Multiple sequence alignment - TraesCS3D01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G273600 chr3D 100.000 5367 0 0 1 5367 379540614 379535248 0.000000e+00 9912.0
1 TraesCS3D01G273600 chr3D 86.010 1015 69 18 801 1801 150824933 150823978 0.000000e+00 1020.0
2 TraesCS3D01G273600 chr3D 88.095 126 14 1 5047 5171 590751878 590751753 1.200000e-31 148.0
3 TraesCS3D01G273600 chr3A 93.452 3940 177 40 723 4618 503755436 503751534 0.000000e+00 5771.0
4 TraesCS3D01G273600 chr3A 87.597 129 15 1 5047 5174 597887905 597888033 1.200000e-31 148.0
5 TraesCS3D01G273600 chr3B 93.859 3843 151 36 720 4508 495154318 495150507 0.000000e+00 5710.0
6 TraesCS3D01G273600 chr3B 94.318 440 25 0 156 595 31214480 31214919 0.000000e+00 675.0
7 TraesCS3D01G273600 chr3B 88.824 340 27 4 4611 4940 495121030 495120692 1.800000e-109 407.0
8 TraesCS3D01G273600 chr3B 88.785 321 23 10 5047 5367 495120508 495120201 1.090000e-101 381.0
9 TraesCS3D01G273600 chr3B 90.756 119 7 2 4504 4621 495144230 495144115 7.200000e-34 156.0
10 TraesCS3D01G273600 chr3B 97.826 46 1 0 1 46 31201629 31201674 4.460000e-11 80.5
11 TraesCS3D01G273600 chr1D 88.305 1180 128 8 985 2157 431829530 431828354 0.000000e+00 1406.0
12 TraesCS3D01G273600 chr1D 81.534 352 63 2 2964 3314 431827892 431827542 6.800000e-74 289.0
13 TraesCS3D01G273600 chr1D 83.957 187 26 1 1812 1994 491900783 491900969 5.520000e-40 176.0
14 TraesCS3D01G273600 chr1D 86.466 133 16 2 5047 5178 467930066 467930197 1.560000e-30 145.0
15 TraesCS3D01G273600 chr1D 91.026 78 7 0 4970 5047 255706426 255706503 7.350000e-19 106.0
16 TraesCS3D01G273600 chr1B 88.220 1180 129 8 985 2157 583210900 583209724 0.000000e+00 1400.0
17 TraesCS3D01G273600 chr1B 82.604 960 112 25 1157 2098 684276905 684277827 0.000000e+00 797.0
18 TraesCS3D01G273600 chr1B 81.375 349 61 4 2964 3310 583209262 583208916 1.140000e-71 281.0
19 TraesCS3D01G273600 chr1B 88.710 124 13 1 5047 5169 630655297 630655174 3.350000e-32 150.0
20 TraesCS3D01G273600 chr1B 84.000 150 21 3 4971 5119 1279164 1279017 2.020000e-29 141.0
21 TraesCS3D01G273600 chr1A 87.993 1166 131 7 998 2157 530260425 530259263 0.000000e+00 1369.0
22 TraesCS3D01G273600 chr1A 79.722 360 69 4 2964 3320 530258801 530258443 1.920000e-64 257.0
23 TraesCS3D01G273600 chr1A 94.203 69 4 0 4979 5047 369272095 369272027 7.350000e-19 106.0
24 TraesCS3D01G273600 chr1A 96.667 60 2 0 44 103 132414348 132414289 3.420000e-17 100.0
25 TraesCS3D01G273600 chr4B 84.648 1179 157 11 999 2153 667726378 667727556 0.000000e+00 1153.0
26 TraesCS3D01G273600 chr4B 96.667 60 2 0 44 103 162615500 162615559 3.420000e-17 100.0
27 TraesCS3D01G273600 chr7A 94.455 505 25 3 104 608 11247995 11248496 0.000000e+00 774.0
28 TraesCS3D01G273600 chr7A 84.932 146 17 4 5047 5191 32629414 32629555 5.600000e-30 143.0
29 TraesCS3D01G273600 chr7A 82.171 129 20 2 1189 1317 521341831 521341706 2.040000e-19 108.0
30 TraesCS3D01G273600 chr7A 91.026 78 7 0 4970 5047 616221780 616221857 7.350000e-19 106.0
31 TraesCS3D01G273600 chr7A 97.826 46 1 0 1 46 11247802 11247847 4.460000e-11 80.5
32 TraesCS3D01G273600 chr6B 94.919 492 24 1 104 595 52696589 52696099 0.000000e+00 769.0
33 TraesCS3D01G273600 chr6B 94.715 492 26 0 104 595 52708983 52708492 0.000000e+00 765.0
34 TraesCS3D01G273600 chr6B 91.026 78 7 0 4970 5047 671158180 671158257 7.350000e-19 106.0
35 TraesCS3D01G273600 chr6B 95.652 46 2 0 1 46 52696782 52696737 2.070000e-09 75.0
36 TraesCS3D01G273600 chr6B 95.652 46 2 0 1 46 52709176 52709131 2.070000e-09 75.0
37 TraesCS3D01G273600 chr6A 94.309 492 27 1 104 595 329993745 329993255 0.000000e+00 752.0
38 TraesCS3D01G273600 chr6A 89.382 518 38 5 104 608 615824538 615824025 2.110000e-178 636.0
39 TraesCS3D01G273600 chr6A 96.667 60 2 0 44 103 164793728 164793669 3.420000e-17 100.0
40 TraesCS3D01G273600 chr6A 96.667 60 2 0 44 103 164846747 164846688 3.420000e-17 100.0
41 TraesCS3D01G273600 chr6A 97.826 46 1 0 1 46 329993938 329993893 4.460000e-11 80.5
42 TraesCS3D01G273600 chr6A 95.652 46 2 0 1 46 615824731 615824686 2.070000e-09 75.0
43 TraesCS3D01G273600 chr7D 94.480 471 26 0 135 605 236186782 236187252 0.000000e+00 726.0
44 TraesCS3D01G273600 chr7D 85.748 428 44 7 2081 2493 38229535 38229960 2.300000e-118 436.0
45 TraesCS3D01G273600 chr7D 88.718 195 14 3 2543 2737 38230035 38230221 1.160000e-56 231.0
46 TraesCS3D01G273600 chr7B 92.475 505 36 2 104 608 660236117 660236619 0.000000e+00 721.0
47 TraesCS3D01G273600 chr4A 84.615 429 48 7 2081 2493 642907978 642907552 1.390000e-110 411.0
48 TraesCS3D01G273600 chr4A 89.744 195 18 2 2543 2737 642907479 642907287 1.150000e-61 248.0
49 TraesCS3D01G273600 chr4A 96.667 60 2 0 44 103 175771573 175771632 3.420000e-17 100.0
50 TraesCS3D01G273600 chr4A 96.667 60 2 0 44 103 471663946 471663887 3.420000e-17 100.0
51 TraesCS3D01G273600 chr5A 84.942 259 35 1 1797 2051 53333462 53333720 5.330000e-65 259.0
52 TraesCS3D01G273600 chr5D 88.800 125 12 2 5047 5170 428237959 428237836 9.310000e-33 152.0
53 TraesCS3D01G273600 chr5D 79.452 219 25 7 4970 5171 53029459 53029244 2.610000e-28 137.0
54 TraesCS3D01G273600 chr5D 93.506 77 5 0 4971 5047 365124208 365124284 1.220000e-21 115.0
55 TraesCS3D01G273600 chr5D 96.667 60 2 0 44 103 439260327 439260386 3.420000e-17 100.0
56 TraesCS3D01G273600 chr2D 80.928 194 34 3 4970 5161 646042695 646042887 3.350000e-32 150.0
57 TraesCS3D01G273600 chr4D 82.011 189 19 5 4984 5171 504324066 504323892 4.330000e-31 147.0
58 TraesCS3D01G273600 chr2A 98.333 60 1 0 44 103 724617289 724617348 7.350000e-19 106.0
59 TraesCS3D01G273600 chrUn 96.667 60 2 0 44 103 24549072 24549013 3.420000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G273600 chr3D 379535248 379540614 5366 True 9912.00 9912 100.0000 1 5367 1 chr3D.!!$R2 5366
1 TraesCS3D01G273600 chr3D 150823978 150824933 955 True 1020.00 1020 86.0100 801 1801 1 chr3D.!!$R1 1000
2 TraesCS3D01G273600 chr3A 503751534 503755436 3902 True 5771.00 5771 93.4520 723 4618 1 chr3A.!!$R1 3895
3 TraesCS3D01G273600 chr3B 495150507 495154318 3811 True 5710.00 5710 93.8590 720 4508 1 chr3B.!!$R2 3788
4 TraesCS3D01G273600 chr3B 495120201 495121030 829 True 394.00 407 88.8045 4611 5367 2 chr3B.!!$R3 756
5 TraesCS3D01G273600 chr1D 431827542 431829530 1988 True 847.50 1406 84.9195 985 3314 2 chr1D.!!$R1 2329
6 TraesCS3D01G273600 chr1B 583208916 583210900 1984 True 840.50 1400 84.7975 985 3310 2 chr1B.!!$R3 2325
7 TraesCS3D01G273600 chr1B 684276905 684277827 922 False 797.00 797 82.6040 1157 2098 1 chr1B.!!$F1 941
8 TraesCS3D01G273600 chr1A 530258443 530260425 1982 True 813.00 1369 83.8575 998 3320 2 chr1A.!!$R3 2322
9 TraesCS3D01G273600 chr4B 667726378 667727556 1178 False 1153.00 1153 84.6480 999 2153 1 chr4B.!!$F2 1154
10 TraesCS3D01G273600 chr7A 11247802 11248496 694 False 427.25 774 96.1405 1 608 2 chr7A.!!$F3 607
11 TraesCS3D01G273600 chr6B 52696099 52696782 683 True 422.00 769 95.2855 1 595 2 chr6B.!!$R1 594
12 TraesCS3D01G273600 chr6B 52708492 52709176 684 True 420.00 765 95.1835 1 595 2 chr6B.!!$R2 594
13 TraesCS3D01G273600 chr6A 329993255 329993938 683 True 416.25 752 96.0675 1 595 2 chr6A.!!$R3 594
14 TraesCS3D01G273600 chr6A 615824025 615824731 706 True 355.50 636 92.5170 1 608 2 chr6A.!!$R4 607
15 TraesCS3D01G273600 chr7D 38229535 38230221 686 False 333.50 436 87.2330 2081 2737 2 chr7D.!!$F2 656
16 TraesCS3D01G273600 chr7B 660236117 660236619 502 False 721.00 721 92.4750 104 608 1 chr7B.!!$F1 504
17 TraesCS3D01G273600 chr4A 642907287 642907978 691 True 329.50 411 87.1795 2081 2737 2 chr4A.!!$R2 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 576 0.250945 TGTTTTAGCGTCCCATGGCA 60.251 50.000 6.09 0.00 0.00 4.92 F
562 667 0.329261 AGTGATTTAGCTGGCCTGCA 59.671 50.000 32.96 17.97 34.99 4.41 F
632 737 1.153353 TGAAATCGGAAGCAACGGTC 58.847 50.000 0.00 0.00 0.00 4.79 F
633 738 1.270625 TGAAATCGGAAGCAACGGTCT 60.271 47.619 0.00 0.00 0.00 3.85 F
2476 2687 0.540365 AGTGGCTGGTGAATTGGTGG 60.540 55.000 0.00 0.00 0.00 4.61 F
3090 3469 0.322816 ATGAGGCCGTCAATGCAGTT 60.323 50.000 8.66 0.00 39.19 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2473 0.168128 GCAAATGGCGACCTGTACAC 59.832 55.000 0.00 0.0 0.00 2.90 R
2460 2670 0.251341 AGACCACCAATTCACCAGCC 60.251 55.000 0.00 0.0 0.00 4.85 R
2461 2671 1.270550 CAAGACCACCAATTCACCAGC 59.729 52.381 0.00 0.0 0.00 4.85 R
2538 2749 2.877866 ACAGAGCAGGTACAGTACAGT 58.122 47.619 12.89 0.0 0.00 3.55 R
3653 4039 0.835276 CCTCCTGCATGACCAGATCA 59.165 55.000 0.00 0.0 43.13 2.92 R
5032 5476 0.457851 GTCATCGTCTCCTCCCACTG 59.542 60.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.826710 CATGAACGTAATAAAGCAAATAGAGGA 58.173 33.333 0.00 0.00 0.00 3.71
50 51 6.928520 AGCAAATAGAGGAGAACAAAATTGG 58.071 36.000 0.00 0.00 0.00 3.16
51 52 5.578336 GCAAATAGAGGAGAACAAAATTGGC 59.422 40.000 0.00 0.00 0.00 4.52
53 54 7.325694 CAAATAGAGGAGAACAAAATTGGCAT 58.674 34.615 0.00 0.00 0.00 4.40
54 55 4.796038 AGAGGAGAACAAAATTGGCATG 57.204 40.909 0.00 0.00 0.00 4.06
55 56 3.056322 AGAGGAGAACAAAATTGGCATGC 60.056 43.478 9.90 9.90 0.00 4.06
56 57 2.027837 AGGAGAACAAAATTGGCATGCC 60.028 45.455 30.54 30.54 0.00 4.40
95 96 5.659440 CCAAATATTGGCAACTACTTGGT 57.341 39.130 17.59 0.00 45.17 3.67
97 98 7.164230 CCAAATATTGGCAACTACTTGGTTA 57.836 36.000 17.59 0.45 45.17 2.85
98 99 7.257722 CCAAATATTGGCAACTACTTGGTTAG 58.742 38.462 17.59 0.00 45.17 2.34
99 100 6.451064 AATATTGGCAACTACTTGGTTAGC 57.549 37.500 0.00 0.00 37.61 3.09
101 102 4.627284 TTGGCAACTACTTGGTTAGCTA 57.373 40.909 0.00 0.00 37.61 3.32
245 349 1.964552 CAGAAAGCCTAGCCCTCATG 58.035 55.000 0.00 0.00 0.00 3.07
293 398 4.954875 TGGGGTGTCAAAATGTCATTTTC 58.045 39.130 18.62 10.64 40.27 2.29
300 405 7.646130 GGTGTCAAAATGTCATTTTCGAAACTA 59.354 33.333 24.40 0.00 40.27 2.24
306 411 8.447787 AAATGTCATTTTCGAAACTAATTCCG 57.552 30.769 10.79 0.00 34.34 4.30
318 423 3.282021 ACTAATTCCGATGTGCTGCAAT 58.718 40.909 2.77 0.02 0.00 3.56
352 457 3.135530 ACTGAAGAGTATGATGCTTCCCC 59.864 47.826 0.00 0.00 37.75 4.81
434 539 4.447138 AATTGTGTGGGTTCCAAGAGTA 57.553 40.909 0.00 0.00 34.18 2.59
464 569 1.669265 GTAGCCCATGTTTTAGCGTCC 59.331 52.381 0.00 0.00 0.00 4.79
471 576 0.250945 TGTTTTAGCGTCCCATGGCA 60.251 50.000 6.09 0.00 0.00 4.92
478 583 2.040544 CGTCCCATGGCACTGGTTC 61.041 63.158 6.09 6.46 34.23 3.62
545 650 6.546034 ACTTTGTAAATTCTGCAGTTACCAGT 59.454 34.615 14.67 15.02 0.00 4.00
562 667 0.329261 AGTGATTTAGCTGGCCTGCA 59.671 50.000 32.96 17.97 34.99 4.41
626 731 5.957842 AAAACTACATGAAATCGGAAGCA 57.042 34.783 0.00 0.00 0.00 3.91
627 732 5.957842 AAACTACATGAAATCGGAAGCAA 57.042 34.783 0.00 0.00 0.00 3.91
628 733 4.946784 ACTACATGAAATCGGAAGCAAC 57.053 40.909 0.00 0.00 0.00 4.17
629 734 2.900122 ACATGAAATCGGAAGCAACG 57.100 45.000 0.00 0.00 0.00 4.10
630 735 1.468520 ACATGAAATCGGAAGCAACGG 59.531 47.619 0.00 0.00 0.00 4.44
631 736 1.468520 CATGAAATCGGAAGCAACGGT 59.531 47.619 0.00 0.00 0.00 4.83
632 737 1.153353 TGAAATCGGAAGCAACGGTC 58.847 50.000 0.00 0.00 0.00 4.79
633 738 1.270625 TGAAATCGGAAGCAACGGTCT 60.271 47.619 0.00 0.00 0.00 3.85
634 739 2.028839 TGAAATCGGAAGCAACGGTCTA 60.029 45.455 0.00 0.00 0.00 2.59
635 740 2.981859 AATCGGAAGCAACGGTCTAT 57.018 45.000 0.00 0.00 0.00 1.98
636 741 4.142116 TGAAATCGGAAGCAACGGTCTATA 60.142 41.667 0.00 0.00 0.00 1.31
637 742 4.395959 AATCGGAAGCAACGGTCTATAA 57.604 40.909 0.00 0.00 0.00 0.98
638 743 4.602340 ATCGGAAGCAACGGTCTATAAT 57.398 40.909 0.00 0.00 0.00 1.28
639 744 3.973657 TCGGAAGCAACGGTCTATAATC 58.026 45.455 0.00 0.00 0.00 1.75
640 745 3.635373 TCGGAAGCAACGGTCTATAATCT 59.365 43.478 0.00 0.00 0.00 2.40
641 746 3.982058 CGGAAGCAACGGTCTATAATCTC 59.018 47.826 0.00 0.00 0.00 2.75
642 747 4.499188 CGGAAGCAACGGTCTATAATCTCA 60.499 45.833 0.00 0.00 0.00 3.27
643 748 5.542779 GGAAGCAACGGTCTATAATCTCAT 58.457 41.667 0.00 0.00 0.00 2.90
644 749 5.406780 GGAAGCAACGGTCTATAATCTCATG 59.593 44.000 0.00 0.00 0.00 3.07
645 750 4.887748 AGCAACGGTCTATAATCTCATGG 58.112 43.478 0.00 0.00 0.00 3.66
646 751 4.345257 AGCAACGGTCTATAATCTCATGGT 59.655 41.667 0.00 0.00 0.00 3.55
647 752 5.057149 GCAACGGTCTATAATCTCATGGTT 58.943 41.667 0.00 0.00 0.00 3.67
648 753 5.527582 GCAACGGTCTATAATCTCATGGTTT 59.472 40.000 0.00 0.00 0.00 3.27
649 754 6.704493 GCAACGGTCTATAATCTCATGGTTTA 59.296 38.462 0.00 0.00 0.00 2.01
650 755 7.387948 GCAACGGTCTATAATCTCATGGTTTAT 59.612 37.037 0.00 0.00 0.00 1.40
651 756 9.273016 CAACGGTCTATAATCTCATGGTTTATT 57.727 33.333 0.00 0.00 0.00 1.40
652 757 9.847224 AACGGTCTATAATCTCATGGTTTATTT 57.153 29.630 0.00 0.00 0.00 1.40
653 758 9.847224 ACGGTCTATAATCTCATGGTTTATTTT 57.153 29.630 0.00 0.00 0.00 1.82
669 774 9.567776 TGGTTTATTTTAGACTTCATTCTGTGA 57.432 29.630 0.00 0.00 34.25 3.58
675 780 9.606631 ATTTTAGACTTCATTCTGTGATACTCC 57.393 33.333 0.00 0.00 36.54 3.85
676 781 5.606348 AGACTTCATTCTGTGATACTCCC 57.394 43.478 0.00 0.00 36.54 4.30
677 782 5.276440 AGACTTCATTCTGTGATACTCCCT 58.724 41.667 0.00 0.00 36.54 4.20
678 783 5.362430 AGACTTCATTCTGTGATACTCCCTC 59.638 44.000 0.00 0.00 36.54 4.30
679 784 4.407296 ACTTCATTCTGTGATACTCCCTCC 59.593 45.833 0.00 0.00 36.54 4.30
680 785 3.309296 TCATTCTGTGATACTCCCTCCC 58.691 50.000 0.00 0.00 0.00 4.30
681 786 3.051803 TCATTCTGTGATACTCCCTCCCT 60.052 47.826 0.00 0.00 0.00 4.20
682 787 3.491766 TTCTGTGATACTCCCTCCCTT 57.508 47.619 0.00 0.00 0.00 3.95
683 788 3.491766 TCTGTGATACTCCCTCCCTTT 57.508 47.619 0.00 0.00 0.00 3.11
684 789 3.375699 TCTGTGATACTCCCTCCCTTTC 58.624 50.000 0.00 0.00 0.00 2.62
685 790 3.012959 TCTGTGATACTCCCTCCCTTTCT 59.987 47.826 0.00 0.00 0.00 2.52
686 791 3.107601 TGTGATACTCCCTCCCTTTCTG 58.892 50.000 0.00 0.00 0.00 3.02
687 792 3.108376 GTGATACTCCCTCCCTTTCTGT 58.892 50.000 0.00 0.00 0.00 3.41
688 793 4.264668 TGTGATACTCCCTCCCTTTCTGTA 60.265 45.833 0.00 0.00 0.00 2.74
689 794 4.715297 GTGATACTCCCTCCCTTTCTGTAA 59.285 45.833 0.00 0.00 0.00 2.41
690 795 5.367060 GTGATACTCCCTCCCTTTCTGTAAT 59.633 44.000 0.00 0.00 0.00 1.89
691 796 5.366768 TGATACTCCCTCCCTTTCTGTAATG 59.633 44.000 0.00 0.00 0.00 1.90
692 797 3.532102 ACTCCCTCCCTTTCTGTAATGT 58.468 45.455 0.00 0.00 0.00 2.71
693 798 4.695606 ACTCCCTCCCTTTCTGTAATGTA 58.304 43.478 0.00 0.00 0.00 2.29
694 799 5.098663 ACTCCCTCCCTTTCTGTAATGTAA 58.901 41.667 0.00 0.00 0.00 2.41
695 800 5.189934 ACTCCCTCCCTTTCTGTAATGTAAG 59.810 44.000 0.00 0.00 0.00 2.34
696 801 5.347124 TCCCTCCCTTTCTGTAATGTAAGA 58.653 41.667 0.00 0.00 0.00 2.10
697 802 5.189145 TCCCTCCCTTTCTGTAATGTAAGAC 59.811 44.000 0.00 0.00 0.00 3.01
698 803 5.109903 CCTCCCTTTCTGTAATGTAAGACG 58.890 45.833 0.00 0.00 0.00 4.18
699 804 5.337330 CCTCCCTTTCTGTAATGTAAGACGT 60.337 44.000 0.00 0.00 0.00 4.34
700 805 6.105397 TCCCTTTCTGTAATGTAAGACGTT 57.895 37.500 0.00 0.00 0.00 3.99
701 806 6.527423 TCCCTTTCTGTAATGTAAGACGTTT 58.473 36.000 0.00 0.00 0.00 3.60
702 807 6.993902 TCCCTTTCTGTAATGTAAGACGTTTT 59.006 34.615 0.00 0.00 0.00 2.43
703 808 7.499895 TCCCTTTCTGTAATGTAAGACGTTTTT 59.500 33.333 0.00 0.00 0.00 1.94
732 837 4.022464 GCTGTAGCAGTAGACACAGTAG 57.978 50.000 0.00 0.00 40.40 2.57
753 858 2.836793 CGCACGGTTCCGGGTTTTT 61.837 57.895 14.97 0.00 35.01 1.94
2176 2368 2.551071 GGTAAGTGCTCTGTTCTTGCCT 60.551 50.000 0.00 0.00 39.58 4.75
2200 2405 6.290294 AGCCAATTTTATGATTTCTGCACT 57.710 33.333 0.00 0.00 0.00 4.40
2221 2426 6.255453 GCACTGTCAATTTTGCAGAGTTTTTA 59.745 34.615 16.32 0.00 36.50 1.52
2230 2439 5.356882 TTGCAGAGTTTTTACCTTGATCG 57.643 39.130 0.00 0.00 0.00 3.69
2250 2459 2.034001 CGCCGGTCTTAAATCGATGTTC 60.034 50.000 1.90 0.00 0.00 3.18
2258 2467 7.084486 GGTCTTAAATCGATGTTCTGCTTTTT 58.916 34.615 0.00 0.00 0.00 1.94
2259 2468 8.234546 GGTCTTAAATCGATGTTCTGCTTTTTA 58.765 33.333 0.00 0.00 0.00 1.52
2265 2474 8.816640 AATCGATGTTCTGCTTTTTATTTTGT 57.183 26.923 0.00 0.00 0.00 2.83
2266 2475 7.621832 TCGATGTTCTGCTTTTTATTTTGTG 57.378 32.000 0.00 0.00 0.00 3.33
2460 2670 2.534298 CTCGGCTAGTTGATGTGAGTG 58.466 52.381 0.00 0.00 0.00 3.51
2461 2671 1.204704 TCGGCTAGTTGATGTGAGTGG 59.795 52.381 0.00 0.00 0.00 4.00
2476 2687 0.540365 AGTGGCTGGTGAATTGGTGG 60.540 55.000 0.00 0.00 0.00 4.61
2486 2697 4.280677 TGGTGAATTGGTGGTCTTGATTTC 59.719 41.667 0.00 0.00 0.00 2.17
2487 2698 4.524328 GGTGAATTGGTGGTCTTGATTTCT 59.476 41.667 0.00 0.00 0.00 2.52
2488 2699 5.335976 GGTGAATTGGTGGTCTTGATTTCTC 60.336 44.000 0.00 0.00 0.00 2.87
2489 2700 5.474876 GTGAATTGGTGGTCTTGATTTCTCT 59.525 40.000 0.00 0.00 0.00 3.10
2491 2702 7.174946 GTGAATTGGTGGTCTTGATTTCTCTAA 59.825 37.037 0.00 0.00 0.00 2.10
2495 2706 6.409704 TGGTGGTCTTGATTTCTCTAATCTG 58.590 40.000 0.00 0.00 42.63 2.90
2496 2707 6.013379 TGGTGGTCTTGATTTCTCTAATCTGT 60.013 38.462 0.00 0.00 42.63 3.41
2499 2710 8.470805 GTGGTCTTGATTTCTCTAATCTGTCTA 58.529 37.037 0.00 0.00 42.63 2.59
2509 2720 8.709386 TTCTCTAATCTGTCTAATGAAGTTGC 57.291 34.615 0.00 0.00 0.00 4.17
2510 2721 8.072321 TCTCTAATCTGTCTAATGAAGTTGCT 57.928 34.615 0.00 0.00 0.00 3.91
2513 2724 9.507329 TCTAATCTGTCTAATGAAGTTGCTTTT 57.493 29.630 0.00 0.00 0.00 2.27
2522 2733 4.014847 TGAAGTTGCTTTTGTTCTGACG 57.985 40.909 0.00 0.00 0.00 4.35
2525 2736 5.525745 TGAAGTTGCTTTTGTTCTGACGATA 59.474 36.000 0.00 0.00 0.00 2.92
2832 3211 2.722201 GGGTGAGACCGGCGAGAAT 61.722 63.158 9.30 0.00 39.83 2.40
2985 3364 4.008933 GTGAGCCGCTGGACTGGT 62.009 66.667 0.00 0.00 0.00 4.00
3043 3422 1.301558 CTGATCGGGCTGGCAGATC 60.302 63.158 28.49 28.49 40.68 2.75
3060 3439 0.749649 ATCGACTGCATCAGAGGGTC 59.250 55.000 0.29 0.00 35.18 4.46
3090 3469 0.322816 ATGAGGCCGTCAATGCAGTT 60.323 50.000 8.66 0.00 39.19 3.16
3105 3484 1.276421 GCAGTTGGAGAGGCTGTTCTA 59.724 52.381 0.00 0.00 33.18 2.10
3162 3541 4.226168 CCTACTGGTTCATTCCTCTTCCTT 59.774 45.833 0.00 0.00 0.00 3.36
3326 3705 5.020795 TGGGTAACTACTCAGCATAGTTCA 58.979 41.667 0.85 0.00 41.05 3.18
3327 3706 5.661312 TGGGTAACTACTCAGCATAGTTCAT 59.339 40.000 0.85 0.00 41.05 2.57
3328 3707 6.183360 TGGGTAACTACTCAGCATAGTTCATC 60.183 42.308 0.85 0.00 41.05 2.92
3340 3719 4.449131 CATAGTTCATCATGCTCACCACT 58.551 43.478 0.00 0.00 0.00 4.00
3359 3738 5.221986 ACCACTATGGATGTGCATCATATGT 60.222 40.000 13.37 4.91 40.96 2.29
3395 3781 5.101628 GTGAACTTGTTGTGAATTTGCAGA 58.898 37.500 0.00 0.00 0.00 4.26
3398 3784 7.596248 GTGAACTTGTTGTGAATTTGCAGATAT 59.404 33.333 0.00 0.00 0.00 1.63
3410 3796 6.778834 ATTTGCAGATATGTTGGTCATGAA 57.221 33.333 0.00 0.00 37.91 2.57
3416 3802 5.530171 CAGATATGTTGGTCATGAAGAAGGG 59.470 44.000 0.00 0.00 37.91 3.95
3566 3952 1.613437 CAAGGCAGGACGGTTGATTTT 59.387 47.619 0.00 0.00 0.00 1.82
3575 3961 3.120442 GGACGGTTGATTTTAGGAACACG 60.120 47.826 0.00 0.00 0.00 4.49
3593 3979 2.110578 ACGGTGATCATCATGACCTCA 58.889 47.619 6.80 0.00 34.19 3.86
3635 4021 2.759560 GCCGGAATGGTGGGCAAT 60.760 61.111 5.05 0.00 46.13 3.56
3653 4039 2.386661 ATTCGATGAAGGTTGCTCGT 57.613 45.000 0.00 0.00 33.10 4.18
3659 4045 2.084610 TGAAGGTTGCTCGTGATCTG 57.915 50.000 0.00 0.00 0.00 2.90
3691 4080 4.941263 GGAGGTATGTACTGAATTTGCACA 59.059 41.667 0.00 0.00 0.00 4.57
3694 4083 7.445402 GGAGGTATGTACTGAATTTGCACATAT 59.555 37.037 0.00 0.00 35.28 1.78
3695 4084 9.489084 GAGGTATGTACTGAATTTGCACATATA 57.511 33.333 0.00 0.00 35.28 0.86
3743 4137 3.077359 AGTTTGCAGTCTGATGCCTAAC 58.923 45.455 3.32 0.00 45.91 2.34
3745 4139 0.608130 TGCAGTCTGATGCCTAACGT 59.392 50.000 3.32 0.00 45.91 3.99
3749 4143 5.772635 GCAGTCTGATGCCTAACGTGAGT 62.773 52.174 3.32 0.00 43.51 3.41
3953 4347 3.425578 GGACGTCATCCTGTCACTG 57.574 57.895 18.91 0.00 45.22 3.66
4005 4399 9.091784 TCGAATCTCATTCTTCACTAATCAAAG 57.908 33.333 0.00 0.00 37.13 2.77
4009 4403 7.389232 TCTCATTCTTCACTAATCAAAGAGCA 58.611 34.615 0.00 0.00 31.16 4.26
4010 4404 8.045507 TCTCATTCTTCACTAATCAAAGAGCAT 58.954 33.333 0.00 0.00 31.16 3.79
4011 4405 8.206325 TCATTCTTCACTAATCAAAGAGCATC 57.794 34.615 0.00 0.00 31.16 3.91
4063 4466 1.378531 TCAATATGCGGCAACAGGTC 58.621 50.000 6.82 0.00 0.00 3.85
4117 4520 1.975660 AGAGGATAGTGACGGAGCTC 58.024 55.000 4.71 4.71 0.00 4.09
4261 4664 1.021390 GCCACAAGTCCGACATCCTG 61.021 60.000 0.40 0.00 0.00 3.86
4334 4737 4.163649 AGAAGATGAAGATCATGCAGGACA 59.836 41.667 1.71 0.00 37.20 4.02
4413 4818 3.386768 TCTGACTGTAGTTCCAAGTGC 57.613 47.619 0.00 0.00 0.00 4.40
4447 4852 3.433615 AGTCGTATGAGCTCTGTTTTTGC 59.566 43.478 16.19 0.00 0.00 3.68
4536 4941 6.875726 TGTAGTTGAGGATGAAGTGAAATCAG 59.124 38.462 0.00 0.00 0.00 2.90
4549 4954 9.246670 TGAAGTGAAATCAGGATTGTGATTATT 57.753 29.630 0.00 0.00 44.72 1.40
4550 4955 9.727627 GAAGTGAAATCAGGATTGTGATTATTC 57.272 33.333 0.00 0.00 44.72 1.75
4552 4957 8.900781 AGTGAAATCAGGATTGTGATTATTCTG 58.099 33.333 0.00 0.00 44.72 3.02
4553 4958 7.646922 GTGAAATCAGGATTGTGATTATTCTGC 59.353 37.037 0.00 0.00 44.72 4.26
4556 4961 7.893124 ATCAGGATTGTGATTATTCTGCTTT 57.107 32.000 0.00 0.00 33.07 3.51
4557 4962 7.325660 TCAGGATTGTGATTATTCTGCTTTC 57.674 36.000 0.00 0.00 0.00 2.62
4558 4963 6.037500 TCAGGATTGTGATTATTCTGCTTTCG 59.962 38.462 0.00 0.00 0.00 3.46
4559 4964 5.882557 AGGATTGTGATTATTCTGCTTTCGT 59.117 36.000 0.00 0.00 0.00 3.85
4560 4965 7.011389 CAGGATTGTGATTATTCTGCTTTCGTA 59.989 37.037 0.00 0.00 0.00 3.43
4561 4966 7.552687 AGGATTGTGATTATTCTGCTTTCGTAA 59.447 33.333 0.00 0.00 0.00 3.18
4564 4969 5.353123 TGTGATTATTCTGCTTTCGTAACCC 59.647 40.000 0.00 0.00 0.00 4.11
4565 4970 4.879545 TGATTATTCTGCTTTCGTAACCCC 59.120 41.667 0.00 0.00 0.00 4.95
4566 4971 2.871096 ATTCTGCTTTCGTAACCCCA 57.129 45.000 0.00 0.00 0.00 4.96
4567 4972 2.178912 TTCTGCTTTCGTAACCCCAG 57.821 50.000 0.00 0.00 0.00 4.45
4570 4975 2.158726 TCTGCTTTCGTAACCCCAGTTT 60.159 45.455 0.00 0.00 37.42 2.66
4571 4976 3.071312 TCTGCTTTCGTAACCCCAGTTTA 59.929 43.478 0.00 0.00 37.42 2.01
4572 4977 3.816523 CTGCTTTCGTAACCCCAGTTTAA 59.183 43.478 0.00 0.00 37.42 1.52
4580 4985 5.058490 CGTAACCCCAGTTTAACTCTGAAA 58.942 41.667 0.00 0.00 37.42 2.69
4586 4991 6.490381 ACCCCAGTTTAACTCTGAAATTCTTC 59.510 38.462 0.00 0.00 35.20 2.87
4590 4995 7.040823 CCAGTTTAACTCTGAAATTCTTCTGCT 60.041 37.037 0.00 0.00 35.20 4.24
4599 5004 5.132502 TGAAATTCTTCTGCTGTTCCTGAA 58.867 37.500 0.00 0.00 32.33 3.02
4606 5011 1.998315 CTGCTGTTCCTGAATCAGACG 59.002 52.381 12.53 0.00 32.44 4.18
4621 5026 2.991190 TCAGACGGTCGCTTTGTATTTC 59.009 45.455 1.89 0.00 0.00 2.17
4670 5075 1.133253 CCTTGAGCGATGCACAACG 59.867 57.895 0.00 0.00 34.57 4.10
4689 5094 0.462759 GCACCTCAAGATCTTCCCCG 60.463 60.000 4.57 0.00 0.00 5.73
4700 5105 0.679002 TCTTCCCCGTAGTGTCTCGG 60.679 60.000 0.00 0.00 45.42 4.63
4713 5118 6.581542 CGTAGTGTCTCGGGAAAATATACATC 59.418 42.308 0.00 0.00 0.00 3.06
4760 5166 8.460831 AAGAATCAACACTACAAAAACAACAC 57.539 30.769 0.00 0.00 0.00 3.32
4761 5167 7.598278 AGAATCAACACTACAAAAACAACACA 58.402 30.769 0.00 0.00 0.00 3.72
4778 5184 5.912396 ACAACACAACACAATAGCATAAACG 59.088 36.000 0.00 0.00 0.00 3.60
4802 5213 7.455008 ACGTATCTGAATAATTGGATCTAGGGT 59.545 37.037 0.00 0.00 0.00 4.34
4831 5242 5.655488 AGGACACGATTTCTCTATGTTCAG 58.345 41.667 0.00 0.00 0.00 3.02
4832 5243 4.806247 GGACACGATTTCTCTATGTTCAGG 59.194 45.833 0.00 0.00 0.00 3.86
4856 5267 5.532557 GCACTGCCAAAGAAAAATTAGACT 58.467 37.500 0.00 0.00 0.00 3.24
4857 5268 5.985530 GCACTGCCAAAGAAAAATTAGACTT 59.014 36.000 0.00 0.00 0.00 3.01
4858 5269 6.144563 GCACTGCCAAAGAAAAATTAGACTTC 59.855 38.462 0.00 0.00 0.00 3.01
4859 5270 7.202526 CACTGCCAAAGAAAAATTAGACTTCA 58.797 34.615 0.00 0.00 0.00 3.02
4862 5273 9.912634 CTGCCAAAGAAAAATTAGACTTCATTA 57.087 29.630 0.00 0.00 0.00 1.90
4910 5324 7.603024 GCATAATCTAGTCATTACCCTTGGTAC 59.397 40.741 0.00 0.00 37.97 3.34
4911 5325 5.786264 ATCTAGTCATTACCCTTGGTACG 57.214 43.478 0.00 0.00 37.97 3.67
4940 5354 5.153950 AGGAAGTACTAGCCAGAAAGTTG 57.846 43.478 14.98 0.00 0.00 3.16
4942 5356 4.315803 GAAGTACTAGCCAGAAAGTTGCA 58.684 43.478 0.00 0.00 0.00 4.08
4944 5358 4.911390 AGTACTAGCCAGAAAGTTGCAAT 58.089 39.130 0.59 0.00 0.00 3.56
4945 5359 4.697352 AGTACTAGCCAGAAAGTTGCAATG 59.303 41.667 0.59 0.00 0.00 2.82
4946 5360 2.821969 ACTAGCCAGAAAGTTGCAATGG 59.178 45.455 11.02 11.02 0.00 3.16
4949 5363 0.037046 CCAGAAAGTTGCAATGGGGC 60.037 55.000 0.59 0.00 0.00 5.80
4950 5364 0.388907 CAGAAAGTTGCAATGGGGCG 60.389 55.000 0.59 0.00 36.28 6.13
4952 5366 0.316841 GAAAGTTGCAATGGGGCGAA 59.683 50.000 0.59 0.00 36.28 4.70
4953 5367 0.033366 AAAGTTGCAATGGGGCGAAC 59.967 50.000 0.59 0.00 36.28 3.95
4954 5368 1.815817 AAGTTGCAATGGGGCGAACC 61.816 55.000 0.59 0.00 36.28 3.62
4961 5375 2.282816 TGGGGCGAACCATGGTTG 60.283 61.111 34.47 24.57 42.91 3.77
4964 5378 1.379843 GGGCGAACCATGGTTGGAT 60.380 57.895 35.57 14.95 46.92 3.41
4965 5379 1.666209 GGGCGAACCATGGTTGGATG 61.666 60.000 35.57 22.33 46.92 3.51
4988 5432 4.280929 GGTTGGTTTAAATTCTGGTGCTCT 59.719 41.667 0.00 0.00 0.00 4.09
5056 5547 0.749649 GGAGGAGACGATGACATGCT 59.250 55.000 0.00 0.00 0.00 3.79
5057 5548 1.957177 GGAGGAGACGATGACATGCTA 59.043 52.381 0.00 0.00 0.00 3.49
5063 5554 2.627221 AGACGATGACATGCTAGCTCAT 59.373 45.455 17.23 16.32 0.00 2.90
5065 5556 3.801698 ACGATGACATGCTAGCTCATTT 58.198 40.909 17.23 5.64 0.00 2.32
5066 5557 4.194640 ACGATGACATGCTAGCTCATTTT 58.805 39.130 17.23 5.31 0.00 1.82
5067 5558 4.272018 ACGATGACATGCTAGCTCATTTTC 59.728 41.667 17.23 5.52 0.00 2.29
5071 5562 4.874396 TGACATGCTAGCTCATTTTCTCAG 59.126 41.667 17.23 0.00 0.00 3.35
5090 5581 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
5096 5587 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
5099 5590 1.047034 ATAGGGGTAGGGTGTGCGTC 61.047 60.000 0.00 0.00 0.00 5.19
5104 5595 0.108945 GGTAGGGTGTGCGTCTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
5155 5646 0.037697 TGAGCGTTGGCGTCTGTATT 60.038 50.000 0.00 0.00 46.35 1.89
5161 5652 2.032377 CGTTGGCGTCTGTATTGTGTTT 60.032 45.455 0.00 0.00 0.00 2.83
5162 5653 3.296628 GTTGGCGTCTGTATTGTGTTTG 58.703 45.455 0.00 0.00 0.00 2.93
5163 5654 2.839975 TGGCGTCTGTATTGTGTTTGA 58.160 42.857 0.00 0.00 0.00 2.69
5164 5655 3.206964 TGGCGTCTGTATTGTGTTTGAA 58.793 40.909 0.00 0.00 0.00 2.69
5201 5692 3.431415 GGTTTTATTCAGGTTCAGGCCT 58.569 45.455 0.00 0.00 39.99 5.19
5203 5694 3.366052 TTTATTCAGGTTCAGGCCTCC 57.634 47.619 0.00 0.01 36.58 4.30
5204 5695 1.213296 TATTCAGGTTCAGGCCTCCC 58.787 55.000 0.00 2.82 36.58 4.30
5207 5698 3.322466 AGGTTCAGGCCTCCCGTG 61.322 66.667 0.00 0.00 32.39 4.94
5208 5699 3.319198 GGTTCAGGCCTCCCGTGA 61.319 66.667 0.00 0.00 35.76 4.35
5209 5700 2.266055 GTTCAGGCCTCCCGTGAG 59.734 66.667 0.00 0.00 38.42 3.51
5228 5719 5.404395 GTGAGGAGTAATACCCTATTCCCT 58.596 45.833 1.32 0.00 29.90 4.20
5233 5724 6.329460 AGGAGTAATACCCTATTCCCTGTTTC 59.671 42.308 0.00 0.00 29.90 2.78
5262 5753 1.796017 TTCATGGCGGGTATACCTCA 58.204 50.000 21.25 16.38 36.97 3.86
5301 5792 3.553096 GGGAGTGATGTATTGCTACCGAG 60.553 52.174 0.00 0.00 0.00 4.63
5317 5808 3.113824 ACCGAGAGTCTAAGTCTAGGGA 58.886 50.000 13.39 0.00 42.57 4.20
5340 5831 6.042093 GGAAGTAGATGATGTTGATAGTCCCA 59.958 42.308 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.733301 CCAAACGTTGGCATGCCA 59.267 55.556 35.59 35.59 45.17 4.92
74 75 6.751888 GCTAACCAAGTAGTTGCCAATATTTG 59.248 38.462 4.65 0.00 31.64 2.32
76 77 6.187682 AGCTAACCAAGTAGTTGCCAATATT 58.812 36.000 4.65 0.00 31.64 1.28
78 79 5.174037 AGCTAACCAAGTAGTTGCCAATA 57.826 39.130 4.65 0.00 31.64 1.90
79 80 4.034285 AGCTAACCAAGTAGTTGCCAAT 57.966 40.909 4.65 0.00 31.64 3.16
80 81 3.502123 AGCTAACCAAGTAGTTGCCAA 57.498 42.857 4.65 0.00 31.64 4.52
82 83 4.203654 AGTAGCTAACCAAGTAGTTGCC 57.796 45.455 4.65 0.00 31.64 4.52
83 84 5.235516 TCAAGTAGCTAACCAAGTAGTTGC 58.764 41.667 4.65 0.00 31.64 4.17
86 87 5.720041 TCCATCAAGTAGCTAACCAAGTAGT 59.280 40.000 0.00 0.00 0.00 2.73
88 89 5.395324 GCTCCATCAAGTAGCTAACCAAGTA 60.395 44.000 0.00 0.00 33.40 2.24
89 90 4.624125 GCTCCATCAAGTAGCTAACCAAGT 60.624 45.833 0.00 0.00 33.40 3.16
90 91 3.873952 GCTCCATCAAGTAGCTAACCAAG 59.126 47.826 0.00 0.00 33.40 3.61
91 92 3.519510 AGCTCCATCAAGTAGCTAACCAA 59.480 43.478 0.00 0.00 44.55 3.67
94 95 5.178797 TGAAAGCTCCATCAAGTAGCTAAC 58.821 41.667 0.00 0.00 45.61 2.34
95 96 5.420725 TGAAAGCTCCATCAAGTAGCTAA 57.579 39.130 0.00 0.00 45.61 3.09
98 99 4.612932 CTTGAAAGCTCCATCAAGTAGC 57.387 45.455 20.48 0.00 44.72 3.58
120 211 3.055240 CAGCCTCCTGTCTGATCTTCTTT 60.055 47.826 0.00 0.00 34.31 2.52
131 222 2.365635 TAGCCCCAGCCTCCTGTC 60.366 66.667 0.00 0.00 41.25 3.51
185 289 2.993853 CTCAACCTCCCTGCTCCC 59.006 66.667 0.00 0.00 0.00 4.30
245 349 2.560105 ACTTGCTCTTTCAATTGCTCCC 59.440 45.455 0.00 0.00 0.00 4.30
293 398 3.785505 GCAGCACATCGGAATTAGTTTCG 60.786 47.826 0.00 0.00 37.69 3.46
300 405 3.489738 GCTTATTGCAGCACATCGGAATT 60.490 43.478 0.00 0.00 42.31 2.17
352 457 2.345876 TCATGAATACAGCACCACACG 58.654 47.619 0.00 0.00 0.00 4.49
434 539 7.228706 GCTAAAACATGGGCTACATAGTTACAT 59.771 37.037 0.00 0.00 37.84 2.29
464 569 1.746615 CTCCGAACCAGTGCCATGG 60.747 63.158 7.63 7.63 46.47 3.66
471 576 1.977544 CTCCCGACTCCGAACCAGT 60.978 63.158 0.00 0.00 38.22 4.00
478 583 1.533469 AACTTGGTCTCCCGACTCCG 61.533 60.000 0.00 0.00 40.10 4.63
545 650 1.064537 TCATGCAGGCCAGCTAAATCA 60.065 47.619 21.82 0.00 34.99 2.57
562 667 8.882415 AAAACACGGACGATTATATTACTCAT 57.118 30.769 0.00 0.00 0.00 2.90
608 713 3.242413 CCGTTGCTTCCGATTTCATGTAG 60.242 47.826 0.00 0.00 0.00 2.74
609 714 2.675844 CCGTTGCTTCCGATTTCATGTA 59.324 45.455 0.00 0.00 0.00 2.29
610 715 1.468520 CCGTTGCTTCCGATTTCATGT 59.531 47.619 0.00 0.00 0.00 3.21
611 716 1.468520 ACCGTTGCTTCCGATTTCATG 59.531 47.619 0.00 0.00 0.00 3.07
612 717 1.737793 GACCGTTGCTTCCGATTTCAT 59.262 47.619 0.00 0.00 0.00 2.57
613 718 1.153353 GACCGTTGCTTCCGATTTCA 58.847 50.000 0.00 0.00 0.00 2.69
614 719 1.439679 AGACCGTTGCTTCCGATTTC 58.560 50.000 0.00 0.00 0.00 2.17
615 720 2.754946 TAGACCGTTGCTTCCGATTT 57.245 45.000 0.00 0.00 0.00 2.17
616 721 2.981859 ATAGACCGTTGCTTCCGATT 57.018 45.000 0.00 0.00 0.00 3.34
617 722 4.281182 AGATTATAGACCGTTGCTTCCGAT 59.719 41.667 0.00 0.00 0.00 4.18
618 723 3.635373 AGATTATAGACCGTTGCTTCCGA 59.365 43.478 0.00 0.00 0.00 4.55
619 724 3.978687 AGATTATAGACCGTTGCTTCCG 58.021 45.455 0.00 0.00 0.00 4.30
620 725 4.945246 TGAGATTATAGACCGTTGCTTCC 58.055 43.478 0.00 0.00 0.00 3.46
621 726 5.406780 CCATGAGATTATAGACCGTTGCTTC 59.593 44.000 0.00 0.00 0.00 3.86
622 727 5.163301 ACCATGAGATTATAGACCGTTGCTT 60.163 40.000 0.00 0.00 0.00 3.91
623 728 4.345257 ACCATGAGATTATAGACCGTTGCT 59.655 41.667 0.00 0.00 0.00 3.91
624 729 4.632153 ACCATGAGATTATAGACCGTTGC 58.368 43.478 0.00 0.00 0.00 4.17
625 730 8.833231 ATAAACCATGAGATTATAGACCGTTG 57.167 34.615 0.00 0.00 0.00 4.10
626 731 9.847224 AAATAAACCATGAGATTATAGACCGTT 57.153 29.630 0.00 0.00 0.00 4.44
627 732 9.847224 AAAATAAACCATGAGATTATAGACCGT 57.153 29.630 0.00 0.00 0.00 4.83
643 748 9.567776 TCACAGAATGAAGTCTAAAATAAACCA 57.432 29.630 0.00 0.00 39.69 3.67
649 754 9.606631 GGAGTATCACAGAATGAAGTCTAAAAT 57.393 33.333 0.00 0.00 41.93 1.82
650 755 8.041323 GGGAGTATCACAGAATGAAGTCTAAAA 58.959 37.037 0.00 0.00 39.41 1.52
651 756 7.400339 AGGGAGTATCACAGAATGAAGTCTAAA 59.600 37.037 0.00 0.00 45.06 1.85
652 757 6.897966 AGGGAGTATCACAGAATGAAGTCTAA 59.102 38.462 0.00 0.00 45.06 2.10
653 758 6.436027 AGGGAGTATCACAGAATGAAGTCTA 58.564 40.000 0.00 0.00 45.06 2.59
654 759 5.276440 AGGGAGTATCACAGAATGAAGTCT 58.724 41.667 0.00 0.00 45.06 3.24
655 760 5.452636 GGAGGGAGTATCACAGAATGAAGTC 60.453 48.000 0.00 0.00 45.06 3.01
656 761 4.407296 GGAGGGAGTATCACAGAATGAAGT 59.593 45.833 0.00 0.00 45.06 3.01
657 762 4.202305 GGGAGGGAGTATCACAGAATGAAG 60.202 50.000 0.00 0.00 45.06 3.02
658 763 3.711704 GGGAGGGAGTATCACAGAATGAA 59.288 47.826 0.00 0.00 45.06 2.57
659 764 3.051803 AGGGAGGGAGTATCACAGAATGA 60.052 47.826 0.00 0.00 45.06 2.57
660 765 3.312890 AGGGAGGGAGTATCACAGAATG 58.687 50.000 0.00 0.00 45.06 2.67
661 766 3.715648 AGGGAGGGAGTATCACAGAAT 57.284 47.619 0.00 0.00 45.06 2.40
662 767 3.491766 AAGGGAGGGAGTATCACAGAA 57.508 47.619 0.00 0.00 45.06 3.02
663 768 3.012959 AGAAAGGGAGGGAGTATCACAGA 59.987 47.826 0.00 0.00 45.06 3.41
664 769 3.133721 CAGAAAGGGAGGGAGTATCACAG 59.866 52.174 0.00 0.00 45.06 3.66
665 770 3.107601 CAGAAAGGGAGGGAGTATCACA 58.892 50.000 0.00 0.00 45.06 3.58
666 771 3.108376 ACAGAAAGGGAGGGAGTATCAC 58.892 50.000 0.00 0.00 40.51 3.06
667 772 3.491766 ACAGAAAGGGAGGGAGTATCA 57.508 47.619 0.00 0.00 36.25 2.15
668 773 5.367060 ACATTACAGAAAGGGAGGGAGTATC 59.633 44.000 0.00 0.00 0.00 2.24
669 774 5.289510 ACATTACAGAAAGGGAGGGAGTAT 58.710 41.667 0.00 0.00 0.00 2.12
670 775 4.695606 ACATTACAGAAAGGGAGGGAGTA 58.304 43.478 0.00 0.00 0.00 2.59
671 776 3.532102 ACATTACAGAAAGGGAGGGAGT 58.468 45.455 0.00 0.00 0.00 3.85
672 777 5.425539 TCTTACATTACAGAAAGGGAGGGAG 59.574 44.000 0.00 0.00 0.00 4.30
673 778 5.189145 GTCTTACATTACAGAAAGGGAGGGA 59.811 44.000 0.00 0.00 0.00 4.20
674 779 5.429130 GTCTTACATTACAGAAAGGGAGGG 58.571 45.833 0.00 0.00 0.00 4.30
675 780 5.109903 CGTCTTACATTACAGAAAGGGAGG 58.890 45.833 0.00 0.00 0.00 4.30
676 781 5.721232 ACGTCTTACATTACAGAAAGGGAG 58.279 41.667 0.00 0.00 0.00 4.30
677 782 5.733620 ACGTCTTACATTACAGAAAGGGA 57.266 39.130 0.00 0.00 0.00 4.20
678 783 6.796705 AAACGTCTTACATTACAGAAAGGG 57.203 37.500 0.00 0.00 0.00 3.95
710 815 7.052653 CACTACTGTGTCTACTGCTACAGCA 62.053 48.000 3.51 3.51 43.18 4.41
711 816 3.440872 ACTACTGTGTCTACTGCTACAGC 59.559 47.826 0.00 0.00 43.18 4.40
712 817 4.673061 GCACTACTGTGTCTACTGCTACAG 60.673 50.000 0.00 0.00 45.44 2.74
713 818 3.190744 GCACTACTGTGTCTACTGCTACA 59.809 47.826 0.00 0.00 45.44 2.74
714 819 3.728268 CGCACTACTGTGTCTACTGCTAC 60.728 52.174 0.00 0.00 45.44 3.58
715 820 2.418976 CGCACTACTGTGTCTACTGCTA 59.581 50.000 0.00 0.00 45.44 3.49
716 821 1.200252 CGCACTACTGTGTCTACTGCT 59.800 52.381 0.00 0.00 45.44 4.24
717 822 1.618861 CGCACTACTGTGTCTACTGC 58.381 55.000 0.00 0.00 45.44 4.40
718 823 1.068541 TGCGCACTACTGTGTCTACTG 60.069 52.381 5.66 0.00 45.44 2.74
725 830 1.886861 GAACCGTGCGCACTACTGTG 61.887 60.000 35.27 19.85 46.37 3.66
753 858 6.289834 TCTAGTGTGGAACCGTTTTATTTGA 58.710 36.000 0.00 0.00 34.36 2.69
1884 2067 4.344865 AGGTTGGCCGCGTCCATT 62.345 61.111 10.83 0.00 40.50 3.16
2040 2225 0.530744 TGAGTATGCTGACGGTGTCC 59.469 55.000 0.00 0.00 0.00 4.02
2176 2368 7.093814 ACAGTGCAGAAATCATAAAATTGGCTA 60.094 33.333 0.00 0.00 0.00 3.93
2200 2405 6.872920 AGGTAAAAACTCTGCAAAATTGACA 58.127 32.000 0.00 0.00 0.00 3.58
2221 2426 0.899720 TTAAGACCGGCGATCAAGGT 59.100 50.000 9.30 3.71 41.63 3.50
2230 2439 3.001330 CAGAACATCGATTTAAGACCGGC 59.999 47.826 0.00 0.00 0.00 6.13
2250 2459 6.359617 CGACCTGTACACAAAATAAAAAGCAG 59.640 38.462 0.00 0.00 0.00 4.24
2258 2467 3.404224 TGGCGACCTGTACACAAAATA 57.596 42.857 0.00 0.00 0.00 1.40
2259 2468 2.264005 TGGCGACCTGTACACAAAAT 57.736 45.000 0.00 0.00 0.00 1.82
2263 2472 1.518325 CAAATGGCGACCTGTACACA 58.482 50.000 0.00 0.00 0.00 3.72
2264 2473 0.168128 GCAAATGGCGACCTGTACAC 59.832 55.000 0.00 0.00 0.00 2.90
2265 2474 0.958382 GGCAAATGGCGACCTGTACA 60.958 55.000 0.00 0.00 46.16 2.90
2266 2475 0.676782 AGGCAAATGGCGACCTGTAC 60.677 55.000 0.98 0.00 46.16 2.90
2460 2670 0.251341 AGACCACCAATTCACCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
2461 2671 1.270550 CAAGACCACCAATTCACCAGC 59.729 52.381 0.00 0.00 0.00 4.85
2486 2697 8.715191 AAGCAACTTCATTAGACAGATTAGAG 57.285 34.615 0.00 0.00 0.00 2.43
2487 2698 9.507329 AAAAGCAACTTCATTAGACAGATTAGA 57.493 29.630 0.00 0.00 0.00 2.10
2488 2699 9.552114 CAAAAGCAACTTCATTAGACAGATTAG 57.448 33.333 0.00 0.00 0.00 1.73
2489 2700 9.066892 ACAAAAGCAACTTCATTAGACAGATTA 57.933 29.630 0.00 0.00 0.00 1.75
2491 2702 7.516198 ACAAAAGCAACTTCATTAGACAGAT 57.484 32.000 0.00 0.00 0.00 2.90
2495 2706 7.377131 GTCAGAACAAAAGCAACTTCATTAGAC 59.623 37.037 0.00 0.00 0.00 2.59
2496 2707 7.417612 GTCAGAACAAAAGCAACTTCATTAGA 58.582 34.615 0.00 0.00 0.00 2.10
2499 2710 5.036737 CGTCAGAACAAAAGCAACTTCATT 58.963 37.500 0.00 0.00 0.00 2.57
2501 2712 3.687212 TCGTCAGAACAAAAGCAACTTCA 59.313 39.130 0.00 0.00 0.00 3.02
2502 2713 4.273005 TCGTCAGAACAAAAGCAACTTC 57.727 40.909 0.00 0.00 0.00 3.01
2503 2714 4.900635 ATCGTCAGAACAAAAGCAACTT 57.099 36.364 0.00 0.00 0.00 2.66
2504 2715 5.617751 GCATATCGTCAGAACAAAAGCAACT 60.618 40.000 0.00 0.00 0.00 3.16
2505 2716 4.554973 GCATATCGTCAGAACAAAAGCAAC 59.445 41.667 0.00 0.00 0.00 4.17
2506 2717 4.215185 TGCATATCGTCAGAACAAAAGCAA 59.785 37.500 0.00 0.00 0.00 3.91
2507 2718 3.750652 TGCATATCGTCAGAACAAAAGCA 59.249 39.130 0.00 0.00 0.00 3.91
2508 2719 4.340894 TGCATATCGTCAGAACAAAAGC 57.659 40.909 0.00 0.00 0.00 3.51
2509 2720 7.379529 AGTTTTTGCATATCGTCAGAACAAAAG 59.620 33.333 0.00 0.00 37.00 2.27
2510 2721 7.167302 CAGTTTTTGCATATCGTCAGAACAAAA 59.833 33.333 0.00 0.00 34.69 2.44
2513 2724 5.688823 CAGTTTTTGCATATCGTCAGAACA 58.311 37.500 0.00 0.00 0.00 3.18
2538 2749 2.877866 ACAGAGCAGGTACAGTACAGT 58.122 47.619 12.89 0.00 0.00 3.55
2539 2750 3.508012 AGAACAGAGCAGGTACAGTACAG 59.492 47.826 12.89 5.65 0.00 2.74
2540 2751 3.255888 CAGAACAGAGCAGGTACAGTACA 59.744 47.826 12.89 0.00 0.00 2.90
2541 2752 3.506455 TCAGAACAGAGCAGGTACAGTAC 59.494 47.826 1.59 1.59 0.00 2.73
2542 2753 3.506455 GTCAGAACAGAGCAGGTACAGTA 59.494 47.826 0.00 0.00 0.00 2.74
2832 3211 4.988540 CCGACAGTCTCTGTTAACATCAAA 59.011 41.667 9.13 0.00 45.44 2.69
2905 3284 5.407407 TCATACCTGAAGAGTGAAGAACC 57.593 43.478 0.00 0.00 0.00 3.62
3039 3418 1.039068 CCCTCTGATGCAGTCGATCT 58.961 55.000 0.00 0.00 32.61 2.75
3043 3422 1.226802 CGACCCTCTGATGCAGTCG 60.227 63.158 7.82 7.82 43.52 4.18
3060 3439 0.806102 CGGCCTCATACTGTCCAACG 60.806 60.000 0.00 0.00 0.00 4.10
3090 3469 0.251653 ACCGTAGAACAGCCTCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
3129 3508 4.845580 CCAGTAGGCTGCTGCGGG 62.846 72.222 25.04 9.87 41.26 6.13
3180 3559 1.515521 CCTTGGCGAGCTCGGTTTTT 61.516 55.000 35.10 0.00 40.23 1.94
3310 3689 5.842619 GCATGATGAACTATGCTGAGTAG 57.157 43.478 0.00 0.00 44.70 2.57
3320 3699 5.453762 CCATAGTGGTGAGCATGATGAACTA 60.454 44.000 0.00 0.00 31.35 2.24
3322 3701 3.562973 CCATAGTGGTGAGCATGATGAAC 59.437 47.826 0.00 0.00 31.35 3.18
3326 3705 3.393609 ACATCCATAGTGGTGAGCATGAT 59.606 43.478 0.00 0.00 39.03 2.45
3327 3706 2.773661 ACATCCATAGTGGTGAGCATGA 59.226 45.455 0.00 0.00 39.03 3.07
3328 3707 2.876550 CACATCCATAGTGGTGAGCATG 59.123 50.000 0.00 0.00 39.03 4.06
3340 3719 7.886446 AGAAATCACATATGATGCACATCCATA 59.114 33.333 10.38 6.68 45.26 2.74
3359 3738 6.150976 ACAACAAGTTCACAAGTCAGAAATCA 59.849 34.615 0.00 0.00 0.00 2.57
3395 3781 4.386761 CCCCCTTCTTCATGACCAACATAT 60.387 45.833 0.00 0.00 37.46 1.78
3398 3784 1.075374 CCCCCTTCTTCATGACCAACA 59.925 52.381 0.00 0.00 0.00 3.33
3428 3814 1.515020 CCTCCTCCTCACTTGCTCG 59.485 63.158 0.00 0.00 0.00 5.03
3497 3883 1.202698 ACCTGGAGCAGAGTGTTGAAC 60.203 52.381 0.00 0.00 32.44 3.18
3566 3952 3.704061 TCATGATGATCACCGTGTTCCTA 59.296 43.478 9.18 0.00 0.00 2.94
3575 3961 3.629398 GGTTTGAGGTCATGATGATCACC 59.371 47.826 8.60 2.90 27.47 4.02
3593 3979 4.947147 TGCTCCGCGCCAAGGTTT 62.947 61.111 0.00 0.00 38.05 3.27
3635 4021 1.000394 TCACGAGCAACCTTCATCGAA 60.000 47.619 0.00 0.00 38.50 3.71
3653 4039 0.835276 CCTCCTGCATGACCAGATCA 59.165 55.000 0.00 0.00 43.13 2.92
3659 4045 2.700897 AGTACATACCTCCTGCATGACC 59.299 50.000 0.00 0.00 0.00 4.02
3743 4137 2.733552 CAGGTGAACATTCTCACTCACG 59.266 50.000 3.94 0.00 44.33 4.35
3745 4139 2.104622 TGCAGGTGAACATTCTCACTCA 59.895 45.455 3.94 0.00 44.33 3.41
3749 4143 2.189594 CCTGCAGGTGAACATTCTCA 57.810 50.000 25.53 0.00 0.00 3.27
3839 4233 3.596066 GACCTTCCGCAGCTGCTCA 62.596 63.158 34.22 18.95 39.32 4.26
3860 4254 3.264947 CACATCTTTCATCTGAAGCCGA 58.735 45.455 0.00 0.00 35.21 5.54
4007 4401 8.455682 AGTTAGAATCTACGAGCTATAAGATGC 58.544 37.037 5.25 3.92 0.00 3.91
4009 4403 8.875803 CGAGTTAGAATCTACGAGCTATAAGAT 58.124 37.037 0.00 0.00 0.00 2.40
4010 4404 7.331440 CCGAGTTAGAATCTACGAGCTATAAGA 59.669 40.741 0.00 0.00 0.00 2.10
4011 4405 7.118101 ACCGAGTTAGAATCTACGAGCTATAAG 59.882 40.741 0.00 0.00 0.00 1.73
4013 4407 6.368243 CACCGAGTTAGAATCTACGAGCTATA 59.632 42.308 0.00 0.00 0.00 1.31
4015 4409 4.510711 CACCGAGTTAGAATCTACGAGCTA 59.489 45.833 0.00 0.00 0.00 3.32
4017 4411 3.311871 TCACCGAGTTAGAATCTACGAGC 59.688 47.826 0.00 0.00 0.00 5.03
4018 4412 4.331992 TGTCACCGAGTTAGAATCTACGAG 59.668 45.833 0.00 0.00 0.00 4.18
4020 4414 4.611310 TGTCACCGAGTTAGAATCTACG 57.389 45.455 0.00 0.00 0.00 3.51
4082 4485 1.539388 CCTCTTCTCGATCCATCTCCG 59.461 57.143 0.00 0.00 0.00 4.63
4117 4520 0.933097 CGCGGATCAACATCTTGGAG 59.067 55.000 0.00 0.00 0.00 3.86
4261 4664 2.822215 TCCGCTAGGAACCTGGATC 58.178 57.895 8.37 0.00 45.12 3.36
4334 4737 3.063084 GTCGTCCACCTCTCCGCT 61.063 66.667 0.00 0.00 0.00 5.52
4447 4852 3.119849 CCTAAATCAGCACGGTCCAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
4536 4941 6.124088 ACGAAAGCAGAATAATCACAATCC 57.876 37.500 0.00 0.00 0.00 3.01
4549 4954 1.053424 ACTGGGGTTACGAAAGCAGA 58.947 50.000 0.00 0.00 34.70 4.26
4550 4955 1.892209 AACTGGGGTTACGAAAGCAG 58.108 50.000 0.00 0.00 34.70 4.24
4552 4957 3.817084 AGTTAAACTGGGGTTACGAAAGC 59.183 43.478 0.00 0.00 34.90 3.51
4553 4958 5.178809 CAGAGTTAAACTGGGGTTACGAAAG 59.821 44.000 0.00 0.00 34.90 2.62
4556 4961 3.896888 TCAGAGTTAAACTGGGGTTACGA 59.103 43.478 9.89 0.00 36.22 3.43
4557 4962 4.261578 TCAGAGTTAAACTGGGGTTACG 57.738 45.455 9.89 0.00 36.22 3.18
4558 4963 7.447545 AGAATTTCAGAGTTAAACTGGGGTTAC 59.552 37.037 9.89 0.00 36.22 2.50
4559 4964 7.523415 AGAATTTCAGAGTTAAACTGGGGTTA 58.477 34.615 9.89 0.00 36.22 2.85
4560 4965 6.373759 AGAATTTCAGAGTTAAACTGGGGTT 58.626 36.000 9.89 4.35 36.22 4.11
4561 4966 5.953571 AGAATTTCAGAGTTAAACTGGGGT 58.046 37.500 9.89 0.00 36.22 4.95
4564 4969 7.040823 AGCAGAAGAATTTCAGAGTTAAACTGG 60.041 37.037 9.89 0.00 35.70 4.00
4565 4970 7.802251 CAGCAGAAGAATTTCAGAGTTAAACTG 59.198 37.037 0.00 5.01 35.70 3.16
4566 4971 7.500559 ACAGCAGAAGAATTTCAGAGTTAAACT 59.499 33.333 0.00 0.00 35.70 2.66
4567 4972 7.643579 ACAGCAGAAGAATTTCAGAGTTAAAC 58.356 34.615 0.00 0.00 35.70 2.01
4570 4975 6.428159 GGAACAGCAGAAGAATTTCAGAGTTA 59.572 38.462 0.00 0.00 35.70 2.24
4571 4976 5.240403 GGAACAGCAGAAGAATTTCAGAGTT 59.760 40.000 0.00 0.00 35.70 3.01
4572 4977 4.759183 GGAACAGCAGAAGAATTTCAGAGT 59.241 41.667 0.00 0.00 35.70 3.24
4580 4985 4.914983 TGATTCAGGAACAGCAGAAGAAT 58.085 39.130 0.00 0.00 0.00 2.40
4586 4991 1.998315 CGTCTGATTCAGGAACAGCAG 59.002 52.381 13.59 0.00 31.51 4.24
4590 4995 1.067846 CGACCGTCTGATTCAGGAACA 60.068 52.381 13.59 0.00 31.51 3.18
4599 5004 2.961526 ATACAAAGCGACCGTCTGAT 57.038 45.000 0.00 0.00 0.00 2.90
4606 5011 1.664151 CTCCCGAAATACAAAGCGACC 59.336 52.381 0.00 0.00 0.00 4.79
4631 5036 3.727227 GGCTTAAGTTTCAACGAAAACGG 59.273 43.478 4.02 0.00 42.63 4.44
4667 5072 1.339151 GGGAAGATCTTGAGGTGCGTT 60.339 52.381 14.00 0.00 0.00 4.84
4670 5075 0.462759 CGGGGAAGATCTTGAGGTGC 60.463 60.000 14.00 0.00 0.00 5.01
4675 5080 2.758979 GACACTACGGGGAAGATCTTGA 59.241 50.000 14.00 0.00 0.00 3.02
4689 5094 6.581542 CGATGTATATTTTCCCGAGACACTAC 59.418 42.308 0.00 0.00 0.00 2.73
4734 5140 8.921670 GTGTTGTTTTTGTAGTGTTGATTCTTT 58.078 29.630 0.00 0.00 0.00 2.52
4744 5150 6.755461 TTGTGTTGTGTTGTTTTTGTAGTG 57.245 33.333 0.00 0.00 0.00 2.74
4749 5155 6.400579 TGCTATTGTGTTGTGTTGTTTTTG 57.599 33.333 0.00 0.00 0.00 2.44
4760 5166 7.905126 TCAGATACGTTTATGCTATTGTGTTG 58.095 34.615 0.00 0.00 0.00 3.33
4761 5167 8.487313 TTCAGATACGTTTATGCTATTGTGTT 57.513 30.769 0.00 0.00 0.00 3.32
4802 5213 7.383687 ACATAGAGAAATCGTGTCCTTGTAAA 58.616 34.615 0.00 0.00 0.00 2.01
4872 5283 6.877322 TGACTAGATTATGCACCATCATCATG 59.123 38.462 9.15 0.00 29.75 3.07
4874 5285 6.423776 TGACTAGATTATGCACCATCATCA 57.576 37.500 9.15 6.96 29.75 3.07
4875 5286 7.918536 AATGACTAGATTATGCACCATCATC 57.081 36.000 9.15 4.97 0.00 2.92
4877 5288 7.161404 GGTAATGACTAGATTATGCACCATCA 58.839 38.462 9.15 0.00 0.00 3.07
4940 5354 2.495866 CATGGTTCGCCCCATTGC 59.504 61.111 3.22 0.00 42.70 3.56
4942 5356 1.078347 AACCATGGTTCGCCCCATT 59.922 52.632 24.86 0.00 42.70 3.16
4944 5358 2.282816 CAACCATGGTTCGCCCCA 60.283 61.111 27.56 0.00 39.27 4.96
4945 5359 3.068064 CCAACCATGGTTCGCCCC 61.068 66.667 27.56 0.00 42.18 5.80
4954 5368 4.881019 TTAAACCAACCATCCAACCATG 57.119 40.909 0.00 0.00 0.00 3.66
4956 5370 5.604650 AGAATTTAAACCAACCATCCAACCA 59.395 36.000 0.00 0.00 0.00 3.67
4957 5371 5.931724 CAGAATTTAAACCAACCATCCAACC 59.068 40.000 0.00 0.00 0.00 3.77
4958 5372 5.931724 CCAGAATTTAAACCAACCATCCAAC 59.068 40.000 0.00 0.00 0.00 3.77
4959 5373 5.604650 ACCAGAATTTAAACCAACCATCCAA 59.395 36.000 0.00 0.00 0.00 3.53
4960 5374 5.011533 CACCAGAATTTAAACCAACCATCCA 59.988 40.000 0.00 0.00 0.00 3.41
4961 5375 5.478407 CACCAGAATTTAAACCAACCATCC 58.522 41.667 0.00 0.00 0.00 3.51
4962 5376 4.929211 GCACCAGAATTTAAACCAACCATC 59.071 41.667 0.00 0.00 0.00 3.51
4964 5378 3.964031 AGCACCAGAATTTAAACCAACCA 59.036 39.130 0.00 0.00 0.00 3.67
4965 5379 4.280929 AGAGCACCAGAATTTAAACCAACC 59.719 41.667 0.00 0.00 0.00 3.77
4967 5381 5.136828 TGAGAGCACCAGAATTTAAACCAA 58.863 37.500 0.00 0.00 0.00 3.67
4969 5383 5.904362 ATGAGAGCACCAGAATTTAAACC 57.096 39.130 0.00 0.00 0.00 3.27
4970 5384 9.860898 AATAAATGAGAGCACCAGAATTTAAAC 57.139 29.630 0.00 0.00 0.00 2.01
5009 5453 2.642995 CGCGTATCGTCGGAAATTCTA 58.357 47.619 0.00 0.00 0.00 2.10
5027 5471 1.079750 GTCTCCTCCCACTGAACGC 60.080 63.158 0.00 0.00 0.00 4.84
5032 5476 0.457851 GTCATCGTCTCCTCCCACTG 59.542 60.000 0.00 0.00 0.00 3.66
5056 5547 3.517100 AGCACCTCTGAGAAAATGAGCTA 59.483 43.478 6.17 0.00 0.00 3.32
5057 5548 2.305343 AGCACCTCTGAGAAAATGAGCT 59.695 45.455 6.17 1.81 0.00 4.09
5063 5554 3.198635 CCCTATGAGCACCTCTGAGAAAA 59.801 47.826 6.17 0.00 0.00 2.29
5065 5556 2.392662 CCCTATGAGCACCTCTGAGAA 58.607 52.381 6.17 0.00 0.00 2.87
5066 5557 1.412217 CCCCTATGAGCACCTCTGAGA 60.412 57.143 6.17 0.00 0.00 3.27
5067 5558 1.047002 CCCCTATGAGCACCTCTGAG 58.953 60.000 0.00 0.00 0.00 3.35
5071 5562 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
5099 5590 1.338337 CTCACCCCTATGAGCGTACAG 59.662 57.143 0.00 0.00 39.77 2.74
5107 5598 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
5108 5599 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
5109 5600 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
5110 5601 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
5111 5602 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
5142 5633 3.206964 TCAAACACAATACAGACGCCAA 58.793 40.909 0.00 0.00 0.00 4.52
5171 5662 6.778069 TGAACCTGAATAAAACCCATGTGTAA 59.222 34.615 0.00 0.00 0.00 2.41
5201 5692 1.572415 AGGGTATTACTCCTCACGGGA 59.428 52.381 0.00 0.00 42.77 5.14
5203 5694 4.220163 GGAATAGGGTATTACTCCTCACGG 59.780 50.000 7.02 0.00 34.75 4.94
5204 5695 4.220163 GGGAATAGGGTATTACTCCTCACG 59.780 50.000 7.02 0.00 34.75 4.35
5207 5698 5.404395 ACAGGGAATAGGGTATTACTCCTC 58.596 45.833 7.02 0.00 34.75 3.71
5208 5699 5.435545 ACAGGGAATAGGGTATTACTCCT 57.564 43.478 8.38 8.38 37.18 3.69
5209 5700 6.511017 AAACAGGGAATAGGGTATTACTCC 57.489 41.667 0.00 0.00 0.00 3.85
5228 5719 4.541779 GCCATGAATAACAACACGAAACA 58.458 39.130 0.00 0.00 0.00 2.83
5233 5724 1.202132 CCCGCCATGAATAACAACACG 60.202 52.381 0.00 0.00 0.00 4.49
5262 5753 4.103785 CACTCCCATTGTAATCCCTCTCAT 59.896 45.833 0.00 0.00 0.00 2.90
5275 5766 4.516698 GGTAGCAATACATCACTCCCATTG 59.483 45.833 0.00 0.00 0.00 2.82
5301 5792 7.511268 TCATCTACTTCCCTAGACTTAGACTC 58.489 42.308 0.00 0.00 0.00 3.36
5317 5808 7.623999 ATGGGACTATCAACATCATCTACTT 57.376 36.000 0.00 0.00 0.00 2.24
5340 5831 4.225942 CCATGTATATGAGGTGGTGGCTAT 59.774 45.833 0.25 0.00 36.36 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.