCACACGAGAGAGAAATATAATGAACA 59.777 37.037 0.00 0.00 0.00 3.18
417 423 7.436673 AGCACACGAGAGAGAAATATAATGAAC 59.563 37.037 0.00 0.00 0.00 3.18
418 424 7.436376 CAGCACACGAGAGAGAAATATAATGAA 59.564 37.037 0.00 0.00 0.00 2.57
419 425 6.920210 CAGCACACGAGAGAGAAATATAATGA 59.080 38.462 0.00 0.00 0.00 2.57
420 426 6.346439 GCAGCACACGAGAGAGAAATATAATG 60.346 42.308 0.00 0.00 0.00 1.90
421 427 5.694006 GCAGCACACGAGAGAGAAATATAAT 59.306 40.000 0.00 0.00 0.00 1.28
422 428 5.043903 GCAGCACACGAGAGAGAAATATAA 58.956 41.667 0.00 0.00 0.00 0.98
423 429 4.499865 GGCAGCACACGAGAGAGAAATATA 60.500 45.833 0.00 0.00 0.00 0.86
424 430 3.452474 GCAGCACACGAGAGAGAAATAT 58.548 45.455 0.00 0.00 0.00 1.28
425 431 2.417379 GGCAGCACACGAGAGAGAAATA 60.417 50.000 0.00 0.00 0.00 1.40
426 432 1.674221 GGCAGCACACGAGAGAGAAAT 60.674 52.381 0.00 0.00 0.00 2.17
427 433 0.319900 GGCAGCACACGAGAGAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
428 434 1.290324 GGCAGCACACGAGAGAGAA 59.710 57.895 0.00 0.00 0.00 2.87
429 435 1.463553 TTGGCAGCACACGAGAGAGA 61.464 55.000 0.00 0.00 0.00 3.10
430 436 1.005748 TTGGCAGCACACGAGAGAG 60.006 57.895 0.00 0.00 0.00 3.20
431 437 1.005748 CTTGGCAGCACACGAGAGA 60.006 57.895 0.00 0.00 0.00 3.10
432 438 0.882042 AACTTGGCAGCACACGAGAG 60.882 55.000 0.00 0.00 0.00 3.20
433 439 0.391228 TAACTTGGCAGCACACGAGA 59.609 50.000 0.00 0.00 0.00 4.04
434 440 1.442769 ATAACTTGGCAGCACACGAG 58.557 50.000 0.00 0.00 0.00 4.18
435 441 1.890876 AATAACTTGGCAGCACACGA 58.109 45.000 0.00 0.00 0.00 4.35
436 442 4.355543 AATAATAACTTGGCAGCACACG 57.644 40.909 0.00 0.00 0.00 4.49
437 443 5.954335 AGAAATAATAACTTGGCAGCACAC 58.046 37.500 0.00 0.00 0.00 3.82
438 444 5.945784 AGAGAAATAATAACTTGGCAGCACA 59.054 36.000 0.00 0.00 0.00 4.57
439 445 6.317391 AGAGAGAAATAATAACTTGGCAGCAC 59.683 38.462 0.00 0.00 0.00 4.40
440 446 6.418101 AGAGAGAAATAATAACTTGGCAGCA 58.582 36.000 0.00 0.00 0.00 4.41
441 447 6.934048 AGAGAGAAATAATAACTTGGCAGC 57.066 37.500 0.00 0.00 0.00 5.25
442 448 7.442666 GGGTAGAGAGAAATAATAACTTGGCAG 59.557 40.741 0.00 0.00 0.00 4.85
443 449 7.092623 TGGGTAGAGAGAAATAATAACTTGGCA 60.093 37.037 0.00 0.00 0.00 4.92
444 450 7.226918 GTGGGTAGAGAGAAATAATAACTTGGC 59.773 40.741 0.00 0.00 0.00 4.52
445 451 8.265055 TGTGGGTAGAGAGAAATAATAACTTGG 58.735 37.037 0.00 0.00 0.00 3.61
446 452 9.838339 ATGTGGGTAGAGAGAAATAATAACTTG 57.162 33.333 0.00 0.00 0.00 3.16
455 461 9.838339 CTTATGTTTATGTGGGTAGAGAGAAAT 57.162 33.333 0.00 0.00 0.00 2.17
456 462 8.822805 ACTTATGTTTATGTGGGTAGAGAGAAA 58.177 33.333 0.00 0.00 0.00 2.52
457 463 8.375493 ACTTATGTTTATGTGGGTAGAGAGAA 57.625 34.615 0.00 0.00 0.00 2.87
458 464 7.973048 ACTTATGTTTATGTGGGTAGAGAGA 57.027 36.000 0.00 0.00 0.00 3.10
473 479 9.457436 ACGAGGGACAAATAATAACTTATGTTT 57.543 29.630 0.00 0.00 37.59 2.83
474 480 8.889717 CACGAGGGACAAATAATAACTTATGTT 58.110 33.333 0.00 0.00 39.98 2.71
475 481 8.044908 ACACGAGGGACAAATAATAACTTATGT 58.955 33.333 0.00 0.00 0.00 2.29
476 482 8.433421 ACACGAGGGACAAATAATAACTTATG 57.567 34.615 0.00 0.00 0.00 1.90
477 483 9.538508 GTACACGAGGGACAAATAATAACTTAT 57.461 33.333 0.00 0.00 0.00 1.73
478 484 8.752187 AGTACACGAGGGACAAATAATAACTTA 58.248 33.333 0.00 0.00 0.00 2.24
479 485 7.548075 CAGTACACGAGGGACAAATAATAACTT 59.452 37.037 0.00 0.00 0.00 2.66
480 486 7.039882 CAGTACACGAGGGACAAATAATAACT 58.960 38.462 0.00 0.00 0.00 2.24
481 487 6.238022 GCAGTACACGAGGGACAAATAATAAC 60.238 42.308 0.00 0.00 0.00 1.89
482 488 5.813672 GCAGTACACGAGGGACAAATAATAA 59.186 40.000 0.00 0.00 0.00 1.40
483 489 5.353938 GCAGTACACGAGGGACAAATAATA 58.646 41.667 0.00 0.00 0.00 0.98
484 490 4.189231 GCAGTACACGAGGGACAAATAAT 58.811 43.478 0.00 0.00 0.00 1.28
485 491 3.592059 GCAGTACACGAGGGACAAATAA 58.408 45.455 0.00 0.00 0.00 1.40
486 492 2.416296 CGCAGTACACGAGGGACAAATA 60.416 50.000 2.41 0.00 0.00 1.40
487 493 1.671850 CGCAGTACACGAGGGACAAAT 60.672 52.381 2.41 0.00 0.00 2.32
488 494 0.319211 CGCAGTACACGAGGGACAAA 60.319 55.000 2.41 0.00 0.00 2.83
489 495 1.174078 TCGCAGTACACGAGGGACAA 61.174 55.000 6.89 0.00 33.96 3.18
490 496 1.174078 TTCGCAGTACACGAGGGACA 61.174 55.000 10.35 0.00 41.18 4.02
491 497 0.456312 CTTCGCAGTACACGAGGGAC 60.456 60.000 11.14 0.00 41.18 4.46
492 498 0.892358 ACTTCGCAGTACACGAGGGA 60.892 55.000 19.53 7.54 40.53 4.20
493 499 0.038526 AACTTCGCAGTACACGAGGG 60.039 55.000 19.53 14.40 40.53 4.30
494 500 1.060713 CAACTTCGCAGTACACGAGG 58.939 55.000 15.65 15.65 41.18 4.63
495 501 1.060713 CCAACTTCGCAGTACACGAG 58.939 55.000 10.35 8.08 41.18 4.18
496 502 0.319211 CCCAACTTCGCAGTACACGA 60.319 55.000 6.89 6.89 37.86 4.35
497 503 1.897398 GCCCAACTTCGCAGTACACG 61.897 60.000 0.00 0.00 30.68 4.49
498 504 1.574702 GGCCCAACTTCGCAGTACAC 61.575 60.000 0.00 0.00 30.68 2.90
499 505 1.302192 GGCCCAACTTCGCAGTACA 60.302 57.895 0.00 0.00 30.68 2.90
500 506 2.038837 GGGCCCAACTTCGCAGTAC 61.039 63.158 19.95 0.00 30.68 2.73
501 507 2.349755 GGGCCCAACTTCGCAGTA 59.650 61.111 19.95 0.00 30.68 2.74
502 508 3.884774 TGGGCCCAACTTCGCAGT 61.885 61.111 26.33 0.00 33.11 4.40
503 509 3.365265 GTGGGCCCAACTTCGCAG 61.365 66.667 30.64 0.00 0.00 5.18
504 510 4.196778 TGTGGGCCCAACTTCGCA 62.197 61.111 30.64 17.17 0.00 5.10
505 511 3.670377 GTGTGGGCCCAACTTCGC 61.670 66.667 30.64 17.63 0.00 4.70
506 512 1.515521 GAAGTGTGGGCCCAACTTCG 61.516 60.000 36.87 0.00 40.13 3.79
507 513 0.178990 AGAAGTGTGGGCCCAACTTC 60.179 55.000 39.43 39.43 46.59 3.01
508 514 1.145571 TAGAAGTGTGGGCCCAACTT 58.854 50.000 33.97 33.97 36.87 2.66
509 515 0.400594 GTAGAAGTGTGGGCCCAACT 59.599 55.000 30.64 27.21 0.00 3.16
510 516 0.400594 AGTAGAAGTGTGGGCCCAAC 59.599 55.000 30.64 25.43 0.00 3.77
511 517 2.032965 TAGTAGAAGTGTGGGCCCAA 57.967 50.000 30.64 14.78 0.00 4.12
512 518 2.263895 ATAGTAGAAGTGTGGGCCCA 57.736 50.000 24.45 24.45 0.00 5.36
513 519 2.633481 CCTATAGTAGAAGTGTGGGCCC 59.367 54.545 17.59 17.59 0.00 5.80
514 520 3.306613 ACCTATAGTAGAAGTGTGGGCC 58.693 50.000 0.00 0.00 0.00 5.80
515 521 4.404715 TCAACCTATAGTAGAAGTGTGGGC 59.595 45.833 0.00 0.00 0.00 5.36
516 522 6.098409 ACATCAACCTATAGTAGAAGTGTGGG 59.902 42.308 0.00 0.00 0.00 4.61
517 523 6.980978 CACATCAACCTATAGTAGAAGTGTGG 59.019 42.308 0.00 0.00 0.00 4.17
518 524 6.980978 CCACATCAACCTATAGTAGAAGTGTG 59.019 42.308 14.81 13.16 33.73 3.82
519 525 6.407074 GCCACATCAACCTATAGTAGAAGTGT 60.407 42.308 14.81 5.22 0.00 3.55
520 526 5.986135 GCCACATCAACCTATAGTAGAAGTG 59.014 44.000 11.56 11.56 0.00 3.16
521 527 5.661312 TGCCACATCAACCTATAGTAGAAGT 59.339 40.000 0.00 0.00 0.00 3.01
522 528 6.161855 TGCCACATCAACCTATAGTAGAAG 57.838 41.667 0.00 0.00 0.00 2.85
523 529 6.553953 TTGCCACATCAACCTATAGTAGAA 57.446 37.500 0.00 0.00 0.00 2.10
524 530 6.747414 ATTGCCACATCAACCTATAGTAGA 57.253 37.500 0.00 0.00 0.00 2.59
525 531 7.671302 AGTATTGCCACATCAACCTATAGTAG 58.329 38.462 0.00 0.00 0.00 2.57
526 532 7.256190 GGAGTATTGCCACATCAACCTATAGTA 60.256 40.741 0.00 0.00 0.00 1.82
527 533 6.464465 GGAGTATTGCCACATCAACCTATAGT 60.464 42.308 0.00 0.00 0.00 2.12
528 534 5.934625 GGAGTATTGCCACATCAACCTATAG 59.065 44.000 0.00 0.00 0.00 1.31
529 535 5.221843 GGGAGTATTGCCACATCAACCTATA 60.222 44.000 0.00 0.00 34.38 1.31
530 536 4.446311 GGGAGTATTGCCACATCAACCTAT 60.446 45.833 0.00 0.00 34.38 2.57
531 537 3.118038 GGGAGTATTGCCACATCAACCTA 60.118 47.826 0.00 0.00 34.38 3.08
532 538 2.357154 GGGAGTATTGCCACATCAACCT 60.357 50.000 0.00 0.00 34.38 3.50
533 539 2.024414 GGGAGTATTGCCACATCAACC 58.976 52.381 0.00 0.00 34.38 3.77
534 540 2.722094 TGGGAGTATTGCCACATCAAC 58.278 47.619 0.00 0.00 40.26 3.18
535 541 3.088532 GTTGGGAGTATTGCCACATCAA 58.911 45.455 0.00 0.00 45.39 2.57
536 542 2.040947 TGTTGGGAGTATTGCCACATCA 59.959 45.455 0.00 0.00 45.39 3.07
537 543 2.423538 GTGTTGGGAGTATTGCCACATC 59.576 50.000 0.00 0.00 45.39 3.06
538 544 2.041620 AGTGTTGGGAGTATTGCCACAT 59.958 45.455 0.00 0.00 45.39 3.21
539 545 1.423541 AGTGTTGGGAGTATTGCCACA 59.576 47.619 0.00 0.00 45.39 4.17
540 546 2.200373 AGTGTTGGGAGTATTGCCAC 57.800 50.000 0.00 0.00 45.39 5.01
541 547 2.890311 CAAAGTGTTGGGAGTATTGCCA 59.110 45.455 0.00 0.00 43.87 4.92
542 548 2.890945 ACAAAGTGTTGGGAGTATTGCC 59.109 45.455 0.00 0.00 39.22 4.52
543 549 5.897377 ATACAAAGTGTTGGGAGTATTGC 57.103 39.130 0.00 0.00 39.22 3.56
544 550 7.412563 CGTGTATACAAAGTGTTGGGAGTATTG 60.413 40.741 7.25 0.00 39.22 1.90
545 551 6.592607 CGTGTATACAAAGTGTTGGGAGTATT 59.407 38.462 7.25 0.00 39.22 1.89
546 552 6.103997 CGTGTATACAAAGTGTTGGGAGTAT 58.896 40.000 7.25 0.00 39.22 2.12
547 553 5.472148 CGTGTATACAAAGTGTTGGGAGTA 58.528 41.667 7.25 0.00 39.22 2.59
548 554 4.312443 CGTGTATACAAAGTGTTGGGAGT 58.688 43.478 7.25 0.00 39.22 3.85
549 555 3.124636 GCGTGTATACAAAGTGTTGGGAG 59.875 47.826 7.25 0.00 39.22 4.30
550 556 3.068560 GCGTGTATACAAAGTGTTGGGA 58.931 45.455 7.25 0.00 39.22 4.37
551 557 2.159761 CGCGTGTATACAAAGTGTTGGG 60.160 50.000 7.25 0.00 39.22 4.12
552 558 2.477375 ACGCGTGTATACAAAGTGTTGG 59.523 45.455 12.93 3.02 39.22 3.77
553 559 3.781341 ACGCGTGTATACAAAGTGTTG 57.219 42.857 12.93 4.68 40.84 3.33
554 560 4.925054 ACATACGCGTGTATACAAAGTGTT 59.075 37.500 24.59 14.48 39.28 3.32
555 561 4.487948 ACATACGCGTGTATACAAAGTGT 58.512 39.130 24.59 23.42 39.28 3.55
556 562 5.172591 CCTACATACGCGTGTATACAAAGTG 59.827 44.000 24.59 13.38 39.28 3.16
557 563 5.276270 CCTACATACGCGTGTATACAAAGT 58.724 41.667 24.59 15.68 39.28 2.66
558 564 4.147653 GCCTACATACGCGTGTATACAAAG 59.852 45.833 24.59 14.25 39.28 2.77
559 565 4.043750 GCCTACATACGCGTGTATACAAA 58.956 43.478 24.59 0.00 39.28 2.83
560 566 3.066481 TGCCTACATACGCGTGTATACAA 59.934 43.478 24.59 8.75 39.28 2.41
561 567 2.617774 TGCCTACATACGCGTGTATACA 59.382 45.455 24.59 13.74 39.28 2.29
562 568 3.231965 CTGCCTACATACGCGTGTATAC 58.768 50.000 24.59 11.41 39.28 1.47
563 569 2.880268 ACTGCCTACATACGCGTGTATA 59.120 45.455 24.59 8.13 39.28 1.47
564 570 1.679680 ACTGCCTACATACGCGTGTAT 59.320 47.619 24.59 15.75 42.03 2.29
565 571 1.097232 ACTGCCTACATACGCGTGTA 58.903 50.000 24.59 15.56 33.62 2.90
566 572 1.065102 CTACTGCCTACATACGCGTGT 59.935 52.381 24.59 13.76 36.13 4.49
567 573 1.755161 CTACTGCCTACATACGCGTG 58.245 55.000 24.59 8.88 0.00 5.34
568 574 0.030369 GCTACTGCCTACATACGCGT 59.970 55.000 19.17 19.17 0.00 6.01
569 575 0.997226 CGCTACTGCCTACATACGCG 60.997 60.000 3.53 3.53 35.36 6.01
570 576 0.030369 ACGCTACTGCCTACATACGC 59.970 55.000 0.00 0.00 35.36 4.42
571 577 3.436015 AGATACGCTACTGCCTACATACG 59.564 47.826 0.00 0.00 35.36 3.06
572 578 4.215827 ACAGATACGCTACTGCCTACATAC 59.784 45.833 0.00 0.00 37.61 2.39
573 579 4.395625 ACAGATACGCTACTGCCTACATA 58.604 43.478 0.00 0.00 37.61 2.29
574 580 3.223435 ACAGATACGCTACTGCCTACAT 58.777 45.455 0.00 0.00 37.61 2.29
575 581 2.651455 ACAGATACGCTACTGCCTACA 58.349 47.619 0.00 0.00 37.61 2.74
576 582 3.712091 AACAGATACGCTACTGCCTAC 57.288 47.619 0.00 0.00 37.61 3.18
577 583 4.201657 TGTAACAGATACGCTACTGCCTA 58.798 43.478 0.00 0.00 37.32 3.93
578 584 3.021695 TGTAACAGATACGCTACTGCCT 58.978 45.455 0.00 0.00 37.32 4.75
579 585 3.431922 TGTAACAGATACGCTACTGCC 57.568 47.619 0.00 0.00 37.32 4.85
580 586 5.061064 GCATATGTAACAGATACGCTACTGC 59.939 44.000 4.29 0.00 37.32 4.40
581 587 6.088217 GTGCATATGTAACAGATACGCTACTG 59.912 42.308 4.29 0.00 37.32 2.74
582 588 6.150318 GTGCATATGTAACAGATACGCTACT 58.850 40.000 4.29 0.00 37.32 2.57
583 589 5.918576 TGTGCATATGTAACAGATACGCTAC 59.081 40.000 4.29 0.00 37.32 3.58
584 590 5.918576 GTGTGCATATGTAACAGATACGCTA 59.081 40.000 12.06 0.00 37.32 4.26
668 674 2.769663 TCGGTCCTTACATGGCTTGTAT 59.230 45.455 13.26 0.00 40.46 2.29
675 681 4.600692 TGTCATATCGGTCCTTACATGG 57.399 45.455 0.00 0.00 0.00 3.66
678 684 5.186215 TCAGTTTGTCATATCGGTCCTTACA 59.814 40.000 0.00 0.00 0.00 2.41
681 687 4.819105 TCAGTTTGTCATATCGGTCCTT 57.181 40.909 0.00 0.00 0.00 3.36
683 689 5.642063 TCTTTTCAGTTTGTCATATCGGTCC 59.358 40.000 0.00 0.00 0.00 4.46
690 696 9.677567 GTTTTGCTATCTTTTCAGTTTGTCATA 57.322 29.630 0.00 0.00 0.00 2.15
713 719 9.671279 TCATATGTGTCAAACTCATAGATGTTT 57.329 29.630 1.90 0.00 37.79 2.83
741 777 2.129607 CGCAAAATGCTCCAATATGGC 58.870 47.619 0.43 0.00 42.25 4.40
772 808 3.814625 TCACTGGCTTGTAACACAATCA 58.185 40.909 0.00 0.00 37.48 2.57
789 825 4.380655 GCATGTTTAGTCCTCGTACTCACT 60.381 45.833 0.00 0.00 0.00 3.41
868 938 5.123979 CAGGCTTGTTGGTAGATTTAAGACC 59.876 44.000 0.00 0.00 0.00 3.85
1391 1472 5.940192 TGATACCAACAATGTTGTGAGTC 57.060 39.130 22.66 15.17 41.31 3.36
1455 1537 2.398498 GTCAGATCGTCCATTCATCCG 58.602 52.381 0.00 0.00 0.00 4.18
1458 1540 1.757118 ACCGTCAGATCGTCCATTCAT 59.243 47.619 0.00 0.00 0.00 2.57
1515 1599 0.937304 TCGCTGCAAGTGTGAGAAAC 59.063 50.000 0.00 0.00 46.69 2.78
1545 1631 1.202818 GGGGAGAAGGCGCATCTAATT 60.203 52.381 10.83 0.00 0.00 1.40
1566 1653 4.266714 CAAACCCCCAAATAGTGTACGAT 58.733 43.478 0.00 0.00 0.00 3.73
1723 1810 4.623167 GTCAATTCATCGTAGATGGGATCG 59.377 45.833 9.77 0.00 45.12 3.69
1812 1899 6.844696 TGTACAATTAATCAGAGAATCGGC 57.155 37.500 0.00 0.00 42.67 5.54
1846 1933 9.941664 CATAAACATCAATGGAACTAACTGATC 57.058 33.333 0.00 0.00 0.00 2.92
2192 2280 5.178996 CAGATCAATTTGAGATAAGCTCCCG 59.821 44.000 5.21 0.00 43.26 5.14
2239 2327 6.535150 TCAGCTATTGATAAAGAGAAACACCG 59.465 38.462 0.00 0.00 0.00 4.94
2726 2816 0.808453 ATCATTTACGTGTCGGCGGG 60.808 55.000 7.21 0.00 35.98 6.13
2728 2818 0.300491 CCATCATTTACGTGTCGGCG 59.700 55.000 0.00 0.00 37.94 6.46
2729 2819 0.655733 CCCATCATTTACGTGTCGGC 59.344 55.000 0.00 0.00 0.00 5.54
2821 2911 9.483916 CCAAACCTCAATACAACATATACGATA 57.516 33.333 0.00 0.00 0.00 2.92
2996 3087 6.566079 TCTATCAGATGACAAGGGAACATT 57.434 37.500 0.00 0.00 0.00 2.71
3000 3091 8.956446 TGTATATCTATCAGATGACAAGGGAA 57.044 34.615 0.00 0.00 35.37 3.97
3103 3197 5.824904 AAGATATTCGCAAGCATCAACTT 57.175 34.783 0.00 0.00 37.18 2.66
3117 3211 6.767902 TGACAGGTTGCTCCATTAAGATATTC 59.232 38.462 1.79 0.00 39.02 1.75
3180 3274 6.614160 TGTGCTTGATTATGTTCTGTTGATG 58.386 36.000 0.00 0.00 0.00 3.07
3221 3317 7.004691 GGGAAGAGGCCTAATATACAAACAAT 58.995 38.462 4.42 0.00 0.00 2.71
3222 3318 6.069323 TGGGAAGAGGCCTAATATACAAACAA 60.069 38.462 4.42 0.00 0.00 2.83
3223 3319 5.430417 TGGGAAGAGGCCTAATATACAAACA 59.570 40.000 4.42 0.00 0.00 2.83
3227 3323 4.019321 GCATGGGAAGAGGCCTAATATACA 60.019 45.833 4.42 0.92 0.00 2.29
3358 3454 7.552687 CCTATGCATGGAAGAGTTTAGTTGTTA 59.447 37.037 12.26 0.00 0.00 2.41
3381 3477 6.208599 CACCTAAATGAAAGAAGTTTGCCCTA 59.791 38.462 0.00 0.00 0.00 3.53
3403 3499 1.135689 CGCAGACCTATGCAAAACACC 60.136 52.381 0.00 0.00 46.87 4.16
3461 3557 6.052360 GGCAAAGTATTTAAGAGGAGAGAGG 58.948 44.000 0.00 0.00 35.03 3.69
3507 3603 1.933853 GTACAGGTGCTAAGAATGCCG 59.066 52.381 0.00 0.00 0.00 5.69
3513 3609 3.580895 TCCATGTTGTACAGGTGCTAAGA 59.419 43.478 0.00 0.00 0.00 2.10
3608 3704 7.490725 CAGCAACAGATAGCATATCATAGTACC 59.509 40.741 0.00 0.00 0.00 3.34
3732 3829 4.378770 CCATCATCCAATCGCCTAATTTCG 60.379 45.833 0.00 0.00 0.00 3.46
3799 3896 4.980805 GTCGACCCAACTGCGCCA 62.981 66.667 4.18 0.00 0.00 5.69
3948 4069 3.314553 TCTTAAAGGCGTGTCTTCTTCG 58.685 45.455 0.00 0.00 0.00 3.79
4110 4231 7.450634 ACTGAATGGTCACTTGAAGTACTAGTA 59.549 37.037 0.00 0.00 33.69 1.82
4291 4412 2.107204 CTGGTGATAAGGATTCAGGGGG 59.893 54.545 0.00 0.00 0.00 5.40
4309 4430 4.553323 CCAGCATCTTTCTTTTTCACTGG 58.447 43.478 0.00 0.00 36.53 4.00
4316 4437 2.699846 TGTTGCCCAGCATCTTTCTTTT 59.300 40.909 0.00 0.00 38.76 2.27
4318 4439 1.891150 CTGTTGCCCAGCATCTTTCTT 59.109 47.619 0.00 0.00 38.76 2.52
4374 4495 0.750249 GGGGCCAAAACGATAATGGG 59.250 55.000 4.39 0.00 34.71 4.00
4394 4515 8.740123 TGAATCGTACATATTGTAAACCCATT 57.260 30.769 0.00 0.00 34.21 3.16
4461 4582 4.627058 TGCTACATGACGACAAAGAAGAA 58.373 39.130 0.00 0.00 0.00 2.52
4522 4643 7.542025 ACAGAAATGGAAAGAATGTTATCTGC 58.458 34.615 0.00 0.00 35.23 4.26
4530 4651 8.048534 ACATACTGACAGAAATGGAAAGAATG 57.951 34.615 10.08 0.00 0.00 2.67
4535 4656 7.665559 AGCTTAACATACTGACAGAAATGGAAA 59.334 33.333 10.08 9.55 0.00 3.13
4593 4714 5.938125 TGAAGGTTTAATCACAGCTAAGGAC 59.062 40.000 0.00 0.00 0.00 3.85
4594 4715 6.121776 TGAAGGTTTAATCACAGCTAAGGA 57.878 37.500 0.00 0.00 0.00 3.36
4749 4870 6.149308 TGCAACCGATATGATATTCCATCAAC 59.851 38.462 0.00 0.00 0.00 3.18
4778 4899 2.484594 GGCCTTGAGTAGCTGAATCTCC 60.485 54.545 0.00 0.00 0.00 3.71
4814 4935 6.509418 TCATTTACCAGGCAATTTCTACAC 57.491 37.500 0.00 0.00 0.00 2.90
4905 5026 3.801698 AGTGATGAAGATTGGGACATCG 58.198 45.455 0.00 0.00 41.04 3.84
5028 5150 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
5034 5156 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5035 5157 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5036 5158 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5037 5159 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5038 5160 2.671396 CGACACTTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
5039 5161 2.037511 ACGACACTTATTTTGGGACGGA 59.962 45.455 0.00 0.00 0.00 4.69
5040 5162 2.419667 ACGACACTTATTTTGGGACGG 58.580 47.619 0.00 0.00 0.00 4.79
5041 5163 3.495377 TCAACGACACTTATTTTGGGACG 59.505 43.478 0.00 0.00 0.00 4.79
5042 5164 5.622770 ATCAACGACACTTATTTTGGGAC 57.377 39.130 0.00 0.00 0.00 4.46
5043 5165 6.642707 AAATCAACGACACTTATTTTGGGA 57.357 33.333 0.00 0.00 0.00 4.37
5044 5166 7.590279 ACTAAATCAACGACACTTATTTTGGG 58.410 34.615 0.00 0.00 0.00 4.12
5045 5167 9.537848 GTACTAAATCAACGACACTTATTTTGG 57.462 33.333 0.00 0.00 0.00 3.28
5049 5171 9.485206 AGTTGTACTAAATCAACGACACTTATT 57.515 29.630 0.00 0.00 45.56 1.40
5050 5172 9.485206 AAGTTGTACTAAATCAACGACACTTAT 57.515 29.630 0.00 0.00 45.56 1.73
5051 5173 8.876275 AAGTTGTACTAAATCAACGACACTTA 57.124 30.769 0.00 0.00 45.56 2.24
5052 5174 7.781548 AAGTTGTACTAAATCAACGACACTT 57.218 32.000 0.00 0.00 45.56 3.16
5053 5175 7.279313 ACAAAGTTGTACTAAATCAACGACACT 59.721 33.333 0.00 0.00 45.56 3.55
5054 5176 7.404203 ACAAAGTTGTACTAAATCAACGACAC 58.596 34.615 0.00 0.00 45.56 3.67
5055 5177 7.542534 ACAAAGTTGTACTAAATCAACGACA 57.457 32.000 0.00 0.00 45.56 4.35
5069 5191 6.924612 TGTCGCTGATTTAGTACAAAGTTGTA 59.075 34.615 0.00 0.00 42.35 2.41
5070 5192 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
5071 5193 6.071463 GTGTCGCTGATTTAGTACAAAGTTG 58.929 40.000 0.00 0.00 0.00 3.16
5072 5194 5.989777 AGTGTCGCTGATTTAGTACAAAGTT 59.010 36.000 0.00 0.00 0.00 2.66
5073 5195 5.539048 AGTGTCGCTGATTTAGTACAAAGT 58.461 37.500 0.00 0.00 0.00 2.66
5074 5196 6.467723 AAGTGTCGCTGATTTAGTACAAAG 57.532 37.500 0.00 0.00 0.00 2.77
5075 5197 8.542497 AATAAGTGTCGCTGATTTAGTACAAA 57.458 30.769 0.00 0.00 0.00 2.83
5076 5198 8.542497 AAATAAGTGTCGCTGATTTAGTACAA 57.458 30.769 6.91 0.00 36.68 2.41
5077 5199 8.440059 CAAAATAAGTGTCGCTGATTTAGTACA 58.560 33.333 8.84 0.00 37.29 2.90
5078 5200 7.903431 CCAAAATAAGTGTCGCTGATTTAGTAC 59.097 37.037 8.84 0.00 37.29 2.73
5079 5201 7.065324 CCCAAAATAAGTGTCGCTGATTTAGTA 59.935 37.037 8.84 0.00 37.29 1.82
5080 5202 6.128007 CCCAAAATAAGTGTCGCTGATTTAGT 60.128 38.462 8.84 0.00 37.29 2.24
5081 5203 6.093495 TCCCAAAATAAGTGTCGCTGATTTAG 59.907 38.462 8.84 4.74 37.29 1.85
5082 5204 5.941058 TCCCAAAATAAGTGTCGCTGATTTA 59.059 36.000 8.84 0.00 37.29 1.40
5083 5205 4.764823 TCCCAAAATAAGTGTCGCTGATTT 59.235 37.500 3.21 3.21 39.41 2.17
5084 5206 4.156008 GTCCCAAAATAAGTGTCGCTGATT 59.844 41.667 0.00 0.00 29.37 2.57
5085 5207 3.689649 GTCCCAAAATAAGTGTCGCTGAT 59.310 43.478 0.00 0.00 0.00 2.90
5086 5208 3.071479 GTCCCAAAATAAGTGTCGCTGA 58.929 45.455 0.00 0.00 0.00 4.26
5087 5209 2.811431 TGTCCCAAAATAAGTGTCGCTG 59.189 45.455 0.00 0.00 0.00 5.18
5088 5210 3.074412 CTGTCCCAAAATAAGTGTCGCT 58.926 45.455 0.00 0.00 0.00 4.93
5089 5211 3.071479 TCTGTCCCAAAATAAGTGTCGC 58.929 45.455 0.00 0.00 0.00 5.19
5090 5212 3.684788 CCTCTGTCCCAAAATAAGTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
5091 5213 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
5092 5214 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
5093 5215 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
5094 5216 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
5095 5217 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
5096 5218 5.098663 AGTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
5097 5219 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
5098 5220 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
5099 5221 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
5100 5222 2.637872 CAAGTACTCCCTCTGTCCCAAA 59.362 50.000 0.00 0.00 0.00 3.28
5101 5223 2.257207 CAAGTACTCCCTCTGTCCCAA 58.743 52.381 0.00 0.00 0.00 4.12
5102 5224 1.552486 CCAAGTACTCCCTCTGTCCCA 60.552 57.143 0.00 0.00 0.00 4.37
5103 5225 1.196012 CCAAGTACTCCCTCTGTCCC 58.804 60.000 0.00 0.00 0.00 4.46
5104 5226 1.939980 ACCAAGTACTCCCTCTGTCC 58.060 55.000 0.00 0.00 0.00 4.02
5105 5227 3.665190 CAAACCAAGTACTCCCTCTGTC 58.335 50.000 0.00 0.00 0.00 3.51
5106 5228 2.224548 GCAAACCAAGTACTCCCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
5107 5229 2.039084 AGCAAACCAAGTACTCCCTCTG 59.961 50.000 0.00 0.00 0.00 3.35
5108 5230 2.039084 CAGCAAACCAAGTACTCCCTCT 59.961 50.000 0.00 0.00 0.00 3.69
5109 5231 2.427506 CAGCAAACCAAGTACTCCCTC 58.572 52.381 0.00 0.00 0.00 4.30
5110 5232 1.545651 GCAGCAAACCAAGTACTCCCT 60.546 52.381 0.00 0.00 0.00 4.20
5111 5233 0.881796 GCAGCAAACCAAGTACTCCC 59.118 55.000 0.00 0.00 0.00 4.30
5112 5234 1.537202 CTGCAGCAAACCAAGTACTCC 59.463 52.381 0.00 0.00 0.00 3.85
5113 5235 1.068954 GCTGCAGCAAACCAAGTACTC 60.069 52.381 33.36 0.00 41.59 2.59
5114 5236 0.954452 GCTGCAGCAAACCAAGTACT 59.046 50.000 33.36 0.00 41.59 2.73
5158 5285 6.371548 TGTTGTTGAAGTATCCTACATGAAGC 59.628 38.462 0.00 0.00 0.00 3.86
5200 5327 0.183014 TACCTAGACCTCCTCTGCGG 59.817 60.000 0.00 0.00 0.00 5.69
5224 5351 5.581605 CAGAACTTTTTAAACTGCAGCTCA 58.418 37.500 15.27 0.00 0.00 4.26
5284 5411 6.486657 TCAGAACTGTTTCCTGGTATTTTCAG 59.513 38.462 8.76 0.00 31.28 3.02
5349 5477 5.522097 TGCAAATATCTACTCGCGAAAATCA 59.478 36.000 11.33 0.00 0.00 2.57
5684 5813 2.068821 ATGGAGTGCGAGCCCAGAT 61.069 57.895 0.00 0.00 32.90 2.90
5799 5928 1.112916 TTCACACAGAGGTCGCTCCA 61.113 55.000 0.00 0.00 39.02 3.86
5815 5946 1.278127 GACGGAGGGAGTTGGAATTCA 59.722 52.381 7.93 0.00 0.00 2.57
5816 5947 1.407025 GGACGGAGGGAGTTGGAATTC 60.407 57.143 0.00 0.00 0.00 2.17
5817 5948 0.618981 GGACGGAGGGAGTTGGAATT 59.381 55.000 0.00 0.00 0.00 2.17
5818 5949 1.272554 GGGACGGAGGGAGTTGGAAT 61.273 60.000 0.00 0.00 0.00 3.01
5819 5950 1.916777 GGGACGGAGGGAGTTGGAA 60.917 63.158 0.00 0.00 0.00 3.53
5821 5952 1.774894 TTTGGGACGGAGGGAGTTGG 61.775 60.000 0.00 0.00 0.00 3.77
5822 5953 0.109723 TTTTGGGACGGAGGGAGTTG 59.890 55.000 0.00 0.00 0.00 3.16
5823 5954 1.073098 ATTTTGGGACGGAGGGAGTT 58.927 50.000 0.00 0.00 0.00 3.01
5875 6006 3.634910 AGTGCCGTGGTTTCAGTTTAAAT 59.365 39.130 0.00 0.00 0.00 1.40
5884 6015 3.313690 CCAAAATAAGTGCCGTGGTTTC 58.686 45.455 0.00 0.00 0.00 2.78
5893 6024 2.678336 CTCTCCGTCCCAAAATAAGTGC 59.322 50.000 0.00 0.00 0.00 4.40
5906 6037 1.828979 ACAGAAGTCCTCTCTCCGTC 58.171 55.000 0.00 0.00 29.07 4.79
5917 6048 8.215132 CGAAAAGAGTGTACAATTACAGAAGTC 58.785 37.037 0.00 0.00 38.95 3.01
5942 6073 1.135046 CTCTTGCTGTCAGTGTCACG 58.865 55.000 0.93 0.00 0.00 4.35
5948 6079 2.027377 CAGGATTCCTCTTGCTGTCAGT 60.027 50.000 0.98 0.00 0.00 3.41
6177 6382 2.429610 GCGAAGATAGGTTACTGGGTCA 59.570 50.000 0.00 0.00 0.00 4.02
6213 6418 1.775385 CACAAGGGACCCTTTGTTGT 58.225 50.000 24.08 16.18 41.69 3.32
6236 6441 2.034879 AACGAGCAGGCCGTTGATG 61.035 57.895 15.96 0.00 46.77 3.07
6242 6447 1.082104 GTTTCAAACGAGCAGGCCG 60.082 57.895 0.00 0.00 0.00 6.13
6268 6473 1.934589 CGAAATCGTCAGGCCACATA 58.065 50.000 5.01 0.00 34.11 2.29
6297 6588 3.917329 ACAAAGTCGATCTTGAGTCGA 57.083 42.857 14.32 0.00 44.93 4.20
6379 6671 3.252974 ACCCAGCTGAATAAAGTCGAG 57.747 47.619 17.39 0.00 0.00 4.04
6402 6694 6.407202 ACAGTAAGACCATTTTCGAAGCTAT 58.593 36.000 0.00 0.00 0.00 2.97
6404 6696 4.642429 ACAGTAAGACCATTTTCGAAGCT 58.358 39.130 0.00 0.00 0.00 3.74
6410 6702 7.040686 ACACCAACATACAGTAAGACCATTTTC 60.041 37.037 0.00 0.00 0.00 2.29
6449 6741 2.598686 TTTACGTTGGGCCCAAAAAC 57.401 45.000 38.70 25.91 37.70 2.43
6450 6742 3.055312 ACTTTTTACGTTGGGCCCAAAAA 60.055 39.130 38.70 29.94 37.70 1.94
6456 6748 1.862201 GCAAACTTTTTACGTTGGGCC 59.138 47.619 0.00 0.00 0.00 5.80
6472 6764 4.650734 TGATCATAGGTGTCTTGTGCAAA 58.349 39.130 0.00 0.00 0.00 3.68
6508 6802 7.318893 TCGCATGATGAATTTTCCATTTTACA 58.681 30.769 0.00 0.00 0.00 2.41
6518 6812 5.209977 CGATGTGATCGCATGATGAATTTT 58.790 37.500 25.88 0.00 46.55 1.82
6520 6814 4.400036 CGATGTGATCGCATGATGAATT 57.600 40.909 25.88 0.00 46.55 2.17
6541 6838 7.971183 GATCATAGTGGGATCCTTTACTTTC 57.029 40.000 12.58 6.25 36.09 2.62
6554 6851 4.405680 TCAGTTGTGTAGGATCATAGTGGG 59.594 45.833 0.00 0.00 0.00 4.61
6566 6863 2.159787 GCGAGCATGTTCAGTTGTGTAG 60.160 50.000 10.36 0.00 0.00 2.74
6589 6886 7.480542 CAGGTTTGTGTAATCGTGTAATAAAGC 59.519 37.037 0.00 0.00 0.00 3.51
6663 6966 1.152984 TGGCAGACCAACACCACAG 60.153 57.895 0.00 0.00 45.37 3.66
6664 6967 3.002371 TGGCAGACCAACACCACA 58.998 55.556 0.00 0.00 45.37 4.17
6673 6976 9.066892 TCTATAAATGAATTGTAATGGCAGACC 57.933 33.333 0.00 0.00 0.00 3.85
6697 7000 7.813148 CGTATTTCCCTTGTTATCGTATCATCT 59.187 37.037 0.00 0.00 0.00 2.90
6698 7001 7.811236 TCGTATTTCCCTTGTTATCGTATCATC 59.189 37.037 0.00 0.00 0.00 2.92
6699 7002 7.597743 GTCGTATTTCCCTTGTTATCGTATCAT 59.402 37.037 0.00 0.00 0.00 2.45
6700 7003 6.919662 GTCGTATTTCCCTTGTTATCGTATCA 59.080 38.462 0.00 0.00 0.00 2.15
6701 7004 6.087291 CGTCGTATTTCCCTTGTTATCGTATC 59.913 42.308 0.00 0.00 0.00 2.24
6702 7005 5.916883 CGTCGTATTTCCCTTGTTATCGTAT 59.083 40.000 0.00 0.00 0.00 3.06
6703 7006 5.065859 TCGTCGTATTTCCCTTGTTATCGTA 59.934 40.000 0.00 0.00 0.00 3.43
6704 7007 4.107622 CGTCGTATTTCCCTTGTTATCGT 58.892 43.478 0.00 0.00 0.00 3.73
6705 7008 4.353737 TCGTCGTATTTCCCTTGTTATCG 58.646 43.478 0.00 0.00 0.00 2.92
6744 7047 3.009723 ACTTTGTACATTGCTCCCATCG 58.990 45.455 0.00 0.00 0.00 3.84
6783 7086 1.740585 TCCGGCCACAAATAATGTTCG 59.259 47.619 2.24 0.00 41.46 3.95
6801 7104 1.302033 CCATGGCGCCTCATACTCC 60.302 63.158 29.70 0.00 0.00 3.85
6953 7256 6.626302 TCTCTCTCTCTTTAAAAGCACTAGC 58.374 40.000 0.00 0.00 42.56 3.42
6962 7265 7.054124 CCTCTAGCTCTCTCTCTCTCTTTAAA 58.946 42.308 0.00 0.00 0.00 1.52
6972 7275 3.901844 TCCTAGACCTCTAGCTCTCTCTC 59.098 52.174 4.05 0.00 43.47 3.20
6973 7276 3.936461 TCCTAGACCTCTAGCTCTCTCT 58.064 50.000 4.05 0.00 43.47 3.10
6974 7277 4.699925 TTCCTAGACCTCTAGCTCTCTC 57.300 50.000 4.05 0.00 43.47 3.20
6998 7301 2.807392 CCTACGACCTCGGTAAGATCTC 59.193 54.545 0.00 0.00 44.95 2.75
7003 7306 1.101331 AAGCCTACGACCTCGGTAAG 58.899 55.000 0.00 0.00 44.95 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.