Multiple sequence alignment - TraesCS3D01G272300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G272300 chr3D 100.000 5784 0 0 1 5784 378023343 378029126 0.000000e+00 10682.0
1 TraesCS3D01G272300 chr3D 93.214 560 33 3 5227 5784 591126573 591127129 0.000000e+00 819.0
2 TraesCS3D01G272300 chr3B 89.478 3412 219 82 663 4019 492567204 492570530 0.000000e+00 4183.0
3 TraesCS3D01G272300 chr3B 87.097 1147 90 21 4052 5178 492570529 492571637 0.000000e+00 1245.0
4 TraesCS3D01G272300 chr3B 92.857 56 4 0 613 668 492233708 492233763 1.340000e-11 82.4
5 TraesCS3D01G272300 chr3A 96.462 2374 66 13 2858 5228 502099187 502101545 0.000000e+00 3903.0
6 TraesCS3D01G272300 chr3A 93.558 2344 79 31 506 2829 502096903 502099194 0.000000e+00 3426.0
7 TraesCS3D01G272300 chr3A 79.679 187 21 8 1579 1760 46168414 46168240 1.020000e-22 119.0
8 TraesCS3D01G272300 chr7D 93.716 557 33 2 5230 5784 635693013 635692457 0.000000e+00 833.0
9 TraesCS3D01G272300 chr7D 93.165 556 34 2 5230 5784 17698757 17699309 0.000000e+00 813.0
10 TraesCS3D01G272300 chr7D 93.153 555 34 3 5232 5784 117521635 117521083 0.000000e+00 811.0
11 TraesCS3D01G272300 chr1D 93.705 556 33 2 5231 5784 319517716 319517161 0.000000e+00 832.0
12 TraesCS3D01G272300 chr5D 93.537 557 30 4 5230 5784 554393804 554394356 0.000000e+00 824.0
13 TraesCS3D01G272300 chr5D 93.321 554 35 2 5233 5784 389374131 389374684 0.000000e+00 817.0
14 TraesCS3D01G272300 chr4D 93.153 555 36 2 5232 5784 455275781 455276335 0.000000e+00 813.0
15 TraesCS3D01G272300 chr1A 92.883 562 34 4 5228 5784 58286500 58287060 0.000000e+00 811.0
16 TraesCS3D01G272300 chr5A 88.386 508 39 11 1 503 312506799 312506307 1.390000e-165 593.0
17 TraesCS3D01G272300 chr5A 90.808 359 15 1 1 341 317507079 317507437 1.140000e-126 464.0
18 TraesCS3D01G272300 chr5A 92.121 165 13 0 334 498 317507665 317507829 3.480000e-57 233.0
19 TraesCS3D01G272300 chr5B 91.346 104 9 0 1285 1388 369904606 369904503 6.040000e-30 143.0
20 TraesCS3D01G272300 chr2B 89.423 104 11 0 1285 1388 284931434 284931537 1.310000e-26 132.0
21 TraesCS3D01G272300 chr2B 91.549 71 6 0 1579 1649 775168197 775168127 1.330000e-16 99.0
22 TraesCS3D01G272300 chr2B 92.857 42 1 2 1804 1843 291611549 291611590 6.260000e-05 60.2
23 TraesCS3D01G272300 chr4A 81.343 134 14 5 1842 1965 514080031 514080163 1.330000e-16 99.0
24 TraesCS3D01G272300 chr6D 92.537 67 5 0 1899 1965 386931405 386931471 4.770000e-16 97.1
25 TraesCS3D01G272300 chr6B 80.597 134 16 4 1842 1965 641305566 641305433 1.720000e-15 95.3
26 TraesCS3D01G272300 chr7B 85.938 64 9 0 1587 1650 374560306 374560369 1.040000e-07 69.4
27 TraesCS3D01G272300 chr4B 88.333 60 3 4 1842 1900 464962839 464962895 1.040000e-07 69.4
28 TraesCS3D01G272300 chr1B 100.000 31 0 0 1842 1872 256202225 256202255 2.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G272300 chr3D 378023343 378029126 5783 False 10682.0 10682 100.0000 1 5784 1 chr3D.!!$F1 5783
1 TraesCS3D01G272300 chr3D 591126573 591127129 556 False 819.0 819 93.2140 5227 5784 1 chr3D.!!$F2 557
2 TraesCS3D01G272300 chr3B 492567204 492571637 4433 False 2714.0 4183 88.2875 663 5178 2 chr3B.!!$F2 4515
3 TraesCS3D01G272300 chr3A 502096903 502101545 4642 False 3664.5 3903 95.0100 506 5228 2 chr3A.!!$F1 4722
4 TraesCS3D01G272300 chr7D 635692457 635693013 556 True 833.0 833 93.7160 5230 5784 1 chr7D.!!$R2 554
5 TraesCS3D01G272300 chr7D 17698757 17699309 552 False 813.0 813 93.1650 5230 5784 1 chr7D.!!$F1 554
6 TraesCS3D01G272300 chr7D 117521083 117521635 552 True 811.0 811 93.1530 5232 5784 1 chr7D.!!$R1 552
7 TraesCS3D01G272300 chr1D 319517161 319517716 555 True 832.0 832 93.7050 5231 5784 1 chr1D.!!$R1 553
8 TraesCS3D01G272300 chr5D 554393804 554394356 552 False 824.0 824 93.5370 5230 5784 1 chr5D.!!$F2 554
9 TraesCS3D01G272300 chr5D 389374131 389374684 553 False 817.0 817 93.3210 5233 5784 1 chr5D.!!$F1 551
10 TraesCS3D01G272300 chr4D 455275781 455276335 554 False 813.0 813 93.1530 5232 5784 1 chr4D.!!$F1 552
11 TraesCS3D01G272300 chr1A 58286500 58287060 560 False 811.0 811 92.8830 5228 5784 1 chr1A.!!$F1 556
12 TraesCS3D01G272300 chr5A 317507079 317507829 750 False 348.5 464 91.4645 1 498 2 chr5A.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 401 0.035458 GCCACCGGAGATAAGGATGG 59.965 60.000 9.46 2.3 0.0 3.51 F
403 404 0.267960 ACCGGAGATAAGGATGGGGT 59.732 55.000 9.46 0.0 0.0 4.95 F
494 495 0.316689 CAGCCGGTTGAAACGAACAC 60.317 55.000 13.89 0.0 0.0 3.32 F
1573 1762 0.321671 CTGACTTTCGCTTGGGAGGA 59.678 55.000 0.00 0.0 0.0 3.71 F
2459 2660 0.251787 GGAAAGCAACATGGAGGGGT 60.252 55.000 0.00 0.0 0.0 4.95 F
2785 2986 2.375174 AGGTTTGTCTTGGGCTGATGTA 59.625 45.455 0.00 0.0 0.0 2.29 F
3598 3823 2.689658 TGAGGGATGATACCGGACATT 58.310 47.619 9.46 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2017 1.064825 CTTATACTCCCCCGCCCAAT 58.935 55.000 0.00 0.00 0.0 3.16 R
1948 2141 1.192428 ATGTACTCCCTCCGTTCACC 58.808 55.000 0.00 0.00 0.0 4.02 R
2233 2431 3.422217 CGTATTCAGGAACATCACGATCG 59.578 47.826 14.88 14.88 0.0 3.69 R
2881 3091 0.875059 CAAAAGGAAGCCGTGAGTCC 59.125 55.000 0.00 0.00 0.0 3.85 R
3591 3816 0.523072 CTGCCACCTTCAAATGTCCG 59.477 55.000 0.00 0.00 0.0 4.79 R
4729 4967 2.687935 GCCCTCATTGCGATCCTTTTTA 59.312 45.455 0.00 0.00 0.0 1.52 R
5418 5666 0.320421 GGTTTGGCTGCGAGTCTGTA 60.320 55.000 0.00 0.00 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.184683 CAGCGCCGTCTCTGCTTC 61.185 66.667 2.29 0.00 36.69 3.86
19 20 4.443266 AGCGCCGTCTCTGCTTCC 62.443 66.667 2.29 0.00 34.80 3.46
40 41 4.740822 GGCCCCACGTTGCTCCAT 62.741 66.667 0.00 0.00 0.00 3.41
41 42 2.676471 GCCCCACGTTGCTCCATT 60.676 61.111 0.00 0.00 0.00 3.16
42 43 2.993471 GCCCCACGTTGCTCCATTG 61.993 63.158 0.00 0.00 0.00 2.82
43 44 2.568090 CCCACGTTGCTCCATTGC 59.432 61.111 0.00 0.00 0.00 3.56
44 45 2.267351 CCCACGTTGCTCCATTGCA 61.267 57.895 0.00 0.00 41.65 4.08
50 51 1.659233 TTGCTCCATTGCAACACCG 59.341 52.632 0.00 0.00 46.43 4.94
51 52 0.821301 TTGCTCCATTGCAACACCGA 60.821 50.000 0.00 0.00 46.43 4.69
52 53 1.210155 GCTCCATTGCAACACCGAC 59.790 57.895 0.00 0.00 0.00 4.79
53 54 1.497278 CTCCATTGCAACACCGACG 59.503 57.895 0.00 0.00 0.00 5.12
54 55 1.911293 CTCCATTGCAACACCGACGG 61.911 60.000 13.61 13.61 0.00 4.79
55 56 2.258013 CCATTGCAACACCGACGGT 61.258 57.895 15.37 15.37 35.62 4.83
70 71 4.699522 GGTGCTCCCGAACGGCTT 62.700 66.667 7.80 0.00 0.00 4.35
71 72 3.119096 GTGCTCCCGAACGGCTTC 61.119 66.667 7.80 0.00 0.00 3.86
72 73 3.621805 TGCTCCCGAACGGCTTCA 61.622 61.111 7.80 2.12 0.00 3.02
73 74 2.358247 GCTCCCGAACGGCTTCAA 60.358 61.111 7.80 0.00 0.00 2.69
74 75 2.391389 GCTCCCGAACGGCTTCAAG 61.391 63.158 7.80 1.55 0.00 3.02
75 76 1.741770 CTCCCGAACGGCTTCAAGG 60.742 63.158 7.80 0.00 0.00 3.61
76 77 3.431725 CCCGAACGGCTTCAAGGC 61.432 66.667 7.80 0.00 37.44 4.35
77 78 2.668212 CCGAACGGCTTCAAGGCA 60.668 61.111 12.15 0.00 41.44 4.75
78 79 2.680913 CCGAACGGCTTCAAGGCAG 61.681 63.158 12.15 6.52 41.44 4.85
79 80 2.563427 GAACGGCTTCAAGGCAGC 59.437 61.111 12.15 0.00 41.44 5.25
80 81 2.203337 AACGGCTTCAAGGCAGCA 60.203 55.556 12.15 0.00 41.44 4.41
81 82 1.589716 GAACGGCTTCAAGGCAGCAT 61.590 55.000 12.15 0.00 41.44 3.79
82 83 1.589716 AACGGCTTCAAGGCAGCATC 61.590 55.000 12.15 0.00 41.44 3.91
83 84 2.796651 GGCTTCAAGGCAGCATCG 59.203 61.111 5.98 0.00 40.97 3.84
84 85 2.101770 GCTTCAAGGCAGCATCGC 59.898 61.111 0.00 0.00 37.22 4.58
92 93 2.789917 GCAGCATCGCCAGAGTTG 59.210 61.111 0.00 0.00 0.00 3.16
93 94 2.789917 CAGCATCGCCAGAGTTGC 59.210 61.111 0.00 0.00 37.16 4.17
94 95 2.036571 CAGCATCGCCAGAGTTGCA 61.037 57.895 7.11 0.00 38.81 4.08
95 96 1.744368 AGCATCGCCAGAGTTGCAG 60.744 57.895 7.11 0.00 38.81 4.41
96 97 1.742880 GCATCGCCAGAGTTGCAGA 60.743 57.895 0.34 0.00 36.96 4.26
97 98 1.703438 GCATCGCCAGAGTTGCAGAG 61.703 60.000 0.34 0.00 36.96 3.35
98 99 1.449246 ATCGCCAGAGTTGCAGAGC 60.449 57.895 0.00 0.00 0.00 4.09
99 100 2.866085 ATCGCCAGAGTTGCAGAGCC 62.866 60.000 0.00 0.00 0.00 4.70
100 101 2.749441 GCCAGAGTTGCAGAGCCC 60.749 66.667 0.00 0.00 0.00 5.19
101 102 2.045536 CCAGAGTTGCAGAGCCCC 60.046 66.667 0.00 0.00 0.00 5.80
102 103 2.045536 CAGAGTTGCAGAGCCCCC 60.046 66.667 0.00 0.00 0.00 5.40
103 104 3.710722 AGAGTTGCAGAGCCCCCG 61.711 66.667 0.00 0.00 0.00 5.73
104 105 4.021925 GAGTTGCAGAGCCCCCGT 62.022 66.667 0.00 0.00 0.00 5.28
105 106 3.959991 GAGTTGCAGAGCCCCCGTC 62.960 68.421 0.00 0.00 0.00 4.79
115 116 4.109675 CCCCCGTCGGCCAATCTT 62.110 66.667 5.50 0.00 0.00 2.40
116 117 2.513897 CCCCGTCGGCCAATCTTC 60.514 66.667 5.50 0.00 0.00 2.87
117 118 2.890474 CCCGTCGGCCAATCTTCG 60.890 66.667 5.50 0.00 0.00 3.79
118 119 2.125673 CCGTCGGCCAATCTTCGT 60.126 61.111 2.24 0.00 0.00 3.85
119 120 2.452813 CCGTCGGCCAATCTTCGTG 61.453 63.158 2.24 0.00 0.00 4.35
120 121 2.452813 CGTCGGCCAATCTTCGTGG 61.453 63.158 2.24 0.00 39.33 4.94
121 122 1.079405 GTCGGCCAATCTTCGTGGA 60.079 57.895 2.24 0.00 38.54 4.02
122 123 1.079405 TCGGCCAATCTTCGTGGAC 60.079 57.895 2.24 0.00 41.22 4.02
123 124 1.375396 CGGCCAATCTTCGTGGACA 60.375 57.895 2.24 0.00 45.40 4.02
124 125 0.744414 CGGCCAATCTTCGTGGACAT 60.744 55.000 2.24 0.00 45.40 3.06
125 126 1.017387 GGCCAATCTTCGTGGACATC 58.983 55.000 0.00 0.00 44.41 3.06
126 127 0.652592 GCCAATCTTCGTGGACATCG 59.347 55.000 0.00 0.00 38.54 3.84
127 128 2.007049 GCCAATCTTCGTGGACATCGT 61.007 52.381 0.00 0.00 38.54 3.73
128 129 1.927174 CCAATCTTCGTGGACATCGTC 59.073 52.381 0.00 0.00 38.54 4.20
129 130 1.583856 CAATCTTCGTGGACATCGTCG 59.416 52.381 0.00 0.00 32.65 5.12
130 131 0.525668 ATCTTCGTGGACATCGTCGC 60.526 55.000 0.00 0.00 32.65 5.19
131 132 1.443702 CTTCGTGGACATCGTCGCA 60.444 57.895 0.00 0.00 32.65 5.10
132 133 1.406219 CTTCGTGGACATCGTCGCAG 61.406 60.000 0.00 0.00 32.65 5.18
133 134 3.545481 CGTGGACATCGTCGCAGC 61.545 66.667 0.00 0.00 32.65 5.25
134 135 3.545481 GTGGACATCGTCGCAGCG 61.545 66.667 9.06 9.06 32.65 5.18
135 136 4.794439 TGGACATCGTCGCAGCGG 62.794 66.667 16.42 0.00 32.65 5.52
152 153 4.183686 GCGCACGCTCCATTGCAT 62.184 61.111 7.96 0.00 38.76 3.96
153 154 2.023741 CGCACGCTCCATTGCATC 59.976 61.111 0.00 0.00 38.76 3.91
154 155 2.466982 CGCACGCTCCATTGCATCT 61.467 57.895 0.00 0.00 38.76 2.90
155 156 1.354506 GCACGCTCCATTGCATCTC 59.645 57.895 0.00 0.00 38.68 2.75
156 157 2.020131 CACGCTCCATTGCATCTCC 58.980 57.895 0.00 0.00 0.00 3.71
157 158 1.522355 ACGCTCCATTGCATCTCCG 60.522 57.895 0.00 0.00 0.00 4.63
158 159 2.249535 CGCTCCATTGCATCTCCGG 61.250 63.158 0.00 0.00 0.00 5.14
159 160 1.895707 GCTCCATTGCATCTCCGGG 60.896 63.158 0.00 0.00 0.00 5.73
160 161 1.895707 CTCCATTGCATCTCCGGGC 60.896 63.158 0.00 0.00 0.00 6.13
161 162 2.124193 CCATTGCATCTCCGGGCA 60.124 61.111 0.00 0.00 38.46 5.36
162 163 2.191513 CCATTGCATCTCCGGGCAG 61.192 63.158 0.00 0.00 41.68 4.85
163 164 2.517875 ATTGCATCTCCGGGCAGC 60.518 61.111 0.00 1.41 41.68 5.25
164 165 3.052909 ATTGCATCTCCGGGCAGCT 62.053 57.895 0.00 0.00 41.68 4.24
165 166 2.955022 ATTGCATCTCCGGGCAGCTC 62.955 60.000 0.00 0.00 41.68 4.09
222 223 4.840005 GCTGCCCGTCTGTAGCCC 62.840 72.222 0.00 0.00 37.93 5.19
223 224 3.390521 CTGCCCGTCTGTAGCCCA 61.391 66.667 0.00 0.00 0.00 5.36
224 225 2.925706 TGCCCGTCTGTAGCCCAA 60.926 61.111 0.00 0.00 0.00 4.12
225 226 2.436115 GCCCGTCTGTAGCCCAAC 60.436 66.667 0.00 0.00 0.00 3.77
226 227 2.125673 CCCGTCTGTAGCCCAACG 60.126 66.667 0.00 0.00 35.01 4.10
227 228 2.813908 CCGTCTGTAGCCCAACGC 60.814 66.667 0.00 0.00 33.95 4.84
228 229 2.813908 CGTCTGTAGCCCAACGCC 60.814 66.667 0.00 0.00 38.78 5.68
229 230 2.663196 GTCTGTAGCCCAACGCCT 59.337 61.111 0.00 0.00 38.78 5.52
230 231 1.448013 GTCTGTAGCCCAACGCCTC 60.448 63.158 0.00 0.00 38.78 4.70
231 232 2.125106 CTGTAGCCCAACGCCTCC 60.125 66.667 0.00 0.00 38.78 4.30
232 233 2.925706 TGTAGCCCAACGCCTCCA 60.926 61.111 0.00 0.00 38.78 3.86
233 234 2.125106 GTAGCCCAACGCCTCCAG 60.125 66.667 0.00 0.00 38.78 3.86
234 235 4.096003 TAGCCCAACGCCTCCAGC 62.096 66.667 0.00 0.00 38.78 4.85
237 238 4.020617 CCCAACGCCTCCAGCAGA 62.021 66.667 0.00 0.00 44.04 4.26
238 239 2.270205 CCAACGCCTCCAGCAGAT 59.730 61.111 0.00 0.00 44.04 2.90
239 240 2.110967 CCAACGCCTCCAGCAGATG 61.111 63.158 0.00 0.00 44.04 2.90
240 241 1.078918 CAACGCCTCCAGCAGATGA 60.079 57.895 0.00 0.00 44.04 2.92
241 242 0.463295 CAACGCCTCCAGCAGATGAT 60.463 55.000 0.00 0.00 44.04 2.45
242 243 0.463295 AACGCCTCCAGCAGATGATG 60.463 55.000 0.00 0.00 44.04 3.07
249 250 2.827800 CCAGCAGATGATGGTCGTAT 57.172 50.000 8.97 0.00 45.94 3.06
250 251 2.681706 CCAGCAGATGATGGTCGTATC 58.318 52.381 8.97 0.00 45.94 2.24
251 252 2.298446 CCAGCAGATGATGGTCGTATCT 59.702 50.000 8.97 0.00 45.94 1.98
252 253 3.573598 CAGCAGATGATGGTCGTATCTC 58.426 50.000 0.00 0.00 37.60 2.75
253 254 3.255395 CAGCAGATGATGGTCGTATCTCT 59.745 47.826 0.00 0.00 37.60 3.10
254 255 3.505680 AGCAGATGATGGTCGTATCTCTC 59.494 47.826 0.00 0.00 33.17 3.20
255 256 3.254411 GCAGATGATGGTCGTATCTCTCA 59.746 47.826 0.00 0.00 0.00 3.27
256 257 4.793071 CAGATGATGGTCGTATCTCTCAC 58.207 47.826 0.00 0.00 0.00 3.51
257 258 4.276926 CAGATGATGGTCGTATCTCTCACA 59.723 45.833 0.00 0.00 0.00 3.58
258 259 4.889995 AGATGATGGTCGTATCTCTCACAA 59.110 41.667 0.00 0.00 0.00 3.33
259 260 4.371855 TGATGGTCGTATCTCTCACAAC 57.628 45.455 0.00 0.00 0.00 3.32
260 261 3.761752 TGATGGTCGTATCTCTCACAACA 59.238 43.478 0.00 0.00 0.00 3.33
261 262 4.219725 TGATGGTCGTATCTCTCACAACAA 59.780 41.667 0.00 0.00 0.00 2.83
262 263 3.909430 TGGTCGTATCTCTCACAACAAC 58.091 45.455 0.00 0.00 0.00 3.32
263 264 3.319689 TGGTCGTATCTCTCACAACAACA 59.680 43.478 0.00 0.00 0.00 3.33
264 265 4.202172 TGGTCGTATCTCTCACAACAACAA 60.202 41.667 0.00 0.00 0.00 2.83
265 266 4.150098 GGTCGTATCTCTCACAACAACAAC 59.850 45.833 0.00 0.00 0.00 3.32
266 267 4.743151 GTCGTATCTCTCACAACAACAACA 59.257 41.667 0.00 0.00 0.00 3.33
267 268 4.982295 TCGTATCTCTCACAACAACAACAG 59.018 41.667 0.00 0.00 0.00 3.16
268 269 4.745125 CGTATCTCTCACAACAACAACAGT 59.255 41.667 0.00 0.00 0.00 3.55
269 270 5.918576 CGTATCTCTCACAACAACAACAGTA 59.081 40.000 0.00 0.00 0.00 2.74
270 271 6.088217 CGTATCTCTCACAACAACAACAGTAG 59.912 42.308 0.00 0.00 0.00 2.57
271 272 4.119862 TCTCTCACAACAACAACAGTAGC 58.880 43.478 0.00 0.00 0.00 3.58
272 273 2.863740 TCTCACAACAACAACAGTAGCG 59.136 45.455 0.00 0.00 0.00 4.26
273 274 2.863740 CTCACAACAACAACAGTAGCGA 59.136 45.455 0.00 0.00 0.00 4.93
274 275 2.605818 TCACAACAACAACAGTAGCGAC 59.394 45.455 0.00 0.00 0.00 5.19
275 276 2.350192 CACAACAACAACAGTAGCGACA 59.650 45.455 0.00 0.00 0.00 4.35
276 277 2.607635 ACAACAACAACAGTAGCGACAG 59.392 45.455 0.00 0.00 0.00 3.51
277 278 2.863740 CAACAACAACAGTAGCGACAGA 59.136 45.455 0.00 0.00 0.00 3.41
278 279 2.743938 ACAACAACAGTAGCGACAGAG 58.256 47.619 0.00 0.00 0.00 3.35
279 280 2.361119 ACAACAACAGTAGCGACAGAGA 59.639 45.455 0.00 0.00 0.00 3.10
280 281 3.181479 ACAACAACAGTAGCGACAGAGAA 60.181 43.478 0.00 0.00 0.00 2.87
281 282 3.728076 ACAACAGTAGCGACAGAGAAA 57.272 42.857 0.00 0.00 0.00 2.52
282 283 4.054780 ACAACAGTAGCGACAGAGAAAA 57.945 40.909 0.00 0.00 0.00 2.29
283 284 4.051922 ACAACAGTAGCGACAGAGAAAAG 58.948 43.478 0.00 0.00 0.00 2.27
284 285 3.305398 ACAGTAGCGACAGAGAAAAGG 57.695 47.619 0.00 0.00 0.00 3.11
285 286 2.891580 ACAGTAGCGACAGAGAAAAGGA 59.108 45.455 0.00 0.00 0.00 3.36
286 287 3.057174 ACAGTAGCGACAGAGAAAAGGAG 60.057 47.826 0.00 0.00 0.00 3.69
287 288 3.191581 CAGTAGCGACAGAGAAAAGGAGA 59.808 47.826 0.00 0.00 0.00 3.71
288 289 3.827302 AGTAGCGACAGAGAAAAGGAGAA 59.173 43.478 0.00 0.00 0.00 2.87
289 290 3.311486 AGCGACAGAGAAAAGGAGAAG 57.689 47.619 0.00 0.00 0.00 2.85
290 291 1.729517 GCGACAGAGAAAAGGAGAAGC 59.270 52.381 0.00 0.00 0.00 3.86
291 292 2.868044 GCGACAGAGAAAAGGAGAAGCA 60.868 50.000 0.00 0.00 0.00 3.91
292 293 3.594134 CGACAGAGAAAAGGAGAAGCAT 58.406 45.455 0.00 0.00 0.00 3.79
293 294 3.370366 CGACAGAGAAAAGGAGAAGCATG 59.630 47.826 0.00 0.00 0.00 4.06
294 295 4.322567 GACAGAGAAAAGGAGAAGCATGT 58.677 43.478 0.00 0.00 0.00 3.21
295 296 4.322567 ACAGAGAAAAGGAGAAGCATGTC 58.677 43.478 0.00 0.00 0.00 3.06
296 297 3.688673 CAGAGAAAAGGAGAAGCATGTCC 59.311 47.826 0.00 0.00 39.30 4.02
297 298 3.328931 AGAGAAAAGGAGAAGCATGTCCA 59.671 43.478 7.95 0.00 41.48 4.02
298 299 4.018597 AGAGAAAAGGAGAAGCATGTCCAT 60.019 41.667 7.95 0.00 41.48 3.41
299 300 4.015084 AGAAAAGGAGAAGCATGTCCATG 58.985 43.478 7.95 2.86 41.48 3.66
300 301 2.431954 AAGGAGAAGCATGTCCATGG 57.568 50.000 4.97 4.97 41.48 3.66
301 302 0.106819 AGGAGAAGCATGTCCATGGC 60.107 55.000 6.96 2.72 41.48 4.40
302 303 1.442526 GGAGAAGCATGTCCATGGCG 61.443 60.000 6.96 0.00 38.85 5.69
303 304 0.462581 GAGAAGCATGTCCATGGCGA 60.463 55.000 6.96 0.00 39.16 5.54
304 305 0.463295 AGAAGCATGTCCATGGCGAG 60.463 55.000 6.96 0.00 39.16 5.03
305 306 1.442526 GAAGCATGTCCATGGCGAGG 61.443 60.000 6.96 0.00 39.16 4.63
306 307 1.913951 AAGCATGTCCATGGCGAGGA 61.914 55.000 6.96 0.00 39.16 3.71
307 308 1.890979 GCATGTCCATGGCGAGGAG 60.891 63.158 6.96 0.00 39.16 3.69
318 319 2.806929 CGAGGAGCAGCAGGAGAG 59.193 66.667 0.00 0.00 0.00 3.20
319 320 1.752310 CGAGGAGCAGCAGGAGAGA 60.752 63.158 0.00 0.00 0.00 3.10
320 321 1.727511 CGAGGAGCAGCAGGAGAGAG 61.728 65.000 0.00 0.00 0.00 3.20
321 322 1.381599 AGGAGCAGCAGGAGAGAGG 60.382 63.158 0.00 0.00 0.00 3.69
322 323 1.381056 GGAGCAGCAGGAGAGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
323 324 0.975040 GGAGCAGCAGGAGAGAGGAA 60.975 60.000 0.00 0.00 0.00 3.36
324 325 0.175531 GAGCAGCAGGAGAGAGGAAC 59.824 60.000 0.00 0.00 0.00 3.62
325 326 1.153667 GCAGCAGGAGAGAGGAACG 60.154 63.158 0.00 0.00 0.00 3.95
326 327 1.599606 GCAGCAGGAGAGAGGAACGA 61.600 60.000 0.00 0.00 0.00 3.85
327 328 1.110442 CAGCAGGAGAGAGGAACGAT 58.890 55.000 0.00 0.00 0.00 3.73
328 329 1.110442 AGCAGGAGAGAGGAACGATG 58.890 55.000 0.00 0.00 0.00 3.84
329 330 0.103937 GCAGGAGAGAGGAACGATGG 59.896 60.000 0.00 0.00 0.00 3.51
330 331 1.769026 CAGGAGAGAGGAACGATGGA 58.231 55.000 0.00 0.00 0.00 3.41
331 332 1.680735 CAGGAGAGAGGAACGATGGAG 59.319 57.143 0.00 0.00 0.00 3.86
332 333 1.566703 AGGAGAGAGGAACGATGGAGA 59.433 52.381 0.00 0.00 0.00 3.71
333 334 1.679153 GGAGAGAGGAACGATGGAGAC 59.321 57.143 0.00 0.00 0.00 3.36
334 335 1.332375 GAGAGAGGAACGATGGAGACG 59.668 57.143 0.00 0.00 0.00 4.18
335 336 1.065345 AGAGAGGAACGATGGAGACGA 60.065 52.381 0.00 0.00 34.70 4.20
336 337 1.743958 GAGAGGAACGATGGAGACGAA 59.256 52.381 0.00 0.00 34.70 3.85
337 338 1.746220 AGAGGAACGATGGAGACGAAG 59.254 52.381 0.00 0.00 34.70 3.79
338 339 0.818296 AGGAACGATGGAGACGAAGG 59.182 55.000 0.00 0.00 34.70 3.46
339 340 0.179108 GGAACGATGGAGACGAAGGG 60.179 60.000 0.00 0.00 34.70 3.95
340 341 0.179108 GAACGATGGAGACGAAGGGG 60.179 60.000 0.00 0.00 34.70 4.79
341 342 0.613853 AACGATGGAGACGAAGGGGA 60.614 55.000 0.00 0.00 34.70 4.81
342 343 0.397254 ACGATGGAGACGAAGGGGAT 60.397 55.000 0.00 0.00 34.70 3.85
343 344 0.315568 CGATGGAGACGAAGGGGATC 59.684 60.000 0.00 0.00 0.00 3.36
344 345 1.710816 GATGGAGACGAAGGGGATCT 58.289 55.000 0.00 0.00 0.00 2.75
345 346 1.342819 GATGGAGACGAAGGGGATCTG 59.657 57.143 0.00 0.00 0.00 2.90
346 347 0.687757 TGGAGACGAAGGGGATCTGG 60.688 60.000 0.00 0.00 0.00 3.86
347 348 0.397254 GGAGACGAAGGGGATCTGGA 60.397 60.000 0.00 0.00 0.00 3.86
348 349 1.036707 GAGACGAAGGGGATCTGGAG 58.963 60.000 0.00 0.00 0.00 3.86
349 350 0.631753 AGACGAAGGGGATCTGGAGA 59.368 55.000 0.00 0.00 0.00 3.71
350 351 1.007238 AGACGAAGGGGATCTGGAGAA 59.993 52.381 0.00 0.00 0.00 2.87
351 352 1.831736 GACGAAGGGGATCTGGAGAAA 59.168 52.381 0.00 0.00 0.00 2.52
352 353 2.236395 GACGAAGGGGATCTGGAGAAAA 59.764 50.000 0.00 0.00 0.00 2.29
353 354 2.237392 ACGAAGGGGATCTGGAGAAAAG 59.763 50.000 0.00 0.00 0.00 2.27
354 355 2.501723 CGAAGGGGATCTGGAGAAAAGA 59.498 50.000 0.00 0.00 0.00 2.52
355 356 3.431486 CGAAGGGGATCTGGAGAAAAGAG 60.431 52.174 0.00 0.00 0.00 2.85
356 357 3.498614 AGGGGATCTGGAGAAAAGAGA 57.501 47.619 0.00 0.00 0.00 3.10
357 358 4.019657 AGGGGATCTGGAGAAAAGAGAT 57.980 45.455 0.00 0.00 0.00 2.75
358 359 5.163259 AGGGGATCTGGAGAAAAGAGATA 57.837 43.478 0.00 0.00 0.00 1.98
359 360 5.542743 AGGGGATCTGGAGAAAAGAGATAA 58.457 41.667 0.00 0.00 0.00 1.75
360 361 5.606329 AGGGGATCTGGAGAAAAGAGATAAG 59.394 44.000 0.00 0.00 0.00 1.73
361 362 5.221823 GGGGATCTGGAGAAAAGAGATAAGG 60.222 48.000 0.00 0.00 0.00 2.69
362 363 5.604650 GGGATCTGGAGAAAAGAGATAAGGA 59.395 44.000 0.00 0.00 0.00 3.36
363 364 6.100424 GGGATCTGGAGAAAAGAGATAAGGAA 59.900 42.308 0.00 0.00 0.00 3.36
364 365 7.202176 GGGATCTGGAGAAAAGAGATAAGGAAT 60.202 40.741 0.00 0.00 0.00 3.01
365 366 7.661027 GGATCTGGAGAAAAGAGATAAGGAATG 59.339 40.741 0.00 0.00 0.00 2.67
366 367 6.893583 TCTGGAGAAAAGAGATAAGGAATGG 58.106 40.000 0.00 0.00 0.00 3.16
367 368 6.006275 TGGAGAAAAGAGATAAGGAATGGG 57.994 41.667 0.00 0.00 0.00 4.00
368 369 5.492524 TGGAGAAAAGAGATAAGGAATGGGT 59.507 40.000 0.00 0.00 0.00 4.51
369 370 5.825151 GGAGAAAAGAGATAAGGAATGGGTG 59.175 44.000 0.00 0.00 0.00 4.61
370 371 5.760131 AGAAAAGAGATAAGGAATGGGTGG 58.240 41.667 0.00 0.00 0.00 4.61
371 372 5.254032 AGAAAAGAGATAAGGAATGGGTGGT 59.746 40.000 0.00 0.00 0.00 4.16
372 373 5.536497 AAAGAGATAAGGAATGGGTGGTT 57.464 39.130 0.00 0.00 0.00 3.67
373 374 5.536497 AAGAGATAAGGAATGGGTGGTTT 57.464 39.130 0.00 0.00 0.00 3.27
374 375 5.117406 AGAGATAAGGAATGGGTGGTTTC 57.883 43.478 0.00 0.00 0.00 2.78
375 376 4.540099 AGAGATAAGGAATGGGTGGTTTCA 59.460 41.667 0.00 0.00 0.00 2.69
376 377 4.600062 AGATAAGGAATGGGTGGTTTCAC 58.400 43.478 0.00 0.00 42.91 3.18
377 378 1.616159 AAGGAATGGGTGGTTTCACG 58.384 50.000 0.00 0.00 44.50 4.35
378 379 0.476771 AGGAATGGGTGGTTTCACGT 59.523 50.000 0.00 0.00 44.50 4.49
379 380 0.596082 GGAATGGGTGGTTTCACGTG 59.404 55.000 9.94 9.94 44.50 4.49
380 381 0.039527 GAATGGGTGGTTTCACGTGC 60.040 55.000 11.67 0.00 44.50 5.34
381 382 1.791103 AATGGGTGGTTTCACGTGCG 61.791 55.000 11.67 0.00 44.50 5.34
382 383 4.322385 GGGTGGTTTCACGTGCGC 62.322 66.667 11.67 0.00 44.50 6.09
383 384 4.322385 GGTGGTTTCACGTGCGCC 62.322 66.667 11.67 12.81 44.50 6.53
384 385 3.578272 GTGGTTTCACGTGCGCCA 61.578 61.111 11.67 15.29 33.87 5.69
385 386 3.578272 TGGTTTCACGTGCGCCAC 61.578 61.111 11.67 1.96 0.00 5.01
386 387 4.322385 GGTTTCACGTGCGCCACC 62.322 66.667 11.67 9.89 0.00 4.61
387 388 4.659874 GTTTCACGTGCGCCACCG 62.660 66.667 11.67 7.37 37.57 4.94
393 394 4.201679 CGTGCGCCACCGGAGATA 62.202 66.667 9.46 0.00 34.75 1.98
394 395 2.185867 GTGCGCCACCGGAGATAA 59.814 61.111 9.46 0.00 34.75 1.75
395 396 1.883084 GTGCGCCACCGGAGATAAG 60.883 63.158 9.46 0.00 34.75 1.73
396 397 2.280186 GCGCCACCGGAGATAAGG 60.280 66.667 9.46 0.54 34.32 2.69
397 398 2.792947 GCGCCACCGGAGATAAGGA 61.793 63.158 9.46 0.00 34.32 3.36
398 399 2.050269 CGCCACCGGAGATAAGGAT 58.950 57.895 9.46 0.00 0.00 3.24
399 400 0.319900 CGCCACCGGAGATAAGGATG 60.320 60.000 9.46 0.00 0.00 3.51
400 401 0.035458 GCCACCGGAGATAAGGATGG 59.965 60.000 9.46 2.30 0.00 3.51
401 402 0.687354 CCACCGGAGATAAGGATGGG 59.313 60.000 9.46 0.00 0.00 4.00
402 403 0.687354 CACCGGAGATAAGGATGGGG 59.313 60.000 9.46 0.00 0.00 4.96
403 404 0.267960 ACCGGAGATAAGGATGGGGT 59.732 55.000 9.46 0.00 0.00 4.95
404 405 0.687354 CCGGAGATAAGGATGGGGTG 59.313 60.000 0.00 0.00 0.00 4.61
405 406 0.687354 CGGAGATAAGGATGGGGTGG 59.313 60.000 0.00 0.00 0.00 4.61
406 407 1.821088 GGAGATAAGGATGGGGTGGT 58.179 55.000 0.00 0.00 0.00 4.16
407 408 1.700186 GGAGATAAGGATGGGGTGGTC 59.300 57.143 0.00 0.00 0.00 4.02
408 409 1.700186 GAGATAAGGATGGGGTGGTCC 59.300 57.143 0.00 0.00 34.64 4.46
409 410 0.396811 GATAAGGATGGGGTGGTCCG 59.603 60.000 0.00 0.00 39.54 4.79
410 411 1.705997 ATAAGGATGGGGTGGTCCGC 61.706 60.000 0.00 0.00 45.39 5.54
437 438 4.201951 GTGGGCCTCACATACACG 57.798 61.111 16.71 0.00 45.39 4.49
438 439 1.295423 GTGGGCCTCACATACACGT 59.705 57.895 16.71 0.00 45.39 4.49
439 440 1.019278 GTGGGCCTCACATACACGTG 61.019 60.000 15.48 15.48 45.39 4.49
440 441 1.449601 GGGCCTCACATACACGTGG 60.450 63.158 21.57 4.47 37.50 4.94
441 442 2.106683 GGCCTCACATACACGTGGC 61.107 63.158 21.57 10.71 40.31 5.01
442 443 2.452813 GCCTCACATACACGTGGCG 61.453 63.158 21.57 9.99 37.50 5.69
443 444 1.214325 CCTCACATACACGTGGCGA 59.786 57.895 21.57 4.91 37.50 5.54
444 445 0.802222 CCTCACATACACGTGGCGAG 60.802 60.000 21.57 15.87 37.50 5.03
445 446 1.413767 CTCACATACACGTGGCGAGC 61.414 60.000 21.57 0.00 37.50 5.03
446 447 1.736282 CACATACACGTGGCGAGCA 60.736 57.895 21.57 0.00 33.05 4.26
447 448 1.083806 CACATACACGTGGCGAGCAT 61.084 55.000 21.57 0.00 33.05 3.79
448 449 0.458260 ACATACACGTGGCGAGCATA 59.542 50.000 21.57 0.98 0.00 3.14
449 450 1.131771 CATACACGTGGCGAGCATAG 58.868 55.000 21.57 0.00 0.00 2.23
450 451 0.597637 ATACACGTGGCGAGCATAGC 60.598 55.000 21.57 0.00 35.30 2.97
451 452 2.930012 TACACGTGGCGAGCATAGCG 62.930 60.000 21.57 0.00 37.72 4.26
461 462 2.840016 GCATAGCGCGCGACTTAG 59.160 61.111 37.18 23.19 0.00 2.18
462 463 2.840016 CATAGCGCGCGACTTAGC 59.160 61.111 37.18 15.14 0.00 3.09
463 464 1.944184 CATAGCGCGCGACTTAGCA 60.944 57.895 37.18 14.91 36.85 3.49
464 465 1.226859 ATAGCGCGCGACTTAGCAA 60.227 52.632 37.18 14.53 36.85 3.91
465 466 1.209275 ATAGCGCGCGACTTAGCAAG 61.209 55.000 37.18 0.00 36.85 4.01
466 467 4.852882 GCGCGCGACTTAGCAAGC 62.853 66.667 37.18 7.53 36.85 4.01
467 468 3.181967 CGCGCGACTTAGCAAGCT 61.182 61.111 28.94 0.00 36.85 3.74
468 469 2.397252 GCGCGACTTAGCAAGCTG 59.603 61.111 12.10 0.00 36.85 4.24
469 470 2.383527 GCGCGACTTAGCAAGCTGT 61.384 57.895 12.10 0.00 36.85 4.40
470 471 1.417592 CGCGACTTAGCAAGCTGTG 59.582 57.895 0.00 0.00 36.85 3.66
471 472 1.008875 CGCGACTTAGCAAGCTGTGA 61.009 55.000 0.00 0.00 36.85 3.58
472 473 1.148310 GCGACTTAGCAAGCTGTGAA 58.852 50.000 4.53 0.00 37.05 3.18
473 474 1.531149 GCGACTTAGCAAGCTGTGAAA 59.469 47.619 4.53 0.00 37.05 2.69
474 475 2.160417 GCGACTTAGCAAGCTGTGAAAT 59.840 45.455 4.53 0.00 37.05 2.17
475 476 3.726190 GCGACTTAGCAAGCTGTGAAATC 60.726 47.826 4.53 0.00 37.05 2.17
476 477 3.433274 CGACTTAGCAAGCTGTGAAATCA 59.567 43.478 4.53 0.00 0.00 2.57
477 478 4.435253 CGACTTAGCAAGCTGTGAAATCAG 60.435 45.833 4.53 0.00 38.35 2.90
485 486 1.522668 CTGTGAAATCAGCCGGTTGA 58.477 50.000 23.98 23.98 0.00 3.18
486 487 1.879380 CTGTGAAATCAGCCGGTTGAA 59.121 47.619 25.48 5.63 0.00 2.69
487 488 2.293122 CTGTGAAATCAGCCGGTTGAAA 59.707 45.455 25.48 8.53 0.00 2.69
488 489 2.034053 TGTGAAATCAGCCGGTTGAAAC 59.966 45.455 25.48 19.24 0.00 2.78
489 490 1.265635 TGAAATCAGCCGGTTGAAACG 59.734 47.619 25.48 0.00 0.00 3.60
490 491 1.533731 GAAATCAGCCGGTTGAAACGA 59.466 47.619 25.48 1.56 0.00 3.85
491 492 1.600023 AATCAGCCGGTTGAAACGAA 58.400 45.000 25.48 0.73 0.00 3.85
492 493 0.872388 ATCAGCCGGTTGAAACGAAC 59.128 50.000 25.48 0.00 0.00 3.95
493 494 0.462225 TCAGCCGGTTGAAACGAACA 60.462 50.000 19.64 0.00 0.00 3.18
494 495 0.316689 CAGCCGGTTGAAACGAACAC 60.317 55.000 13.89 0.00 0.00 3.32
495 496 0.463116 AGCCGGTTGAAACGAACACT 60.463 50.000 3.25 0.00 0.00 3.55
496 497 0.379316 GCCGGTTGAAACGAACACTT 59.621 50.000 3.25 0.00 0.00 3.16
497 498 1.202211 GCCGGTTGAAACGAACACTTT 60.202 47.619 3.25 0.00 0.00 2.66
498 499 2.732912 GCCGGTTGAAACGAACACTTTT 60.733 45.455 3.25 0.00 0.00 2.27
499 500 3.103007 CCGGTTGAAACGAACACTTTTC 58.897 45.455 3.25 0.00 33.15 2.29
500 501 3.103007 CGGTTGAAACGAACACTTTTCC 58.897 45.455 0.00 0.00 31.76 3.13
501 502 3.181504 CGGTTGAAACGAACACTTTTCCT 60.182 43.478 0.00 0.00 31.76 3.36
502 503 4.673320 CGGTTGAAACGAACACTTTTCCTT 60.673 41.667 0.00 0.00 31.76 3.36
503 504 5.165676 GGTTGAAACGAACACTTTTCCTTT 58.834 37.500 0.00 0.00 31.76 3.11
504 505 5.636121 GGTTGAAACGAACACTTTTCCTTTT 59.364 36.000 0.00 0.00 31.76 2.27
556 557 3.550950 TTGTGATTTGCATGGTGTACG 57.449 42.857 0.00 0.00 0.00 3.67
570 571 6.035112 GCATGGTGTACGAAGAAAAACAAAAA 59.965 34.615 0.00 0.00 0.00 1.94
590 591 2.060050 TCTGGCTAGGAGCTGTAGAC 57.940 55.000 0.00 0.00 41.99 2.59
597 598 3.732471 GCTAGGAGCTGTAGACGTTCTTG 60.732 52.174 0.00 0.00 38.45 3.02
652 657 0.447406 CGTACACGATACGACCACCA 59.553 55.000 15.70 0.00 42.94 4.17
723 738 1.677217 GGATCAGCTGTCACCAACTCC 60.677 57.143 14.67 4.88 0.00 3.85
736 751 2.902457 AACTCCAATCCGCGGGGTT 61.902 57.895 27.83 17.94 42.62 4.11
737 752 1.555477 AACTCCAATCCGCGGGGTTA 61.555 55.000 27.83 5.87 45.66 2.85
780 795 2.773487 CCACCGTTTCATACCACAAGA 58.227 47.619 0.00 0.00 0.00 3.02
784 799 1.393539 CGTTTCATACCACAAGAGGCG 59.606 52.381 0.00 0.00 0.00 5.52
785 800 1.130561 GTTTCATACCACAAGAGGCGC 59.869 52.381 0.00 0.00 0.00 6.53
789 804 1.933853 CATACCACAAGAGGCGCTTAC 59.066 52.381 7.64 0.00 34.31 2.34
791 806 1.263356 ACCACAAGAGGCGCTTACTA 58.737 50.000 7.64 0.00 34.31 1.82
792 807 1.067071 ACCACAAGAGGCGCTTACTAC 60.067 52.381 7.64 0.00 34.31 2.73
794 809 2.531206 CACAAGAGGCGCTTACTACTC 58.469 52.381 7.64 3.90 34.31 2.59
795 810 1.477295 ACAAGAGGCGCTTACTACTCC 59.523 52.381 7.64 0.00 34.31 3.85
797 812 2.950309 CAAGAGGCGCTTACTACTCCTA 59.050 50.000 7.64 0.00 34.31 2.94
798 813 2.574450 AGAGGCGCTTACTACTCCTAC 58.426 52.381 7.64 0.00 0.00 3.18
800 815 3.390639 AGAGGCGCTTACTACTCCTACTA 59.609 47.826 7.64 0.00 0.00 1.82
801 816 3.742385 AGGCGCTTACTACTCCTACTAG 58.258 50.000 7.64 0.00 0.00 2.57
802 817 3.136260 AGGCGCTTACTACTCCTACTAGT 59.864 47.826 7.64 0.00 0.00 2.57
803 818 4.346418 AGGCGCTTACTACTCCTACTAGTA 59.654 45.833 7.64 1.89 0.00 1.82
905 938 0.676782 CAAACCCCCTCGCTCGATTT 60.677 55.000 0.00 0.00 0.00 2.17
907 940 2.109181 CCCCCTCGCTCGATTTCC 59.891 66.667 0.00 0.00 0.00 3.13
908 941 2.435693 CCCCCTCGCTCGATTTCCT 61.436 63.158 0.00 0.00 0.00 3.36
909 942 1.522569 CCCCTCGCTCGATTTCCTT 59.477 57.895 0.00 0.00 0.00 3.36
910 943 0.750850 CCCCTCGCTCGATTTCCTTA 59.249 55.000 0.00 0.00 0.00 2.69
1133 1178 3.353836 TGAAAACGGCGCTGAGGC 61.354 61.111 25.98 9.59 42.76 4.70
1430 1619 6.475504 TCTGCTTTCTTGATAACCTCATCAA 58.524 36.000 0.00 0.00 41.49 2.57
1438 1627 7.974675 TCTTGATAACCTCATCAATTTTCGAC 58.025 34.615 0.00 0.00 42.49 4.20
1446 1635 4.013728 TCATCAATTTTCGACGGGGATTT 58.986 39.130 0.00 0.00 0.00 2.17
1573 1762 0.321671 CTGACTTTCGCTTGGGAGGA 59.678 55.000 0.00 0.00 0.00 3.71
1577 1766 1.630878 ACTTTCGCTTGGGAGGAGATT 59.369 47.619 6.98 0.00 0.00 2.40
1786 1976 3.139077 CCAGTCGCTGGTTAAGAGTTTT 58.861 45.455 15.27 0.00 45.82 2.43
1937 2130 5.871834 TCCGATTCAGAAAAGGGTTAGAAA 58.128 37.500 7.26 0.00 0.00 2.52
2233 2431 2.945008 TGCTCCTATGCATGTTAACAGC 59.055 45.455 14.65 16.52 38.12 4.40
2310 2508 6.942532 TGGCAAAGATTTAGCTAAGGTATG 57.057 37.500 6.24 5.36 0.00 2.39
2338 2539 9.453325 GTTAACTAGCAGTCATGATTACTCTAC 57.547 37.037 0.00 0.00 0.00 2.59
2459 2660 0.251787 GGAAAGCAACATGGAGGGGT 60.252 55.000 0.00 0.00 0.00 4.95
2785 2986 2.375174 AGGTTTGTCTTGGGCTGATGTA 59.625 45.455 0.00 0.00 0.00 2.29
2831 3032 7.822749 TGATATCTGATAGTCCCTAGTCTCT 57.177 40.000 3.98 0.00 0.00 3.10
2834 3035 5.977821 TCTGATAGTCCCTAGTCTCTTCA 57.022 43.478 0.00 0.00 0.00 3.02
2839 3049 9.308000 CTGATAGTCCCTAGTCTCTTCATAATT 57.692 37.037 0.00 0.00 0.00 1.40
2849 3059 9.482627 CTAGTCTCTTCATAATTAACCACCATC 57.517 37.037 0.00 0.00 0.00 3.51
2851 3061 8.497745 AGTCTCTTCATAATTAACCACCATCAT 58.502 33.333 0.00 0.00 0.00 2.45
2852 3062 9.125026 GTCTCTTCATAATTAACCACCATCATT 57.875 33.333 0.00 0.00 0.00 2.57
2881 3091 6.166982 CCCTAGTCAAACTTTTCTAGGTCTG 58.833 44.000 18.66 8.15 44.52 3.51
2913 3123 6.148811 CGGCTTCCTTTTGAACTAGTATTTGA 59.851 38.462 0.00 0.00 0.00 2.69
2982 3199 3.579586 AGTACAAATGAGTTACCGGTCCA 59.420 43.478 12.40 5.79 0.00 4.02
3072 3289 6.732154 GCTATGTGCTGTATGATTTCAACAT 58.268 36.000 0.00 0.00 38.95 2.71
3150 3368 6.825721 AGGCCTTCAGTTGACTATCAAAATAG 59.174 38.462 0.00 0.00 38.22 1.73
3331 3549 8.960591 ACAGGGACTCTATTATTGATGTTTTTG 58.039 33.333 0.00 0.00 34.60 2.44
3379 3597 4.994852 CCTAACTCGTGGATCTTTGTTCAA 59.005 41.667 0.00 0.00 0.00 2.69
3472 3690 7.095355 GCCTTCGTGAGTACTTTATCTCAAAAA 60.095 37.037 0.00 0.00 41.41 1.94
3591 3816 9.965902 AATAGAAACATATTGAGGGATGATACC 57.034 33.333 0.00 0.00 0.00 2.73
3594 3819 4.425772 ACATATTGAGGGATGATACCGGA 58.574 43.478 9.46 0.00 0.00 5.14
3598 3823 2.689658 TGAGGGATGATACCGGACATT 58.310 47.619 9.46 0.00 0.00 2.71
3705 3930 6.473455 GCAATGCCTGTAAGCTTATTAACTTG 59.527 38.462 9.88 10.40 0.00 3.16
3710 3935 9.893634 TGCCTGTAAGCTTATTAACTTGTTATA 57.106 29.630 9.88 0.00 0.00 0.98
4123 4351 5.635278 TTCAGATGATTGAAGGATGCCTA 57.365 39.130 0.00 0.00 32.39 3.93
4216 4444 3.825014 CTCCTGCAAAGCATTATGCCTAT 59.175 43.478 14.10 0.00 46.52 2.57
4393 4631 7.103641 TGTACTGTTTCCTCCAGATAACATTC 58.896 38.462 0.00 0.00 34.04 2.67
4427 4665 6.234177 ACTTTAGTTTGTCTTCCATCCTGAG 58.766 40.000 0.00 0.00 0.00 3.35
4429 4667 4.713792 AGTTTGTCTTCCATCCTGAGTT 57.286 40.909 0.00 0.00 0.00 3.01
4457 4695 8.621532 TGACTTGATTGCTTGACTACTTTATT 57.378 30.769 0.00 0.00 0.00 1.40
4594 4832 5.236478 CGTTGGAAGGTAATAGCTTATGGTG 59.764 44.000 4.56 0.00 35.86 4.17
4610 4848 4.689612 ATGGTGTCTTATGGAATAGCGT 57.310 40.909 0.00 0.00 0.00 5.07
4614 4852 5.361571 TGGTGTCTTATGGAATAGCGTTCTA 59.638 40.000 5.14 0.04 0.00 2.10
4658 4896 2.778299 TGCATTGTTCTAGCGAAGGTT 58.222 42.857 0.00 0.00 40.68 3.50
4667 4905 4.537135 TCTAGCGAAGGTTTTCTCATGT 57.463 40.909 0.00 0.00 40.68 3.21
4729 4967 1.798813 CTTAGCTTCGAAGGTTTGCGT 59.201 47.619 32.36 8.85 37.92 5.24
5092 5333 4.301628 CTCTTTTGAGGAATGGTGTTTGC 58.698 43.478 0.00 0.00 42.66 3.68
5126 5373 3.415212 TCTTTCTGAAGGGCAATCTGTG 58.585 45.455 0.00 0.00 33.56 3.66
5210 5457 1.747355 CTGTCATCCCATGAAACAGGC 59.253 52.381 0.00 0.00 41.69 4.85
5258 5506 1.462627 AAAAGGAGGTGGACCCCGA 60.463 57.895 0.00 0.00 36.42 5.14
5272 5520 2.503061 CCGACCTCTGCATCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
5322 5570 9.787435 ATTATTCACACAAGACCTTACAAAGTA 57.213 29.630 0.00 0.00 0.00 2.24
5367 5615 1.132453 CGTCTAGGCAACATCTGTCGA 59.868 52.381 0.00 0.00 41.41 4.20
5374 5622 2.474816 GCAACATCTGTCGATACTCCC 58.525 52.381 0.00 0.00 0.00 4.30
5378 5626 3.838565 ACATCTGTCGATACTCCCATCT 58.161 45.455 0.00 0.00 0.00 2.90
5406 5654 6.314917 TGATGTAGGGATGCTAATAGTCTGA 58.685 40.000 0.00 0.00 0.00 3.27
5415 5663 7.070571 GGGATGCTAATAGTCTGAGCCTAATAT 59.929 40.741 0.00 0.00 35.24 1.28
5418 5666 8.601047 TGCTAATAGTCTGAGCCTAATATCAT 57.399 34.615 0.00 0.00 35.24 2.45
5618 5867 2.745100 TCTAGCTGCCGTCGACGT 60.745 61.111 33.49 18.95 37.74 4.34
5671 5920 0.179127 CTCGTCCATCATCACACGCT 60.179 55.000 0.00 0.00 32.21 5.07
5718 5970 4.873129 CCGAGACCCGCCGTCATG 62.873 72.222 4.01 0.00 44.66 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.740822 ATGGAGCAACGTGGGGCC 62.741 66.667 0.00 0.00 0.00 5.80
24 25 2.676471 AATGGAGCAACGTGGGGC 60.676 61.111 0.00 0.00 0.00 5.80
25 26 2.993471 GCAATGGAGCAACGTGGGG 61.993 63.158 0.00 0.00 0.00 4.96
26 27 2.267351 TGCAATGGAGCAACGTGGG 61.267 57.895 0.00 0.00 42.46 4.61
27 28 3.353600 TGCAATGGAGCAACGTGG 58.646 55.556 0.00 0.00 42.46 4.94
33 34 1.228094 TCGGTGTTGCAATGGAGCA 60.228 52.632 0.59 0.00 43.99 4.26
34 35 1.210155 GTCGGTGTTGCAATGGAGC 59.790 57.895 0.59 0.00 0.00 4.70
35 36 1.497278 CGTCGGTGTTGCAATGGAG 59.503 57.895 0.59 0.00 0.00 3.86
36 37 1.963855 CCGTCGGTGTTGCAATGGA 60.964 57.895 0.59 0.00 0.00 3.41
37 38 2.258013 ACCGTCGGTGTTGCAATGG 61.258 57.895 18.08 0.00 32.98 3.16
38 39 3.339731 ACCGTCGGTGTTGCAATG 58.660 55.556 18.08 0.00 32.98 2.82
53 54 4.699522 AAGCCGTTCGGGAGCACC 62.700 66.667 13.16 0.00 38.47 5.01
54 55 3.119096 GAAGCCGTTCGGGAGCAC 61.119 66.667 13.16 0.00 38.47 4.40
55 56 3.171828 TTGAAGCCGTTCGGGAGCA 62.172 57.895 13.16 0.00 38.47 4.26
56 57 2.358247 TTGAAGCCGTTCGGGAGC 60.358 61.111 13.16 0.00 38.47 4.70
57 58 1.741770 CCTTGAAGCCGTTCGGGAG 60.742 63.158 13.16 0.00 38.47 4.30
58 59 2.345991 CCTTGAAGCCGTTCGGGA 59.654 61.111 13.16 0.00 38.47 5.14
59 60 3.431725 GCCTTGAAGCCGTTCGGG 61.432 66.667 13.16 0.00 35.17 5.14
60 61 2.668212 TGCCTTGAAGCCGTTCGG 60.668 61.111 6.90 6.90 35.17 4.30
61 62 2.863153 CTGCCTTGAAGCCGTTCG 59.137 61.111 0.00 0.00 35.17 3.95
62 63 1.589716 ATGCTGCCTTGAAGCCGTTC 61.590 55.000 0.00 0.00 40.06 3.95
63 64 1.589716 GATGCTGCCTTGAAGCCGTT 61.590 55.000 0.00 0.00 40.06 4.44
64 65 2.034687 ATGCTGCCTTGAAGCCGT 59.965 55.556 0.00 0.00 40.06 5.68
65 66 2.796651 GATGCTGCCTTGAAGCCG 59.203 61.111 0.00 0.00 40.06 5.52
66 67 2.796651 CGATGCTGCCTTGAAGCC 59.203 61.111 0.00 0.00 40.06 4.35
67 68 2.101770 GCGATGCTGCCTTGAAGC 59.898 61.111 0.00 0.00 41.22 3.86
75 76 2.789917 CAACTCTGGCGATGCTGC 59.210 61.111 0.00 0.00 0.00 5.25
76 77 1.978712 CTGCAACTCTGGCGATGCTG 61.979 60.000 0.00 0.00 39.49 4.41
77 78 1.744368 CTGCAACTCTGGCGATGCT 60.744 57.895 0.00 0.00 39.49 3.79
78 79 1.703438 CTCTGCAACTCTGGCGATGC 61.703 60.000 0.00 0.00 39.22 3.91
79 80 1.703438 GCTCTGCAACTCTGGCGATG 61.703 60.000 0.00 0.00 0.00 3.84
80 81 1.449246 GCTCTGCAACTCTGGCGAT 60.449 57.895 0.00 0.00 0.00 4.58
81 82 2.047844 GCTCTGCAACTCTGGCGA 60.048 61.111 0.00 0.00 0.00 5.54
82 83 3.123620 GGCTCTGCAACTCTGGCG 61.124 66.667 0.00 0.00 0.00 5.69
83 84 2.749441 GGGCTCTGCAACTCTGGC 60.749 66.667 0.00 0.00 0.00 4.85
84 85 2.045536 GGGGCTCTGCAACTCTGG 60.046 66.667 0.00 0.00 0.00 3.86
85 86 2.045536 GGGGGCTCTGCAACTCTG 60.046 66.667 0.00 0.00 0.00 3.35
86 87 3.710722 CGGGGGCTCTGCAACTCT 61.711 66.667 0.00 0.00 0.00 3.24
87 88 3.959991 GACGGGGGCTCTGCAACTC 62.960 68.421 0.00 0.00 0.00 3.01
88 89 4.021925 GACGGGGGCTCTGCAACT 62.022 66.667 0.00 0.00 0.00 3.16
98 99 4.109675 AAGATTGGCCGACGGGGG 62.110 66.667 17.22 0.00 35.78 5.40
99 100 2.513897 GAAGATTGGCCGACGGGG 60.514 66.667 17.22 0.00 39.58 5.73
100 101 2.890474 CGAAGATTGGCCGACGGG 60.890 66.667 17.22 0.00 0.00 5.28
101 102 2.125673 ACGAAGATTGGCCGACGG 60.126 61.111 10.29 10.29 0.00 4.79
102 103 2.452813 CCACGAAGATTGGCCGACG 61.453 63.158 0.00 0.00 0.00 5.12
103 104 1.079405 TCCACGAAGATTGGCCGAC 60.079 57.895 0.00 0.00 33.71 4.79
104 105 1.079405 GTCCACGAAGATTGGCCGA 60.079 57.895 0.00 0.00 33.71 5.54
105 106 0.744414 ATGTCCACGAAGATTGGCCG 60.744 55.000 0.00 0.00 33.71 6.13
106 107 1.017387 GATGTCCACGAAGATTGGCC 58.983 55.000 0.00 0.00 33.71 5.36
107 108 0.652592 CGATGTCCACGAAGATTGGC 59.347 55.000 0.00 0.00 33.71 4.52
108 109 1.927174 GACGATGTCCACGAAGATTGG 59.073 52.381 0.00 0.00 35.18 3.16
109 110 1.583856 CGACGATGTCCACGAAGATTG 59.416 52.381 0.00 0.00 34.70 2.67
110 111 1.909376 CGACGATGTCCACGAAGATT 58.091 50.000 0.00 0.00 34.70 2.40
111 112 0.525668 GCGACGATGTCCACGAAGAT 60.526 55.000 0.00 0.00 34.70 2.40
112 113 1.154093 GCGACGATGTCCACGAAGA 60.154 57.895 0.00 0.00 34.70 2.87
113 114 1.406219 CTGCGACGATGTCCACGAAG 61.406 60.000 0.00 0.00 34.70 3.79
114 115 1.443702 CTGCGACGATGTCCACGAA 60.444 57.895 0.00 0.00 34.70 3.85
115 116 2.178273 CTGCGACGATGTCCACGA 59.822 61.111 0.00 0.00 34.70 4.35
116 117 3.545481 GCTGCGACGATGTCCACG 61.545 66.667 0.00 0.00 0.00 4.94
117 118 3.545481 CGCTGCGACGATGTCCAC 61.545 66.667 18.66 0.00 34.06 4.02
118 119 4.794439 CCGCTGCGACGATGTCCA 62.794 66.667 25.45 0.00 34.06 4.02
135 136 4.183686 ATGCAATGGAGCGTGCGC 62.184 61.111 8.67 8.67 43.93 6.09
136 137 2.023741 GATGCAATGGAGCGTGCG 59.976 61.111 0.00 0.00 43.93 5.34
137 138 1.354506 GAGATGCAATGGAGCGTGC 59.645 57.895 0.00 0.00 41.29 5.34
138 139 1.769098 CGGAGATGCAATGGAGCGTG 61.769 60.000 0.00 0.00 37.31 5.34
139 140 1.522355 CGGAGATGCAATGGAGCGT 60.522 57.895 0.00 0.00 37.31 5.07
140 141 2.249535 CCGGAGATGCAATGGAGCG 61.250 63.158 0.00 0.00 37.31 5.03
141 142 1.895707 CCCGGAGATGCAATGGAGC 60.896 63.158 0.73 0.00 0.00 4.70
142 143 1.895707 GCCCGGAGATGCAATGGAG 60.896 63.158 0.73 0.00 0.00 3.86
143 144 2.192979 GCCCGGAGATGCAATGGA 59.807 61.111 0.73 0.00 0.00 3.41
144 145 2.124193 TGCCCGGAGATGCAATGG 60.124 61.111 0.73 0.00 32.60 3.16
145 146 2.842256 GCTGCCCGGAGATGCAATG 61.842 63.158 0.73 0.00 34.95 2.82
146 147 2.517875 GCTGCCCGGAGATGCAAT 60.518 61.111 0.73 0.00 34.95 3.56
147 148 3.687321 GAGCTGCCCGGAGATGCAA 62.687 63.158 0.73 0.00 34.95 4.08
148 149 4.166888 GAGCTGCCCGGAGATGCA 62.167 66.667 0.73 2.17 34.27 3.96
204 205 4.840005 GGCTACAGACGGGCAGCC 62.840 72.222 1.26 1.26 46.21 4.85
205 206 4.840005 GGGCTACAGACGGGCAGC 62.840 72.222 0.00 0.00 0.00 5.25
206 207 2.954684 TTGGGCTACAGACGGGCAG 61.955 63.158 0.00 0.00 0.00 4.85
207 208 2.925706 TTGGGCTACAGACGGGCA 60.926 61.111 0.00 0.00 0.00 5.36
208 209 2.436115 GTTGGGCTACAGACGGGC 60.436 66.667 0.00 0.00 0.00 6.13
209 210 2.125673 CGTTGGGCTACAGACGGG 60.126 66.667 0.00 0.00 33.22 5.28
210 211 2.813908 GCGTTGGGCTACAGACGG 60.814 66.667 13.43 0.00 39.11 4.79
211 212 2.813908 GGCGTTGGGCTACAGACG 60.814 66.667 0.00 0.00 42.94 4.18
220 221 3.335356 ATCTGCTGGAGGCGTTGGG 62.335 63.158 0.00 0.00 45.43 4.12
221 222 2.110967 CATCTGCTGGAGGCGTTGG 61.111 63.158 0.00 0.00 45.43 3.77
222 223 0.463295 ATCATCTGCTGGAGGCGTTG 60.463 55.000 0.00 0.00 45.43 4.10
223 224 0.463295 CATCATCTGCTGGAGGCGTT 60.463 55.000 0.00 0.00 45.43 4.84
224 225 1.145598 CATCATCTGCTGGAGGCGT 59.854 57.895 0.00 0.00 45.43 5.68
225 226 1.597302 CCATCATCTGCTGGAGGCG 60.597 63.158 0.00 0.00 45.43 5.52
226 227 0.534652 GACCATCATCTGCTGGAGGC 60.535 60.000 7.05 0.00 42.22 4.70
227 228 0.249784 CGACCATCATCTGCTGGAGG 60.250 60.000 7.05 0.00 35.05 4.30
228 229 0.463204 ACGACCATCATCTGCTGGAG 59.537 55.000 7.05 3.62 35.05 3.86
229 230 1.775385 TACGACCATCATCTGCTGGA 58.225 50.000 7.05 0.00 35.05 3.86
230 231 2.298446 AGATACGACCATCATCTGCTGG 59.702 50.000 0.00 0.00 37.35 4.85
231 232 3.255395 AGAGATACGACCATCATCTGCTG 59.745 47.826 0.00 0.00 0.00 4.41
232 233 3.495331 AGAGATACGACCATCATCTGCT 58.505 45.455 0.00 0.00 0.00 4.24
233 234 3.254411 TGAGAGATACGACCATCATCTGC 59.746 47.826 0.00 0.00 0.00 4.26
234 235 4.276926 TGTGAGAGATACGACCATCATCTG 59.723 45.833 0.00 0.00 0.00 2.90
235 236 4.464947 TGTGAGAGATACGACCATCATCT 58.535 43.478 0.00 0.00 0.00 2.90
236 237 4.837896 TGTGAGAGATACGACCATCATC 57.162 45.455 0.00 0.00 0.00 2.92
237 238 4.402474 TGTTGTGAGAGATACGACCATCAT 59.598 41.667 0.00 0.00 32.58 2.45
238 239 3.761752 TGTTGTGAGAGATACGACCATCA 59.238 43.478 0.00 0.00 32.58 3.07
239 240 4.371855 TGTTGTGAGAGATACGACCATC 57.628 45.455 0.00 0.00 32.58 3.51
240 241 4.021456 TGTTGTTGTGAGAGATACGACCAT 60.021 41.667 0.00 0.00 32.58 3.55
241 242 3.319689 TGTTGTTGTGAGAGATACGACCA 59.680 43.478 0.00 0.00 32.58 4.02
242 243 3.909430 TGTTGTTGTGAGAGATACGACC 58.091 45.455 0.00 0.00 32.58 4.79
243 244 4.743151 TGTTGTTGTTGTGAGAGATACGAC 59.257 41.667 0.00 0.00 33.87 4.34
244 245 4.939271 TGTTGTTGTTGTGAGAGATACGA 58.061 39.130 0.00 0.00 0.00 3.43
245 246 4.745125 ACTGTTGTTGTTGTGAGAGATACG 59.255 41.667 0.00 0.00 0.00 3.06
246 247 6.128795 GCTACTGTTGTTGTTGTGAGAGATAC 60.129 42.308 0.00 0.00 0.00 2.24
247 248 5.926542 GCTACTGTTGTTGTTGTGAGAGATA 59.073 40.000 0.00 0.00 0.00 1.98
248 249 4.752101 GCTACTGTTGTTGTTGTGAGAGAT 59.248 41.667 0.00 0.00 0.00 2.75
249 250 4.119862 GCTACTGTTGTTGTTGTGAGAGA 58.880 43.478 0.00 0.00 0.00 3.10
250 251 3.060272 CGCTACTGTTGTTGTTGTGAGAG 60.060 47.826 0.00 0.00 0.00 3.20
251 252 2.863740 CGCTACTGTTGTTGTTGTGAGA 59.136 45.455 0.00 0.00 0.00 3.27
252 253 2.863740 TCGCTACTGTTGTTGTTGTGAG 59.136 45.455 0.00 0.00 0.00 3.51
253 254 2.605818 GTCGCTACTGTTGTTGTTGTGA 59.394 45.455 0.00 0.00 0.00 3.58
254 255 2.350192 TGTCGCTACTGTTGTTGTTGTG 59.650 45.455 0.00 0.00 0.00 3.33
255 256 2.607635 CTGTCGCTACTGTTGTTGTTGT 59.392 45.455 0.00 0.00 0.00 3.32
256 257 2.863740 TCTGTCGCTACTGTTGTTGTTG 59.136 45.455 0.00 0.00 0.00 3.33
257 258 3.123804 CTCTGTCGCTACTGTTGTTGTT 58.876 45.455 0.00 0.00 0.00 2.83
258 259 2.361119 TCTCTGTCGCTACTGTTGTTGT 59.639 45.455 0.00 0.00 0.00 3.32
259 260 3.013276 TCTCTGTCGCTACTGTTGTTG 57.987 47.619 0.00 0.00 0.00 3.33
260 261 3.728076 TTCTCTGTCGCTACTGTTGTT 57.272 42.857 0.00 0.00 0.00 2.83
261 262 3.728076 TTTCTCTGTCGCTACTGTTGT 57.272 42.857 0.00 0.00 0.00 3.32
262 263 3.430218 CCTTTTCTCTGTCGCTACTGTTG 59.570 47.826 0.00 0.00 0.00 3.33
263 264 3.321111 TCCTTTTCTCTGTCGCTACTGTT 59.679 43.478 0.00 0.00 0.00 3.16
264 265 2.891580 TCCTTTTCTCTGTCGCTACTGT 59.108 45.455 0.00 0.00 0.00 3.55
265 266 3.191581 TCTCCTTTTCTCTGTCGCTACTG 59.808 47.826 0.00 0.00 0.00 2.74
266 267 3.422796 TCTCCTTTTCTCTGTCGCTACT 58.577 45.455 0.00 0.00 0.00 2.57
267 268 3.851976 TCTCCTTTTCTCTGTCGCTAC 57.148 47.619 0.00 0.00 0.00 3.58
268 269 3.367498 GCTTCTCCTTTTCTCTGTCGCTA 60.367 47.826 0.00 0.00 0.00 4.26
269 270 2.611722 GCTTCTCCTTTTCTCTGTCGCT 60.612 50.000 0.00 0.00 0.00 4.93
270 271 1.729517 GCTTCTCCTTTTCTCTGTCGC 59.270 52.381 0.00 0.00 0.00 5.19
271 272 3.032017 TGCTTCTCCTTTTCTCTGTCG 57.968 47.619 0.00 0.00 0.00 4.35
272 273 4.322567 ACATGCTTCTCCTTTTCTCTGTC 58.677 43.478 0.00 0.00 0.00 3.51
273 274 4.322567 GACATGCTTCTCCTTTTCTCTGT 58.677 43.478 0.00 0.00 0.00 3.41
274 275 3.688673 GGACATGCTTCTCCTTTTCTCTG 59.311 47.826 0.00 0.00 0.00 3.35
275 276 3.328931 TGGACATGCTTCTCCTTTTCTCT 59.671 43.478 0.00 0.00 0.00 3.10
276 277 3.679389 TGGACATGCTTCTCCTTTTCTC 58.321 45.455 0.00 0.00 0.00 2.87
277 278 3.795688 TGGACATGCTTCTCCTTTTCT 57.204 42.857 0.00 0.00 0.00 2.52
278 279 3.129988 CCATGGACATGCTTCTCCTTTTC 59.870 47.826 5.56 0.00 37.49 2.29
279 280 3.094572 CCATGGACATGCTTCTCCTTTT 58.905 45.455 5.56 0.00 37.49 2.27
280 281 2.731572 CCATGGACATGCTTCTCCTTT 58.268 47.619 5.56 0.00 37.49 3.11
281 282 1.684248 GCCATGGACATGCTTCTCCTT 60.684 52.381 18.40 0.00 37.49 3.36
282 283 0.106819 GCCATGGACATGCTTCTCCT 60.107 55.000 18.40 0.00 37.49 3.69
283 284 1.442526 CGCCATGGACATGCTTCTCC 61.443 60.000 18.40 0.00 37.49 3.71
284 285 0.462581 TCGCCATGGACATGCTTCTC 60.463 55.000 18.40 0.00 37.49 2.87
285 286 0.463295 CTCGCCATGGACATGCTTCT 60.463 55.000 18.40 0.00 37.49 2.85
286 287 1.442526 CCTCGCCATGGACATGCTTC 61.443 60.000 18.40 0.00 37.49 3.86
287 288 1.452651 CCTCGCCATGGACATGCTT 60.453 57.895 18.40 0.00 37.49 3.91
288 289 2.191375 CCTCGCCATGGACATGCT 59.809 61.111 18.40 0.00 37.49 3.79
289 290 1.890979 CTCCTCGCCATGGACATGC 60.891 63.158 18.40 0.00 37.49 4.06
290 291 1.890979 GCTCCTCGCCATGGACATG 60.891 63.158 18.40 5.33 38.51 3.21
291 292 2.321263 CTGCTCCTCGCCATGGACAT 62.321 60.000 18.40 0.00 38.05 3.06
292 293 3.002583 TGCTCCTCGCCATGGACA 61.003 61.111 18.40 0.00 38.05 4.02
293 294 2.202987 CTGCTCCTCGCCATGGAC 60.203 66.667 18.40 5.97 38.05 4.02
294 295 4.166888 GCTGCTCCTCGCCATGGA 62.167 66.667 18.40 0.00 38.05 3.41
295 296 4.478371 TGCTGCTCCTCGCCATGG 62.478 66.667 7.63 7.63 38.05 3.66
296 297 2.895865 CTGCTGCTCCTCGCCATG 60.896 66.667 0.00 0.00 38.05 3.66
297 298 4.172512 CCTGCTGCTCCTCGCCAT 62.173 66.667 0.00 0.00 38.05 4.40
299 300 4.527583 CTCCTGCTGCTCCTCGCC 62.528 72.222 0.00 0.00 38.05 5.54
300 301 3.429080 CTCTCCTGCTGCTCCTCGC 62.429 68.421 0.00 0.00 39.77 5.03
301 302 1.727511 CTCTCTCCTGCTGCTCCTCG 61.728 65.000 0.00 0.00 0.00 4.63
302 303 1.394266 CCTCTCTCCTGCTGCTCCTC 61.394 65.000 0.00 0.00 0.00 3.71
303 304 1.381599 CCTCTCTCCTGCTGCTCCT 60.382 63.158 0.00 0.00 0.00 3.69
304 305 0.975040 TTCCTCTCTCCTGCTGCTCC 60.975 60.000 0.00 0.00 0.00 4.70
305 306 0.175531 GTTCCTCTCTCCTGCTGCTC 59.824 60.000 0.00 0.00 0.00 4.26
306 307 1.603236 CGTTCCTCTCTCCTGCTGCT 61.603 60.000 0.00 0.00 0.00 4.24
307 308 1.153667 CGTTCCTCTCTCCTGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
308 309 1.110442 ATCGTTCCTCTCTCCTGCTG 58.890 55.000 0.00 0.00 0.00 4.41
309 310 1.110442 CATCGTTCCTCTCTCCTGCT 58.890 55.000 0.00 0.00 0.00 4.24
310 311 0.103937 CCATCGTTCCTCTCTCCTGC 59.896 60.000 0.00 0.00 0.00 4.85
311 312 1.680735 CTCCATCGTTCCTCTCTCCTG 59.319 57.143 0.00 0.00 0.00 3.86
312 313 1.566703 TCTCCATCGTTCCTCTCTCCT 59.433 52.381 0.00 0.00 0.00 3.69
313 314 1.679153 GTCTCCATCGTTCCTCTCTCC 59.321 57.143 0.00 0.00 0.00 3.71
314 315 1.332375 CGTCTCCATCGTTCCTCTCTC 59.668 57.143 0.00 0.00 0.00 3.20
315 316 1.065345 TCGTCTCCATCGTTCCTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
316 317 1.380524 TCGTCTCCATCGTTCCTCTC 58.619 55.000 0.00 0.00 0.00 3.20
317 318 1.746220 CTTCGTCTCCATCGTTCCTCT 59.254 52.381 0.00 0.00 0.00 3.69
318 319 1.202313 CCTTCGTCTCCATCGTTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
319 320 0.818296 CCTTCGTCTCCATCGTTCCT 59.182 55.000 0.00 0.00 0.00 3.36
320 321 0.179108 CCCTTCGTCTCCATCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
321 322 0.179108 CCCCTTCGTCTCCATCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
322 323 0.613853 TCCCCTTCGTCTCCATCGTT 60.614 55.000 0.00 0.00 0.00 3.85
323 324 0.397254 ATCCCCTTCGTCTCCATCGT 60.397 55.000 0.00 0.00 0.00 3.73
324 325 0.315568 GATCCCCTTCGTCTCCATCG 59.684 60.000 0.00 0.00 0.00 3.84
325 326 1.342819 CAGATCCCCTTCGTCTCCATC 59.657 57.143 0.00 0.00 0.00 3.51
326 327 1.418334 CAGATCCCCTTCGTCTCCAT 58.582 55.000 0.00 0.00 0.00 3.41
327 328 0.687757 CCAGATCCCCTTCGTCTCCA 60.688 60.000 0.00 0.00 0.00 3.86
328 329 0.397254 TCCAGATCCCCTTCGTCTCC 60.397 60.000 0.00 0.00 0.00 3.71
329 330 1.036707 CTCCAGATCCCCTTCGTCTC 58.963 60.000 0.00 0.00 0.00 3.36
330 331 0.631753 TCTCCAGATCCCCTTCGTCT 59.368 55.000 0.00 0.00 0.00 4.18
331 332 1.486211 TTCTCCAGATCCCCTTCGTC 58.514 55.000 0.00 0.00 0.00 4.20
332 333 1.952621 TTTCTCCAGATCCCCTTCGT 58.047 50.000 0.00 0.00 0.00 3.85
333 334 2.501723 TCTTTTCTCCAGATCCCCTTCG 59.498 50.000 0.00 0.00 0.00 3.79
334 335 3.777522 TCTCTTTTCTCCAGATCCCCTTC 59.222 47.826 0.00 0.00 0.00 3.46
335 336 3.808189 TCTCTTTTCTCCAGATCCCCTT 58.192 45.455 0.00 0.00 0.00 3.95
336 337 3.498614 TCTCTTTTCTCCAGATCCCCT 57.501 47.619 0.00 0.00 0.00 4.79
337 338 5.221823 CCTTATCTCTTTTCTCCAGATCCCC 60.222 48.000 0.00 0.00 0.00 4.81
338 339 5.604650 TCCTTATCTCTTTTCTCCAGATCCC 59.395 44.000 0.00 0.00 0.00 3.85
339 340 6.739331 TCCTTATCTCTTTTCTCCAGATCC 57.261 41.667 0.00 0.00 0.00 3.36
340 341 7.661027 CCATTCCTTATCTCTTTTCTCCAGATC 59.339 40.741 0.00 0.00 0.00 2.75
341 342 7.421147 CCCATTCCTTATCTCTTTTCTCCAGAT 60.421 40.741 0.00 0.00 0.00 2.90
342 343 6.126652 CCCATTCCTTATCTCTTTTCTCCAGA 60.127 42.308 0.00 0.00 0.00 3.86
343 344 6.060788 CCCATTCCTTATCTCTTTTCTCCAG 58.939 44.000 0.00 0.00 0.00 3.86
344 345 5.492524 ACCCATTCCTTATCTCTTTTCTCCA 59.507 40.000 0.00 0.00 0.00 3.86
345 346 5.825151 CACCCATTCCTTATCTCTTTTCTCC 59.175 44.000 0.00 0.00 0.00 3.71
346 347 5.825151 CCACCCATTCCTTATCTCTTTTCTC 59.175 44.000 0.00 0.00 0.00 2.87
347 348 5.254032 ACCACCCATTCCTTATCTCTTTTCT 59.746 40.000 0.00 0.00 0.00 2.52
348 349 5.510430 ACCACCCATTCCTTATCTCTTTTC 58.490 41.667 0.00 0.00 0.00 2.29
349 350 5.536497 ACCACCCATTCCTTATCTCTTTT 57.464 39.130 0.00 0.00 0.00 2.27
350 351 5.536497 AACCACCCATTCCTTATCTCTTT 57.464 39.130 0.00 0.00 0.00 2.52
351 352 5.015178 TGAAACCACCCATTCCTTATCTCTT 59.985 40.000 0.00 0.00 0.00 2.85
352 353 4.540099 TGAAACCACCCATTCCTTATCTCT 59.460 41.667 0.00 0.00 0.00 3.10
353 354 4.640647 GTGAAACCACCCATTCCTTATCTC 59.359 45.833 0.00 0.00 0.00 2.75
354 355 4.600062 GTGAAACCACCCATTCCTTATCT 58.400 43.478 0.00 0.00 0.00 1.98
355 356 3.377172 CGTGAAACCACCCATTCCTTATC 59.623 47.826 0.00 0.00 0.00 1.75
356 357 3.245122 ACGTGAAACCACCCATTCCTTAT 60.245 43.478 0.00 0.00 0.00 1.73
357 358 2.106857 ACGTGAAACCACCCATTCCTTA 59.893 45.455 0.00 0.00 0.00 2.69
358 359 1.133606 ACGTGAAACCACCCATTCCTT 60.134 47.619 0.00 0.00 0.00 3.36
359 360 0.476771 ACGTGAAACCACCCATTCCT 59.523 50.000 0.00 0.00 0.00 3.36
360 361 0.596082 CACGTGAAACCACCCATTCC 59.404 55.000 10.90 0.00 0.00 3.01
361 362 0.039527 GCACGTGAAACCACCCATTC 60.040 55.000 22.23 0.00 0.00 2.67
362 363 1.791103 CGCACGTGAAACCACCCATT 61.791 55.000 22.23 0.00 0.00 3.16
363 364 2.258013 CGCACGTGAAACCACCCAT 61.258 57.895 22.23 0.00 0.00 4.00
364 365 2.897846 CGCACGTGAAACCACCCA 60.898 61.111 22.23 0.00 0.00 4.51
365 366 4.322385 GCGCACGTGAAACCACCC 62.322 66.667 22.23 0.00 0.00 4.61
366 367 4.322385 GGCGCACGTGAAACCACC 62.322 66.667 22.23 6.46 0.00 4.61
367 368 3.578272 TGGCGCACGTGAAACCAC 61.578 61.111 22.23 0.00 0.00 4.16
368 369 3.578272 GTGGCGCACGTGAAACCA 61.578 61.111 22.23 19.36 0.00 3.67
369 370 4.322385 GGTGGCGCACGTGAAACC 62.322 66.667 22.23 16.86 34.83 3.27
370 371 4.659874 CGGTGGCGCACGTGAAAC 62.660 66.667 22.23 10.57 34.83 2.78
376 377 3.709880 TTATCTCCGGTGGCGCACG 62.710 63.158 10.83 10.80 34.83 5.34
377 378 1.883084 CTTATCTCCGGTGGCGCAC 60.883 63.158 10.83 5.50 0.00 5.34
378 379 2.499205 CTTATCTCCGGTGGCGCA 59.501 61.111 10.83 0.00 0.00 6.09
379 380 2.100879 ATCCTTATCTCCGGTGGCGC 62.101 60.000 0.00 0.00 0.00 6.53
380 381 0.319900 CATCCTTATCTCCGGTGGCG 60.320 60.000 0.00 0.00 0.00 5.69
381 382 0.035458 CCATCCTTATCTCCGGTGGC 59.965 60.000 0.00 0.00 0.00 5.01
382 383 0.687354 CCCATCCTTATCTCCGGTGG 59.313 60.000 0.00 0.00 0.00 4.61
383 384 0.687354 CCCCATCCTTATCTCCGGTG 59.313 60.000 0.00 0.00 0.00 4.94
384 385 0.267960 ACCCCATCCTTATCTCCGGT 59.732 55.000 0.00 0.00 0.00 5.28
385 386 0.687354 CACCCCATCCTTATCTCCGG 59.313 60.000 0.00 0.00 0.00 5.14
386 387 0.687354 CCACCCCATCCTTATCTCCG 59.313 60.000 0.00 0.00 0.00 4.63
387 388 1.700186 GACCACCCCATCCTTATCTCC 59.300 57.143 0.00 0.00 0.00 3.71
388 389 1.700186 GGACCACCCCATCCTTATCTC 59.300 57.143 0.00 0.00 31.75 2.75
389 390 1.821088 GGACCACCCCATCCTTATCT 58.179 55.000 0.00 0.00 31.75 1.98
390 391 0.396811 CGGACCACCCCATCCTTATC 59.603 60.000 0.00 0.00 32.33 1.75
391 392 1.705997 GCGGACCACCCCATCCTTAT 61.706 60.000 0.00 0.00 32.33 1.73
392 393 2.372074 GCGGACCACCCCATCCTTA 61.372 63.158 0.00 0.00 32.33 2.69
393 394 3.728373 GCGGACCACCCCATCCTT 61.728 66.667 0.00 0.00 32.33 3.36
395 396 4.489771 CTGCGGACCACCCCATCC 62.490 72.222 0.00 0.00 0.00 3.51
396 397 4.489771 CCTGCGGACCACCCCATC 62.490 72.222 0.00 0.00 0.00 3.51
415 416 2.305607 TATGTGAGGCCCACCCACC 61.306 63.158 18.24 0.00 45.09 4.61
416 417 1.077716 GTATGTGAGGCCCACCCAC 60.078 63.158 18.24 13.14 45.09 4.61
417 418 1.540118 TGTATGTGAGGCCCACCCA 60.540 57.895 18.24 11.20 45.09 4.51
418 419 1.077716 GTGTATGTGAGGCCCACCC 60.078 63.158 18.24 9.27 45.09 4.61
419 420 1.449601 CGTGTATGTGAGGCCCACC 60.450 63.158 18.24 6.92 45.09 4.61
420 421 1.019278 CACGTGTATGTGAGGCCCAC 61.019 60.000 7.58 15.24 42.55 4.61
421 422 1.295101 CACGTGTATGTGAGGCCCA 59.705 57.895 7.58 0.00 42.55 5.36
422 423 1.449601 CCACGTGTATGTGAGGCCC 60.450 63.158 15.65 0.00 42.55 5.80
423 424 2.106683 GCCACGTGTATGTGAGGCC 61.107 63.158 15.65 0.00 42.55 5.19
424 425 2.452813 CGCCACGTGTATGTGAGGC 61.453 63.158 15.65 7.02 42.55 4.70
425 426 0.802222 CTCGCCACGTGTATGTGAGG 60.802 60.000 19.86 3.42 42.55 3.86
426 427 1.413767 GCTCGCCACGTGTATGTGAG 61.414 60.000 22.03 22.03 42.55 3.51
427 428 1.445410 GCTCGCCACGTGTATGTGA 60.445 57.895 15.65 10.33 42.55 3.58
428 429 1.083806 ATGCTCGCCACGTGTATGTG 61.084 55.000 15.65 6.15 39.60 3.21
429 430 0.458260 TATGCTCGCCACGTGTATGT 59.542 50.000 15.65 0.00 29.93 2.29
430 431 1.131771 CTATGCTCGCCACGTGTATG 58.868 55.000 15.65 3.62 29.93 2.39
431 432 0.597637 GCTATGCTCGCCACGTGTAT 60.598 55.000 15.65 0.00 31.73 2.29
432 433 1.226859 GCTATGCTCGCCACGTGTA 60.227 57.895 15.65 0.00 0.00 2.90
433 434 2.509336 GCTATGCTCGCCACGTGT 60.509 61.111 15.65 0.00 0.00 4.49
434 435 3.620428 CGCTATGCTCGCCACGTG 61.620 66.667 9.08 9.08 0.00 4.49
442 443 1.601147 CTAAGTCGCGCGCTATGCTC 61.601 60.000 30.48 12.13 43.27 4.26
443 444 1.658717 CTAAGTCGCGCGCTATGCT 60.659 57.895 30.48 17.62 43.27 3.79
444 445 2.840016 CTAAGTCGCGCGCTATGC 59.160 61.111 30.48 15.59 41.47 3.14
445 446 1.479420 TTGCTAAGTCGCGCGCTATG 61.479 55.000 30.48 19.96 0.00 2.23
446 447 1.209275 CTTGCTAAGTCGCGCGCTAT 61.209 55.000 30.48 15.52 0.00 2.97
447 448 1.872234 CTTGCTAAGTCGCGCGCTA 60.872 57.895 30.48 17.01 0.00 4.26
448 449 3.181967 CTTGCTAAGTCGCGCGCT 61.182 61.111 30.48 22.53 0.00 5.92
449 450 4.852882 GCTTGCTAAGTCGCGCGC 62.853 66.667 27.95 23.91 0.00 6.86
450 451 3.181967 AGCTTGCTAAGTCGCGCG 61.182 61.111 26.76 26.76 0.00 6.86
451 452 2.383527 ACAGCTTGCTAAGTCGCGC 61.384 57.895 0.00 0.00 0.00 6.86
452 453 1.008875 TCACAGCTTGCTAAGTCGCG 61.009 55.000 0.00 0.00 0.00 5.87
453 454 1.148310 TTCACAGCTTGCTAAGTCGC 58.852 50.000 0.00 0.00 0.00 5.19
454 455 3.433274 TGATTTCACAGCTTGCTAAGTCG 59.567 43.478 0.00 0.00 0.00 4.18
455 456 4.967437 CTGATTTCACAGCTTGCTAAGTC 58.033 43.478 0.00 0.00 0.00 3.01
466 467 1.522668 TCAACCGGCTGATTTCACAG 58.477 50.000 2.67 0.00 40.43 3.66
467 468 1.974265 TTCAACCGGCTGATTTCACA 58.026 45.000 8.68 0.00 0.00 3.58
468 469 2.661594 GTTTCAACCGGCTGATTTCAC 58.338 47.619 8.68 0.19 0.00 3.18
469 470 1.265635 CGTTTCAACCGGCTGATTTCA 59.734 47.619 8.68 0.00 0.00 2.69
470 471 1.533731 TCGTTTCAACCGGCTGATTTC 59.466 47.619 8.68 1.80 0.00 2.17
471 472 1.600023 TCGTTTCAACCGGCTGATTT 58.400 45.000 8.68 0.00 0.00 2.17
472 473 1.265905 GTTCGTTTCAACCGGCTGATT 59.734 47.619 8.68 0.00 0.00 2.57
473 474 0.872388 GTTCGTTTCAACCGGCTGAT 59.128 50.000 8.68 0.00 0.00 2.90
474 475 0.462225 TGTTCGTTTCAACCGGCTGA 60.462 50.000 2.67 2.67 0.00 4.26
475 476 0.316689 GTGTTCGTTTCAACCGGCTG 60.317 55.000 0.00 0.00 0.00 4.85
476 477 0.463116 AGTGTTCGTTTCAACCGGCT 60.463 50.000 0.00 0.00 0.00 5.52
477 478 0.379316 AAGTGTTCGTTTCAACCGGC 59.621 50.000 0.00 0.00 0.00 6.13
478 479 2.836479 AAAGTGTTCGTTTCAACCGG 57.164 45.000 0.00 0.00 0.00 5.28
479 480 3.103007 GGAAAAGTGTTCGTTTCAACCG 58.897 45.455 8.32 0.00 41.41 4.44
480 481 4.365899 AGGAAAAGTGTTCGTTTCAACC 57.634 40.909 8.32 0.00 41.41 3.77
481 482 6.521898 CAAAAGGAAAAGTGTTCGTTTCAAC 58.478 36.000 12.85 0.00 41.41 3.18
482 483 5.119434 GCAAAAGGAAAAGTGTTCGTTTCAA 59.881 36.000 12.85 0.00 41.41 2.69
483 484 4.623595 GCAAAAGGAAAAGTGTTCGTTTCA 59.376 37.500 12.85 0.00 41.41 2.69
484 485 4.623595 TGCAAAAGGAAAAGTGTTCGTTTC 59.376 37.500 12.85 4.25 39.85 2.78
485 486 4.387559 GTGCAAAAGGAAAAGTGTTCGTTT 59.612 37.500 7.73 7.73 37.90 3.60
486 487 3.924073 GTGCAAAAGGAAAAGTGTTCGTT 59.076 39.130 0.00 0.00 0.00 3.85
487 488 3.057174 TGTGCAAAAGGAAAAGTGTTCGT 60.057 39.130 0.00 0.00 0.00 3.85
488 489 3.506810 TGTGCAAAAGGAAAAGTGTTCG 58.493 40.909 0.00 0.00 0.00 3.95
489 490 5.617609 GTTTGTGCAAAAGGAAAAGTGTTC 58.382 37.500 0.00 0.00 31.33 3.18
490 491 4.151512 CGTTTGTGCAAAAGGAAAAGTGTT 59.848 37.500 0.00 0.00 31.33 3.32
491 492 3.677596 CGTTTGTGCAAAAGGAAAAGTGT 59.322 39.130 0.00 0.00 31.33 3.55
492 493 3.677596 ACGTTTGTGCAAAAGGAAAAGTG 59.322 39.130 15.84 0.00 34.77 3.16
493 494 3.677596 CACGTTTGTGCAAAAGGAAAAGT 59.322 39.130 15.84 5.59 39.67 2.66
494 495 4.243642 CACGTTTGTGCAAAAGGAAAAG 57.756 40.909 15.84 5.12 39.67 2.27
522 523 6.925718 TGCAAATCACAATATTTCCAAACGAA 59.074 30.769 0.00 0.00 0.00 3.85
528 529 6.107343 CACCATGCAAATCACAATATTTCCA 58.893 36.000 0.00 0.00 0.00 3.53
529 530 6.108015 ACACCATGCAAATCACAATATTTCC 58.892 36.000 0.00 0.00 0.00 3.13
530 531 7.044117 CGTACACCATGCAAATCACAATATTTC 60.044 37.037 0.00 0.00 0.00 2.17
556 557 7.433680 TCCTAGCCAGATTTTTGTTTTTCTTC 58.566 34.615 0.00 0.00 0.00 2.87
570 571 2.593026 GTCTACAGCTCCTAGCCAGAT 58.407 52.381 0.00 0.00 43.77 2.90
590 591 0.390340 TGCAGCTCCTAGCAAGAACG 60.390 55.000 1.22 0.00 45.56 3.95
597 598 4.046276 GCTCATGCAGCTCCTAGC 57.954 61.111 9.16 0.00 45.83 3.42
652 657 1.296715 CTTGGTTCTAGGCCGTGCT 59.703 57.895 0.00 0.00 0.00 4.40
680 695 1.454201 GGAAGTAGAGCCTTGCCAAC 58.546 55.000 0.00 0.00 0.00 3.77
736 751 3.496131 GTACGGTCGGTCGCGGTA 61.496 66.667 6.13 0.00 0.00 4.02
780 795 2.732844 AGTAGGAGTAGTAAGCGCCT 57.267 50.000 2.29 0.00 39.44 5.52
791 806 6.012157 TCCACCAACTAACTACTAGTAGGAGT 60.012 42.308 29.05 26.20 40.14 3.85
792 807 6.318396 GTCCACCAACTAACTACTAGTAGGAG 59.682 46.154 29.05 25.66 40.14 3.69
794 809 5.359292 GGTCCACCAACTAACTACTAGTAGG 59.641 48.000 29.05 16.46 40.14 3.18
795 810 6.095160 CAGGTCCACCAACTAACTACTAGTAG 59.905 46.154 25.30 25.30 40.14 2.57
797 812 4.771054 CAGGTCCACCAACTAACTACTAGT 59.229 45.833 0.00 0.00 43.06 2.57
798 813 4.771054 ACAGGTCCACCAACTAACTACTAG 59.229 45.833 0.00 0.00 38.89 2.57
800 815 3.584294 ACAGGTCCACCAACTAACTACT 58.416 45.455 0.00 0.00 38.89 2.57
801 816 4.062991 CAACAGGTCCACCAACTAACTAC 58.937 47.826 0.00 0.00 38.89 2.73
802 817 3.495453 GCAACAGGTCCACCAACTAACTA 60.495 47.826 0.00 0.00 38.89 2.24
803 818 2.748465 GCAACAGGTCCACCAACTAACT 60.748 50.000 0.00 0.00 38.89 2.24
905 938 1.746615 CCGTCGGTCCGAGTAAGGA 60.747 63.158 15.95 0.00 36.23 3.36
907 940 1.427020 GTCCGTCGGTCCGAGTAAG 59.573 63.158 15.95 6.61 36.23 2.34
908 941 2.040544 GGTCCGTCGGTCCGAGTAA 61.041 63.158 15.95 0.00 36.23 2.24
909 942 2.436646 GGTCCGTCGGTCCGAGTA 60.437 66.667 15.95 0.00 36.23 2.59
937 973 9.267084 GAGACTTATGGAAGAGGAATTGAATAC 57.733 37.037 0.00 0.00 36.45 1.89
1113 1158 3.295228 CTCAGCGCCGTTTTCACCG 62.295 63.158 2.29 0.00 0.00 4.94
1430 1619 2.389962 TCGAAATCCCCGTCGAAAAT 57.610 45.000 0.00 0.00 42.92 1.82
1438 1627 2.158871 TCCCACTAAATCGAAATCCCCG 60.159 50.000 0.00 0.00 0.00 5.73
1446 1635 2.739913 CAGCGTTTTCCCACTAAATCGA 59.260 45.455 0.00 0.00 34.87 3.59
1617 1806 5.120674 GCTTGCAAACTAAAATTGACATCCC 59.879 40.000 0.00 0.00 0.00 3.85
1827 2017 1.064825 CTTATACTCCCCCGCCCAAT 58.935 55.000 0.00 0.00 0.00 3.16
1879 2070 3.928992 CGTTGCATATCACTTGTCAGTCT 59.071 43.478 0.00 0.00 0.00 3.24
1937 2130 5.368523 TCCCTCCGTTCACCATTATAAGATT 59.631 40.000 0.00 0.00 0.00 2.40
1948 2141 1.192428 ATGTACTCCCTCCGTTCACC 58.808 55.000 0.00 0.00 0.00 4.02
2233 2431 3.422217 CGTATTCAGGAACATCACGATCG 59.578 47.826 14.88 14.88 0.00 3.69
2310 2508 7.976734 AGAGTAATCATGACTGCTAGTTAACAC 59.023 37.037 8.61 0.00 0.00 3.32
2459 2660 6.446318 CAGCTTTTTAACAGCAACCAGAATA 58.554 36.000 5.88 0.00 39.99 1.75
2778 2979 3.616956 TGAGCCTGGAAAGTACATCAG 57.383 47.619 0.00 0.00 0.00 2.90
2785 2986 8.773033 ATCAAAATAATATGAGCCTGGAAAGT 57.227 30.769 0.00 0.00 0.00 2.66
2820 3021 7.070821 GGTGGTTAATTATGAAGAGACTAGGGA 59.929 40.741 0.00 0.00 0.00 4.20
2822 3023 7.792032 TGGTGGTTAATTATGAAGAGACTAGG 58.208 38.462 0.00 0.00 0.00 3.02
2831 3032 8.143193 GCATCAATGATGGTGGTTAATTATGAA 58.857 33.333 22.95 0.00 40.10 2.57
2834 3035 6.014327 GGGCATCAATGATGGTGGTTAATTAT 60.014 38.462 22.95 0.00 40.10 1.28
2839 3049 2.244510 AGGGCATCAATGATGGTGGTTA 59.755 45.455 22.95 0.00 40.10 2.85
2849 3059 5.649782 AAAGTTTGACTAGGGCATCAATG 57.350 39.130 0.00 0.00 34.87 2.82
2851 3061 5.385198 AGAAAAGTTTGACTAGGGCATCAA 58.615 37.500 0.00 0.00 33.03 2.57
2852 3062 4.985538 AGAAAAGTTTGACTAGGGCATCA 58.014 39.130 0.00 0.00 0.00 3.07
2881 3091 0.875059 CAAAAGGAAGCCGTGAGTCC 59.125 55.000 0.00 0.00 0.00 3.85
2913 3123 7.550906 GCACTCCTTCACTCACTAGAAAATAAT 59.449 37.037 0.00 0.00 0.00 1.28
3052 3269 5.162794 GCAATGTTGAAATCATACAGCACA 58.837 37.500 0.00 0.00 31.01 4.57
3176 3394 5.931724 CACCCTGAAAATAAACATTTCCACC 59.068 40.000 0.00 0.00 36.23 4.61
3351 3569 4.592485 AAGATCCACGAGTTAGGCATAG 57.408 45.455 0.00 0.00 0.00 2.23
3379 3597 9.654663 GTAAGTAACTCATTCCTCTGTTACATT 57.345 33.333 14.49 9.52 43.96 2.71
3472 3690 9.918630 CAGAAGACTTCAAATTTATGGATGTTT 57.081 29.630 17.34 0.00 0.00 2.83
3591 3816 0.523072 CTGCCACCTTCAAATGTCCG 59.477 55.000 0.00 0.00 0.00 4.79
3594 3819 4.344679 TCAAAATCTGCCACCTTCAAATGT 59.655 37.500 0.00 0.00 0.00 2.71
3598 3823 5.163322 ACAAATCAAAATCTGCCACCTTCAA 60.163 36.000 0.00 0.00 0.00 2.69
3710 3935 6.684897 TGGAACAAATTCAGGATGGAAAAT 57.315 33.333 0.00 0.00 36.46 1.82
3722 3947 5.634859 CTGCATACCAGTTTGGAACAAATTC 59.365 40.000 1.40 0.00 40.96 2.17
4036 4263 4.101114 TGGGAGTAGTTGGAGCAGAATTA 58.899 43.478 0.00 0.00 0.00 1.40
4216 4444 4.896482 GGAGAATCTTACTCTCTTAGCCCA 59.104 45.833 0.00 0.00 39.48 5.36
4260 4498 3.747529 GCTGCAACAAATTGGTAATTGCT 59.252 39.130 16.32 0.00 44.69 3.91
4356 4594 9.070179 GGAGGAAACAGTACAAATTAAGGTTTA 57.930 33.333 0.00 0.00 0.00 2.01
4393 4631 3.054878 ACAAACTAAAGTCACCGCGTAG 58.945 45.455 4.92 0.16 0.00 3.51
4427 4665 3.817647 AGTCAAGCAATCAAGTCAGGAAC 59.182 43.478 0.00 0.00 0.00 3.62
4429 4667 3.777106 AGTCAAGCAATCAAGTCAGGA 57.223 42.857 0.00 0.00 0.00 3.86
4457 4695 7.231317 AGCATTTCTCAATCAACCTGTAGAAAA 59.769 33.333 0.00 0.00 36.76 2.29
4594 4832 9.694137 ACTTATTAGAACGCTATTCCATAAGAC 57.306 33.333 20.53 0.00 32.25 3.01
4610 4848 8.780846 TTTTGCTACGATGGAACTTATTAGAA 57.219 30.769 0.00 0.00 0.00 2.10
4658 4896 5.692115 TCCAGTATAGCCAACATGAGAAA 57.308 39.130 0.00 0.00 0.00 2.52
4667 4905 3.329520 ACCTGTTGTTCCAGTATAGCCAA 59.670 43.478 0.00 0.00 0.00 4.52
4729 4967 2.687935 GCCCTCATTGCGATCCTTTTTA 59.312 45.455 0.00 0.00 0.00 1.52
5087 5328 8.239314 TCAGAAAGATTGATAACATGAGCAAAC 58.761 33.333 0.00 0.00 0.00 2.93
5092 5333 7.468357 GCCCTTCAGAAAGATTGATAACATGAG 60.468 40.741 0.00 0.00 34.14 2.90
5126 5373 2.052157 GTCACGTGCAGTCTTCAGTAC 58.948 52.381 11.67 0.00 0.00 2.73
5188 5435 2.751259 CCTGTTTCATGGGATGACAGTG 59.249 50.000 0.00 0.00 39.39 3.66
5210 5457 1.453155 AACTGTGAAGCGGGCAATAG 58.547 50.000 0.00 0.00 0.00 1.73
5249 5496 3.924013 ATGCAGAGGTCGGGGTCCA 62.924 63.158 0.00 0.00 0.00 4.02
5258 5506 2.068821 ATCGCCCAGATGCAGAGGT 61.069 57.895 0.00 0.00 38.36 3.85
5272 5520 2.552585 AAAGTGGCTGCATGCATCGC 62.553 55.000 22.97 21.54 45.15 4.58
5322 5570 7.520937 CGGTGGCTTTAGTTTTACTGTTGTATT 60.521 37.037 0.00 0.00 0.00 1.89
5378 5626 9.326489 AGACTATTAGCATCCCTACATCAATTA 57.674 33.333 0.00 0.00 0.00 1.40
5406 5654 4.767409 TGCGAGTCTGTATGATATTAGGCT 59.233 41.667 0.00 0.00 0.00 4.58
5415 5663 0.894835 TTGGCTGCGAGTCTGTATGA 59.105 50.000 0.00 0.00 0.00 2.15
5418 5666 0.320421 GGTTTGGCTGCGAGTCTGTA 60.320 55.000 0.00 0.00 0.00 2.74
5618 5867 0.248743 GTTGTCTGACGTCGTGGTGA 60.249 55.000 11.62 1.23 0.00 4.02
5718 5970 2.507324 GTGCCTTCTCTCGCGTCC 60.507 66.667 5.77 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.