Multiple sequence alignment - TraesCS3D01G272900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G272900 chr3D 100.000 2717 0 0 1 2717 378528330 378531046 0.000000e+00 5018.0
1 TraesCS3D01G272900 chr3D 78.929 280 45 12 356 634 48347395 48347661 7.730000e-41 178.0
2 TraesCS3D01G272900 chr3A 92.391 1485 59 20 917 2350 502490306 502491787 0.000000e+00 2067.0
3 TraesCS3D01G272900 chr3A 86.727 776 75 19 75 844 502489000 502489753 0.000000e+00 837.0
4 TraesCS3D01G272900 chr3A 76.371 237 40 11 1182 1413 553561073 553561298 2.210000e-21 113.0
5 TraesCS3D01G272900 chr3B 92.951 1447 44 16 682 2098 493584273 493585691 0.000000e+00 2054.0
6 TraesCS3D01G272900 chr3B 86.969 353 17 6 2094 2426 493585733 493586076 1.190000e-98 370.0
7 TraesCS3D01G272900 chr3B 76.793 237 39 13 1182 1413 152962465 152962240 4.750000e-23 119.0
8 TraesCS3D01G272900 chr3B 94.872 39 1 1 23 60 665315465 665315427 2.920000e-05 60.2
9 TraesCS3D01G272900 chr2B 86.990 392 14 18 2094 2465 342171003 342170629 9.060000e-110 407.0
10 TraesCS3D01G272900 chr2B 77.143 455 72 16 184 634 373112799 373112373 4.520000e-58 235.0
11 TraesCS3D01G272900 chr2B 95.035 141 7 0 1911 2051 342171214 342171074 3.520000e-54 222.0
12 TraesCS3D01G272900 chr2B 79.444 180 36 1 281 459 13489636 13489457 2.840000e-25 126.0
13 TraesCS3D01G272900 chr6A 86.480 392 16 18 2094 2465 421535135 421535509 1.960000e-106 396.0
14 TraesCS3D01G272900 chr6A 95.625 160 7 0 1891 2050 421534904 421535063 9.650000e-65 257.0
15 TraesCS3D01G272900 chr6A 75.815 368 62 24 279 634 562267013 562266661 7.790000e-36 161.0
16 TraesCS3D01G272900 chr7B 86.410 390 16 18 2096 2465 399533500 399533872 2.540000e-105 392.0
17 TraesCS3D01G272900 chr7B 95.652 161 7 0 1891 2051 399533267 399533427 2.680000e-65 259.0
18 TraesCS3D01G272900 chr7A 85.969 392 18 18 2094 2465 285046678 285047052 4.240000e-103 385.0
19 TraesCS3D01G272900 chr7A 95.625 160 7 0 1891 2050 285046447 285046606 9.650000e-65 257.0
20 TraesCS3D01G272900 chr4B 85.459 392 20 21 2094 2465 162842702 162842328 9.190000e-100 374.0
21 TraesCS3D01G272900 chr4B 91.477 176 15 0 1891 2066 162842933 162842758 2.700000e-60 243.0
22 TraesCS3D01G272900 chr4B 86.400 125 16 1 510 634 389121993 389122116 4.720000e-28 135.0
23 TraesCS3D01G272900 chr2D 95.652 230 9 1 2489 2717 590339789 590340018 4.270000e-98 368.0
24 TraesCS3D01G272900 chr2D 94.805 231 10 2 2489 2717 612710337 612710107 2.570000e-95 359.0
25 TraesCS3D01G272900 chr2D 93.913 230 11 3 2489 2717 481969306 481969079 7.200000e-91 344.0
26 TraesCS3D01G272900 chr2D 80.935 278 41 7 358 634 304268289 304268023 2.740000e-50 209.0
27 TraesCS3D01G272900 chr2D 78.680 197 37 5 272 467 566281273 566281465 2.840000e-25 126.0
28 TraesCS3D01G272900 chr2D 84.112 107 17 0 356 462 192667796 192667690 1.330000e-18 104.0
29 TraesCS3D01G272900 chr1A 85.166 391 23 18 2094 2465 351139843 351139469 4.270000e-98 368.0
30 TraesCS3D01G272900 chr1A 76.084 761 110 50 1014 1736 528103039 528102313 5.610000e-87 331.0
31 TraesCS3D01G272900 chr1A 95.000 160 8 0 1891 2050 351140074 351139915 4.490000e-63 252.0
32 TraesCS3D01G272900 chr1D 95.217 230 10 1 2489 2717 375946424 375946195 1.990000e-96 363.0
33 TraesCS3D01G272900 chr1D 76.680 729 97 41 1006 1695 430482143 430481449 1.210000e-88 337.0
34 TraesCS3D01G272900 chr1D 77.273 462 67 25 189 634 104575689 104576128 1.260000e-58 237.0
35 TraesCS3D01G272900 chr1D 75.476 473 79 26 185 634 297381175 297380717 2.130000e-46 196.0
36 TraesCS3D01G272900 chr1D 79.253 241 36 10 396 634 475881704 475881932 3.620000e-34 156.0
37 TraesCS3D01G272900 chr7D 94.805 231 10 2 2489 2717 514881679 514881449 2.570000e-95 359.0
38 TraesCS3D01G272900 chr7D 93.966 232 11 2 2489 2717 511139028 511139259 5.570000e-92 348.0
39 TraesCS3D01G272900 chr7D 77.239 268 40 15 281 543 136264349 136264600 1.310000e-28 137.0
40 TraesCS3D01G272900 chr1B 77.103 725 100 43 1014 1705 581596283 581595592 2.570000e-95 359.0
41 TraesCS3D01G272900 chr6D 94.783 230 11 1 2489 2717 460582814 460582585 9.250000e-95 357.0
42 TraesCS3D01G272900 chr6D 93.478 230 14 1 2489 2717 384444259 384444488 9.320000e-90 340.0
43 TraesCS3D01G272900 chr2A 92.308 247 18 1 2472 2717 745238213 745238459 1.550000e-92 350.0
44 TraesCS3D01G272900 chr2A 74.449 454 83 21 184 634 382326157 382325734 6.020000e-37 165.0
45 TraesCS3D01G272900 chr4D 87.826 115 13 1 509 623 498630407 498630294 1.700000e-27 134.0
46 TraesCS3D01G272900 chr4D 86.207 58 2 5 26 77 116098988 116099045 1.050000e-04 58.4
47 TraesCS3D01G272900 chr5D 100.000 48 0 0 2273 2320 511208131 511208084 3.730000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G272900 chr3D 378528330 378531046 2716 False 5018.0 5018 100.0000 1 2717 1 chr3D.!!$F2 2716
1 TraesCS3D01G272900 chr3A 502489000 502491787 2787 False 1452.0 2067 89.5590 75 2350 2 chr3A.!!$F2 2275
2 TraesCS3D01G272900 chr3B 493584273 493586076 1803 False 1212.0 2054 89.9600 682 2426 2 chr3B.!!$F1 1744
3 TraesCS3D01G272900 chr2B 342170629 342171214 585 True 314.5 407 91.0125 1911 2465 2 chr2B.!!$R3 554
4 TraesCS3D01G272900 chr6A 421534904 421535509 605 False 326.5 396 91.0525 1891 2465 2 chr6A.!!$F1 574
5 TraesCS3D01G272900 chr7B 399533267 399533872 605 False 325.5 392 91.0310 1891 2465 2 chr7B.!!$F1 574
6 TraesCS3D01G272900 chr7A 285046447 285047052 605 False 321.0 385 90.7970 1891 2465 2 chr7A.!!$F1 574
7 TraesCS3D01G272900 chr4B 162842328 162842933 605 True 308.5 374 88.4680 1891 2465 2 chr4B.!!$R1 574
8 TraesCS3D01G272900 chr1A 528102313 528103039 726 True 331.0 331 76.0840 1014 1736 1 chr1A.!!$R1 722
9 TraesCS3D01G272900 chr1A 351139469 351140074 605 True 310.0 368 90.0830 1891 2465 2 chr1A.!!$R2 574
10 TraesCS3D01G272900 chr1D 430481449 430482143 694 True 337.0 337 76.6800 1006 1695 1 chr1D.!!$R3 689
11 TraesCS3D01G272900 chr1B 581595592 581596283 691 True 359.0 359 77.1030 1014 1705 1 chr1B.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 356 0.041238 CGGATATGGGAGGCCTAGGA 59.959 60.0 14.75 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2973 1.079543 CCTCGAGGACTGCTGGTTG 60.08 63.158 28.21 0.0 37.39 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.905415 TTGGATTGCCACCAAGAGAT 57.095 45.000 0.00 0.00 45.94 2.75
20 21 2.905415 TGGATTGCCACCAAGAGATT 57.095 45.000 0.00 0.00 39.92 2.40
21 22 2.449464 TGGATTGCCACCAAGAGATTG 58.551 47.619 0.00 0.00 39.92 2.67
22 23 2.225091 TGGATTGCCACCAAGAGATTGT 60.225 45.455 0.00 0.00 39.92 2.71
23 24 2.827921 GGATTGCCACCAAGAGATTGTT 59.172 45.455 0.00 0.00 33.80 2.83
24 25 3.367703 GGATTGCCACCAAGAGATTGTTG 60.368 47.826 0.00 0.00 33.80 3.33
32 33 3.383761 CCAAGAGATTGTTGGTTTGTGC 58.616 45.455 0.00 0.00 39.82 4.57
33 34 3.383761 CAAGAGATTGTTGGTTTGTGCC 58.616 45.455 0.00 0.00 0.00 5.01
34 35 2.949447 AGAGATTGTTGGTTTGTGCCT 58.051 42.857 0.00 0.00 0.00 4.75
35 36 3.299503 AGAGATTGTTGGTTTGTGCCTT 58.700 40.909 0.00 0.00 0.00 4.35
36 37 3.068590 AGAGATTGTTGGTTTGTGCCTTG 59.931 43.478 0.00 0.00 0.00 3.61
37 38 2.102925 AGATTGTTGGTTTGTGCCTTGG 59.897 45.455 0.00 0.00 0.00 3.61
38 39 0.107945 TTGTTGGTTTGTGCCTTGGC 60.108 50.000 4.43 4.43 0.00 4.52
39 40 0.975040 TGTTGGTTTGTGCCTTGGCT 60.975 50.000 13.18 0.00 0.00 4.75
40 41 0.177836 GTTGGTTTGTGCCTTGGCTT 59.822 50.000 13.18 0.00 0.00 4.35
41 42 1.410882 GTTGGTTTGTGCCTTGGCTTA 59.589 47.619 13.18 0.00 0.00 3.09
42 43 1.781786 TGGTTTGTGCCTTGGCTTAA 58.218 45.000 13.18 5.28 0.00 1.85
43 44 2.324541 TGGTTTGTGCCTTGGCTTAAT 58.675 42.857 13.18 0.00 0.00 1.40
44 45 3.501349 TGGTTTGTGCCTTGGCTTAATA 58.499 40.909 13.18 0.00 0.00 0.98
45 46 3.898123 TGGTTTGTGCCTTGGCTTAATAA 59.102 39.130 13.18 0.00 0.00 1.40
46 47 4.345257 TGGTTTGTGCCTTGGCTTAATAAA 59.655 37.500 13.18 1.31 0.00 1.40
47 48 4.929211 GGTTTGTGCCTTGGCTTAATAAAG 59.071 41.667 13.18 0.00 35.68 1.85
48 49 5.510690 GGTTTGTGCCTTGGCTTAATAAAGT 60.511 40.000 13.18 0.00 34.99 2.66
49 50 5.799827 TTGTGCCTTGGCTTAATAAAGTT 57.200 34.783 13.18 0.00 34.99 2.66
50 51 5.132897 TGTGCCTTGGCTTAATAAAGTTG 57.867 39.130 13.18 0.00 34.99 3.16
51 52 4.021544 TGTGCCTTGGCTTAATAAAGTTGG 60.022 41.667 13.18 0.00 34.99 3.77
52 53 3.513515 TGCCTTGGCTTAATAAAGTTGGG 59.486 43.478 13.18 0.00 34.99 4.12
53 54 3.118775 GCCTTGGCTTAATAAAGTTGGGG 60.119 47.826 4.11 0.00 34.99 4.96
54 55 3.118775 CCTTGGCTTAATAAAGTTGGGGC 60.119 47.826 0.00 0.00 34.99 5.80
55 56 3.176924 TGGCTTAATAAAGTTGGGGCA 57.823 42.857 0.00 0.00 34.99 5.36
56 57 3.096092 TGGCTTAATAAAGTTGGGGCAG 58.904 45.455 0.00 0.00 34.99 4.85
57 58 2.430694 GGCTTAATAAAGTTGGGGCAGG 59.569 50.000 0.00 0.00 34.99 4.85
58 59 2.430694 GCTTAATAAAGTTGGGGCAGGG 59.569 50.000 0.00 0.00 34.99 4.45
59 60 3.880117 GCTTAATAAAGTTGGGGCAGGGA 60.880 47.826 0.00 0.00 34.99 4.20
60 61 4.349365 CTTAATAAAGTTGGGGCAGGGAA 58.651 43.478 0.00 0.00 0.00 3.97
61 62 2.231716 ATAAAGTTGGGGCAGGGAAC 57.768 50.000 0.00 0.00 0.00 3.62
115 119 5.596836 ACAATTGAGGCTTGTTCTGAAAA 57.403 34.783 13.59 0.00 33.10 2.29
159 163 1.150567 CTATGTGAGCTCGCACCAGC 61.151 60.000 31.10 4.97 39.39 4.85
161 165 2.666190 GTGAGCTCGCACCAGCAA 60.666 61.111 22.25 0.00 42.40 3.91
165 169 4.374702 GCTCGCACCAGCAACACG 62.375 66.667 0.00 0.00 42.27 4.49
205 209 0.692476 AGAGCATGTACAGTTGGGCA 59.308 50.000 0.33 0.00 0.00 5.36
226 231 1.453197 CAAACCCCCTCCATACGCC 60.453 63.158 0.00 0.00 0.00 5.68
265 270 2.140717 AGTGACCGGTAAAAGAAAGCG 58.859 47.619 7.34 0.00 37.58 4.68
267 272 2.096565 GTGACCGGTAAAAGAAAGCGAC 60.097 50.000 7.34 0.00 40.11 5.19
270 275 1.609841 CCGGTAAAAGAAAGCGACCCT 60.610 52.381 0.00 0.00 40.11 4.34
272 277 2.774687 GGTAAAAGAAAGCGACCCTGA 58.225 47.619 0.00 0.00 0.00 3.86
273 278 3.344515 GGTAAAAGAAAGCGACCCTGAT 58.655 45.455 0.00 0.00 0.00 2.90
275 280 1.826385 AAAGAAAGCGACCCTGATGG 58.174 50.000 0.00 0.00 41.37 3.51
290 295 3.282374 ATGGGCGTCTCAAACCCCC 62.282 63.158 0.00 0.00 45.15 5.40
293 298 2.359975 GCGTCTCAAACCCCCAGG 60.360 66.667 0.00 0.00 40.04 4.45
298 303 1.303643 CTCAAACCCCCAGGCTGAC 60.304 63.158 17.94 0.00 36.11 3.51
315 320 1.535687 ACCGGCGCCCCTTATATCT 60.536 57.895 23.46 0.00 0.00 1.98
317 322 0.460311 CCGGCGCCCCTTATATCTAG 59.540 60.000 23.46 1.05 0.00 2.43
318 323 0.179108 CGGCGCCCCTTATATCTAGC 60.179 60.000 23.46 0.00 0.00 3.42
326 331 6.239629 GCGCCCCTTATATCTAGCCTAAATAT 60.240 42.308 0.00 0.00 0.00 1.28
328 333 7.015292 CGCCCCTTATATCTAGCCTAAATATGA 59.985 40.741 0.00 0.00 0.00 2.15
329 334 8.714906 GCCCCTTATATCTAGCCTAAATATGAA 58.285 37.037 0.00 0.00 0.00 2.57
332 337 9.469807 CCTTATATCTAGCCTAAATATGAAGCG 57.530 37.037 0.00 0.00 0.00 4.68
350 356 0.041238 CGGATATGGGAGGCCTAGGA 59.959 60.000 14.75 0.00 0.00 2.94
359 365 3.846430 GGCCTAGGAACGACCGGG 61.846 72.222 14.75 0.00 44.74 5.73
383 389 4.570663 CTCCACGTCGGATCCGGC 62.571 72.222 32.79 30.87 45.19 6.13
403 409 3.650298 TACGCTAGCCCACCCGACT 62.650 63.158 9.66 0.00 0.00 4.18
409 415 4.699522 GCCCACCCGACTCCACAC 62.700 72.222 0.00 0.00 0.00 3.82
415 421 2.432874 CCACCCGACTCCACACATAATA 59.567 50.000 0.00 0.00 0.00 0.98
459 465 2.066999 CCCTAGCCACTCCACTCCC 61.067 68.421 0.00 0.00 0.00 4.30
464 470 2.689034 CCACTCCACTCCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
465 471 2.689034 CACTCCACTCCCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
466 472 2.876858 ACTCCACTCCCCTCCCCT 60.877 66.667 0.00 0.00 0.00 4.79
467 473 2.041405 CTCCACTCCCCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
468 474 3.695825 TCCACTCCCCTCCCCTCC 61.696 72.222 0.00 0.00 0.00 4.30
469 475 4.024984 CCACTCCCCTCCCCTCCA 62.025 72.222 0.00 0.00 0.00 3.86
470 476 2.689034 CACTCCCCTCCCCTCCAC 60.689 72.222 0.00 0.00 0.00 4.02
471 477 2.876858 ACTCCCCTCCCCTCCACT 60.877 66.667 0.00 0.00 0.00 4.00
485 491 0.178932 TCCACTGCCTCCACTACACT 60.179 55.000 0.00 0.00 0.00 3.55
492 498 0.252284 CCTCCACTACACTCCACCCT 60.252 60.000 0.00 0.00 0.00 4.34
493 499 1.006758 CCTCCACTACACTCCACCCTA 59.993 57.143 0.00 0.00 0.00 3.53
507 513 1.069159 CACCCTATCCGACGATCTTCG 60.069 57.143 14.23 14.23 46.93 3.79
518 524 0.317938 CGATCTTCGGCCTACTTCGG 60.318 60.000 0.00 0.00 36.00 4.30
549 555 3.306364 GGCAGCGGATATGAGTTCTACAT 60.306 47.826 0.00 0.00 0.00 2.29
552 558 5.398169 CAGCGGATATGAGTTCTACATCTC 58.602 45.833 0.00 0.00 0.00 2.75
553 559 5.182950 CAGCGGATATGAGTTCTACATCTCT 59.817 44.000 0.00 0.00 0.00 3.10
558 564 8.826710 CGGATATGAGTTCTACATCTCTAGATC 58.173 40.741 0.00 0.00 31.21 2.75
565 571 4.558178 TCTACATCTCTAGATCCGTCGAC 58.442 47.826 5.18 5.18 31.21 4.20
576 582 3.518998 CGTCGACCCCGAGCTCAT 61.519 66.667 15.40 0.00 46.52 2.90
578 584 2.122167 GTCGACCCCGAGCTCATCT 61.122 63.158 15.40 0.00 46.52 2.90
587 593 1.587613 GAGCTCATCTCACGCGGTC 60.588 63.158 12.47 0.00 41.51 4.79
615 621 1.218230 GAGATGATCGTCCGGCTTGC 61.218 60.000 11.42 0.00 0.00 4.01
641 647 2.746277 GCTTCCGGGATGCGTGTT 60.746 61.111 17.80 0.00 0.00 3.32
645 651 0.953471 TTCCGGGATGCGTGTTTGAG 60.953 55.000 0.00 0.00 0.00 3.02
649 655 1.305930 GGGATGCGTGTTTGAGGGTC 61.306 60.000 0.00 0.00 0.00 4.46
657 663 1.068541 GTGTTTGAGGGTCGGATTTGC 60.069 52.381 0.00 0.00 0.00 3.68
669 675 0.255033 GGATTTGCCCTAAGTCCGGT 59.745 55.000 0.00 0.00 35.74 5.28
674 680 1.350071 TGCCCTAAGTCCGGTTGTAA 58.650 50.000 0.00 0.00 0.00 2.41
680 686 3.621715 CCTAAGTCCGGTTGTAAATGCTC 59.378 47.826 0.00 0.00 0.00 4.26
681 687 3.418684 AAGTCCGGTTGTAAATGCTCT 57.581 42.857 0.00 0.00 0.00 4.09
696 702 9.787435 TGTAAATGCTCTAGGTAGAAAAGAAAA 57.213 29.630 0.00 0.00 0.00 2.29
708 714 7.721842 AGGTAGAAAAGAAAAAGGAGAGGAAAG 59.278 37.037 0.00 0.00 0.00 2.62
738 744 4.162651 AGAAAATTGAGAAACCCCAGCAT 58.837 39.130 0.00 0.00 0.00 3.79
749 755 0.897621 CCCCAGCATGAAAAGGAACC 59.102 55.000 0.00 0.00 39.69 3.62
798 804 2.397597 GAGGGAGAGAGAAAGCATCCT 58.602 52.381 0.00 0.00 0.00 3.24
813 819 2.489722 GCATCCTTCCAAAGTCCAGTTC 59.510 50.000 0.00 0.00 0.00 3.01
852 858 3.135530 ACAATGCATCTCTAACCTCCCTC 59.864 47.826 0.00 0.00 0.00 4.30
854 860 1.052617 GCATCTCTAACCTCCCTCCC 58.947 60.000 0.00 0.00 0.00 4.30
855 861 1.723288 CATCTCTAACCTCCCTCCCC 58.277 60.000 0.00 0.00 0.00 4.81
872 878 0.703056 CCCCTCCCCCTCTCTCTCTA 60.703 65.000 0.00 0.00 0.00 2.43
892 898 6.608002 TCTCTATCTCTCTTCTTAACCAACCC 59.392 42.308 0.00 0.00 0.00 4.11
895 901 1.626825 TCTCTTCTTAACCAACCCCCG 59.373 52.381 0.00 0.00 0.00 5.73
896 902 0.694196 TCTTCTTAACCAACCCCCGG 59.306 55.000 0.00 0.00 0.00 5.73
912 919 2.399356 CGGCCCTTTTTCCTCGCTC 61.399 63.158 0.00 0.00 0.00 5.03
1188 1679 1.990060 CACCATCGAGACCACCCCT 60.990 63.158 0.00 0.00 0.00 4.79
1470 1997 3.532155 GCGCCGGAGATCCTGTCT 61.532 66.667 10.31 0.00 40.81 3.41
1986 2549 9.836076 GTTAATTACAGCTTAATTTCGACCTTT 57.164 29.630 14.76 0.00 0.00 3.11
2021 2585 7.642082 AGATCTTTTCCCAATTCTGATCTTG 57.358 36.000 0.00 0.00 36.71 3.02
2026 2590 7.506938 TCTTTTCCCAATTCTGATCTTGTTTCT 59.493 33.333 0.00 0.00 0.00 2.52
2062 2632 5.503634 TTGATTCCCTCTGAACTTCATCA 57.496 39.130 0.00 0.00 35.31 3.07
2091 2679 2.749682 TGGTGCGTCCAAGCTCAT 59.250 55.556 0.00 0.00 44.12 2.90
2092 2680 1.979262 TGGTGCGTCCAAGCTCATA 59.021 52.632 0.00 0.00 44.12 2.15
2129 2745 8.341173 GTCTGAATCTGCTATAATTGTCCAAAG 58.659 37.037 0.00 0.00 0.00 2.77
2227 2853 0.179171 GCATCACACAGCATGACAGC 60.179 55.000 0.00 0.00 39.69 4.40
2261 2903 3.947834 AGTACACAAAATAGCATGGGAGC 59.052 43.478 0.00 0.00 0.00 4.70
2331 2973 3.363178 CGTTTGGCACTTTTCAGTCTTC 58.637 45.455 0.00 0.00 0.00 2.87
2350 2992 2.286523 AACCAGCAGTCCTCGAGGG 61.287 63.158 30.80 16.30 35.41 4.30
2412 3074 4.319046 CCATGTTTTTCAGTGACTGACTCG 60.319 45.833 15.94 0.03 40.46 4.18
2440 3102 2.202878 ATGGTCGAACATCCGGCG 60.203 61.111 10.98 0.00 34.56 6.46
2465 3127 1.202452 GCCCGTACTACACCACCATAC 60.202 57.143 0.00 0.00 0.00 2.39
2466 3128 1.410153 CCCGTACTACACCACCATACC 59.590 57.143 0.00 0.00 0.00 2.73
2467 3129 2.101783 CCGTACTACACCACCATACCA 58.898 52.381 0.00 0.00 0.00 3.25
2468 3130 2.159198 CCGTACTACACCACCATACCAC 60.159 54.545 0.00 0.00 0.00 4.16
2469 3131 2.756760 CGTACTACACCACCATACCACT 59.243 50.000 0.00 0.00 0.00 4.00
2470 3132 3.194116 CGTACTACACCACCATACCACTT 59.806 47.826 0.00 0.00 0.00 3.16
2471 3133 3.695830 ACTACACCACCATACCACTTG 57.304 47.619 0.00 0.00 0.00 3.16
2472 3134 3.244582 ACTACACCACCATACCACTTGA 58.755 45.455 0.00 0.00 0.00 3.02
2473 3135 2.561478 ACACCACCATACCACTTGAC 57.439 50.000 0.00 0.00 0.00 3.18
2474 3136 1.270625 ACACCACCATACCACTTGACG 60.271 52.381 0.00 0.00 0.00 4.35
2475 3137 0.323629 ACCACCATACCACTTGACGG 59.676 55.000 0.00 0.00 0.00 4.79
2476 3138 0.611200 CCACCATACCACTTGACGGA 59.389 55.000 0.00 0.00 0.00 4.69
2477 3139 1.209504 CCACCATACCACTTGACGGAT 59.790 52.381 0.00 0.00 0.00 4.18
2478 3140 2.432874 CCACCATACCACTTGACGGATA 59.567 50.000 0.00 0.00 0.00 2.59
2479 3141 3.492656 CCACCATACCACTTGACGGATAG 60.493 52.174 0.00 0.00 0.00 2.08
2480 3142 2.698797 ACCATACCACTTGACGGATAGG 59.301 50.000 0.00 0.00 0.00 2.57
2481 3143 2.037251 CCATACCACTTGACGGATAGGG 59.963 54.545 0.00 0.00 0.00 3.53
2482 3144 2.832643 TACCACTTGACGGATAGGGA 57.167 50.000 0.00 0.00 0.00 4.20
2483 3145 2.176247 ACCACTTGACGGATAGGGAT 57.824 50.000 0.00 0.00 0.00 3.85
2484 3146 2.040178 ACCACTTGACGGATAGGGATC 58.960 52.381 0.00 0.00 0.00 3.36
2485 3147 2.039418 CCACTTGACGGATAGGGATCA 58.961 52.381 0.00 0.00 33.27 2.92
2486 3148 2.036475 CCACTTGACGGATAGGGATCAG 59.964 54.545 0.00 0.00 33.27 2.90
2487 3149 2.036475 CACTTGACGGATAGGGATCAGG 59.964 54.545 0.00 0.00 33.27 3.86
2488 3150 2.320781 CTTGACGGATAGGGATCAGGT 58.679 52.381 0.00 0.00 33.27 4.00
2489 3151 1.704641 TGACGGATAGGGATCAGGTG 58.295 55.000 0.00 0.00 33.27 4.00
2490 3152 0.318762 GACGGATAGGGATCAGGTGC 59.681 60.000 0.00 0.00 33.27 5.01
2491 3153 0.398522 ACGGATAGGGATCAGGTGCA 60.399 55.000 0.00 0.00 33.27 4.57
2492 3154 0.979665 CGGATAGGGATCAGGTGCAT 59.020 55.000 0.00 0.00 33.27 3.96
2493 3155 1.338484 CGGATAGGGATCAGGTGCATG 60.338 57.143 0.00 0.00 33.27 4.06
2494 3156 1.701847 GGATAGGGATCAGGTGCATGT 59.298 52.381 0.00 0.00 33.27 3.21
2495 3157 2.289945 GGATAGGGATCAGGTGCATGTC 60.290 54.545 0.00 0.00 33.27 3.06
2496 3158 1.878211 TAGGGATCAGGTGCATGTCA 58.122 50.000 0.00 0.00 0.00 3.58
2497 3159 0.254178 AGGGATCAGGTGCATGTCAC 59.746 55.000 10.63 10.63 44.90 3.67
2504 3166 4.041617 GTGCATGTCACCGTGTGA 57.958 55.556 8.54 3.02 40.50 3.58
2511 3173 2.825982 TCACCGTGTGACTTGGGG 59.174 61.111 0.00 0.00 37.67 4.96
2512 3174 2.978010 CACCGTGTGACTTGGGGC 60.978 66.667 0.00 0.00 35.23 5.80
2513 3175 4.265056 ACCGTGTGACTTGGGGCC 62.265 66.667 0.00 0.00 0.00 5.80
2515 3177 4.263572 CGTGTGACTTGGGGCCCA 62.264 66.667 24.76 24.76 0.00 5.36
2516 3178 2.197324 GTGTGACTTGGGGCCCAA 59.803 61.111 34.83 34.83 41.69 4.12
2517 3179 1.456705 GTGTGACTTGGGGCCCAAA 60.457 57.895 36.06 21.15 43.44 3.28
2518 3180 0.831711 GTGTGACTTGGGGCCCAAAT 60.832 55.000 36.06 29.58 43.44 2.32
2519 3181 0.105246 TGTGACTTGGGGCCCAAATT 60.105 50.000 36.06 26.41 43.44 1.82
2520 3182 0.608130 GTGACTTGGGGCCCAAATTC 59.392 55.000 36.06 31.66 43.44 2.17
2521 3183 0.189574 TGACTTGGGGCCCAAATTCA 59.810 50.000 36.06 33.53 43.44 2.57
2522 3184 1.347062 GACTTGGGGCCCAAATTCAA 58.653 50.000 36.06 16.99 43.44 2.69
2523 3185 1.696884 GACTTGGGGCCCAAATTCAAA 59.303 47.619 36.06 15.00 43.44 2.69
2524 3186 2.305635 GACTTGGGGCCCAAATTCAAAT 59.694 45.455 36.06 16.70 43.44 2.32
2525 3187 2.715880 ACTTGGGGCCCAAATTCAAATT 59.284 40.909 36.06 7.34 43.44 1.82
2526 3188 3.139957 ACTTGGGGCCCAAATTCAAATTT 59.860 39.130 36.06 11.03 43.44 1.82
2527 3189 4.352298 ACTTGGGGCCCAAATTCAAATTTA 59.648 37.500 36.06 12.12 43.44 1.40
2528 3190 5.163045 ACTTGGGGCCCAAATTCAAATTTAA 60.163 36.000 36.06 11.91 43.44 1.52
2529 3191 5.324832 TGGGGCCCAAATTCAAATTTAAA 57.675 34.783 26.55 0.00 36.52 1.52
2530 3192 5.073428 TGGGGCCCAAATTCAAATTTAAAC 58.927 37.500 26.55 0.00 36.52 2.01
2531 3193 5.073428 GGGGCCCAAATTCAAATTTAAACA 58.927 37.500 26.86 0.00 36.52 2.83
2532 3194 5.714333 GGGGCCCAAATTCAAATTTAAACAT 59.286 36.000 26.86 0.00 36.52 2.71
2533 3195 6.210385 GGGGCCCAAATTCAAATTTAAACATT 59.790 34.615 26.86 0.00 36.52 2.71
2534 3196 7.089538 GGGCCCAAATTCAAATTTAAACATTG 58.910 34.615 19.95 8.56 36.52 2.82
2535 3197 6.585702 GGCCCAAATTCAAATTTAAACATTGC 59.414 34.615 9.60 0.00 36.52 3.56
2536 3198 6.305160 GCCCAAATTCAAATTTAAACATTGCG 59.695 34.615 9.60 0.00 36.52 4.85
2537 3199 7.579726 CCCAAATTCAAATTTAAACATTGCGA 58.420 30.769 9.60 3.66 36.52 5.10
2538 3200 8.072567 CCCAAATTCAAATTTAAACATTGCGAA 58.927 29.630 9.60 2.95 36.52 4.70
2539 3201 9.443283 CCAAATTCAAATTTAAACATTGCGAAA 57.557 25.926 9.60 0.00 36.52 3.46
2545 3207 9.474920 TCAAATTTAAACATTGCGAAAGAATCT 57.525 25.926 9.60 0.00 0.00 2.40
2546 3208 9.519905 CAAATTTAAACATTGCGAAAGAATCTG 57.480 29.630 0.00 0.00 0.00 2.90
2547 3209 9.474920 AAATTTAAACATTGCGAAAGAATCTGA 57.525 25.926 0.00 0.00 0.00 3.27
2548 3210 9.474920 AATTTAAACATTGCGAAAGAATCTGAA 57.525 25.926 0.00 0.00 0.00 3.02
2549 3211 8.864069 TTTAAACATTGCGAAAGAATCTGAAA 57.136 26.923 0.00 0.00 0.00 2.69
2550 3212 8.864069 TTAAACATTGCGAAAGAATCTGAAAA 57.136 26.923 0.00 0.00 0.00 2.29
2551 3213 7.769272 AAACATTGCGAAAGAATCTGAAAAA 57.231 28.000 0.00 0.00 0.00 1.94
2571 3233 4.325028 AAAATCATGCTTGTTCACAGCA 57.675 36.364 0.00 0.00 43.04 4.41
2572 3234 3.293311 AATCATGCTTGTTCACAGCAC 57.707 42.857 0.00 0.00 41.61 4.40
2573 3235 1.677942 TCATGCTTGTTCACAGCACA 58.322 45.000 0.00 0.00 41.61 4.57
2574 3236 2.232399 TCATGCTTGTTCACAGCACAT 58.768 42.857 0.00 0.00 41.61 3.21
2575 3237 3.410508 TCATGCTTGTTCACAGCACATA 58.589 40.909 0.00 0.00 41.61 2.29
2576 3238 4.011698 TCATGCTTGTTCACAGCACATAT 58.988 39.130 0.00 0.00 41.61 1.78
2577 3239 4.460034 TCATGCTTGTTCACAGCACATATT 59.540 37.500 0.00 0.00 41.61 1.28
2578 3240 5.647225 TCATGCTTGTTCACAGCACATATTA 59.353 36.000 0.00 0.00 41.61 0.98
2579 3241 5.956068 TGCTTGTTCACAGCACATATTAA 57.044 34.783 0.00 0.00 33.24 1.40
2580 3242 5.941733 TGCTTGTTCACAGCACATATTAAG 58.058 37.500 0.00 0.00 33.24 1.85
2581 3243 5.704978 TGCTTGTTCACAGCACATATTAAGA 59.295 36.000 0.00 0.00 33.24 2.10
2582 3244 6.375174 TGCTTGTTCACAGCACATATTAAGAT 59.625 34.615 0.00 0.00 33.24 2.40
2583 3245 7.552330 TGCTTGTTCACAGCACATATTAAGATA 59.448 33.333 0.00 0.00 33.24 1.98
2584 3246 8.397906 GCTTGTTCACAGCACATATTAAGATAA 58.602 33.333 0.00 0.00 0.00 1.75
2587 3249 9.836864 TGTTCACAGCACATATTAAGATAATCT 57.163 29.630 0.00 0.00 0.00 2.40
2658 3320 7.551035 AGAGAAATCTGTCATGAATAGTTGC 57.449 36.000 0.00 0.00 0.00 4.17
2659 3321 6.257411 AGAGAAATCTGTCATGAATAGTTGCG 59.743 38.462 0.00 0.00 0.00 4.85
2660 3322 6.108687 AGAAATCTGTCATGAATAGTTGCGA 58.891 36.000 0.00 0.00 0.00 5.10
2661 3323 6.595326 AGAAATCTGTCATGAATAGTTGCGAA 59.405 34.615 0.00 0.00 0.00 4.70
2662 3324 6.932356 AATCTGTCATGAATAGTTGCGAAT 57.068 33.333 0.00 0.00 0.00 3.34
2663 3325 5.723492 TCTGTCATGAATAGTTGCGAATG 57.277 39.130 0.00 0.00 0.00 2.67
2664 3326 4.571984 TCTGTCATGAATAGTTGCGAATGG 59.428 41.667 0.00 0.00 0.00 3.16
2665 3327 4.260985 TGTCATGAATAGTTGCGAATGGT 58.739 39.130 0.00 0.00 0.00 3.55
2666 3328 4.699735 TGTCATGAATAGTTGCGAATGGTT 59.300 37.500 0.00 0.00 0.00 3.67
2667 3329 5.163764 TGTCATGAATAGTTGCGAATGGTTC 60.164 40.000 0.00 0.00 0.00 3.62
2668 3330 5.065218 GTCATGAATAGTTGCGAATGGTTCT 59.935 40.000 0.00 0.00 0.00 3.01
2669 3331 5.294306 TCATGAATAGTTGCGAATGGTTCTC 59.706 40.000 0.00 0.00 0.00 2.87
2670 3332 4.832248 TGAATAGTTGCGAATGGTTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
2671 3333 4.631377 TGAATAGTTGCGAATGGTTCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
2672 3334 2.550830 AGTTGCGAATGGTTCTCTGT 57.449 45.000 0.00 0.00 0.00 3.41
2673 3335 3.678056 AGTTGCGAATGGTTCTCTGTA 57.322 42.857 0.00 0.00 0.00 2.74
2674 3336 4.207891 AGTTGCGAATGGTTCTCTGTAT 57.792 40.909 0.00 0.00 0.00 2.29
2675 3337 5.339008 AGTTGCGAATGGTTCTCTGTATA 57.661 39.130 0.00 0.00 0.00 1.47
2676 3338 5.109903 AGTTGCGAATGGTTCTCTGTATAC 58.890 41.667 0.00 0.00 0.00 1.47
2677 3339 5.105310 AGTTGCGAATGGTTCTCTGTATACT 60.105 40.000 4.17 0.00 0.00 2.12
2678 3340 6.096423 AGTTGCGAATGGTTCTCTGTATACTA 59.904 38.462 4.17 0.00 0.00 1.82
2679 3341 6.650427 TGCGAATGGTTCTCTGTATACTAT 57.350 37.500 4.17 0.00 0.00 2.12
2680 3342 7.050970 TGCGAATGGTTCTCTGTATACTATT 57.949 36.000 4.17 0.00 0.00 1.73
2681 3343 7.145985 TGCGAATGGTTCTCTGTATACTATTC 58.854 38.462 4.17 0.00 36.80 1.75
2682 3344 7.145985 GCGAATGGTTCTCTGTATACTATTCA 58.854 38.462 4.17 0.00 38.75 2.57
2683 3345 7.115095 GCGAATGGTTCTCTGTATACTATTCAC 59.885 40.741 4.17 0.00 38.75 3.18
2684 3346 8.135529 CGAATGGTTCTCTGTATACTATTCACA 58.864 37.037 4.17 0.00 38.75 3.58
2685 3347 9.988815 GAATGGTTCTCTGTATACTATTCACAT 57.011 33.333 4.17 0.00 38.71 3.21
2686 3348 9.988815 AATGGTTCTCTGTATACTATTCACATC 57.011 33.333 4.17 0.00 0.00 3.06
2687 3349 8.768501 TGGTTCTCTGTATACTATTCACATCT 57.231 34.615 4.17 0.00 0.00 2.90
2688 3350 8.633561 TGGTTCTCTGTATACTATTCACATCTG 58.366 37.037 4.17 0.00 0.00 2.90
2689 3351 8.851145 GGTTCTCTGTATACTATTCACATCTGA 58.149 37.037 4.17 0.00 0.00 3.27
2690 3352 9.891828 GTTCTCTGTATACTATTCACATCTGAG 57.108 37.037 4.17 0.00 0.00 3.35
2691 3353 9.634021 TTCTCTGTATACTATTCACATCTGAGT 57.366 33.333 4.17 0.00 0.00 3.41
2692 3354 9.634021 TCTCTGTATACTATTCACATCTGAGTT 57.366 33.333 4.17 0.00 0.00 3.01
2701 3363 9.566432 ACTATTCACATCTGAGTTTCTCTTTTT 57.434 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.225091 ACAATCTCTTGGTGGCAATCCA 60.225 45.455 0.00 0.00 37.02 3.41
2 3 2.450476 ACAATCTCTTGGTGGCAATCC 58.550 47.619 0.00 0.00 36.64 3.01
4 5 3.947910 CAACAATCTCTTGGTGGCAAT 57.052 42.857 0.00 0.00 44.75 3.56
11 12 3.383761 GCACAAACCAACAATCTCTTGG 58.616 45.455 0.00 0.00 43.49 3.61
12 13 3.068590 AGGCACAAACCAACAATCTCTTG 59.931 43.478 0.00 0.00 38.39 3.02
13 14 3.299503 AGGCACAAACCAACAATCTCTT 58.700 40.909 0.00 0.00 0.00 2.85
14 15 2.949447 AGGCACAAACCAACAATCTCT 58.051 42.857 0.00 0.00 0.00 3.10
15 16 3.383761 CAAGGCACAAACCAACAATCTC 58.616 45.455 0.00 0.00 0.00 2.75
16 17 2.102925 CCAAGGCACAAACCAACAATCT 59.897 45.455 0.00 0.00 0.00 2.40
17 18 2.482864 CCAAGGCACAAACCAACAATC 58.517 47.619 0.00 0.00 0.00 2.67
18 19 1.474855 GCCAAGGCACAAACCAACAAT 60.475 47.619 6.14 0.00 41.49 2.71
19 20 0.107945 GCCAAGGCACAAACCAACAA 60.108 50.000 6.14 0.00 41.49 2.83
20 21 0.975040 AGCCAAGGCACAAACCAACA 60.975 50.000 14.40 0.00 44.88 3.33
21 22 0.177836 AAGCCAAGGCACAAACCAAC 59.822 50.000 14.40 0.00 44.88 3.77
22 23 1.781786 TAAGCCAAGGCACAAACCAA 58.218 45.000 14.40 0.00 44.88 3.67
23 24 1.781786 TTAAGCCAAGGCACAAACCA 58.218 45.000 14.40 0.00 44.88 3.67
24 25 4.529109 TTATTAAGCCAAGGCACAAACC 57.471 40.909 14.40 0.00 44.88 3.27
25 26 5.538118 ACTTTATTAAGCCAAGGCACAAAC 58.462 37.500 14.40 0.00 44.88 2.93
26 27 5.799827 ACTTTATTAAGCCAAGGCACAAA 57.200 34.783 14.40 4.65 44.88 2.83
27 28 5.510520 CCAACTTTATTAAGCCAAGGCACAA 60.511 40.000 14.40 6.84 44.88 3.33
28 29 4.021544 CCAACTTTATTAAGCCAAGGCACA 60.022 41.667 14.40 0.00 44.88 4.57
29 30 4.494484 CCAACTTTATTAAGCCAAGGCAC 58.506 43.478 14.40 0.00 44.88 5.01
30 31 3.513515 CCCAACTTTATTAAGCCAAGGCA 59.486 43.478 14.40 0.00 44.88 4.75
31 32 3.118775 CCCCAACTTTATTAAGCCAAGGC 60.119 47.826 2.02 2.02 42.33 4.35
32 33 3.118775 GCCCCAACTTTATTAAGCCAAGG 60.119 47.826 0.00 0.00 34.60 3.61
33 34 3.513515 TGCCCCAACTTTATTAAGCCAAG 59.486 43.478 0.00 0.00 34.60 3.61
34 35 3.511477 TGCCCCAACTTTATTAAGCCAA 58.489 40.909 0.00 0.00 34.60 4.52
35 36 3.096092 CTGCCCCAACTTTATTAAGCCA 58.904 45.455 0.00 0.00 34.60 4.75
36 37 2.430694 CCTGCCCCAACTTTATTAAGCC 59.569 50.000 0.00 0.00 34.60 4.35
37 38 2.430694 CCCTGCCCCAACTTTATTAAGC 59.569 50.000 0.00 0.00 34.60 3.09
38 39 3.976015 TCCCTGCCCCAACTTTATTAAG 58.024 45.455 0.00 0.00 37.40 1.85
39 40 4.090819 GTTCCCTGCCCCAACTTTATTAA 58.909 43.478 0.00 0.00 0.00 1.40
40 41 3.564790 GGTTCCCTGCCCCAACTTTATTA 60.565 47.826 0.00 0.00 0.00 0.98
41 42 2.536066 GTTCCCTGCCCCAACTTTATT 58.464 47.619 0.00 0.00 0.00 1.40
42 43 1.273041 GGTTCCCTGCCCCAACTTTAT 60.273 52.381 0.00 0.00 0.00 1.40
43 44 0.113580 GGTTCCCTGCCCCAACTTTA 59.886 55.000 0.00 0.00 0.00 1.85
44 45 1.152333 GGTTCCCTGCCCCAACTTT 60.152 57.895 0.00 0.00 0.00 2.66
45 46 2.526110 GGTTCCCTGCCCCAACTT 59.474 61.111 0.00 0.00 0.00 2.66
46 47 3.590574 GGGTTCCCTGCCCCAACT 61.591 66.667 0.00 0.00 40.88 3.16
56 57 4.020573 CCTTTTTGAAACATAGGGGTTCCC 60.021 45.833 0.00 0.00 45.90 3.97
57 58 4.591498 ACCTTTTTGAAACATAGGGGTTCC 59.409 41.667 0.00 0.00 0.00 3.62
58 59 5.801531 ACCTTTTTGAAACATAGGGGTTC 57.198 39.130 0.00 0.00 0.00 3.62
59 60 7.865530 AATACCTTTTTGAAACATAGGGGTT 57.134 32.000 0.00 0.00 0.00 4.11
60 61 7.038587 GGAAATACCTTTTTGAAACATAGGGGT 60.039 37.037 0.00 0.00 35.41 4.95
61 62 7.327975 GGAAATACCTTTTTGAAACATAGGGG 58.672 38.462 0.00 0.00 35.41 4.79
62 63 7.038658 TGGGAAATACCTTTTTGAAACATAGGG 60.039 37.037 0.00 0.00 38.98 3.53
63 64 7.902087 TGGGAAATACCTTTTTGAAACATAGG 58.098 34.615 0.00 0.00 38.98 2.57
64 65 9.771534 TTTGGGAAATACCTTTTTGAAACATAG 57.228 29.630 0.00 0.00 38.98 2.23
66 67 9.467796 TTTTTGGGAAATACCTTTTTGAAACAT 57.532 25.926 0.00 0.00 38.98 2.71
67 68 8.863872 TTTTTGGGAAATACCTTTTTGAAACA 57.136 26.923 0.00 0.00 38.98 2.83
115 119 9.574516 AGACACAACCTCTATTGTTTATTCTTT 57.425 29.630 0.00 0.00 40.89 2.52
128 132 4.344978 AGCTCACATAGACACAACCTCTA 58.655 43.478 0.00 0.00 0.00 2.43
143 147 3.459148 TTGCTGGTGCGAGCTCACA 62.459 57.895 15.40 7.57 43.34 3.58
159 163 1.574428 GGTGTTGGCTAGCGTGTTG 59.426 57.895 9.00 0.00 0.00 3.33
161 165 2.357034 CGGTGTTGGCTAGCGTGT 60.357 61.111 9.00 0.00 34.64 4.49
165 169 4.752879 TCGGCGGTGTTGGCTAGC 62.753 66.667 6.04 6.04 0.00 3.42
168 172 2.781595 CTTACTCGGCGGTGTTGGCT 62.782 60.000 7.21 0.00 0.00 4.75
169 173 2.357760 TTACTCGGCGGTGTTGGC 60.358 61.111 7.21 0.00 0.00 4.52
205 209 1.568118 CGTATGGAGGGGGTTTGGGT 61.568 60.000 0.00 0.00 0.00 4.51
226 231 1.754380 TTACCAGATCATCCGCCCGG 61.754 60.000 0.00 0.00 0.00 5.73
270 275 1.002624 GGGTTTGAGACGCCCATCA 60.003 57.895 0.00 0.00 41.93 3.07
279 284 1.463214 TCAGCCTGGGGGTTTGAGA 60.463 57.895 0.00 0.00 34.45 3.27
298 303 0.460311 CTAGATATAAGGGGCGCCGG 59.540 60.000 22.54 0.00 0.00 6.13
306 311 9.469807 CGCTTCATATTTAGGCTAGATATAAGG 57.530 37.037 15.04 5.40 0.00 2.69
309 314 8.762481 TCCGCTTCATATTTAGGCTAGATATA 57.238 34.615 15.04 6.44 0.00 0.86
315 320 6.408092 CCCATATCCGCTTCATATTTAGGCTA 60.408 42.308 0.00 0.00 0.00 3.93
317 322 4.576463 CCCATATCCGCTTCATATTTAGGC 59.424 45.833 0.00 0.00 0.00 3.93
318 323 5.989477 TCCCATATCCGCTTCATATTTAGG 58.011 41.667 0.00 0.00 0.00 2.69
326 331 1.754745 GCCTCCCATATCCGCTTCA 59.245 57.895 0.00 0.00 0.00 3.02
328 333 0.178903 TAGGCCTCCCATATCCGCTT 60.179 55.000 9.68 0.00 0.00 4.68
329 334 0.616111 CTAGGCCTCCCATATCCGCT 60.616 60.000 9.68 0.00 0.00 5.52
332 337 1.909986 GTTCCTAGGCCTCCCATATCC 59.090 57.143 9.68 0.00 0.00 2.59
383 389 3.912907 CGGGTGGGCTAGCGTAGG 61.913 72.222 9.00 0.00 0.00 3.18
385 391 3.142838 GTCGGGTGGGCTAGCGTA 61.143 66.667 9.00 0.00 0.00 4.42
403 409 4.280929 CGGATGGAGACTATTATGTGTGGA 59.719 45.833 0.00 0.00 0.00 4.02
409 415 3.118956 GGGAGCGGATGGAGACTATTATG 60.119 52.174 0.00 0.00 0.00 1.90
415 421 1.760086 CAGGGAGCGGATGGAGACT 60.760 63.158 0.00 0.00 0.00 3.24
459 465 3.086600 GAGGCAGTGGAGGGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
464 470 0.904865 TGTAGTGGAGGCAGTGGAGG 60.905 60.000 0.00 0.00 0.00 4.30
465 471 0.247736 GTGTAGTGGAGGCAGTGGAG 59.752 60.000 0.00 0.00 0.00 3.86
466 472 0.178932 AGTGTAGTGGAGGCAGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
467 473 0.247736 GAGTGTAGTGGAGGCAGTGG 59.752 60.000 0.00 0.00 0.00 4.00
468 474 0.247736 GGAGTGTAGTGGAGGCAGTG 59.752 60.000 0.00 0.00 0.00 3.66
469 475 0.178932 TGGAGTGTAGTGGAGGCAGT 60.179 55.000 0.00 0.00 0.00 4.40
470 476 0.247736 GTGGAGTGTAGTGGAGGCAG 59.752 60.000 0.00 0.00 0.00 4.85
471 477 1.192146 GGTGGAGTGTAGTGGAGGCA 61.192 60.000 0.00 0.00 0.00 4.75
485 491 0.477204 AGATCGTCGGATAGGGTGGA 59.523 55.000 0.00 0.00 31.51 4.02
522 528 4.624364 CATATCCGCTGCCCGCCA 62.624 66.667 0.00 0.00 35.03 5.69
525 531 0.946221 GAACTCATATCCGCTGCCCG 60.946 60.000 0.00 0.00 0.00 6.13
526 532 0.394565 AGAACTCATATCCGCTGCCC 59.605 55.000 0.00 0.00 0.00 5.36
527 533 2.035961 TGTAGAACTCATATCCGCTGCC 59.964 50.000 0.00 0.00 0.00 4.85
528 534 3.371102 TGTAGAACTCATATCCGCTGC 57.629 47.619 0.00 0.00 0.00 5.25
529 535 5.182950 AGAGATGTAGAACTCATATCCGCTG 59.817 44.000 0.00 0.00 35.09 5.18
530 536 5.321102 AGAGATGTAGAACTCATATCCGCT 58.679 41.667 0.00 0.00 35.09 5.52
532 538 8.731275 ATCTAGAGATGTAGAACTCATATCCG 57.269 38.462 0.00 0.00 35.09 4.18
533 539 9.120538 GGATCTAGAGATGTAGAACTCATATCC 57.879 40.741 0.00 5.21 35.09 2.59
534 540 8.826710 CGGATCTAGAGATGTAGAACTCATATC 58.173 40.741 0.00 0.46 34.37 1.63
535 541 8.325787 ACGGATCTAGAGATGTAGAACTCATAT 58.674 37.037 0.00 0.00 34.37 1.78
536 542 7.681679 ACGGATCTAGAGATGTAGAACTCATA 58.318 38.462 0.00 0.00 34.37 2.15
537 543 6.539173 ACGGATCTAGAGATGTAGAACTCAT 58.461 40.000 0.00 0.00 34.37 2.90
538 544 5.931294 ACGGATCTAGAGATGTAGAACTCA 58.069 41.667 0.00 0.00 34.37 3.41
549 555 0.108207 GGGGTCGACGGATCTAGAGA 59.892 60.000 9.92 0.00 0.00 3.10
552 558 1.227764 TCGGGGTCGACGGATCTAG 60.228 63.158 9.92 0.00 40.88 2.43
553 559 1.227764 CTCGGGGTCGACGGATCTA 60.228 63.158 9.92 0.00 40.88 1.98
578 584 3.062466 CTCCTCAGGACCGCGTGA 61.062 66.667 4.92 0.33 37.37 4.35
587 593 1.885887 GACGATCATCTCCTCCTCAGG 59.114 57.143 0.00 0.00 42.01 3.86
623 629 3.545124 AACACGCATCCCGGAAGCA 62.545 57.895 14.73 0.00 42.52 3.91
629 635 2.398554 CCCTCAAACACGCATCCCG 61.399 63.158 0.00 0.00 44.21 5.14
641 647 1.001393 GGGCAAATCCGACCCTCAA 60.001 57.895 0.00 0.00 40.75 3.02
645 651 0.255033 ACTTAGGGCAAATCCGACCC 59.745 55.000 0.00 0.00 44.62 4.46
649 655 2.690326 CGGACTTAGGGCAAATCCG 58.310 57.895 0.00 0.00 45.61 4.18
657 663 2.681344 GCATTTACAACCGGACTTAGGG 59.319 50.000 9.46 0.00 0.00 3.53
669 675 9.787435 TTTCTTTTCTACCTAGAGCATTTACAA 57.213 29.630 0.00 0.00 33.21 2.41
674 680 8.164070 TCCTTTTTCTTTTCTACCTAGAGCATT 58.836 33.333 0.00 0.00 33.21 3.56
680 686 7.908453 TCCTCTCCTTTTTCTTTTCTACCTAG 58.092 38.462 0.00 0.00 0.00 3.02
681 687 7.867160 TCCTCTCCTTTTTCTTTTCTACCTA 57.133 36.000 0.00 0.00 0.00 3.08
696 702 3.009695 TCTCTCGTCTCTTTCCTCTCCTT 59.990 47.826 0.00 0.00 0.00 3.36
708 714 5.120986 GGGTTTCTCAATTTTCTCTCGTCTC 59.879 44.000 0.00 0.00 0.00 3.36
738 744 4.023291 ACTTCAGCTTTGGTTCCTTTTCA 58.977 39.130 0.00 0.00 0.00 2.69
749 755 2.096909 CACGTCCGTTACTTCAGCTTTG 60.097 50.000 0.00 0.00 0.00 2.77
780 786 2.158827 GGAAGGATGCTTTCTCTCTCCC 60.159 54.545 0.00 0.00 0.00 4.30
781 787 2.503356 TGGAAGGATGCTTTCTCTCTCC 59.497 50.000 6.82 0.00 0.00 3.71
782 788 3.902881 TGGAAGGATGCTTTCTCTCTC 57.097 47.619 6.82 0.00 0.00 3.20
798 804 3.644966 ACTGTGAACTGGACTTTGGAA 57.355 42.857 0.00 0.00 0.00 3.53
813 819 3.567576 TTGTTGTTGGTGTGAACTGTG 57.432 42.857 0.00 0.00 0.00 3.66
852 858 3.039526 AGAGAGAGGGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
854 860 1.357761 GATAGAGAGAGAGGGGGAGGG 59.642 61.905 0.00 0.00 0.00 4.30
855 861 2.308866 GAGATAGAGAGAGAGGGGGAGG 59.691 59.091 0.00 0.00 0.00 4.30
862 868 8.210946 TGGTTAAGAAGAGAGATAGAGAGAGAG 58.789 40.741 0.00 0.00 0.00 3.20
863 869 8.096621 TGGTTAAGAAGAGAGATAGAGAGAGA 57.903 38.462 0.00 0.00 0.00 3.10
865 871 7.558444 GGTTGGTTAAGAAGAGAGATAGAGAGA 59.442 40.741 0.00 0.00 0.00 3.10
872 878 3.523972 GGGGGTTGGTTAAGAAGAGAGAT 59.476 47.826 0.00 0.00 0.00 2.75
892 898 2.750237 CGAGGAAAAAGGGCCGGG 60.750 66.667 2.18 0.00 0.00 5.73
895 901 2.046864 GGAGCGAGGAAAAAGGGCC 61.047 63.158 0.00 0.00 0.00 5.80
896 902 0.893727 TTGGAGCGAGGAAAAAGGGC 60.894 55.000 0.00 0.00 0.00 5.19
912 919 1.601248 AGGGGGAGAAGAGGATTTGG 58.399 55.000 0.00 0.00 0.00 3.28
1164 1655 3.458163 GTCTCGATGGTGCGGGGA 61.458 66.667 0.00 0.00 31.30 4.81
1188 1679 1.452801 GACGAAGGTGGTGGGGAAA 59.547 57.895 0.00 0.00 0.00 3.13
1470 1997 2.282958 AAGTCCAGGACGCTCGGA 60.283 61.111 14.32 0.00 37.67 4.55
1789 2334 2.016704 GGCGATGATACAGCGACGG 61.017 63.158 13.25 0.00 42.51 4.79
1960 2523 9.836076 AAAGGTCGAAATTAAGCTGTAATTAAC 57.164 29.630 11.69 10.55 0.00 2.01
1986 2549 6.620877 TGGGAAAAGATCTACTAGCAAAGA 57.379 37.500 0.00 0.00 0.00 2.52
2021 2585 4.681744 TCAATCCAAACAGCAACAGAAAC 58.318 39.130 0.00 0.00 0.00 2.78
2081 2669 7.879677 CAGACCATATGTATTTATGAGCTTGGA 59.120 37.037 1.24 0.00 32.36 3.53
2085 2673 9.664332 GATTCAGACCATATGTATTTATGAGCT 57.336 33.333 1.24 0.00 32.36 4.09
2088 2676 9.440773 GCAGATTCAGACCATATGTATTTATGA 57.559 33.333 1.24 0.00 32.36 2.15
2089 2677 9.445878 AGCAGATTCAGACCATATGTATTTATG 57.554 33.333 1.24 0.00 0.00 1.90
2129 2745 2.639286 CAGCAGCAAACACCGGAC 59.361 61.111 9.46 0.00 0.00 4.79
2150 2770 5.878116 TGTTTCCAAATATACTTCACTCGGG 59.122 40.000 0.00 0.00 0.00 5.14
2331 2973 1.079543 CCTCGAGGACTGCTGGTTG 60.080 63.158 28.21 0.00 37.39 3.77
2350 2992 0.832135 TACCTCCGGGGCAGATGATC 60.832 60.000 0.00 0.00 39.10 2.92
2370 3032 1.562575 GGGCGTGGTTCGTGTTGTAG 61.563 60.000 0.00 0.00 42.13 2.74
2412 3074 2.232941 TGTTCGACCATCAAGGACTACC 59.767 50.000 0.00 0.00 41.22 3.18
2440 3102 1.039233 TGGTGTAGTACGGGCTAGCC 61.039 60.000 26.55 26.55 0.00 3.93
2454 3116 1.270625 CGTCAAGTGGTATGGTGGTGT 60.271 52.381 0.00 0.00 0.00 4.16
2465 3127 2.036475 CTGATCCCTATCCGTCAAGTGG 59.964 54.545 0.00 0.00 0.00 4.00
2466 3128 2.036475 CCTGATCCCTATCCGTCAAGTG 59.964 54.545 0.00 0.00 0.00 3.16
2467 3129 2.320781 CCTGATCCCTATCCGTCAAGT 58.679 52.381 0.00 0.00 0.00 3.16
2468 3130 2.036475 CACCTGATCCCTATCCGTCAAG 59.964 54.545 0.00 0.00 0.00 3.02
2469 3131 2.039418 CACCTGATCCCTATCCGTCAA 58.961 52.381 0.00 0.00 0.00 3.18
2470 3132 1.704641 CACCTGATCCCTATCCGTCA 58.295 55.000 0.00 0.00 0.00 4.35
2471 3133 0.318762 GCACCTGATCCCTATCCGTC 59.681 60.000 0.00 0.00 0.00 4.79
2472 3134 0.398522 TGCACCTGATCCCTATCCGT 60.399 55.000 0.00 0.00 0.00 4.69
2473 3135 0.979665 ATGCACCTGATCCCTATCCG 59.020 55.000 0.00 0.00 0.00 4.18
2474 3136 1.701847 ACATGCACCTGATCCCTATCC 59.298 52.381 0.00 0.00 0.00 2.59
2475 3137 2.369860 TGACATGCACCTGATCCCTATC 59.630 50.000 0.00 0.00 0.00 2.08
2476 3138 2.105477 GTGACATGCACCTGATCCCTAT 59.895 50.000 8.54 0.00 41.78 2.57
2477 3139 1.486310 GTGACATGCACCTGATCCCTA 59.514 52.381 8.54 0.00 41.78 3.53
2478 3140 0.254178 GTGACATGCACCTGATCCCT 59.746 55.000 8.54 0.00 41.78 4.20
2479 3141 2.785868 GTGACATGCACCTGATCCC 58.214 57.895 8.54 0.00 41.78 3.85
2487 3149 4.041617 TCACACGGTGACATGCAC 57.958 55.556 16.29 10.63 46.98 4.57
2494 3156 2.825982 CCCCAAGTCACACGGTGA 59.174 61.111 16.29 0.00 40.50 4.02
2495 3157 2.978010 GCCCCAAGTCACACGGTG 60.978 66.667 6.58 6.58 34.45 4.94
2496 3158 4.265056 GGCCCCAAGTCACACGGT 62.265 66.667 0.00 0.00 0.00 4.83
2498 3160 3.783362 TTGGGCCCCAAGTCACACG 62.783 63.158 22.27 0.00 38.75 4.49
2499 3161 0.831711 ATTTGGGCCCCAAGTCACAC 60.832 55.000 22.27 0.00 44.84 3.82
2500 3162 0.105246 AATTTGGGCCCCAAGTCACA 60.105 50.000 22.27 0.00 44.84 3.58
2501 3163 0.608130 GAATTTGGGCCCCAAGTCAC 59.392 55.000 26.39 7.30 44.84 3.67
2502 3164 0.189574 TGAATTTGGGCCCCAAGTCA 59.810 50.000 29.19 29.19 44.84 3.41
2503 3165 1.347062 TTGAATTTGGGCCCCAAGTC 58.653 50.000 25.06 25.06 44.84 3.01
2504 3166 1.813102 TTTGAATTTGGGCCCCAAGT 58.187 45.000 22.27 15.18 44.84 3.16
2505 3167 3.438216 AATTTGAATTTGGGCCCCAAG 57.562 42.857 22.27 0.00 44.84 3.61
2506 3168 3.891805 AAATTTGAATTTGGGCCCCAA 57.108 38.095 22.27 16.64 42.29 4.12
2507 3169 5.073428 GTTTAAATTTGAATTTGGGCCCCA 58.927 37.500 22.27 4.90 38.90 4.96
2508 3170 5.073428 TGTTTAAATTTGAATTTGGGCCCC 58.927 37.500 22.27 3.07 38.90 5.80
2509 3171 6.832520 ATGTTTAAATTTGAATTTGGGCCC 57.167 33.333 17.59 17.59 38.90 5.80
2510 3172 6.585702 GCAATGTTTAAATTTGAATTTGGGCC 59.414 34.615 14.55 0.00 38.90 5.80
2511 3173 6.305160 CGCAATGTTTAAATTTGAATTTGGGC 59.695 34.615 17.02 10.04 38.90 5.36
2512 3174 7.579726 TCGCAATGTTTAAATTTGAATTTGGG 58.420 30.769 19.99 19.99 38.90 4.12
2513 3175 9.443283 TTTCGCAATGTTTAAATTTGAATTTGG 57.557 25.926 14.55 10.35 38.90 3.28
2519 3181 9.474920 AGATTCTTTCGCAATGTTTAAATTTGA 57.525 25.926 14.55 0.00 0.00 2.69
2520 3182 9.519905 CAGATTCTTTCGCAATGTTTAAATTTG 57.480 29.630 0.00 8.65 0.00 2.32
2521 3183 9.474920 TCAGATTCTTTCGCAATGTTTAAATTT 57.525 25.926 0.00 0.00 0.00 1.82
2522 3184 9.474920 TTCAGATTCTTTCGCAATGTTTAAATT 57.525 25.926 0.00 0.00 0.00 1.82
2523 3185 9.474920 TTTCAGATTCTTTCGCAATGTTTAAAT 57.525 25.926 0.00 0.00 0.00 1.40
2524 3186 8.864069 TTTCAGATTCTTTCGCAATGTTTAAA 57.136 26.923 0.00 0.00 0.00 1.52
2525 3187 8.864069 TTTTCAGATTCTTTCGCAATGTTTAA 57.136 26.923 0.00 0.00 0.00 1.52
2526 3188 8.864069 TTTTTCAGATTCTTTCGCAATGTTTA 57.136 26.923 0.00 0.00 0.00 2.01
2527 3189 7.769272 TTTTTCAGATTCTTTCGCAATGTTT 57.231 28.000 0.00 0.00 0.00 2.83
2549 3211 4.508861 GTGCTGTGAACAAGCATGATTTTT 59.491 37.500 0.00 0.00 40.84 1.94
2550 3212 4.053295 GTGCTGTGAACAAGCATGATTTT 58.947 39.130 0.00 0.00 40.84 1.82
2551 3213 3.068448 TGTGCTGTGAACAAGCATGATTT 59.932 39.130 0.00 0.00 40.84 2.17
2552 3214 2.624364 TGTGCTGTGAACAAGCATGATT 59.376 40.909 0.00 0.00 40.84 2.57
2553 3215 2.232399 TGTGCTGTGAACAAGCATGAT 58.768 42.857 0.00 0.00 40.84 2.45
2554 3216 1.677942 TGTGCTGTGAACAAGCATGA 58.322 45.000 0.00 0.00 40.84 3.07
2555 3217 2.717580 ATGTGCTGTGAACAAGCATG 57.282 45.000 0.92 0.00 40.84 4.06
2556 3218 6.375174 TCTTAATATGTGCTGTGAACAAGCAT 59.625 34.615 0.92 5.53 40.84 3.79
2557 3219 5.704978 TCTTAATATGTGCTGTGAACAAGCA 59.295 36.000 0.00 0.00 36.09 3.91
2558 3220 6.182039 TCTTAATATGTGCTGTGAACAAGC 57.818 37.500 0.00 0.00 0.00 4.01
2561 3223 9.836864 AGATTATCTTAATATGTGCTGTGAACA 57.163 29.630 0.00 0.00 0.00 3.18
2632 3294 8.457261 GCAACTATTCATGACAGATTTCTCTTT 58.543 33.333 9.90 0.00 0.00 2.52
2633 3295 7.201591 CGCAACTATTCATGACAGATTTCTCTT 60.202 37.037 9.90 0.00 0.00 2.85
2634 3296 6.257411 CGCAACTATTCATGACAGATTTCTCT 59.743 38.462 9.90 0.00 0.00 3.10
2635 3297 6.256539 TCGCAACTATTCATGACAGATTTCTC 59.743 38.462 9.90 0.00 0.00 2.87
2636 3298 6.108687 TCGCAACTATTCATGACAGATTTCT 58.891 36.000 9.90 0.00 0.00 2.52
2637 3299 6.349973 TCGCAACTATTCATGACAGATTTC 57.650 37.500 9.90 0.00 0.00 2.17
2638 3300 6.741992 TTCGCAACTATTCATGACAGATTT 57.258 33.333 9.90 0.00 0.00 2.17
2639 3301 6.238566 CCATTCGCAACTATTCATGACAGATT 60.239 38.462 9.90 0.00 0.00 2.40
2640 3302 5.237996 CCATTCGCAACTATTCATGACAGAT 59.762 40.000 9.90 0.00 0.00 2.90
2641 3303 4.571984 CCATTCGCAACTATTCATGACAGA 59.428 41.667 9.90 0.00 0.00 3.41
2642 3304 4.333649 ACCATTCGCAACTATTCATGACAG 59.666 41.667 0.00 0.00 0.00 3.51
2643 3305 4.260985 ACCATTCGCAACTATTCATGACA 58.739 39.130 0.00 0.00 0.00 3.58
2644 3306 4.882671 ACCATTCGCAACTATTCATGAC 57.117 40.909 0.00 0.00 0.00 3.06
2645 3307 5.185454 AGAACCATTCGCAACTATTCATGA 58.815 37.500 0.00 0.00 34.02 3.07
2646 3308 5.295292 AGAGAACCATTCGCAACTATTCATG 59.705 40.000 0.00 0.00 34.02 3.07
2647 3309 5.295292 CAGAGAACCATTCGCAACTATTCAT 59.705 40.000 0.00 0.00 34.02 2.57
2648 3310 4.631377 CAGAGAACCATTCGCAACTATTCA 59.369 41.667 0.00 0.00 34.02 2.57
2649 3311 4.631813 ACAGAGAACCATTCGCAACTATTC 59.368 41.667 0.00 0.00 34.02 1.75
2650 3312 4.579869 ACAGAGAACCATTCGCAACTATT 58.420 39.130 0.00 0.00 34.02 1.73
2651 3313 4.207891 ACAGAGAACCATTCGCAACTAT 57.792 40.909 0.00 0.00 34.02 2.12
2652 3314 3.678056 ACAGAGAACCATTCGCAACTA 57.322 42.857 0.00 0.00 34.02 2.24
2653 3315 2.550830 ACAGAGAACCATTCGCAACT 57.449 45.000 0.00 0.00 34.02 3.16
2654 3316 5.109903 AGTATACAGAGAACCATTCGCAAC 58.890 41.667 5.50 0.00 34.02 4.17
2655 3317 5.339008 AGTATACAGAGAACCATTCGCAA 57.661 39.130 5.50 0.00 34.02 4.85
2656 3318 6.650427 ATAGTATACAGAGAACCATTCGCA 57.350 37.500 5.50 0.00 34.02 5.10
2657 3319 7.115095 GTGAATAGTATACAGAGAACCATTCGC 59.885 40.741 5.50 4.22 34.02 4.70
2658 3320 8.135529 TGTGAATAGTATACAGAGAACCATTCG 58.864 37.037 5.50 0.00 34.02 3.34
2659 3321 9.988815 ATGTGAATAGTATACAGAGAACCATTC 57.011 33.333 5.50 2.26 0.00 2.67
2660 3322 9.988815 GATGTGAATAGTATACAGAGAACCATT 57.011 33.333 5.50 0.00 0.00 3.16
2661 3323 9.373450 AGATGTGAATAGTATACAGAGAACCAT 57.627 33.333 5.50 0.00 0.00 3.55
2662 3324 8.633561 CAGATGTGAATAGTATACAGAGAACCA 58.366 37.037 5.50 0.00 0.00 3.67
2663 3325 8.851145 TCAGATGTGAATAGTATACAGAGAACC 58.149 37.037 5.50 0.00 0.00 3.62
2664 3326 9.891828 CTCAGATGTGAATAGTATACAGAGAAC 57.108 37.037 5.50 0.00 30.14 3.01
2665 3327 9.634021 ACTCAGATGTGAATAGTATACAGAGAA 57.366 33.333 5.50 0.00 30.14 2.87
2666 3328 9.634021 AACTCAGATGTGAATAGTATACAGAGA 57.366 33.333 5.50 0.00 30.14 3.10
2675 3337 9.566432 AAAAAGAGAAACTCAGATGTGAATAGT 57.434 29.630 0.00 0.00 32.06 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.