Multiple sequence alignment - TraesCS3D01G274600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G274600 chr3D 100.000 3643 0 0 1 3643 380812813 380816455 0.000000e+00 6728.0
1 TraesCS3D01G274600 chr3B 92.933 3283 112 29 424 3643 496613236 496616461 0.000000e+00 4667.0
2 TraesCS3D01G274600 chr3B 91.379 232 8 2 188 407 496612602 496612833 1.270000e-79 307.0
3 TraesCS3D01G274600 chr3A 91.932 3272 126 58 455 3643 504023007 504026223 0.000000e+00 4453.0
4 TraesCS3D01G274600 chr3A 90.164 427 21 5 1 419 504022594 504023007 1.490000e-148 536.0
5 TraesCS3D01G274600 chr6A 87.111 450 47 6 1779 2227 438036587 438036148 1.950000e-137 499.0
6 TraesCS3D01G274600 chr1A 81.324 423 51 19 2229 2643 530781635 530782037 5.870000e-83 318.0
7 TraesCS3D01G274600 chr1A 80.159 252 33 12 1048 1289 530780395 530780639 4.840000e-39 172.0
8 TraesCS3D01G274600 chr1A 88.983 118 6 5 1764 1881 530781185 530781295 4.910000e-29 139.0
9 TraesCS3D01G274600 chr1B 88.889 225 25 0 2229 2453 583760654 583760878 9.960000e-71 278.0
10 TraesCS3D01G274600 chr1B 81.124 249 33 10 1048 1289 583759616 583759857 1.730000e-43 187.0
11 TraesCS3D01G274600 chr1B 88.095 126 8 5 1764 1889 583760213 583760331 3.790000e-30 143.0
12 TraesCS3D01G274600 chr1D 84.892 278 35 6 2229 2503 432319747 432320020 1.290000e-69 274.0
13 TraesCS3D01G274600 chr1D 92.920 113 5 1 1180 1289 432318830 432318942 1.050000e-35 161.0
14 TraesCS3D01G274600 chr1D 88.983 118 6 5 1764 1881 432319300 432319410 4.910000e-29 139.0
15 TraesCS3D01G274600 chr1D 95.000 40 2 0 1838 1877 19039915 19039954 3.040000e-06 63.9
16 TraesCS3D01G274600 chr4B 89.372 207 21 1 2244 2449 658212378 658212584 3.610000e-65 259.0
17 TraesCS3D01G274600 chr5A 87.111 225 28 1 2244 2467 696925397 696925173 1.680000e-63 254.0
18 TraesCS3D01G274600 chr4D 88.889 207 22 1 2244 2449 509057230 509057024 1.680000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G274600 chr3D 380812813 380816455 3642 False 6728.000000 6728 100.000000 1 3643 1 chr3D.!!$F1 3642
1 TraesCS3D01G274600 chr3B 496612602 496616461 3859 False 2487.000000 4667 92.156000 188 3643 2 chr3B.!!$F1 3455
2 TraesCS3D01G274600 chr3A 504022594 504026223 3629 False 2494.500000 4453 91.048000 1 3643 2 chr3A.!!$F1 3642
3 TraesCS3D01G274600 chr1A 530780395 530782037 1642 False 209.666667 318 83.488667 1048 2643 3 chr1A.!!$F1 1595
4 TraesCS3D01G274600 chr1B 583759616 583760878 1262 False 202.666667 278 86.036000 1048 2453 3 chr1B.!!$F1 1405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 949 0.034059 CGTGAAACTCCAGTCCAGCT 59.966 55.0 0.00 0.0 31.75 4.24 F
688 1126 0.875059 GCTGCTGATAATAACCGGCC 59.125 55.0 0.00 0.0 33.91 6.13 F
839 1287 1.042559 CAGCTGACCTCTCCTCCTCC 61.043 65.0 8.42 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 3076 1.681780 GGGAATTGGAATGCCTCGACA 60.682 52.381 0.00 0.00 34.24 4.35 R
2618 3305 1.448013 GAGTTGCTGCCGGTAGTCC 60.448 63.158 21.31 9.04 0.00 3.85 R
2693 3380 3.320826 TCTTGGGGTTTTAGCTGCTTTTC 59.679 43.478 7.79 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.067142 TGCAGAAGTGGTATGTCGTCC 60.067 52.381 0.00 0.00 0.00 4.79
65 66 3.704800 AAAGCCCTAGAAAGTGGAGAC 57.295 47.619 0.00 0.00 0.00 3.36
76 77 3.434940 AAGTGGAGACGCCCTTAATTT 57.565 42.857 0.00 0.00 43.65 1.82
80 81 1.459450 GAGACGCCCTTAATTTGCCA 58.541 50.000 0.00 0.00 0.00 4.92
97 98 3.106054 TGCCAAATTACCTGCATTCCAT 58.894 40.909 0.00 0.00 0.00 3.41
98 99 3.118702 TGCCAAATTACCTGCATTCCATG 60.119 43.478 0.00 0.00 0.00 3.66
157 158 4.409247 CACCTAGCCTCCTATAACAACCTT 59.591 45.833 0.00 0.00 0.00 3.50
158 159 5.037598 ACCTAGCCTCCTATAACAACCTTT 58.962 41.667 0.00 0.00 0.00 3.11
160 161 5.130477 CCTAGCCTCCTATAACAACCTTTCA 59.870 44.000 0.00 0.00 0.00 2.69
170 171 7.393234 CCTATAACAACCTTTCACTTTCCATCA 59.607 37.037 0.00 0.00 0.00 3.07
185 186 8.800972 CACTTTCCATCAATTCATTTCATAACG 58.199 33.333 0.00 0.00 0.00 3.18
228 234 2.686405 ACCGTTTCCCAAAGTTCAGTTC 59.314 45.455 0.00 0.00 0.00 3.01
234 240 4.229304 TCCCAAAGTTCAGTTCAGTTGA 57.771 40.909 0.00 0.00 0.00 3.18
235 241 4.199310 TCCCAAAGTTCAGTTCAGTTGAG 58.801 43.478 0.00 0.00 0.00 3.02
236 242 3.947834 CCCAAAGTTCAGTTCAGTTGAGT 59.052 43.478 0.00 0.00 0.00 3.41
237 243 4.399303 CCCAAAGTTCAGTTCAGTTGAGTT 59.601 41.667 0.00 0.00 0.00 3.01
238 244 5.335127 CCAAAGTTCAGTTCAGTTGAGTTG 58.665 41.667 0.00 0.00 0.00 3.16
263 269 0.538118 TAAAACCGCCGCTGGTCTAT 59.462 50.000 7.25 1.39 42.89 1.98
315 333 7.190920 AGTTTACGATTTGAACTCCTCTTTG 57.809 36.000 0.00 0.00 0.00 2.77
318 336 4.703897 ACGATTTGAACTCCTCTTTGTGA 58.296 39.130 0.00 0.00 0.00 3.58
326 344 3.209410 ACTCCTCTTTGTGAACTGCAAG 58.791 45.455 0.00 0.00 42.29 4.01
410 428 2.919043 GGCAATCCCGATCACCCT 59.081 61.111 0.00 0.00 0.00 4.34
411 429 1.526917 GGCAATCCCGATCACCCTG 60.527 63.158 0.00 0.00 0.00 4.45
412 430 1.526887 GCAATCCCGATCACCCTGA 59.473 57.895 0.00 0.00 0.00 3.86
414 432 1.668419 CAATCCCGATCACCCTGAAC 58.332 55.000 0.00 0.00 0.00 3.18
415 433 0.546598 AATCCCGATCACCCTGAACC 59.453 55.000 0.00 0.00 0.00 3.62
416 434 0.620410 ATCCCGATCACCCTGAACCA 60.620 55.000 0.00 0.00 0.00 3.67
419 437 1.165270 CCGATCACCCTGAACCAAAC 58.835 55.000 0.00 0.00 0.00 2.93
420 438 1.544537 CCGATCACCCTGAACCAAACA 60.545 52.381 0.00 0.00 0.00 2.83
421 439 1.535462 CGATCACCCTGAACCAAACAC 59.465 52.381 0.00 0.00 0.00 3.32
422 440 2.810400 CGATCACCCTGAACCAAACACT 60.810 50.000 0.00 0.00 0.00 3.55
499 903 1.288752 GACGGCACCCCACAAAATG 59.711 57.895 0.00 0.00 0.00 2.32
545 949 0.034059 CGTGAAACTCCAGTCCAGCT 59.966 55.000 0.00 0.00 31.75 4.24
550 954 4.463879 CTCCAGTCCAGCTGCGGG 62.464 72.222 12.93 12.93 43.71 6.13
587 992 1.819229 CAGTAGTGCCTCGCAGGAT 59.181 57.895 6.40 0.00 40.08 3.24
644 1049 3.121544 GAGGCGAGGATAAACCGTAAAG 58.878 50.000 0.00 0.00 44.74 1.85
680 1118 6.202954 GGATACGTTTTACTGCTGCTGATAAT 59.797 38.462 13.69 0.00 0.00 1.28
688 1126 0.875059 GCTGCTGATAATAACCGGCC 59.125 55.000 0.00 0.00 33.91 6.13
839 1287 1.042559 CAGCTGACCTCTCCTCCTCC 61.043 65.000 8.42 0.00 0.00 4.30
1075 1551 2.661399 TCGTCGACGACCTCCTCT 59.339 61.111 34.97 0.00 44.22 3.69
1116 1592 1.383386 GGAGGAGGAGGAAGGGGTC 60.383 68.421 0.00 0.00 0.00 4.46
1296 1802 1.488261 GCGAGCCGGTAAATTCTCCG 61.488 60.000 1.90 12.42 45.42 4.63
1306 1849 2.859165 AAATTCTCCGTCCTTCTGCA 57.141 45.000 0.00 0.00 0.00 4.41
1415 1995 4.819105 ATCTGTTCCATTTACACGAGGA 57.181 40.909 0.00 0.00 0.00 3.71
1440 2023 9.768662 GAAATTCCATGGAAAAATGCATATACT 57.231 29.630 30.28 6.91 37.69 2.12
1443 2026 7.433708 TCCATGGAAAAATGCATATACTACG 57.566 36.000 13.46 0.00 0.00 3.51
1444 2027 6.429692 TCCATGGAAAAATGCATATACTACGG 59.570 38.462 13.46 0.00 0.00 4.02
1445 2028 6.429692 CCATGGAAAAATGCATATACTACGGA 59.570 38.462 5.56 0.00 0.00 4.69
1446 2029 7.121168 CCATGGAAAAATGCATATACTACGGAT 59.879 37.037 5.56 0.00 0.00 4.18
2041 2719 4.069232 CCTGCTCGTTCTCCCGCA 62.069 66.667 0.00 0.00 0.00 5.69
2195 2873 1.534959 ACAGGCTCAGGCTCAGTCA 60.535 57.895 0.00 0.00 35.88 3.41
2398 3076 2.181021 GAGCCCGACGTTCGTGAT 59.819 61.111 1.74 0.00 38.40 3.06
2414 3092 2.292267 GTGATGTCGAGGCATTCCAAT 58.708 47.619 0.00 0.00 33.74 3.16
2616 3303 4.371417 ACCACCGCCTAGGGACGA 62.371 66.667 11.72 0.00 46.96 4.20
2618 3305 4.189188 CACCGCCTAGGGACGACG 62.189 72.222 11.72 4.75 46.96 5.12
2916 3606 6.811954 CCTCAGAAACTAATTCTAGGGAGTC 58.188 44.000 0.00 0.00 46.80 3.36
2928 3618 5.126699 TCTAGGGAGTCGAGTCCTTTTAT 57.873 43.478 32.86 18.55 36.75 1.40
3012 3702 6.480320 CGCCTAGCTAGAATATGAAAACAAGT 59.520 38.462 22.70 0.00 0.00 3.16
3021 3711 6.362283 AGAATATGAAAACAAGTTTTTCGGCG 59.638 34.615 11.75 0.00 42.26 6.46
3060 3750 3.657398 ACTCCCATTCATGCAATCTCA 57.343 42.857 0.00 0.00 0.00 3.27
3118 3809 3.797039 TGGTAAGCAAGGATGAATCTCG 58.203 45.455 0.00 0.00 0.00 4.04
3121 3812 1.661341 AGCAAGGATGAATCTCGTGC 58.339 50.000 9.79 9.79 34.97 5.34
3149 3840 4.170062 CGCTCCGGCATGCACTTG 62.170 66.667 21.36 7.79 38.60 3.16
3150 3841 4.487412 GCTCCGGCATGCACTTGC 62.487 66.667 21.36 14.03 42.01 4.01
3215 3929 1.003331 CGCAACCGAACAAGCAAAGTA 60.003 47.619 0.00 0.00 36.29 2.24
3217 3931 3.440228 GCAACCGAACAAGCAAAGTAAA 58.560 40.909 0.00 0.00 0.00 2.01
3219 3933 4.416620 CAACCGAACAAGCAAAGTAAACA 58.583 39.130 0.00 0.00 0.00 2.83
3231 3945 4.714632 CAAAGTAAACACAAGGAGGAGGA 58.285 43.478 0.00 0.00 0.00 3.71
3260 3974 2.360767 CCATTGCCCACCCACCATG 61.361 63.158 0.00 0.00 0.00 3.66
3494 4217 2.194271 GAGAGCGTTTCCGGATAAGTG 58.806 52.381 4.15 0.00 33.68 3.16
3514 4255 1.450312 GGTCATTCACAGCCCCTCG 60.450 63.158 0.00 0.00 0.00 4.63
3515 4256 2.109126 GTCATTCACAGCCCCTCGC 61.109 63.158 0.00 0.00 37.98 5.03
3526 4267 4.711949 CCCTCGCTGCTGCAACCT 62.712 66.667 16.29 0.00 39.64 3.50
3527 4268 2.670934 CCTCGCTGCTGCAACCTT 60.671 61.111 16.29 0.00 39.64 3.50
3568 4309 1.148273 TGGCCAAGTGAAGCTTCGT 59.852 52.632 21.11 8.59 34.69 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.314541 ACTTGGACGACATACCACTTC 57.685 47.619 0.00 0.00 35.81 3.01
22 23 1.826720 GGGTACTTGGACGACATACCA 59.173 52.381 12.96 0.00 37.60 3.25
34 35 2.307686 TCTAGGGCTTTTGGGGTACTTG 59.692 50.000 0.00 0.00 0.00 3.16
65 66 3.868661 GGTAATTTGGCAAATTAAGGGCG 59.131 43.478 34.71 0.00 42.97 6.13
76 77 2.533916 TGGAATGCAGGTAATTTGGCA 58.466 42.857 0.00 0.00 41.00 4.92
80 81 5.210430 TCATCCATGGAATGCAGGTAATTT 58.790 37.500 20.67 0.00 44.97 1.82
97 98 1.619827 CTTGCAAGGCCTTTTCATCCA 59.380 47.619 17.61 3.49 0.00 3.41
98 99 1.895131 TCTTGCAAGGCCTTTTCATCC 59.105 47.619 25.73 0.70 0.00 3.51
158 159 9.859427 GTTATGAAATGAATTGATGGAAAGTGA 57.141 29.630 0.00 0.00 0.00 3.41
160 161 7.975616 CCGTTATGAAATGAATTGATGGAAAGT 59.024 33.333 0.00 0.00 0.00 2.66
170 171 5.659440 AACAGGCCGTTATGAAATGAATT 57.341 34.783 10.62 0.00 35.52 2.17
185 186 2.685388 GAGCAAGAGGAAATAACAGGCC 59.315 50.000 0.00 0.00 0.00 5.19
228 234 4.359706 GGTTTTACTTGCCAACTCAACTG 58.640 43.478 0.00 0.00 0.00 3.16
234 240 0.671796 GGCGGTTTTACTTGCCAACT 59.328 50.000 0.00 0.00 46.76 3.16
235 241 3.188773 GGCGGTTTTACTTGCCAAC 57.811 52.632 0.00 0.00 46.76 3.77
238 244 2.126618 GCGGCGGTTTTACTTGCC 60.127 61.111 9.78 0.00 44.09 4.52
263 269 1.959226 GGTTCGCAAACTGCTCCGA 60.959 57.895 0.00 0.00 42.25 4.55
315 333 1.527433 GGGGAAGGCTTGCAGTTCAC 61.527 60.000 20.63 0.00 0.00 3.18
318 336 1.774894 TACGGGGAAGGCTTGCAGTT 61.775 55.000 20.63 5.84 0.00 3.16
326 344 3.384532 TCACCGTACGGGGAAGGC 61.385 66.667 36.23 0.00 46.08 4.35
407 425 2.104792 TCTCTCAGTGTTTGGTTCAGGG 59.895 50.000 0.00 0.00 0.00 4.45
410 428 3.960755 TCTCTCTCTCAGTGTTTGGTTCA 59.039 43.478 0.00 0.00 0.00 3.18
411 429 4.279671 TCTCTCTCTCTCAGTGTTTGGTTC 59.720 45.833 0.00 0.00 0.00 3.62
412 430 4.219115 TCTCTCTCTCTCAGTGTTTGGTT 58.781 43.478 0.00 0.00 0.00 3.67
414 432 4.078537 TCTCTCTCTCTCTCAGTGTTTGG 58.921 47.826 0.00 0.00 0.00 3.28
415 433 5.003160 TCTCTCTCTCTCTCTCAGTGTTTG 58.997 45.833 0.00 0.00 0.00 2.93
416 434 5.013079 TCTCTCTCTCTCTCTCTCAGTGTTT 59.987 44.000 0.00 0.00 0.00 2.83
419 437 4.403752 TCTCTCTCTCTCTCTCTCTCAGTG 59.596 50.000 0.00 0.00 0.00 3.66
420 438 4.614475 TCTCTCTCTCTCTCTCTCTCAGT 58.386 47.826 0.00 0.00 0.00 3.41
421 439 4.892345 TCTCTCTCTCTCTCTCTCTCTCAG 59.108 50.000 0.00 0.00 0.00 3.35
422 440 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
517 921 3.317695 GAGTTTCACGTCGCGTCGC 62.318 63.158 24.76 7.29 38.32 5.19
518 922 2.704193 GGAGTTTCACGTCGCGTCG 61.704 63.158 23.39 23.39 38.32 5.12
606 1011 3.067833 GCCTCCGCCAAGTATATTCTTC 58.932 50.000 0.00 0.00 0.00 2.87
644 1049 0.676782 AACGTATCCCAGCAACCTGC 60.677 55.000 0.00 0.00 45.46 4.85
660 1098 6.192360 GGTTATTATCAGCAGCAGTAAAACG 58.808 40.000 0.00 0.00 0.00 3.60
680 1118 2.721971 TAAAACGCCACGGCCGGTTA 62.722 55.000 31.76 12.18 37.98 2.85
688 1126 1.206578 CCAGCAGTAAAACGCCACG 59.793 57.895 0.00 0.00 0.00 4.94
742 1188 4.579384 ACCACCAACAGTGCCCCG 62.579 66.667 0.00 0.00 45.83 5.73
743 1189 2.912025 CACCACCAACAGTGCCCC 60.912 66.667 0.00 0.00 45.83 5.80
784 1230 8.575649 TTCTTAAGGAGTAAATAAAGCCAAGG 57.424 34.615 1.85 0.00 0.00 3.61
1156 1659 2.586792 GGCCTCCTGCTTGACGAT 59.413 61.111 0.00 0.00 40.92 3.73
1296 1802 1.947456 ACGAAAAAGGTGCAGAAGGAC 59.053 47.619 0.00 0.00 35.01 3.85
1306 1849 4.188462 TGATGATGCGATACGAAAAAGGT 58.812 39.130 0.00 0.00 0.00 3.50
1440 2023 9.878667 TGTGAAATCACTCTTAAATAATCCGTA 57.121 29.630 14.15 0.00 46.55 4.02
1441 2024 8.786826 TGTGAAATCACTCTTAAATAATCCGT 57.213 30.769 14.15 0.00 46.55 4.69
2398 3076 1.681780 GGGAATTGGAATGCCTCGACA 60.682 52.381 0.00 0.00 34.24 4.35
2618 3305 1.448013 GAGTTGCTGCCGGTAGTCC 60.448 63.158 21.31 9.04 0.00 3.85
2679 3366 7.886629 AGCTGCTTTTCATTATTATTCCTGA 57.113 32.000 0.00 0.00 0.00 3.86
2693 3380 3.320826 TCTTGGGGTTTTAGCTGCTTTTC 59.679 43.478 7.79 0.00 0.00 2.29
2755 3442 9.907229 AGAAAACTGGGAAAATATAACTCCTAG 57.093 33.333 8.60 8.60 42.08 3.02
2916 3606 9.626045 AAAATGCTAAGAAAATAAAAGGACTCG 57.374 29.630 0.00 0.00 0.00 4.18
2953 3643 8.352942 AGAAGCAAAAGTCGAAATGAAAAGTAT 58.647 29.630 0.00 0.00 0.00 2.12
3021 3711 5.402867 GGGAGTTATCTCGATCGAACAATTC 59.597 44.000 19.92 16.63 41.26 2.17
3060 3750 3.519510 TGCCAAAGCTATCTACTGGACTT 59.480 43.478 0.00 0.00 40.80 3.01
3149 3840 2.126071 CATGGCTGCTGCAACTGC 60.126 61.111 17.89 10.22 41.91 4.40
3150 3841 2.126071 GCATGGCTGCTGCAACTG 60.126 61.111 17.89 11.55 45.32 3.16
3151 3842 3.744719 CGCATGGCTGCTGCAACT 61.745 61.111 17.89 0.00 46.65 3.16
3152 3843 4.047059 ACGCATGGCTGCTGCAAC 62.047 61.111 17.89 0.00 46.65 4.17
3153 3844 4.045771 CACGCATGGCTGCTGCAA 62.046 61.111 17.89 6.50 46.65 4.08
3156 3847 4.771356 GTGCACGCATGGCTGCTG 62.771 66.667 0.00 0.00 46.65 4.41
3158 3849 4.471726 GAGTGCACGCATGGCTGC 62.472 66.667 16.26 0.00 45.31 5.25
3159 3850 2.404186 ATGAGTGCACGCATGGCTG 61.404 57.895 31.50 0.00 35.09 4.85
3160 3851 2.045634 ATGAGTGCACGCATGGCT 60.046 55.556 31.50 11.75 35.09 4.75
3161 3852 2.101575 CATGAGTGCACGCATGGC 59.898 61.111 39.93 17.26 46.04 4.40
3215 3929 0.402121 GCCTCCTCCTCCTTGTGTTT 59.598 55.000 0.00 0.00 0.00 2.83
3217 3931 2.286523 CGCCTCCTCCTCCTTGTGT 61.287 63.158 0.00 0.00 0.00 3.72
3219 3933 1.684049 CTCGCCTCCTCCTCCTTGT 60.684 63.158 0.00 0.00 0.00 3.16
3260 3974 2.501610 GGACGGACTGATGGAGCC 59.498 66.667 0.00 0.00 0.00 4.70
3336 4056 1.936547 GCTCTGATTGGATCCAACGAC 59.063 52.381 29.32 21.62 38.88 4.34
3520 4261 3.966329 GGCAAATCCAGGCAAGGTTGC 62.966 57.143 6.12 6.12 43.40 4.17
3521 4262 0.037046 GGCAAATCCAGGCAAGGTTG 60.037 55.000 0.00 0.00 34.01 3.77
3522 4263 0.471591 TGGCAAATCCAGGCAAGGTT 60.472 50.000 0.00 0.00 40.72 3.50
3523 4264 1.155859 TGGCAAATCCAGGCAAGGT 59.844 52.632 0.00 0.00 40.72 3.50
3524 4265 4.116926 TGGCAAATCCAGGCAAGG 57.883 55.556 0.00 0.00 40.72 3.61
3568 4309 2.540265 TGGTTACGGCGAGGTAAAAA 57.460 45.000 16.62 0.00 34.41 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.