Multiple sequence alignment - TraesCS3D01G274100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G274100 chr3D 100.000 3107 0 0 1 3107 380096107 380099213 0.000000e+00 5738.0
1 TraesCS3D01G274100 chr3D 97.634 930 17 2 2178 3107 437767504 437768428 0.000000e+00 1591.0
2 TraesCS3D01G274100 chr3D 97.005 935 17 4 2173 3107 442854190 442855113 0.000000e+00 1561.0
3 TraesCS3D01G274100 chr2D 94.917 1259 57 4 925 2177 36096315 36095058 0.000000e+00 1964.0
4 TraesCS3D01G274100 chr2D 92.749 1255 68 12 925 2172 35927600 35928838 0.000000e+00 1792.0
5 TraesCS3D01G274100 chr2D 97.744 931 19 2 2178 3107 284520603 284519674 0.000000e+00 1602.0
6 TraesCS3D01G274100 chr2D 97.300 926 18 3 2184 3107 450388416 450387496 0.000000e+00 1565.0
7 TraesCS3D01G274100 chr2D 96.992 931 26 2 2178 3107 306277350 306276421 0.000000e+00 1563.0
8 TraesCS3D01G274100 chr2D 90.414 845 68 9 929 1771 35978659 35979492 0.000000e+00 1099.0
9 TraesCS3D01G274100 chr2D 79.282 1197 219 19 925 2107 36052189 36053370 0.000000e+00 809.0
10 TraesCS3D01G274100 chr2D 86.752 468 52 6 418 875 459390 459857 2.140000e-141 512.0
11 TraesCS3D01G274100 chr2D 95.000 280 10 2 1902 2177 36094109 36093830 1.320000e-118 436.0
12 TraesCS3D01G274100 chr2D 85.673 349 20 14 76 418 36096628 36096304 1.070000e-89 340.0
13 TraesCS3D01G274100 chr2D 96.296 54 1 1 1 53 36096682 36096629 1.530000e-13 87.9
14 TraesCS3D01G274100 chr2B 93.312 1256 78 5 925 2178 61297846 61299097 0.000000e+00 1849.0
15 TraesCS3D01G274100 chr2B 93.153 1256 69 7 925 2178 61362083 61363323 0.000000e+00 1827.0
16 TraesCS3D01G274100 chr2B 90.455 681 40 13 925 1599 61491462 61490801 0.000000e+00 874.0
17 TraesCS3D01G274100 chr2B 78.328 1172 216 28 994 2147 61476418 61475267 0.000000e+00 723.0
18 TraesCS3D01G274100 chr2B 96.353 329 9 3 1 327 61290188 61290515 3.530000e-149 538.0
19 TraesCS3D01G274100 chr2B 90.110 273 20 5 150 418 61361825 61362094 6.380000e-92 348.0
20 TraesCS3D01G274100 chr2B 80.420 286 37 13 104 378 61476745 61476468 1.890000e-47 200.0
21 TraesCS3D01G274100 chr2B 93.220 118 7 1 1 117 61361709 61361826 4.120000e-39 172.0
22 TraesCS3D01G274100 chr2B 92.593 81 6 0 338 418 61297777 61297857 1.960000e-22 117.0
23 TraesCS3D01G274100 chr2A 93.328 1259 73 6 929 2177 39310919 39312176 0.000000e+00 1849.0
24 TraesCS3D01G274100 chr2A 78.128 1239 232 28 929 2147 39452810 39451591 0.000000e+00 750.0
25 TraesCS3D01G274100 chr2A 78.019 1242 223 35 925 2134 39355141 39356364 0.000000e+00 736.0
26 TraesCS3D01G274100 chr2A 92.778 180 13 0 418 597 2811309 2811130 8.550000e-66 261.0
27 TraesCS3D01G274100 chr2A 82.979 94 8 5 191 276 39354985 39355078 9.240000e-11 78.7
28 TraesCS3D01G274100 chr2A 92.000 50 4 0 362 411 39310866 39310915 1.550000e-08 71.3
29 TraesCS3D01G274100 chr1D 97.742 930 16 2 2178 3107 126216796 126217720 0.000000e+00 1596.0
30 TraesCS3D01G274100 chr1D 97.207 931 24 2 2178 3107 87823482 87824411 0.000000e+00 1574.0
31 TraesCS3D01G274100 chr4D 97.530 931 18 2 2177 3107 85622291 85621366 0.000000e+00 1587.0
32 TraesCS3D01G274100 chr7D 96.888 932 22 4 2178 3107 580326876 580327802 0.000000e+00 1554.0
33 TraesCS3D01G274100 chr7D 86.258 473 46 13 418 876 352533 353000 2.150000e-136 496.0
34 TraesCS3D01G274100 chr4B 87.288 472 45 13 416 876 2745602 2745135 2.740000e-145 525.0
35 TraesCS3D01G274100 chr4B 86.681 473 41 13 418 876 581921542 581922006 3.580000e-139 505.0
36 TraesCS3D01G274100 chr4B 86.105 475 47 16 417 880 65935865 65936331 7.740000e-136 494.0
37 TraesCS3D01G274100 chrUn 87.234 470 43 11 418 875 22715967 22716431 1.280000e-143 520.0
38 TraesCS3D01G274100 chr3B 87.131 474 42 14 418 879 773520427 773519961 1.280000e-143 520.0
39 TraesCS3D01G274100 chr5D 86.526 475 46 11 415 876 312350987 312351456 9.940000e-140 507.0
40 TraesCS3D01G274100 chr5B 86.354 469 50 9 419 875 527189419 527189885 1.660000e-137 499.0
41 TraesCS3D01G274100 chr5B 85.011 467 56 9 418 875 642089055 642089516 2.180000e-126 462.0
42 TraesCS3D01G274100 chr4A 86.452 465 48 10 418 871 609576734 609576274 2.150000e-136 496.0
43 TraesCS3D01G274100 chr4A 86.301 438 42 11 451 876 729448391 729447960 7.850000e-126 460.0
44 TraesCS3D01G274100 chr1A 85.163 492 56 10 417 896 583298500 583298986 3.600000e-134 488.0
45 TraesCS3D01G274100 chr1A 85.169 472 58 6 413 875 48757727 48758195 1.010000e-129 473.0
46 TraesCS3D01G274100 chr1B 85.775 471 54 6 416 876 522754524 522754991 1.300000e-133 486.0
47 TraesCS3D01G274100 chr7A 92.818 181 13 0 417 597 572184172 572183992 2.380000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G274100 chr3D 380096107 380099213 3106 False 5738.000000 5738 100.0000 1 3107 1 chr3D.!!$F1 3106
1 TraesCS3D01G274100 chr3D 437767504 437768428 924 False 1591.000000 1591 97.6340 2178 3107 1 chr3D.!!$F2 929
2 TraesCS3D01G274100 chr3D 442854190 442855113 923 False 1561.000000 1561 97.0050 2173 3107 1 chr3D.!!$F3 934
3 TraesCS3D01G274100 chr2D 35927600 35928838 1238 False 1792.000000 1792 92.7490 925 2172 1 chr2D.!!$F2 1247
4 TraesCS3D01G274100 chr2D 284519674 284520603 929 True 1602.000000 1602 97.7440 2178 3107 1 chr2D.!!$R1 929
5 TraesCS3D01G274100 chr2D 450387496 450388416 920 True 1565.000000 1565 97.3000 2184 3107 1 chr2D.!!$R3 923
6 TraesCS3D01G274100 chr2D 306276421 306277350 929 True 1563.000000 1563 96.9920 2178 3107 1 chr2D.!!$R2 929
7 TraesCS3D01G274100 chr2D 35978659 35979492 833 False 1099.000000 1099 90.4140 929 1771 1 chr2D.!!$F3 842
8 TraesCS3D01G274100 chr2D 36052189 36053370 1181 False 809.000000 809 79.2820 925 2107 1 chr2D.!!$F4 1182
9 TraesCS3D01G274100 chr2D 36093830 36096682 2852 True 706.975000 1964 92.9715 1 2177 4 chr2D.!!$R4 2176
10 TraesCS3D01G274100 chr2B 61297777 61299097 1320 False 983.000000 1849 92.9525 338 2178 2 chr2B.!!$F2 1840
11 TraesCS3D01G274100 chr2B 61490801 61491462 661 True 874.000000 874 90.4550 925 1599 1 chr2B.!!$R1 674
12 TraesCS3D01G274100 chr2B 61361709 61363323 1614 False 782.333333 1827 92.1610 1 2178 3 chr2B.!!$F3 2177
13 TraesCS3D01G274100 chr2B 61475267 61476745 1478 True 461.500000 723 79.3740 104 2147 2 chr2B.!!$R2 2043
14 TraesCS3D01G274100 chr2A 39310866 39312176 1310 False 960.150000 1849 92.6640 362 2177 2 chr2A.!!$F1 1815
15 TraesCS3D01G274100 chr2A 39451591 39452810 1219 True 750.000000 750 78.1280 929 2147 1 chr2A.!!$R2 1218
16 TraesCS3D01G274100 chr2A 39354985 39356364 1379 False 407.350000 736 80.4990 191 2134 2 chr2A.!!$F2 1943
17 TraesCS3D01G274100 chr1D 126216796 126217720 924 False 1596.000000 1596 97.7420 2178 3107 1 chr1D.!!$F2 929
18 TraesCS3D01G274100 chr1D 87823482 87824411 929 False 1574.000000 1574 97.2070 2178 3107 1 chr1D.!!$F1 929
19 TraesCS3D01G274100 chr4D 85621366 85622291 925 True 1587.000000 1587 97.5300 2177 3107 1 chr4D.!!$R1 930
20 TraesCS3D01G274100 chr7D 580326876 580327802 926 False 1554.000000 1554 96.8880 2178 3107 1 chr7D.!!$F2 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 597 0.031449 TTAAACCTTTGCAGCGTGGC 59.969 50.000 0.00 0.00 0.00 5.01 F
734 771 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69 F
843 880 0.464554 GACAGCCAGGATAACAGGGC 60.465 60.000 0.00 0.00 46.77 5.19 F
850 887 1.073199 GGATAACAGGGCCCGGATG 59.927 63.158 30.18 18.73 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1680 0.379316 TGATAGCGTATGTCGTGCGT 59.621 50.000 4.44 0.0 42.13 5.24 R
1652 1738 0.400213 ATGCAACCTCCACTCGGAAA 59.600 50.000 0.00 0.0 42.21 3.13 R
1924 2011 0.896940 AACTCCACTCCCTCGCGTAA 60.897 55.000 5.77 0.0 0.00 3.18 R
2329 3656 1.204941 AGTACGTCCAACATCCTCTGC 59.795 52.381 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 146 5.066375 TCAATGCCGATTTAACTCCTGATTG 59.934 40.000 0.00 0.00 0.00 2.67
153 156 1.230281 TCCTGATTGGGCTCCCCTT 60.230 57.895 1.89 0.00 45.70 3.95
170 173 0.624254 CTTCCCCAACCCTAGTTCCC 59.376 60.000 0.00 0.00 32.45 3.97
173 176 1.279749 CCCCAACCCTAGTTCCCTCC 61.280 65.000 0.00 0.00 32.45 4.30
182 185 2.547123 TAGTTCCCTCCTGGCTCCCC 62.547 65.000 0.00 0.00 0.00 4.81
186 189 2.368594 CCTCCTGGCTCCCCTGTA 59.631 66.667 0.00 0.00 0.00 2.74
232 249 1.307097 CCGACTCGGGTTCTAGGTAG 58.693 60.000 9.85 0.00 44.15 3.18
248 273 2.090719 AGGTAGTCTGCCCTTGCCTATA 60.091 50.000 2.92 0.00 36.33 1.31
249 274 2.907042 GGTAGTCTGCCCTTGCCTATAT 59.093 50.000 0.00 0.00 36.33 0.86
403 440 9.444600 TTGTCTATAAATTTCAACTCCTGTACC 57.555 33.333 0.00 0.00 0.00 3.34
406 443 2.109425 ATTTCAACTCCTGTACCGGC 57.891 50.000 0.00 0.00 0.00 6.13
407 444 0.759959 TTTCAACTCCTGTACCGGCA 59.240 50.000 0.00 0.00 0.00 5.69
408 445 0.759959 TTCAACTCCTGTACCGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
409 446 0.034337 TCAACTCCTGTACCGGCAAC 59.966 55.000 0.00 0.00 0.00 4.17
410 447 0.953960 CAACTCCTGTACCGGCAACC 60.954 60.000 0.00 0.00 0.00 3.77
411 448 1.125711 AACTCCTGTACCGGCAACCT 61.126 55.000 0.00 0.00 0.00 3.50
412 449 1.218316 CTCCTGTACCGGCAACCTC 59.782 63.158 0.00 0.00 0.00 3.85
413 450 2.125673 CCTGTACCGGCAACCTCG 60.126 66.667 0.00 0.00 0.00 4.63
414 451 2.654877 CTGTACCGGCAACCTCGT 59.345 61.111 0.00 0.00 0.00 4.18
415 452 1.597797 CCTGTACCGGCAACCTCGTA 61.598 60.000 0.00 0.00 0.00 3.43
416 453 0.244450 CTGTACCGGCAACCTCGTAA 59.756 55.000 0.00 0.00 0.00 3.18
417 454 0.038343 TGTACCGGCAACCTCGTAAC 60.038 55.000 0.00 0.00 0.00 2.50
418 455 1.072666 GTACCGGCAACCTCGTAACG 61.073 60.000 0.00 0.00 0.00 3.18
419 456 1.240641 TACCGGCAACCTCGTAACGA 61.241 55.000 0.00 0.00 0.00 3.85
437 474 9.655769 TCGTAACGAGAACATATAATAGAACAC 57.344 33.333 0.00 0.00 0.00 3.32
438 475 8.899776 CGTAACGAGAACATATAATAGAACACC 58.100 37.037 0.00 0.00 0.00 4.16
439 476 9.962783 GTAACGAGAACATATAATAGAACACCT 57.037 33.333 0.00 0.00 0.00 4.00
440 477 8.873215 AACGAGAACATATAATAGAACACCTG 57.127 34.615 0.00 0.00 0.00 4.00
441 478 6.924060 ACGAGAACATATAATAGAACACCTGC 59.076 38.462 0.00 0.00 0.00 4.85
442 479 6.923508 CGAGAACATATAATAGAACACCTGCA 59.076 38.462 0.00 0.00 0.00 4.41
443 480 7.096023 CGAGAACATATAATAGAACACCTGCAC 60.096 40.741 0.00 0.00 0.00 4.57
444 481 6.992715 AGAACATATAATAGAACACCTGCACC 59.007 38.462 0.00 0.00 0.00 5.01
445 482 5.621193 ACATATAATAGAACACCTGCACCC 58.379 41.667 0.00 0.00 0.00 4.61
446 483 5.131977 ACATATAATAGAACACCTGCACCCA 59.868 40.000 0.00 0.00 0.00 4.51
447 484 2.496899 AATAGAACACCTGCACCCAG 57.503 50.000 0.00 0.00 38.85 4.45
455 492 4.748144 CTGCACCCAGGGCCTTCC 62.748 72.222 1.32 0.00 35.38 3.46
457 494 3.015145 GCACCCAGGGCCTTCCTA 61.015 66.667 1.32 0.00 46.12 2.94
458 495 2.386935 GCACCCAGGGCCTTCCTAT 61.387 63.158 1.32 0.00 46.12 2.57
459 496 1.839894 CACCCAGGGCCTTCCTATC 59.160 63.158 1.32 0.00 46.12 2.08
460 497 0.695803 CACCCAGGGCCTTCCTATCT 60.696 60.000 1.32 0.00 46.12 1.98
461 498 0.949582 ACCCAGGGCCTTCCTATCTA 59.050 55.000 1.32 0.00 46.12 1.98
462 499 1.132689 ACCCAGGGCCTTCCTATCTAG 60.133 57.143 1.32 0.00 46.12 2.43
463 500 1.132689 CCCAGGGCCTTCCTATCTAGT 60.133 57.143 1.32 0.00 46.12 2.57
464 501 2.252714 CCAGGGCCTTCCTATCTAGTC 58.747 57.143 1.32 0.00 46.12 2.59
465 502 2.426414 CCAGGGCCTTCCTATCTAGTCA 60.426 54.545 1.32 0.00 46.12 3.41
466 503 3.515562 CAGGGCCTTCCTATCTAGTCAT 58.484 50.000 1.32 0.00 46.12 3.06
467 504 3.513515 CAGGGCCTTCCTATCTAGTCATC 59.486 52.174 1.32 0.00 46.12 2.92
468 505 2.835156 GGGCCTTCCTATCTAGTCATCC 59.165 54.545 0.84 0.00 0.00 3.51
469 506 3.511477 GGCCTTCCTATCTAGTCATCCA 58.489 50.000 0.00 0.00 0.00 3.41
470 507 4.100373 GGCCTTCCTATCTAGTCATCCAT 58.900 47.826 0.00 0.00 0.00 3.41
471 508 4.534103 GGCCTTCCTATCTAGTCATCCATT 59.466 45.833 0.00 0.00 0.00 3.16
472 509 5.337975 GGCCTTCCTATCTAGTCATCCATTC 60.338 48.000 0.00 0.00 0.00 2.67
473 510 5.483583 GCCTTCCTATCTAGTCATCCATTCT 59.516 44.000 0.00 0.00 0.00 2.40
474 511 6.665680 GCCTTCCTATCTAGTCATCCATTCTA 59.334 42.308 0.00 0.00 0.00 2.10
475 512 7.363443 GCCTTCCTATCTAGTCATCCATTCTAC 60.363 44.444 0.00 0.00 0.00 2.59
476 513 7.148154 CCTTCCTATCTAGTCATCCATTCTACG 60.148 44.444 0.00 0.00 0.00 3.51
477 514 5.648526 TCCTATCTAGTCATCCATTCTACGC 59.351 44.000 0.00 0.00 0.00 4.42
478 515 5.416013 CCTATCTAGTCATCCATTCTACGCA 59.584 44.000 0.00 0.00 0.00 5.24
479 516 5.991933 ATCTAGTCATCCATTCTACGCAT 57.008 39.130 0.00 0.00 0.00 4.73
480 517 5.378292 TCTAGTCATCCATTCTACGCATC 57.622 43.478 0.00 0.00 0.00 3.91
481 518 3.018598 AGTCATCCATTCTACGCATCG 57.981 47.619 0.00 0.00 0.00 3.84
482 519 1.457303 GTCATCCATTCTACGCATCGC 59.543 52.381 0.00 0.00 0.00 4.58
493 530 2.399217 GCATCGCGATTCGTGCAA 59.601 55.556 23.50 0.00 41.45 4.08
494 531 1.225991 GCATCGCGATTCGTGCAAA 60.226 52.632 23.50 0.00 41.45 3.68
495 532 1.455908 GCATCGCGATTCGTGCAAAC 61.456 55.000 23.50 1.07 41.45 2.93
496 533 0.179227 CATCGCGATTCGTGCAAACA 60.179 50.000 21.14 0.00 37.28 2.83
497 534 0.179225 ATCGCGATTCGTGCAAACAC 60.179 50.000 17.62 0.00 43.76 3.32
536 573 9.734620 TGTTTCTCTCAGATAAAACATGTTTTG 57.265 29.630 35.69 24.41 42.18 2.44
537 574 9.950680 GTTTCTCTCAGATAAAACATGTTTTGA 57.049 29.630 35.69 26.56 42.18 2.69
540 577 9.342308 TCTCTCAGATAAAACATGTTTTGAAGT 57.658 29.630 35.69 22.68 42.18 3.01
541 578 9.956720 CTCTCAGATAAAACATGTTTTGAAGTT 57.043 29.630 35.69 18.40 42.18 2.66
552 589 7.747888 ACATGTTTTGAAGTTTAAACCTTTGC 58.252 30.769 14.72 0.00 34.21 3.68
553 590 7.389053 ACATGTTTTGAAGTTTAAACCTTTGCA 59.611 29.630 14.72 6.44 34.21 4.08
554 591 7.357951 TGTTTTGAAGTTTAAACCTTTGCAG 57.642 32.000 14.72 0.00 34.21 4.41
555 592 6.128418 TGTTTTGAAGTTTAAACCTTTGCAGC 60.128 34.615 14.72 1.21 34.21 5.25
556 593 3.701241 TGAAGTTTAAACCTTTGCAGCG 58.299 40.909 14.72 0.00 0.00 5.18
557 594 3.129638 TGAAGTTTAAACCTTTGCAGCGT 59.870 39.130 14.72 0.00 0.00 5.07
558 595 3.078594 AGTTTAAACCTTTGCAGCGTG 57.921 42.857 14.72 0.00 0.00 5.34
559 596 2.124122 GTTTAAACCTTTGCAGCGTGG 58.876 47.619 7.12 0.00 0.00 4.94
560 597 0.031449 TTAAACCTTTGCAGCGTGGC 59.969 50.000 0.00 0.00 0.00 5.01
561 598 1.103987 TAAACCTTTGCAGCGTGGCA 61.104 50.000 0.00 0.00 43.19 4.92
567 604 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
568 605 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
569 606 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
570 607 1.656441 CAGCGTGGCAAAGCTTTCT 59.344 52.632 9.23 0.00 39.27 2.52
571 608 0.874390 CAGCGTGGCAAAGCTTTCTA 59.126 50.000 9.23 0.00 39.27 2.10
572 609 1.470098 CAGCGTGGCAAAGCTTTCTAT 59.530 47.619 9.23 0.00 39.27 1.98
573 610 1.740025 AGCGTGGCAAAGCTTTCTATC 59.260 47.619 9.23 0.00 37.97 2.08
574 611 1.740025 GCGTGGCAAAGCTTTCTATCT 59.260 47.619 9.23 0.00 0.00 1.98
575 612 2.936498 GCGTGGCAAAGCTTTCTATCTA 59.064 45.455 9.23 0.00 0.00 1.98
576 613 3.001736 GCGTGGCAAAGCTTTCTATCTAG 59.998 47.826 9.23 0.00 0.00 2.43
577 614 4.433615 CGTGGCAAAGCTTTCTATCTAGA 58.566 43.478 9.23 0.00 0.00 2.43
578 615 4.870426 CGTGGCAAAGCTTTCTATCTAGAA 59.130 41.667 9.23 0.00 40.33 2.10
579 616 5.525378 CGTGGCAAAGCTTTCTATCTAGAAT 59.475 40.000 9.23 0.00 41.52 2.40
580 617 6.292596 CGTGGCAAAGCTTTCTATCTAGAATC 60.293 42.308 9.23 0.00 41.52 2.52
581 618 6.765512 GTGGCAAAGCTTTCTATCTAGAATCT 59.234 38.462 9.23 0.00 41.52 2.40
582 619 7.928706 GTGGCAAAGCTTTCTATCTAGAATCTA 59.071 37.037 9.23 0.00 41.52 1.98
583 620 8.147058 TGGCAAAGCTTTCTATCTAGAATCTAG 58.853 37.037 9.23 10.93 41.52 2.43
584 621 7.602265 GGCAAAGCTTTCTATCTAGAATCTAGG 59.398 40.741 16.47 2.02 41.52 3.02
585 622 8.364142 GCAAAGCTTTCTATCTAGAATCTAGGA 58.636 37.037 16.47 4.32 41.52 2.94
599 636 7.954788 AGAATCTAGGATAAATCTTTCACGC 57.045 36.000 0.00 0.00 0.00 5.34
600 637 7.731054 AGAATCTAGGATAAATCTTTCACGCT 58.269 34.615 0.00 0.00 0.00 5.07
601 638 7.655328 AGAATCTAGGATAAATCTTTCACGCTG 59.345 37.037 0.00 0.00 0.00 5.18
602 639 6.465439 TCTAGGATAAATCTTTCACGCTGA 57.535 37.500 0.00 0.00 0.00 4.26
603 640 6.873997 TCTAGGATAAATCTTTCACGCTGAA 58.126 36.000 0.00 0.00 34.03 3.02
604 641 7.327975 TCTAGGATAAATCTTTCACGCTGAAA 58.672 34.615 11.07 11.07 43.37 2.69
605 642 6.817765 AGGATAAATCTTTCACGCTGAAAA 57.182 33.333 12.17 6.36 44.69 2.29
606 643 7.214467 AGGATAAATCTTTCACGCTGAAAAA 57.786 32.000 12.17 2.93 44.69 1.94
607 644 7.830739 AGGATAAATCTTTCACGCTGAAAAAT 58.169 30.769 12.17 4.73 44.69 1.82
608 645 8.306761 AGGATAAATCTTTCACGCTGAAAAATT 58.693 29.630 12.17 9.21 44.69 1.82
609 646 8.925700 GGATAAATCTTTCACGCTGAAAAATTT 58.074 29.630 19.24 19.24 44.47 1.82
610 647 9.943465 GATAAATCTTTCACGCTGAAAAATTTC 57.057 29.630 19.03 9.60 40.83 2.17
611 648 9.696917 ATAAATCTTTCACGCTGAAAAATTTCT 57.303 25.926 19.03 12.14 40.83 2.52
613 650 8.733857 AATCTTTCACGCTGAAAAATTTCTAG 57.266 30.769 12.17 4.77 44.69 2.43
614 651 6.668323 TCTTTCACGCTGAAAAATTTCTAGG 58.332 36.000 12.17 0.00 44.69 3.02
615 652 6.262273 TCTTTCACGCTGAAAAATTTCTAGGT 59.738 34.615 12.17 0.45 44.69 3.08
616 653 7.442969 TCTTTCACGCTGAAAAATTTCTAGGTA 59.557 33.333 12.17 0.00 44.69 3.08
617 654 7.681939 TTCACGCTGAAAAATTTCTAGGTAT 57.318 32.000 7.36 0.00 38.02 2.73
618 655 8.780846 TTCACGCTGAAAAATTTCTAGGTATA 57.219 30.769 7.36 0.00 38.02 1.47
619 656 8.958119 TCACGCTGAAAAATTTCTAGGTATAT 57.042 30.769 7.36 0.00 38.02 0.86
620 657 9.391006 TCACGCTGAAAAATTTCTAGGTATATT 57.609 29.630 7.36 0.00 38.02 1.28
715 752 8.364142 TCCTAGATTCTAGATAGAAAGCTTTGC 58.636 37.037 18.30 8.41 44.63 3.68
716 753 7.602265 CCTAGATTCTAGATAGAAAGCTTTGCC 59.398 40.741 18.30 2.73 44.63 4.52
717 754 6.893583 AGATTCTAGATAGAAAGCTTTGCCA 58.106 36.000 18.30 1.15 44.63 4.92
718 755 6.765512 AGATTCTAGATAGAAAGCTTTGCCAC 59.234 38.462 18.30 1.49 44.63 5.01
719 756 4.433615 TCTAGATAGAAAGCTTTGCCACG 58.566 43.478 18.30 0.00 0.00 4.94
720 757 1.740025 AGATAGAAAGCTTTGCCACGC 59.260 47.619 18.30 0.25 0.00 5.34
721 758 1.740025 GATAGAAAGCTTTGCCACGCT 59.260 47.619 18.30 8.71 38.30 5.07
722 759 0.874390 TAGAAAGCTTTGCCACGCTG 59.126 50.000 18.30 0.00 36.45 5.18
723 760 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
724 761 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
730 767 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
731 768 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
732 769 1.950630 GCCACGCTGCAAAGGTTTG 60.951 57.895 0.00 0.00 41.03 2.93
733 770 1.732917 CCACGCTGCAAAGGTTTGA 59.267 52.632 6.63 0.00 40.55 2.69
734 771 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69
735 772 1.480205 CACGCTGCAAAGGTTTGAAG 58.520 50.000 6.63 6.36 44.97 3.02
736 773 1.102978 ACGCTGCAAAGGTTTGAAGT 58.897 45.000 11.37 1.01 44.19 3.01
737 774 1.476488 ACGCTGCAAAGGTTTGAAGTT 59.524 42.857 11.37 0.00 44.19 2.66
738 775 2.685897 ACGCTGCAAAGGTTTGAAGTTA 59.314 40.909 11.37 0.00 44.19 2.24
739 776 3.129638 ACGCTGCAAAGGTTTGAAGTTAA 59.870 39.130 11.37 0.00 44.19 2.01
740 777 3.730715 CGCTGCAAAGGTTTGAAGTTAAG 59.269 43.478 11.37 0.00 44.19 1.85
741 778 4.497340 CGCTGCAAAGGTTTGAAGTTAAGA 60.497 41.667 11.37 0.00 44.19 2.10
742 779 4.740205 GCTGCAAAGGTTTGAAGTTAAGAC 59.260 41.667 11.37 0.00 44.19 3.01
743 780 5.678616 GCTGCAAAGGTTTGAAGTTAAGACA 60.679 40.000 11.37 0.00 44.19 3.41
744 781 6.463995 TGCAAAGGTTTGAAGTTAAGACAT 57.536 33.333 6.63 0.00 40.55 3.06
745 782 6.272318 TGCAAAGGTTTGAAGTTAAGACATG 58.728 36.000 6.63 0.00 40.55 3.21
746 783 6.127479 TGCAAAGGTTTGAAGTTAAGACATGT 60.127 34.615 0.00 0.00 40.55 3.21
747 784 6.756542 GCAAAGGTTTGAAGTTAAGACATGTT 59.243 34.615 0.00 0.00 40.55 2.71
748 785 7.043391 GCAAAGGTTTGAAGTTAAGACATGTTC 60.043 37.037 0.00 0.00 40.55 3.18
749 786 7.881775 AAGGTTTGAAGTTAAGACATGTTCT 57.118 32.000 0.00 0.00 35.32 3.01
750 787 8.974060 AAGGTTTGAAGTTAAGACATGTTCTA 57.026 30.769 0.00 0.00 32.51 2.10
751 788 9.574516 AAGGTTTGAAGTTAAGACATGTTCTAT 57.425 29.630 0.00 0.00 32.51 1.98
752 789 9.003658 AGGTTTGAAGTTAAGACATGTTCTATG 57.996 33.333 0.00 0.00 32.51 2.23
753 790 8.784043 GGTTTGAAGTTAAGACATGTTCTATGT 58.216 33.333 0.00 0.00 32.51 2.29
754 791 9.599322 GTTTGAAGTTAAGACATGTTCTATGTG 57.401 33.333 0.00 0.00 32.51 3.21
755 792 9.554395 TTTGAAGTTAAGACATGTTCTATGTGA 57.446 29.630 0.00 0.00 32.51 3.58
756 793 8.763049 TGAAGTTAAGACATGTTCTATGTGAG 57.237 34.615 0.00 0.00 32.51 3.51
757 794 8.585018 TGAAGTTAAGACATGTTCTATGTGAGA 58.415 33.333 0.00 0.00 32.51 3.27
758 795 8.994429 AAGTTAAGACATGTTCTATGTGAGAG 57.006 34.615 0.00 0.00 34.93 3.20
759 796 8.354711 AGTTAAGACATGTTCTATGTGAGAGA 57.645 34.615 0.00 0.00 34.93 3.10
760 797 8.807118 AGTTAAGACATGTTCTATGTGAGAGAA 58.193 33.333 0.00 0.00 34.93 2.87
761 798 9.424319 GTTAAGACATGTTCTATGTGAGAGAAA 57.576 33.333 0.00 0.00 34.78 2.52
762 799 7.897575 AAGACATGTTCTATGTGAGAGAAAC 57.102 36.000 0.00 0.00 34.78 2.78
763 800 6.997655 AGACATGTTCTATGTGAGAGAAACA 58.002 36.000 0.00 0.00 34.78 2.83
764 801 7.445121 AGACATGTTCTATGTGAGAGAAACAA 58.555 34.615 0.00 0.00 34.78 2.83
765 802 7.933577 AGACATGTTCTATGTGAGAGAAACAAA 59.066 33.333 0.00 0.00 34.78 2.83
766 803 8.450578 ACATGTTCTATGTGAGAGAAACAAAA 57.549 30.769 0.00 0.00 34.78 2.44
767 804 8.902806 ACATGTTCTATGTGAGAGAAACAAAAA 58.097 29.630 0.00 0.00 34.78 1.94
809 846 8.970691 ATAAAGTTAATTGTGTTGCACAGATC 57.029 30.769 2.17 0.00 45.39 2.75
810 847 6.639632 AAGTTAATTGTGTTGCACAGATCT 57.360 33.333 2.17 0.00 45.39 2.75
811 848 6.639632 AGTTAATTGTGTTGCACAGATCTT 57.360 33.333 0.00 0.00 45.39 2.40
812 849 7.744087 AGTTAATTGTGTTGCACAGATCTTA 57.256 32.000 0.00 0.00 45.39 2.10
813 850 8.165239 AGTTAATTGTGTTGCACAGATCTTAA 57.835 30.769 0.00 4.14 45.39 1.85
814 851 8.629158 AGTTAATTGTGTTGCACAGATCTTAAA 58.371 29.630 0.00 0.00 45.39 1.52
815 852 8.905702 GTTAATTGTGTTGCACAGATCTTAAAG 58.094 33.333 0.00 0.00 45.39 1.85
816 853 4.488126 TGTGTTGCACAGATCTTAAAGC 57.512 40.909 0.00 0.00 39.62 3.51
817 854 3.882288 TGTGTTGCACAGATCTTAAAGCA 59.118 39.130 0.00 0.00 39.62 3.91
818 855 4.337836 TGTGTTGCACAGATCTTAAAGCAA 59.662 37.500 13.71 13.71 39.62 3.91
819 856 5.009911 TGTGTTGCACAGATCTTAAAGCAAT 59.990 36.000 18.21 0.00 42.90 3.56
820 857 6.206438 TGTGTTGCACAGATCTTAAAGCAATA 59.794 34.615 18.21 14.67 42.90 1.90
821 858 7.094248 TGTGTTGCACAGATCTTAAAGCAATAT 60.094 33.333 18.21 0.00 42.90 1.28
822 859 7.756722 GTGTTGCACAGATCTTAAAGCAATATT 59.243 33.333 18.21 0.00 42.90 1.28
823 860 8.306038 TGTTGCACAGATCTTAAAGCAATATTT 58.694 29.630 18.21 0.00 42.90 1.40
824 861 8.589629 GTTGCACAGATCTTAAAGCAATATTTG 58.410 33.333 18.21 0.00 42.90 2.32
825 862 8.054152 TGCACAGATCTTAAAGCAATATTTGA 57.946 30.769 0.00 0.00 0.00 2.69
826 863 7.970061 TGCACAGATCTTAAAGCAATATTTGAC 59.030 33.333 0.00 0.00 0.00 3.18
827 864 7.970061 GCACAGATCTTAAAGCAATATTTGACA 59.030 33.333 0.00 0.00 0.00 3.58
828 865 9.499585 CACAGATCTTAAAGCAATATTTGACAG 57.500 33.333 0.00 0.00 0.00 3.51
829 866 8.186821 ACAGATCTTAAAGCAATATTTGACAGC 58.813 33.333 0.00 0.00 0.00 4.40
830 867 7.646922 CAGATCTTAAAGCAATATTTGACAGCC 59.353 37.037 0.00 0.00 0.00 4.85
831 868 6.832520 TCTTAAAGCAATATTTGACAGCCA 57.167 33.333 0.00 0.00 0.00 4.75
832 869 6.855836 TCTTAAAGCAATATTTGACAGCCAG 58.144 36.000 0.00 0.00 0.00 4.85
833 870 4.460948 AAAGCAATATTTGACAGCCAGG 57.539 40.909 0.00 0.00 0.00 4.45
834 871 3.370840 AGCAATATTTGACAGCCAGGA 57.629 42.857 0.00 0.00 0.00 3.86
835 872 3.907221 AGCAATATTTGACAGCCAGGAT 58.093 40.909 0.00 0.00 0.00 3.24
836 873 5.052693 AGCAATATTTGACAGCCAGGATA 57.947 39.130 0.00 0.00 0.00 2.59
837 874 5.448654 AGCAATATTTGACAGCCAGGATAA 58.551 37.500 0.00 0.00 0.00 1.75
838 875 5.300286 AGCAATATTTGACAGCCAGGATAAC 59.700 40.000 0.00 0.00 0.00 1.89
839 876 5.067674 GCAATATTTGACAGCCAGGATAACA 59.932 40.000 0.00 0.00 0.00 2.41
840 877 6.732154 CAATATTTGACAGCCAGGATAACAG 58.268 40.000 0.00 0.00 0.00 3.16
841 878 2.787473 TTGACAGCCAGGATAACAGG 57.213 50.000 0.00 0.00 0.00 4.00
842 879 0.911769 TGACAGCCAGGATAACAGGG 59.088 55.000 0.00 0.00 0.00 4.45
843 880 0.464554 GACAGCCAGGATAACAGGGC 60.465 60.000 0.00 0.00 46.77 5.19
845 882 2.195956 GCCAGGATAACAGGGCCC 59.804 66.667 16.46 16.46 40.55 5.80
846 883 2.510906 CCAGGATAACAGGGCCCG 59.489 66.667 18.44 14.39 0.00 6.13
847 884 2.510906 CAGGATAACAGGGCCCGG 59.489 66.667 21.67 21.67 0.00 5.73
848 885 2.070039 CAGGATAACAGGGCCCGGA 61.070 63.158 30.18 7.46 0.00 5.14
849 886 1.073706 AGGATAACAGGGCCCGGAT 60.074 57.895 30.18 20.09 0.00 4.18
850 887 1.073199 GGATAACAGGGCCCGGATG 59.927 63.158 30.18 18.73 0.00 3.51
851 888 1.600916 GATAACAGGGCCCGGATGC 60.601 63.158 30.18 9.90 0.00 3.91
852 889 2.337879 GATAACAGGGCCCGGATGCA 62.338 60.000 30.18 10.26 0.00 3.96
853 890 2.343475 ATAACAGGGCCCGGATGCAG 62.343 60.000 30.18 10.24 0.00 4.41
855 892 3.882326 CAGGGCCCGGATGCAGAT 61.882 66.667 18.42 0.00 0.00 2.90
856 893 3.882326 AGGGCCCGGATGCAGATG 61.882 66.667 18.44 0.00 0.00 2.90
857 894 4.195334 GGGCCCGGATGCAGATGT 62.195 66.667 5.69 0.00 0.00 3.06
858 895 2.124151 GGCCCGGATGCAGATGTT 60.124 61.111 0.73 0.00 0.00 2.71
859 896 1.754234 GGCCCGGATGCAGATGTTT 60.754 57.895 0.73 0.00 0.00 2.83
860 897 1.322538 GGCCCGGATGCAGATGTTTT 61.323 55.000 0.73 0.00 0.00 2.43
861 898 1.388547 GCCCGGATGCAGATGTTTTA 58.611 50.000 0.73 0.00 0.00 1.52
862 899 1.748493 GCCCGGATGCAGATGTTTTAA 59.252 47.619 0.73 0.00 0.00 1.52
863 900 2.165437 GCCCGGATGCAGATGTTTTAAA 59.835 45.455 0.73 0.00 0.00 1.52
864 901 3.367910 GCCCGGATGCAGATGTTTTAAAA 60.368 43.478 0.73 0.00 0.00 1.52
865 902 4.815269 CCCGGATGCAGATGTTTTAAAAA 58.185 39.130 0.73 0.00 0.00 1.94
866 903 5.418676 CCCGGATGCAGATGTTTTAAAAAT 58.581 37.500 0.73 0.00 0.00 1.82
867 904 5.874261 CCCGGATGCAGATGTTTTAAAAATT 59.126 36.000 0.73 0.00 0.00 1.82
868 905 6.035975 CCCGGATGCAGATGTTTTAAAAATTC 59.964 38.462 0.73 3.02 0.00 2.17
869 906 6.589523 CCGGATGCAGATGTTTTAAAAATTCA 59.410 34.615 1.31 0.00 0.00 2.57
870 907 7.411804 CCGGATGCAGATGTTTTAAAAATTCAC 60.412 37.037 1.31 1.06 0.00 3.18
871 908 7.447430 GGATGCAGATGTTTTAAAAATTCACG 58.553 34.615 1.31 0.63 0.00 4.35
872 909 7.116233 GGATGCAGATGTTTTAAAAATTCACGT 59.884 33.333 1.31 1.65 0.00 4.49
873 910 7.388290 TGCAGATGTTTTAAAAATTCACGTC 57.612 32.000 1.31 1.92 0.00 4.34
874 911 6.419413 TGCAGATGTTTTAAAAATTCACGTCC 59.581 34.615 1.31 0.00 0.00 4.79
875 912 6.128929 GCAGATGTTTTAAAAATTCACGTCCC 60.129 38.462 1.31 0.00 0.00 4.46
876 913 6.087555 CAGATGTTTTAAAAATTCACGTCCCG 59.912 38.462 1.31 0.00 0.00 5.14
877 914 5.246145 TGTTTTAAAAATTCACGTCCCGT 57.754 34.783 1.31 0.00 42.36 5.28
878 915 6.369059 TGTTTTAAAAATTCACGTCCCGTA 57.631 33.333 1.31 0.00 38.32 4.02
879 916 6.789262 TGTTTTAAAAATTCACGTCCCGTAA 58.211 32.000 1.31 0.00 38.32 3.18
880 917 6.690528 TGTTTTAAAAATTCACGTCCCGTAAC 59.309 34.615 1.31 0.00 38.32 2.50
882 919 2.437200 AAATTCACGTCCCGTAACGA 57.563 45.000 12.97 0.00 45.37 3.85
883 920 2.437200 AATTCACGTCCCGTAACGAA 57.563 45.000 12.97 0.00 45.37 3.85
884 921 2.437200 ATTCACGTCCCGTAACGAAA 57.563 45.000 12.97 7.54 45.37 3.46
885 922 2.215907 TTCACGTCCCGTAACGAAAA 57.784 45.000 12.97 4.73 45.37 2.29
886 923 1.486439 TCACGTCCCGTAACGAAAAC 58.514 50.000 12.97 0.00 45.37 2.43
887 924 1.202348 TCACGTCCCGTAACGAAAACA 60.202 47.619 12.97 0.00 45.37 2.83
888 925 1.794116 CACGTCCCGTAACGAAAACAT 59.206 47.619 12.97 0.00 45.37 2.71
889 926 2.985809 CACGTCCCGTAACGAAAACATA 59.014 45.455 12.97 0.00 45.37 2.29
890 927 3.613737 CACGTCCCGTAACGAAAACATAT 59.386 43.478 12.97 0.00 45.37 1.78
891 928 4.797868 CACGTCCCGTAACGAAAACATATA 59.202 41.667 12.97 0.00 45.37 0.86
892 929 5.288232 CACGTCCCGTAACGAAAACATATAA 59.712 40.000 12.97 0.00 45.37 0.98
893 930 6.019640 CACGTCCCGTAACGAAAACATATAAT 60.020 38.462 12.97 0.00 45.37 1.28
894 931 7.167302 CACGTCCCGTAACGAAAACATATAATA 59.833 37.037 12.97 0.00 45.37 0.98
895 932 7.379529 ACGTCCCGTAACGAAAACATATAATAG 59.620 37.037 12.97 0.00 45.37 1.73
896 933 7.591057 CGTCCCGTAACGAAAACATATAATAGA 59.409 37.037 0.91 0.00 45.37 1.98
897 934 9.248291 GTCCCGTAACGAAAACATATAATAGAA 57.752 33.333 0.00 0.00 0.00 2.10
898 935 9.814899 TCCCGTAACGAAAACATATAATAGAAA 57.185 29.630 0.00 0.00 0.00 2.52
899 936 9.853921 CCCGTAACGAAAACATATAATAGAAAC 57.146 33.333 0.00 0.00 0.00 2.78
900 937 9.853921 CCGTAACGAAAACATATAATAGAAACC 57.146 33.333 0.00 0.00 0.00 3.27
901 938 9.853921 CGTAACGAAAACATATAATAGAAACCC 57.146 33.333 0.00 0.00 0.00 4.11
906 943 9.511144 CGAAAACATATAATAGAAACCCAAACC 57.489 33.333 0.00 0.00 0.00 3.27
907 944 9.811995 GAAAACATATAATAGAAACCCAAACCC 57.188 33.333 0.00 0.00 0.00 4.11
908 945 9.555411 AAAACATATAATAGAAACCCAAACCCT 57.445 29.630 0.00 0.00 0.00 4.34
913 950 7.966339 ATAATAGAAACCCAAACCCTAAACC 57.034 36.000 0.00 0.00 0.00 3.27
914 951 2.966915 AGAAACCCAAACCCTAAACCC 58.033 47.619 0.00 0.00 0.00 4.11
915 952 2.520980 AGAAACCCAAACCCTAAACCCT 59.479 45.455 0.00 0.00 0.00 4.34
916 953 3.728456 AGAAACCCAAACCCTAAACCCTA 59.272 43.478 0.00 0.00 0.00 3.53
917 954 4.170449 AGAAACCCAAACCCTAAACCCTAA 59.830 41.667 0.00 0.00 0.00 2.69
918 955 4.556225 AACCCAAACCCTAAACCCTAAA 57.444 40.909 0.00 0.00 0.00 1.85
919 956 3.848303 ACCCAAACCCTAAACCCTAAAC 58.152 45.455 0.00 0.00 0.00 2.01
920 957 3.207093 ACCCAAACCCTAAACCCTAAACA 59.793 43.478 0.00 0.00 0.00 2.83
921 958 3.575256 CCCAAACCCTAAACCCTAAACAC 59.425 47.826 0.00 0.00 0.00 3.32
922 959 3.575256 CCAAACCCTAAACCCTAAACACC 59.425 47.826 0.00 0.00 0.00 4.16
923 960 3.530928 AACCCTAAACCCTAAACACCC 57.469 47.619 0.00 0.00 0.00 4.61
949 991 4.202264 ACCTCGTAACCATCATCAGAATCC 60.202 45.833 0.00 0.00 0.00 3.01
1082 1142 1.950954 GCCAAAGAAGCACCTCTACCC 60.951 57.143 0.00 0.00 0.00 3.69
1358 1440 1.275291 ACCGGTTCAACTCATCGACAT 59.725 47.619 0.00 0.00 0.00 3.06
1515 1600 1.600916 GTCCTGGAAAAGCGTGCCT 60.601 57.895 0.00 0.00 0.00 4.75
1594 1680 2.653726 GGCACACCATATTCATGTCCA 58.346 47.619 0.00 0.00 35.26 4.02
1652 1738 1.827969 CTTCTCCTTCGACACCAGGAT 59.172 52.381 4.06 0.00 38.58 3.24
1793 1879 2.979676 CTCCCGCAGCAGCACAAA 60.980 61.111 0.82 0.00 42.27 2.83
1849 1935 1.752198 CTGTTCCACAAGGACCCGA 59.248 57.895 0.00 0.00 45.73 5.14
1924 2011 0.546122 TTGCCTTGTGGAGTCTGTGT 59.454 50.000 0.00 0.00 34.57 3.72
2055 2144 1.523758 GCCACCACACTAACTCCTTG 58.476 55.000 0.00 0.00 0.00 3.61
2079 3397 5.126384 GGTAGTGTCTAAGCATCTTCAGACT 59.874 44.000 0.00 0.00 38.56 3.24
2311 3638 3.813166 AGCAGCAAACACGTAACAATAGT 59.187 39.130 0.00 0.00 0.00 2.12
2329 3656 8.539770 ACAATAGTTGTAGAAACAGACATGAG 57.460 34.615 0.00 0.00 43.27 2.90
2414 3741 1.137614 GACGATCTGCTGCTGACGA 59.862 57.895 25.24 9.91 0.00 4.20
3097 4458 3.308188 GGGACTAAACTTAGCACCACCAT 60.308 47.826 12.31 0.00 34.44 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.084546 CCCGTGGAAAATCTGGAGTTC 58.915 52.381 0.00 0.00 0.00 3.01
124 127 2.618709 CCCAATCAGGAGTTAAATCGGC 59.381 50.000 0.00 0.00 41.22 5.54
143 146 4.062032 GTTGGGGAAGGGGAGCCC 62.062 72.222 0.00 0.00 45.90 5.19
153 156 0.253020 GAGGGAACTAGGGTTGGGGA 60.253 60.000 0.00 0.00 44.43 4.81
170 173 1.764054 CCTACAGGGGAGCCAGGAG 60.764 68.421 0.00 0.00 0.00 3.69
182 185 0.806102 CATGACGAACGCCCCTACAG 60.806 60.000 0.00 0.00 0.00 2.74
186 189 3.319198 ACCATGACGAACGCCCCT 61.319 61.111 0.00 0.00 0.00 4.79
223 232 1.831736 GCAAGGGCAGACTACCTAGAA 59.168 52.381 0.00 0.00 40.72 2.10
232 249 1.202806 TGCATATAGGCAAGGGCAGAC 60.203 52.381 10.09 0.00 41.65 3.51
411 448 9.655769 GTGTTCTATTATATGTTCTCGTTACGA 57.344 33.333 7.39 7.39 0.00 3.43
412 449 8.899776 GGTGTTCTATTATATGTTCTCGTTACG 58.100 37.037 0.00 0.00 0.00 3.18
413 450 9.962783 AGGTGTTCTATTATATGTTCTCGTTAC 57.037 33.333 0.00 0.00 0.00 2.50
414 451 9.961265 CAGGTGTTCTATTATATGTTCTCGTTA 57.039 33.333 0.00 0.00 0.00 3.18
415 452 7.438459 GCAGGTGTTCTATTATATGTTCTCGTT 59.562 37.037 0.00 0.00 0.00 3.85
416 453 6.924060 GCAGGTGTTCTATTATATGTTCTCGT 59.076 38.462 0.00 0.00 0.00 4.18
417 454 6.923508 TGCAGGTGTTCTATTATATGTTCTCG 59.076 38.462 0.00 0.00 0.00 4.04
418 455 7.171678 GGTGCAGGTGTTCTATTATATGTTCTC 59.828 40.741 0.00 0.00 0.00 2.87
419 456 6.992715 GGTGCAGGTGTTCTATTATATGTTCT 59.007 38.462 0.00 0.00 0.00 3.01
420 457 6.204882 GGGTGCAGGTGTTCTATTATATGTTC 59.795 42.308 0.00 0.00 0.00 3.18
421 458 6.062095 GGGTGCAGGTGTTCTATTATATGTT 58.938 40.000 0.00 0.00 0.00 2.71
422 459 5.131977 TGGGTGCAGGTGTTCTATTATATGT 59.868 40.000 0.00 0.00 0.00 2.29
423 460 5.620206 TGGGTGCAGGTGTTCTATTATATG 58.380 41.667 0.00 0.00 0.00 1.78
424 461 5.221925 CCTGGGTGCAGGTGTTCTATTATAT 60.222 44.000 0.00 0.00 37.57 0.86
425 462 4.102524 CCTGGGTGCAGGTGTTCTATTATA 59.897 45.833 0.00 0.00 37.57 0.98
426 463 3.117888 CCTGGGTGCAGGTGTTCTATTAT 60.118 47.826 0.00 0.00 37.57 1.28
427 464 2.238646 CCTGGGTGCAGGTGTTCTATTA 59.761 50.000 0.00 0.00 37.57 0.98
428 465 1.004745 CCTGGGTGCAGGTGTTCTATT 59.995 52.381 0.00 0.00 37.57 1.73
429 466 0.620556 CCTGGGTGCAGGTGTTCTAT 59.379 55.000 0.00 0.00 37.57 1.98
430 467 1.488705 CCCTGGGTGCAGGTGTTCTA 61.489 60.000 3.97 0.00 40.69 2.10
431 468 2.833913 CCCTGGGTGCAGGTGTTCT 61.834 63.158 3.97 0.00 40.69 3.01
432 469 2.282462 CCCTGGGTGCAGGTGTTC 60.282 66.667 3.97 0.00 40.69 3.18
433 470 4.603535 GCCCTGGGTGCAGGTGTT 62.604 66.667 15.56 0.00 40.69 3.32
437 474 4.748144 GAAGGCCCTGGGTGCAGG 62.748 72.222 15.56 0.00 41.92 4.85
438 475 4.748144 GGAAGGCCCTGGGTGCAG 62.748 72.222 15.56 0.00 0.00 4.41
447 484 2.835156 GGATGACTAGATAGGAAGGCCC 59.165 54.545 0.00 0.00 33.31 5.80
448 485 3.511477 TGGATGACTAGATAGGAAGGCC 58.489 50.000 0.00 0.00 0.00 5.19
449 486 5.483583 AGAATGGATGACTAGATAGGAAGGC 59.516 44.000 0.00 0.00 0.00 4.35
450 487 7.148154 CGTAGAATGGATGACTAGATAGGAAGG 60.148 44.444 0.00 0.00 0.00 3.46
451 488 7.627513 GCGTAGAATGGATGACTAGATAGGAAG 60.628 44.444 0.00 0.00 0.00 3.46
452 489 6.151312 GCGTAGAATGGATGACTAGATAGGAA 59.849 42.308 0.00 0.00 0.00 3.36
453 490 5.648526 GCGTAGAATGGATGACTAGATAGGA 59.351 44.000 0.00 0.00 0.00 2.94
454 491 5.416013 TGCGTAGAATGGATGACTAGATAGG 59.584 44.000 0.00 0.00 0.00 2.57
455 492 6.502136 TGCGTAGAATGGATGACTAGATAG 57.498 41.667 0.00 0.00 0.00 2.08
456 493 6.183360 CGATGCGTAGAATGGATGACTAGATA 60.183 42.308 0.00 0.00 0.00 1.98
457 494 5.392487 CGATGCGTAGAATGGATGACTAGAT 60.392 44.000 0.00 0.00 0.00 1.98
458 495 4.083271 CGATGCGTAGAATGGATGACTAGA 60.083 45.833 0.00 0.00 0.00 2.43
459 496 4.162072 CGATGCGTAGAATGGATGACTAG 58.838 47.826 0.00 0.00 0.00 2.57
460 497 3.611766 GCGATGCGTAGAATGGATGACTA 60.612 47.826 0.00 0.00 0.00 2.59
461 498 2.864097 GCGATGCGTAGAATGGATGACT 60.864 50.000 0.00 0.00 0.00 3.41
462 499 1.457303 GCGATGCGTAGAATGGATGAC 59.543 52.381 0.00 0.00 0.00 3.06
463 500 1.783284 GCGATGCGTAGAATGGATGA 58.217 50.000 0.00 0.00 0.00 2.92
476 513 1.225991 TTTGCACGAATCGCGATGC 60.226 52.632 24.47 23.10 44.57 3.91
477 514 0.179227 TGTTTGCACGAATCGCGATG 60.179 50.000 24.47 13.82 44.57 3.84
478 515 0.179225 GTGTTTGCACGAATCGCGAT 60.179 50.000 17.62 17.62 44.57 4.58
479 516 1.203065 GTGTTTGCACGAATCGCGA 59.797 52.632 13.09 13.09 44.57 5.87
510 547 9.734620 CAAAACATGTTTTATCTGAGAGAAACA 57.265 29.630 30.65 21.32 43.56 2.83
511 548 9.950680 TCAAAACATGTTTTATCTGAGAGAAAC 57.049 29.630 30.65 9.09 40.45 2.78
514 551 9.342308 ACTTCAAAACATGTTTTATCTGAGAGA 57.658 29.630 30.65 19.90 40.45 3.10
515 552 9.956720 AACTTCAAAACATGTTTTATCTGAGAG 57.043 29.630 30.65 23.20 40.45 3.20
526 563 8.233868 GCAAAGGTTTAAACTTCAAAACATGTT 58.766 29.630 17.50 4.92 37.33 2.71
527 564 7.389053 TGCAAAGGTTTAAACTTCAAAACATGT 59.611 29.630 17.50 0.00 37.33 3.21
528 565 7.746929 TGCAAAGGTTTAAACTTCAAAACATG 58.253 30.769 17.50 0.00 37.33 3.21
529 566 7.413988 GCTGCAAAGGTTTAAACTTCAAAACAT 60.414 33.333 17.50 0.00 37.33 2.71
530 567 6.128418 GCTGCAAAGGTTTAAACTTCAAAACA 60.128 34.615 17.50 7.36 37.33 2.83
531 568 6.247903 GCTGCAAAGGTTTAAACTTCAAAAC 58.752 36.000 17.50 0.00 35.34 2.43
532 569 5.062809 CGCTGCAAAGGTTTAAACTTCAAAA 59.937 36.000 17.50 0.69 0.00 2.44
533 570 4.564769 CGCTGCAAAGGTTTAAACTTCAAA 59.435 37.500 17.50 0.22 0.00 2.69
534 571 4.109050 CGCTGCAAAGGTTTAAACTTCAA 58.891 39.130 17.50 0.00 0.00 2.69
535 572 3.129638 ACGCTGCAAAGGTTTAAACTTCA 59.870 39.130 17.50 4.52 0.00 3.02
536 573 3.485743 CACGCTGCAAAGGTTTAAACTTC 59.514 43.478 17.50 2.59 0.00 3.01
537 574 3.443976 CACGCTGCAAAGGTTTAAACTT 58.556 40.909 17.50 7.76 0.00 2.66
538 575 2.223711 CCACGCTGCAAAGGTTTAAACT 60.224 45.455 17.50 1.78 0.00 2.66
539 576 2.124122 CCACGCTGCAAAGGTTTAAAC 58.876 47.619 9.98 9.98 0.00 2.01
540 577 1.537135 GCCACGCTGCAAAGGTTTAAA 60.537 47.619 0.00 0.00 0.00 1.52
541 578 0.031449 GCCACGCTGCAAAGGTTTAA 59.969 50.000 0.00 0.00 0.00 1.52
542 579 1.103987 TGCCACGCTGCAAAGGTTTA 61.104 50.000 0.00 0.00 38.56 2.01
543 580 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
544 581 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
550 587 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
551 588 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
552 589 0.874390 TAGAAAGCTTTGCCACGCTG 59.126 50.000 18.30 0.00 36.45 5.18
553 590 1.740025 GATAGAAAGCTTTGCCACGCT 59.260 47.619 18.30 8.71 38.30 5.07
554 591 1.740025 AGATAGAAAGCTTTGCCACGC 59.260 47.619 18.30 0.25 0.00 5.34
555 592 4.433615 TCTAGATAGAAAGCTTTGCCACG 58.566 43.478 18.30 0.00 0.00 4.94
556 593 6.765512 AGATTCTAGATAGAAAGCTTTGCCAC 59.234 38.462 18.30 1.49 44.63 5.01
557 594 6.893583 AGATTCTAGATAGAAAGCTTTGCCA 58.106 36.000 18.30 1.15 44.63 4.92
558 595 7.602265 CCTAGATTCTAGATAGAAAGCTTTGCC 59.398 40.741 18.30 2.73 44.63 4.52
559 596 8.364142 TCCTAGATTCTAGATAGAAAGCTTTGC 58.636 37.037 18.30 8.41 44.63 3.68
573 610 9.134734 GCGTGAAAGATTTATCCTAGATTCTAG 57.865 37.037 12.94 12.94 0.00 2.43
574 611 8.861086 AGCGTGAAAGATTTATCCTAGATTCTA 58.139 33.333 0.00 0.00 0.00 2.10
575 612 7.655328 CAGCGTGAAAGATTTATCCTAGATTCT 59.345 37.037 0.00 0.00 0.00 2.40
576 613 7.653713 TCAGCGTGAAAGATTTATCCTAGATTC 59.346 37.037 0.00 0.00 0.00 2.52
577 614 7.500992 TCAGCGTGAAAGATTTATCCTAGATT 58.499 34.615 0.00 0.00 0.00 2.40
578 615 7.055667 TCAGCGTGAAAGATTTATCCTAGAT 57.944 36.000 0.00 0.00 0.00 1.98
579 616 6.465439 TCAGCGTGAAAGATTTATCCTAGA 57.535 37.500 0.00 0.00 0.00 2.43
580 617 7.539712 TTTCAGCGTGAAAGATTTATCCTAG 57.460 36.000 8.47 0.00 41.02 3.02
581 618 7.915293 TTTTCAGCGTGAAAGATTTATCCTA 57.085 32.000 11.25 0.00 45.77 2.94
582 619 6.817765 TTTTCAGCGTGAAAGATTTATCCT 57.182 33.333 11.25 0.00 45.77 3.24
583 620 8.466086 AATTTTTCAGCGTGAAAGATTTATCC 57.534 30.769 16.29 0.00 43.94 2.59
588 625 7.809806 CCTAGAAATTTTTCAGCGTGAAAGATT 59.190 33.333 16.29 16.29 46.47 2.40
589 626 7.040409 ACCTAGAAATTTTTCAGCGTGAAAGAT 60.040 33.333 11.25 10.21 45.77 2.40
590 627 6.262273 ACCTAGAAATTTTTCAGCGTGAAAGA 59.738 34.615 11.25 8.78 45.77 2.52
591 628 6.438763 ACCTAGAAATTTTTCAGCGTGAAAG 58.561 36.000 11.25 2.99 45.77 2.62
592 629 6.385649 ACCTAGAAATTTTTCAGCGTGAAA 57.614 33.333 5.88 8.47 43.84 2.69
593 630 7.681939 ATACCTAGAAATTTTTCAGCGTGAA 57.318 32.000 5.88 0.00 39.61 3.18
594 631 8.958119 ATATACCTAGAAATTTTTCAGCGTGA 57.042 30.769 5.88 0.00 39.61 4.35
689 726 8.364142 GCAAAGCTTTCTATCTAGAATCTAGGA 58.636 37.037 16.47 4.32 41.52 2.94
690 727 7.602265 GGCAAAGCTTTCTATCTAGAATCTAGG 59.398 40.741 16.47 2.02 41.52 3.02
691 728 8.147058 TGGCAAAGCTTTCTATCTAGAATCTAG 58.853 37.037 9.23 10.93 41.52 2.43
692 729 7.928706 GTGGCAAAGCTTTCTATCTAGAATCTA 59.071 37.037 9.23 0.00 41.52 1.98
693 730 6.765512 GTGGCAAAGCTTTCTATCTAGAATCT 59.234 38.462 9.23 0.00 41.52 2.40
694 731 6.292596 CGTGGCAAAGCTTTCTATCTAGAATC 60.293 42.308 9.23 0.00 41.52 2.52
695 732 5.525378 CGTGGCAAAGCTTTCTATCTAGAAT 59.475 40.000 9.23 0.00 41.52 2.40
696 733 4.870426 CGTGGCAAAGCTTTCTATCTAGAA 59.130 41.667 9.23 0.00 40.33 2.10
697 734 4.433615 CGTGGCAAAGCTTTCTATCTAGA 58.566 43.478 9.23 0.00 0.00 2.43
698 735 3.001736 GCGTGGCAAAGCTTTCTATCTAG 59.998 47.826 9.23 0.00 0.00 2.43
699 736 2.936498 GCGTGGCAAAGCTTTCTATCTA 59.064 45.455 9.23 0.00 0.00 1.98
700 737 1.740025 GCGTGGCAAAGCTTTCTATCT 59.260 47.619 9.23 0.00 0.00 1.98
701 738 1.740025 AGCGTGGCAAAGCTTTCTATC 59.260 47.619 9.23 0.00 37.97 2.08
702 739 1.470098 CAGCGTGGCAAAGCTTTCTAT 59.530 47.619 9.23 0.00 39.27 1.98
703 740 0.874390 CAGCGTGGCAAAGCTTTCTA 59.126 50.000 9.23 0.00 39.27 2.10
704 741 1.656441 CAGCGTGGCAAAGCTTTCT 59.344 52.632 9.23 0.00 39.27 2.52
705 742 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
706 743 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
707 744 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
713 750 2.422231 AAACCTTTGCAGCGTGGCA 61.422 52.632 0.00 0.00 43.19 4.92
714 751 1.950630 CAAACCTTTGCAGCGTGGC 60.951 57.895 0.00 0.00 0.00 5.01
715 752 0.102120 TTCAAACCTTTGCAGCGTGG 59.898 50.000 0.00 0.00 38.05 4.94
716 753 1.202290 ACTTCAAACCTTTGCAGCGTG 60.202 47.619 0.00 0.00 35.30 5.34
717 754 1.102978 ACTTCAAACCTTTGCAGCGT 58.897 45.000 0.00 0.00 35.30 5.07
718 755 2.208326 AACTTCAAACCTTTGCAGCG 57.792 45.000 0.00 0.00 35.30 5.18
719 756 4.740205 GTCTTAACTTCAAACCTTTGCAGC 59.260 41.667 0.00 0.00 35.30 5.25
720 757 5.890334 TGTCTTAACTTCAAACCTTTGCAG 58.110 37.500 0.00 0.00 37.43 4.41
721 758 5.906113 TGTCTTAACTTCAAACCTTTGCA 57.094 34.783 0.00 0.00 38.05 4.08
722 759 6.273071 ACATGTCTTAACTTCAAACCTTTGC 58.727 36.000 0.00 0.00 38.05 3.68
723 760 8.190784 AGAACATGTCTTAACTTCAAACCTTTG 58.809 33.333 0.00 0.00 34.46 2.77
724 761 8.293699 AGAACATGTCTTAACTTCAAACCTTT 57.706 30.769 0.00 0.00 29.66 3.11
725 762 7.881775 AGAACATGTCTTAACTTCAAACCTT 57.118 32.000 0.00 0.00 29.66 3.50
726 763 9.003658 CATAGAACATGTCTTAACTTCAAACCT 57.996 33.333 0.00 0.00 37.84 3.50
727 764 8.784043 ACATAGAACATGTCTTAACTTCAAACC 58.216 33.333 0.00 0.00 37.84 3.27
728 765 9.599322 CACATAGAACATGTCTTAACTTCAAAC 57.401 33.333 0.00 0.00 37.84 2.93
729 766 9.554395 TCACATAGAACATGTCTTAACTTCAAA 57.446 29.630 0.00 0.00 37.84 2.69
730 767 9.208022 CTCACATAGAACATGTCTTAACTTCAA 57.792 33.333 0.00 0.00 37.84 2.69
731 768 8.585018 TCTCACATAGAACATGTCTTAACTTCA 58.415 33.333 0.00 0.00 37.84 3.02
732 769 8.988064 TCTCACATAGAACATGTCTTAACTTC 57.012 34.615 0.00 0.00 37.84 3.01
733 770 8.807118 TCTCTCACATAGAACATGTCTTAACTT 58.193 33.333 0.00 0.00 37.84 2.66
734 771 8.354711 TCTCTCACATAGAACATGTCTTAACT 57.645 34.615 0.00 0.00 37.84 2.24
735 772 8.988064 TTCTCTCACATAGAACATGTCTTAAC 57.012 34.615 0.00 0.00 37.84 2.01
736 773 9.424319 GTTTCTCTCACATAGAACATGTCTTAA 57.576 33.333 0.00 0.00 37.84 1.85
737 774 8.585018 TGTTTCTCTCACATAGAACATGTCTTA 58.415 33.333 0.00 0.00 37.84 2.10
738 775 7.445121 TGTTTCTCTCACATAGAACATGTCTT 58.555 34.615 0.00 0.00 37.84 3.01
739 776 6.997655 TGTTTCTCTCACATAGAACATGTCT 58.002 36.000 0.00 0.69 40.71 3.41
740 777 7.658179 TTGTTTCTCTCACATAGAACATGTC 57.342 36.000 0.00 0.00 32.81 3.06
741 778 8.450578 TTTTGTTTCTCTCACATAGAACATGT 57.549 30.769 0.00 0.00 32.81 3.21
784 821 8.796475 AGATCTGTGCAACACAATTAACTTTAT 58.204 29.630 0.00 0.00 45.67 1.40
785 822 8.165239 AGATCTGTGCAACACAATTAACTTTA 57.835 30.769 0.00 0.00 45.67 1.85
786 823 7.042797 AGATCTGTGCAACACAATTAACTTT 57.957 32.000 0.00 0.00 45.67 2.66
787 824 6.639632 AGATCTGTGCAACACAATTAACTT 57.360 33.333 0.00 0.00 45.67 2.66
788 825 6.639632 AAGATCTGTGCAACACAATTAACT 57.360 33.333 0.00 0.00 45.67 2.24
789 826 8.795786 TTTAAGATCTGTGCAACACAATTAAC 57.204 30.769 0.00 0.00 45.67 2.01
790 827 7.594758 GCTTTAAGATCTGTGCAACACAATTAA 59.405 33.333 0.00 3.37 45.67 1.40
791 828 7.083858 GCTTTAAGATCTGTGCAACACAATTA 58.916 34.615 0.00 0.00 45.67 1.40
792 829 5.922544 GCTTTAAGATCTGTGCAACACAATT 59.077 36.000 0.00 0.00 45.67 2.32
793 830 5.009911 TGCTTTAAGATCTGTGCAACACAAT 59.990 36.000 0.00 0.00 45.67 2.71
794 831 4.337836 TGCTTTAAGATCTGTGCAACACAA 59.662 37.500 0.00 0.00 45.67 3.33
795 832 3.882288 TGCTTTAAGATCTGTGCAACACA 59.118 39.130 0.00 0.00 45.67 3.72
796 833 4.488126 TGCTTTAAGATCTGTGCAACAC 57.512 40.909 0.00 0.00 45.67 3.32
798 835 8.589629 CAAATATTGCTTTAAGATCTGTGCAAC 58.410 33.333 19.76 2.27 42.01 4.17
799 836 8.522003 TCAAATATTGCTTTAAGATCTGTGCAA 58.478 29.630 19.69 19.69 43.09 4.08
800 837 7.970061 GTCAAATATTGCTTTAAGATCTGTGCA 59.030 33.333 0.00 1.97 0.00 4.57
801 838 7.970061 TGTCAAATATTGCTTTAAGATCTGTGC 59.030 33.333 0.00 0.00 0.00 4.57
802 839 9.499585 CTGTCAAATATTGCTTTAAGATCTGTG 57.500 33.333 0.00 0.00 0.00 3.66
803 840 8.186821 GCTGTCAAATATTGCTTTAAGATCTGT 58.813 33.333 0.00 0.00 0.00 3.41
804 841 7.646922 GGCTGTCAAATATTGCTTTAAGATCTG 59.353 37.037 0.00 0.00 0.00 2.90
805 842 7.340232 TGGCTGTCAAATATTGCTTTAAGATCT 59.660 33.333 0.00 0.00 0.00 2.75
806 843 7.483307 TGGCTGTCAAATATTGCTTTAAGATC 58.517 34.615 0.00 0.00 0.00 2.75
807 844 7.408756 TGGCTGTCAAATATTGCTTTAAGAT 57.591 32.000 0.00 0.00 0.00 2.40
808 845 6.127647 CCTGGCTGTCAAATATTGCTTTAAGA 60.128 38.462 0.00 0.00 0.00 2.10
809 846 6.038356 CCTGGCTGTCAAATATTGCTTTAAG 58.962 40.000 0.00 0.00 0.00 1.85
810 847 5.714333 TCCTGGCTGTCAAATATTGCTTTAA 59.286 36.000 0.00 0.00 0.00 1.52
811 848 5.260424 TCCTGGCTGTCAAATATTGCTTTA 58.740 37.500 0.00 0.00 0.00 1.85
812 849 4.088634 TCCTGGCTGTCAAATATTGCTTT 58.911 39.130 0.00 0.00 0.00 3.51
813 850 3.700538 TCCTGGCTGTCAAATATTGCTT 58.299 40.909 0.00 0.00 0.00 3.91
814 851 3.370840 TCCTGGCTGTCAAATATTGCT 57.629 42.857 0.00 0.00 0.00 3.91
815 852 5.067674 TGTTATCCTGGCTGTCAAATATTGC 59.932 40.000 0.00 0.00 0.00 3.56
816 853 6.238842 CCTGTTATCCTGGCTGTCAAATATTG 60.239 42.308 0.00 0.00 0.00 1.90
817 854 5.829924 CCTGTTATCCTGGCTGTCAAATATT 59.170 40.000 0.00 0.00 0.00 1.28
818 855 5.380043 CCTGTTATCCTGGCTGTCAAATAT 58.620 41.667 0.00 0.00 0.00 1.28
819 856 4.385199 CCCTGTTATCCTGGCTGTCAAATA 60.385 45.833 0.00 0.00 0.00 1.40
820 857 3.624777 CCTGTTATCCTGGCTGTCAAAT 58.375 45.455 0.00 0.00 0.00 2.32
821 858 2.290896 CCCTGTTATCCTGGCTGTCAAA 60.291 50.000 0.00 0.00 0.00 2.69
822 859 1.281867 CCCTGTTATCCTGGCTGTCAA 59.718 52.381 0.00 0.00 0.00 3.18
823 860 0.911769 CCCTGTTATCCTGGCTGTCA 59.088 55.000 0.00 0.00 0.00 3.58
824 861 0.464554 GCCCTGTTATCCTGGCTGTC 60.465 60.000 0.00 0.00 40.77 3.51
825 862 1.609783 GCCCTGTTATCCTGGCTGT 59.390 57.895 0.00 0.00 40.77 4.40
826 863 1.152881 GGCCCTGTTATCCTGGCTG 60.153 63.158 0.00 0.00 43.50 4.85
827 864 2.386935 GGGCCCTGTTATCCTGGCT 61.387 63.158 17.04 0.00 43.50 4.75
828 865 2.195956 GGGCCCTGTTATCCTGGC 59.804 66.667 17.04 0.00 43.26 4.85
829 866 2.510906 CGGGCCCTGTTATCCTGG 59.489 66.667 22.43 0.00 0.00 4.45
830 867 1.418908 ATCCGGGCCCTGTTATCCTG 61.419 60.000 22.43 0.00 0.00 3.86
831 868 1.073706 ATCCGGGCCCTGTTATCCT 60.074 57.895 22.43 0.00 0.00 3.24
832 869 1.073199 CATCCGGGCCCTGTTATCC 59.927 63.158 22.43 0.00 0.00 2.59
833 870 1.600916 GCATCCGGGCCCTGTTATC 60.601 63.158 22.43 0.14 0.00 1.75
834 871 2.343475 CTGCATCCGGGCCCTGTTAT 62.343 60.000 22.43 4.61 0.00 1.89
835 872 3.012119 TGCATCCGGGCCCTGTTA 61.012 61.111 22.43 1.95 0.00 2.41
836 873 4.431131 CTGCATCCGGGCCCTGTT 62.431 66.667 22.43 5.40 0.00 3.16
838 875 3.882326 ATCTGCATCCGGGCCCTG 61.882 66.667 22.43 14.86 0.00 4.45
839 876 3.882326 CATCTGCATCCGGGCCCT 61.882 66.667 22.43 0.00 0.00 5.19
840 877 3.721370 AACATCTGCATCCGGGCCC 62.721 63.158 13.57 13.57 0.00 5.80
841 878 1.322538 AAAACATCTGCATCCGGGCC 61.323 55.000 0.00 0.00 0.00 5.80
842 879 1.388547 TAAAACATCTGCATCCGGGC 58.611 50.000 0.00 0.00 0.00 6.13
843 880 4.448537 TTTTAAAACATCTGCATCCGGG 57.551 40.909 0.00 0.00 0.00 5.73
844 881 6.589523 TGAATTTTTAAAACATCTGCATCCGG 59.410 34.615 0.00 0.00 0.00 5.14
845 882 7.447430 GTGAATTTTTAAAACATCTGCATCCG 58.553 34.615 0.00 0.00 0.00 4.18
846 883 7.116233 ACGTGAATTTTTAAAACATCTGCATCC 59.884 33.333 0.00 0.00 0.00 3.51
847 884 8.006741 ACGTGAATTTTTAAAACATCTGCATC 57.993 30.769 0.00 0.00 0.00 3.91
848 885 7.116233 GGACGTGAATTTTTAAAACATCTGCAT 59.884 33.333 0.00 0.00 0.00 3.96
849 886 6.419413 GGACGTGAATTTTTAAAACATCTGCA 59.581 34.615 0.00 0.00 0.00 4.41
850 887 6.128929 GGGACGTGAATTTTTAAAACATCTGC 60.129 38.462 0.00 0.31 0.00 4.26
851 888 7.333288 GGGACGTGAATTTTTAAAACATCTG 57.667 36.000 0.00 2.75 0.00 2.90
871 908 8.801715 TCTATTATATGTTTTCGTTACGGGAC 57.198 34.615 4.53 2.22 0.00 4.46
872 909 9.814899 TTTCTATTATATGTTTTCGTTACGGGA 57.185 29.630 4.53 0.00 0.00 5.14
873 910 9.853921 GTTTCTATTATATGTTTTCGTTACGGG 57.146 33.333 4.53 0.00 0.00 5.28
874 911 9.853921 GGTTTCTATTATATGTTTTCGTTACGG 57.146 33.333 4.53 0.00 0.00 4.02
875 912 9.853921 GGGTTTCTATTATATGTTTTCGTTACG 57.146 33.333 0.00 0.00 0.00 3.18
880 917 9.511144 GGTTTGGGTTTCTATTATATGTTTTCG 57.489 33.333 0.00 0.00 0.00 3.46
881 918 9.811995 GGGTTTGGGTTTCTATTATATGTTTTC 57.188 33.333 0.00 0.00 0.00 2.29
882 919 9.555411 AGGGTTTGGGTTTCTATTATATGTTTT 57.445 29.630 0.00 0.00 0.00 2.43
887 924 9.650714 GGTTTAGGGTTTGGGTTTCTATTATAT 57.349 33.333 0.00 0.00 0.00 0.86
888 925 8.060689 GGGTTTAGGGTTTGGGTTTCTATTATA 58.939 37.037 0.00 0.00 0.00 0.98
889 926 6.899075 GGGTTTAGGGTTTGGGTTTCTATTAT 59.101 38.462 0.00 0.00 0.00 1.28
890 927 6.047001 AGGGTTTAGGGTTTGGGTTTCTATTA 59.953 38.462 0.00 0.00 0.00 0.98
891 928 5.088730 GGGTTTAGGGTTTGGGTTTCTATT 58.911 41.667 0.00 0.00 0.00 1.73
892 929 4.358918 AGGGTTTAGGGTTTGGGTTTCTAT 59.641 41.667 0.00 0.00 0.00 1.98
893 930 3.728456 AGGGTTTAGGGTTTGGGTTTCTA 59.272 43.478 0.00 0.00 0.00 2.10
894 931 2.520980 AGGGTTTAGGGTTTGGGTTTCT 59.479 45.455 0.00 0.00 0.00 2.52
895 932 2.966915 AGGGTTTAGGGTTTGGGTTTC 58.033 47.619 0.00 0.00 0.00 2.78
896 933 4.556225 TTAGGGTTTAGGGTTTGGGTTT 57.444 40.909 0.00 0.00 0.00 3.27
897 934 4.225573 GTTTAGGGTTTAGGGTTTGGGTT 58.774 43.478 0.00 0.00 0.00 4.11
898 935 3.207093 TGTTTAGGGTTTAGGGTTTGGGT 59.793 43.478 0.00 0.00 0.00 4.51
899 936 3.575256 GTGTTTAGGGTTTAGGGTTTGGG 59.425 47.826 0.00 0.00 0.00 4.12
900 937 3.575256 GGTGTTTAGGGTTTAGGGTTTGG 59.425 47.826 0.00 0.00 0.00 3.28
901 938 3.575256 GGGTGTTTAGGGTTTAGGGTTTG 59.425 47.826 0.00 0.00 0.00 2.93
902 939 3.438372 GGGGTGTTTAGGGTTTAGGGTTT 60.438 47.826 0.00 0.00 0.00 3.27
903 940 2.110543 GGGGTGTTTAGGGTTTAGGGTT 59.889 50.000 0.00 0.00 0.00 4.11
904 941 1.712510 GGGGTGTTTAGGGTTTAGGGT 59.287 52.381 0.00 0.00 0.00 4.34
905 942 1.711942 TGGGGTGTTTAGGGTTTAGGG 59.288 52.381 0.00 0.00 0.00 3.53
906 943 3.159472 GTTGGGGTGTTTAGGGTTTAGG 58.841 50.000 0.00 0.00 0.00 2.69
907 944 3.159472 GGTTGGGGTGTTTAGGGTTTAG 58.841 50.000 0.00 0.00 0.00 1.85
908 945 2.790585 AGGTTGGGGTGTTTAGGGTTTA 59.209 45.455 0.00 0.00 0.00 2.01
909 946 1.576757 AGGTTGGGGTGTTTAGGGTTT 59.423 47.619 0.00 0.00 0.00 3.27
910 947 1.146359 GAGGTTGGGGTGTTTAGGGTT 59.854 52.381 0.00 0.00 0.00 4.11
911 948 0.775542 GAGGTTGGGGTGTTTAGGGT 59.224 55.000 0.00 0.00 0.00 4.34
912 949 0.322187 CGAGGTTGGGGTGTTTAGGG 60.322 60.000 0.00 0.00 0.00 3.53
913 950 0.399075 ACGAGGTTGGGGTGTTTAGG 59.601 55.000 0.00 0.00 0.00 2.69
914 951 3.069289 GTTACGAGGTTGGGGTGTTTAG 58.931 50.000 0.00 0.00 0.00 1.85
915 952 2.224499 GGTTACGAGGTTGGGGTGTTTA 60.224 50.000 0.00 0.00 0.00 2.01
916 953 1.477377 GGTTACGAGGTTGGGGTGTTT 60.477 52.381 0.00 0.00 0.00 2.83
917 954 0.109153 GGTTACGAGGTTGGGGTGTT 59.891 55.000 0.00 0.00 0.00 3.32
918 955 1.055551 TGGTTACGAGGTTGGGGTGT 61.056 55.000 0.00 0.00 0.00 4.16
919 956 0.326927 ATGGTTACGAGGTTGGGGTG 59.673 55.000 0.00 0.00 0.00 4.61
920 957 0.616891 GATGGTTACGAGGTTGGGGT 59.383 55.000 0.00 0.00 0.00 4.95
921 958 0.616371 TGATGGTTACGAGGTTGGGG 59.384 55.000 0.00 0.00 0.00 4.96
922 959 2.093181 TGATGATGGTTACGAGGTTGGG 60.093 50.000 0.00 0.00 0.00 4.12
923 960 3.118775 TCTGATGATGGTTACGAGGTTGG 60.119 47.826 0.00 0.00 0.00 3.77
1055 1115 3.019964 TGCTTCTTTGGCACACGAT 57.980 47.368 0.00 0.00 39.29 3.73
1082 1142 0.171007 GTGCCAATCATCCAACACCG 59.829 55.000 0.00 0.00 0.00 4.94
1346 1428 1.902508 AGGTGGTCATGTCGATGAGTT 59.097 47.619 0.00 0.00 39.36 3.01
1594 1680 0.379316 TGATAGCGTATGTCGTGCGT 59.621 50.000 4.44 0.00 42.13 5.24
1652 1738 0.400213 ATGCAACCTCCACTCGGAAA 59.600 50.000 0.00 0.00 42.21 3.13
1797 1883 3.649277 CTTCCACTCCGGCTCCACG 62.649 68.421 0.00 0.00 33.14 4.94
1849 1935 2.036256 AAATGCCAGCCGCCTCTT 59.964 55.556 0.00 0.00 36.24 2.85
1924 2011 0.896940 AACTCCACTCCCTCGCGTAA 60.897 55.000 5.77 0.00 0.00 3.18
2055 2144 5.126384 AGTCTGAAGATGCTTAGACACTACC 59.874 44.000 0.00 0.00 41.44 3.18
2079 3397 5.623956 TCCAGAACACTACAGGAGAAAAA 57.376 39.130 0.00 0.00 0.00 1.94
2233 3560 8.971073 TGCTAGATTATTGCATGCTAGTATCTA 58.029 33.333 20.33 21.70 34.60 1.98
2311 3638 5.213891 TCTGCTCATGTCTGTTTCTACAA 57.786 39.130 0.00 0.00 32.92 2.41
2329 3656 1.204941 AGTACGTCCAACATCCTCTGC 59.795 52.381 0.00 0.00 0.00 4.26
2414 3741 3.965292 ACTCATCGTCGTATTCATCGT 57.035 42.857 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.