Multiple sequence alignment - TraesCS3D01G271800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G271800 chr3D 100.000 2909 0 0 959 3867 376920914 376918006 0.000000e+00 5373
1 TraesCS3D01G271800 chr3D 100.000 656 0 0 1 656 376921872 376921217 0.000000e+00 1212
2 TraesCS3D01G271800 chr3D 92.963 739 28 10 3132 3867 431339166 431338449 0.000000e+00 1055
3 TraesCS3D01G271800 chr3B 92.945 1701 46 23 1453 3128 491520809 491519158 0.000000e+00 2409
4 TraesCS3D01G271800 chr3B 94.131 443 22 3 959 1398 491521260 491520819 0.000000e+00 671
5 TraesCS3D01G271800 chr3B 90.254 472 37 7 1 468 491524718 491524252 3.300000e-170 608
6 TraesCS3D01G271800 chr3A 95.407 1154 37 10 959 2098 501651760 501650609 0.000000e+00 1823
7 TraesCS3D01G271800 chr3A 96.051 1013 21 6 2097 3107 501650527 501649532 0.000000e+00 1631
8 TraesCS3D01G271800 chr3A 88.024 668 45 15 1 656 501652441 501651797 0.000000e+00 758
9 TraesCS3D01G271800 chr5A 93.505 739 31 7 3131 3867 643459712 643460435 0.000000e+00 1083
10 TraesCS3D01G271800 chr5A 93.089 738 34 7 3132 3867 619773060 619773782 0.000000e+00 1064
11 TraesCS3D01G271800 chr1D 93.289 745 32 8 3129 3867 139116461 139117193 0.000000e+00 1083
12 TraesCS3D01G271800 chr7D 93.452 733 26 13 3136 3867 39011497 39012208 0.000000e+00 1068
13 TraesCS3D01G271800 chr2D 92.493 746 42 9 3125 3867 469740687 469741421 0.000000e+00 1055
14 TraesCS3D01G271800 chr2A 92.527 736 39 5 3134 3867 704736505 704737226 0.000000e+00 1040
15 TraesCS3D01G271800 chr7B 92.297 740 38 9 3129 3867 424146940 424147661 0.000000e+00 1033
16 TraesCS3D01G271800 chr6A 91.925 743 44 6 3129 3867 158241203 158240473 0.000000e+00 1026


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G271800 chr3D 376918006 376921872 3866 True 3292.500000 5373 100.000000 1 3867 2 chr3D.!!$R2 3866
1 TraesCS3D01G271800 chr3D 431338449 431339166 717 True 1055.000000 1055 92.963000 3132 3867 1 chr3D.!!$R1 735
2 TraesCS3D01G271800 chr3B 491519158 491524718 5560 True 1229.333333 2409 92.443333 1 3128 3 chr3B.!!$R1 3127
3 TraesCS3D01G271800 chr3A 501649532 501652441 2909 True 1404.000000 1823 93.160667 1 3107 3 chr3A.!!$R1 3106
4 TraesCS3D01G271800 chr5A 643459712 643460435 723 False 1083.000000 1083 93.505000 3131 3867 1 chr5A.!!$F2 736
5 TraesCS3D01G271800 chr5A 619773060 619773782 722 False 1064.000000 1064 93.089000 3132 3867 1 chr5A.!!$F1 735
6 TraesCS3D01G271800 chr1D 139116461 139117193 732 False 1083.000000 1083 93.289000 3129 3867 1 chr1D.!!$F1 738
7 TraesCS3D01G271800 chr7D 39011497 39012208 711 False 1068.000000 1068 93.452000 3136 3867 1 chr7D.!!$F1 731
8 TraesCS3D01G271800 chr2D 469740687 469741421 734 False 1055.000000 1055 92.493000 3125 3867 1 chr2D.!!$F1 742
9 TraesCS3D01G271800 chr2A 704736505 704737226 721 False 1040.000000 1040 92.527000 3134 3867 1 chr2A.!!$F1 733
10 TraesCS3D01G271800 chr7B 424146940 424147661 721 False 1033.000000 1033 92.297000 3129 3867 1 chr7B.!!$F1 738
11 TraesCS3D01G271800 chr6A 158240473 158241203 730 True 1026.000000 1026 91.925000 3129 3867 1 chr6A.!!$R1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 241 1.065109 GCGGGACCAAAACACACAC 59.935 57.895 0.00 0.0 0.00 3.82 F
317 322 1.872952 CGAATGACACTGCCTTCAACA 59.127 47.619 0.00 0.0 0.00 3.33 F
494 3294 2.181426 TTTCTTTGTTGACAACGGCG 57.819 45.000 13.46 4.8 35.28 6.46 F
1162 3973 2.671177 CGGCAGTCACTTTCCGCAG 61.671 63.158 2.56 0.0 35.20 5.18 F
1410 4225 1.204146 ATGTTCATGCCTCCCTACGT 58.796 50.000 0.00 0.0 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1150 3961 0.599204 GGAACGACTGCGGAAAGTGA 60.599 55.000 0.0 0.0 43.17 3.41 R
1152 3963 1.301479 GGGAACGACTGCGGAAAGT 60.301 57.895 0.0 0.0 43.17 2.66 R
1394 4209 1.626321 TGAAACGTAGGGAGGCATGAA 59.374 47.619 0.0 0.0 0.00 2.57 R
2602 5537 0.451783 GCTAACATGGGCGTTTCAGG 59.548 55.000 0.0 0.0 0.00 3.86 R
3324 6266 1.827344 TGCAACCAAACACCATGTCAA 59.173 42.857 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 5.277779 CCTTGCGAGAAATGTTGTCAAACTA 60.278 40.000 1.22 0.00 37.19 2.24
87 90 9.485206 AACTAATACTTTGTTGTCGTATTGTCT 57.515 29.630 0.00 0.00 35.90 3.41
90 93 4.699637 ACTTTGTTGTCGTATTGTCTGGA 58.300 39.130 0.00 0.00 0.00 3.86
193 197 2.536365 GTCGAAGTGCGGATGACAATA 58.464 47.619 0.00 0.00 41.33 1.90
236 241 1.065109 GCGGGACCAAAACACACAC 59.935 57.895 0.00 0.00 0.00 3.82
253 258 2.039951 CCCCCTTCCCCGTGTAGA 59.960 66.667 0.00 0.00 0.00 2.59
317 322 1.872952 CGAATGACACTGCCTTCAACA 59.127 47.619 0.00 0.00 0.00 3.33
329 334 3.067106 GCCTTCAACATCGAGACTTTGA 58.933 45.455 0.00 0.00 0.00 2.69
330 335 3.124297 GCCTTCAACATCGAGACTTTGAG 59.876 47.826 0.00 0.00 29.96 3.02
385 390 2.974698 CCCCGAGCATTGATCCGC 60.975 66.667 0.00 0.00 0.00 5.54
494 3294 2.181426 TTTCTTTGTTGACAACGGCG 57.819 45.000 13.46 4.80 35.28 6.46
565 3376 3.060736 TGCATTGGCCTACTCGTTTTA 57.939 42.857 3.32 0.00 40.13 1.52
1162 3973 2.671177 CGGCAGTCACTTTCCGCAG 61.671 63.158 2.56 0.00 35.20 5.18
1233 4045 2.772691 CGTACGAGCCCCCACTCTC 61.773 68.421 10.44 0.00 34.35 3.20
1258 4070 6.093617 TCTCTTTCTCCTATTCCCTAGTGT 57.906 41.667 0.00 0.00 0.00 3.55
1352 4164 7.161773 TCCTTTCAGTTTCATCAATCCATTC 57.838 36.000 0.00 0.00 0.00 2.67
1362 4177 6.829229 TCATCAATCCATTCCATCATTAGC 57.171 37.500 0.00 0.00 0.00 3.09
1394 4209 7.038048 CAGACTCACATGTCACTATACAATGT 58.962 38.462 0.00 0.00 39.27 2.71
1400 4215 6.908820 CACATGTCACTATACAATGTTCATGC 59.091 38.462 0.00 0.00 35.19 4.06
1410 4225 1.204146 ATGTTCATGCCTCCCTACGT 58.796 50.000 0.00 0.00 0.00 3.57
1412 4227 1.349688 TGTTCATGCCTCCCTACGTTT 59.650 47.619 0.00 0.00 0.00 3.60
1421 4240 2.806244 CCTCCCTACGTTTCAAAGTGTG 59.194 50.000 0.00 0.00 0.00 3.82
1425 4244 3.199677 CCTACGTTTCAAAGTGTGGTGA 58.800 45.455 0.00 0.00 0.00 4.02
1426 4245 3.623960 CCTACGTTTCAAAGTGTGGTGAA 59.376 43.478 0.00 0.00 31.99 3.18
1430 4249 4.862018 ACGTTTCAAAGTGTGGTGAATTTG 59.138 37.500 0.00 0.00 33.90 2.32
1432 4251 5.574830 CGTTTCAAAGTGTGGTGAATTTGAA 59.425 36.000 7.62 7.62 45.16 2.69
1433 4252 6.453659 CGTTTCAAAGTGTGGTGAATTTGAAC 60.454 38.462 10.51 6.60 45.97 3.18
1434 4253 5.913137 TCAAAGTGTGGTGAATTTGAACT 57.087 34.783 0.00 0.00 38.38 3.01
1444 4263 5.209977 GGTGAATTTGAACTAAACCACGAC 58.790 41.667 0.00 0.00 36.67 4.34
1462 4281 8.651391 ACCACGACGTTTATTTATGATGATAA 57.349 30.769 0.00 0.00 0.00 1.75
1569 4413 5.358160 AGCTAAGATGGTAGAAATGGTTTGC 59.642 40.000 0.00 0.00 0.00 3.68
1717 4561 2.315386 GGCTTGCTTGCTTGCTTGC 61.315 57.895 9.28 6.83 0.00 4.01
1718 4562 1.300697 GCTTGCTTGCTTGCTTGCT 60.301 52.632 10.35 0.00 0.00 3.91
1737 4589 2.223021 GCTTGTGTGTGTGTGTGTGTAG 60.223 50.000 0.00 0.00 0.00 2.74
1969 4821 3.772572 GGGGGCTTTTGTTATTGTGGTAT 59.227 43.478 0.00 0.00 0.00 2.73
2098 4950 6.183347 ACCCATCTTGATTCTTGAAACCTAG 58.817 40.000 0.00 0.00 0.00 3.02
2144 5079 8.543774 GTGACTTAAATCATTCCAGAATCTACG 58.456 37.037 0.00 0.00 0.00 3.51
2439 5374 4.329462 TGTGTGCCCCAAAGTTTTATTC 57.671 40.909 0.00 0.00 0.00 1.75
2447 5382 6.660094 TGCCCCAAAGTTTTATTCGTATTACT 59.340 34.615 0.00 0.00 0.00 2.24
2576 5511 4.899352 AACTTAAGTGCTCAGATGACCT 57.101 40.909 9.34 0.00 0.00 3.85
2583 5518 2.121948 TGCTCAGATGACCTGGCTAAT 58.878 47.619 0.00 0.00 43.12 1.73
2602 5537 7.284489 TGGCTAATAAGTATTGGATTGTGTTCC 59.716 37.037 0.00 0.00 36.24 3.62
2622 5557 1.453155 CTGAAACGCCCATGTTAGCT 58.547 50.000 0.00 0.00 0.00 3.32
2623 5558 2.627945 CTGAAACGCCCATGTTAGCTA 58.372 47.619 0.00 0.00 0.00 3.32
2624 5559 2.609459 CTGAAACGCCCATGTTAGCTAG 59.391 50.000 0.00 0.00 0.00 3.42
3063 5999 5.124776 TGGTACGATTTGATGGAATCCAAAC 59.875 40.000 5.89 4.43 44.73 2.93
3069 6005 6.127925 CGATTTGATGGAATCCAAACTCTGAA 60.128 38.462 5.89 0.20 44.73 3.02
3114 6050 1.180029 GTGGTGAGGTAGGCTCGTTA 58.820 55.000 0.00 0.00 0.00 3.18
3246 6188 1.613437 GCACATAGTTTGGTTGCCTGT 59.387 47.619 0.00 0.00 0.00 4.00
3322 6264 2.601481 GCATTAGGCGCACATATGAC 57.399 50.000 10.83 0.00 0.00 3.06
3323 6265 1.872952 GCATTAGGCGCACATATGACA 59.127 47.619 10.83 0.00 0.00 3.58
3324 6266 2.485426 GCATTAGGCGCACATATGACAT 59.515 45.455 10.83 0.00 0.00 3.06
3503 6447 5.501156 CCATTGGCTAAATAGGGGATAGTC 58.499 45.833 0.00 0.00 0.00 2.59
3522 6466 0.034059 CCATCGGTGCTACCAGATCC 59.966 60.000 0.00 0.00 38.47 3.36
3565 6519 2.926778 ACTTCTGCTTCTGCTTCAGT 57.073 45.000 0.00 0.00 40.48 3.41
3574 6528 0.949397 TCTGCTTCAGTTGCTGCTTG 59.051 50.000 0.00 0.00 32.61 4.01
3633 6587 3.490439 TCTTCAAATCCTGCACTGACA 57.510 42.857 0.00 0.00 0.00 3.58
3649 6603 4.456911 CACTGACATCTGTTAAGCCACATT 59.543 41.667 0.00 0.00 0.00 2.71
3656 6610 3.263170 TCTGTTAAGCCACATTGCCTCTA 59.737 43.478 0.00 0.00 0.00 2.43
3676 6630 2.827755 ACCCACTCCAACCTTTTGTTT 58.172 42.857 0.00 0.00 34.00 2.83
3702 6656 1.888512 AGCGTCATTGTCAAATGCCTT 59.111 42.857 0.00 0.00 42.55 4.35
3705 6659 3.674138 GCGTCATTGTCAAATGCCTTCAT 60.674 43.478 0.00 0.00 42.55 2.57
3716 6670 1.148273 GCCTTCATACCATGGCCGA 59.852 57.895 13.04 2.53 39.49 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 6.932400 TCCAGACAATACGACAACAAAGTATT 59.068 34.615 0.00 0.00 40.46 1.89
87 90 1.125093 TGCTCCCGGTCTTCTTTCCA 61.125 55.000 0.00 0.00 0.00 3.53
90 93 0.472471 TTGTGCTCCCGGTCTTCTTT 59.528 50.000 0.00 0.00 0.00 2.52
236 241 1.384082 ATCTACACGGGGAAGGGGG 60.384 63.158 0.00 0.00 0.00 5.40
253 258 3.195002 CGTTGTGGCCGATGCGAT 61.195 61.111 0.00 0.00 38.85 4.58
347 352 6.598064 CGGGGTCTAGTTTGTTTTTCATCTAT 59.402 38.462 0.00 0.00 0.00 1.98
432 437 1.989706 TTGTGGCTTAGGTTGGTTCC 58.010 50.000 0.00 0.00 0.00 3.62
435 440 2.432874 GGTTTTTGTGGCTTAGGTTGGT 59.567 45.455 0.00 0.00 0.00 3.67
490 3290 3.805422 TGCAACCTTACTATATTTCGCCG 59.195 43.478 0.00 0.00 0.00 6.46
493 3293 5.277345 GCCAGTGCAACCTTACTATATTTCG 60.277 44.000 0.00 0.00 37.80 3.46
494 3294 5.588648 TGCCAGTGCAACCTTACTATATTTC 59.411 40.000 0.00 0.00 46.66 2.17
539 3350 1.531602 GTAGGCCAATGCATCCCCC 60.532 63.158 5.01 0.03 40.13 5.40
550 3361 2.633967 TCCAAGTAAAACGAGTAGGCCA 59.366 45.455 5.01 0.00 0.00 5.36
565 3376 0.112995 TTGCTCATGGGCTTCCAAGT 59.887 50.000 20.42 0.00 44.86 3.16
1150 3961 0.599204 GGAACGACTGCGGAAAGTGA 60.599 55.000 0.00 0.00 43.17 3.41
1152 3963 1.301479 GGGAACGACTGCGGAAAGT 60.301 57.895 0.00 0.00 43.17 2.66
1182 3993 4.590487 TCGCCCTCGAACATGAAC 57.410 55.556 0.00 0.00 42.44 3.18
1228 4040 5.838521 GGGAATAGGAGAAAGAGATGAGAGT 59.161 44.000 0.00 0.00 0.00 3.24
1233 4045 6.553100 ACACTAGGGAATAGGAGAAAGAGATG 59.447 42.308 0.00 0.00 35.63 2.90
1258 4070 8.125978 ACTCTTTTCCTGAATATGAATTGCAA 57.874 30.769 0.00 0.00 0.00 4.08
1352 4164 5.011431 TGAGTCTGTGATAGGCTAATGATGG 59.989 44.000 0.00 0.00 42.71 3.51
1362 4177 4.159321 AGTGACATGTGAGTCTGTGATAGG 59.841 45.833 1.15 0.00 39.27 2.57
1394 4209 1.626321 TGAAACGTAGGGAGGCATGAA 59.374 47.619 0.00 0.00 0.00 2.57
1400 4215 2.806244 CACACTTTGAAACGTAGGGAGG 59.194 50.000 0.00 0.00 0.00 4.30
1410 4225 6.696411 AGTTCAAATTCACCACACTTTGAAA 58.304 32.000 9.98 0.00 44.55 2.69
1412 4227 5.913137 AGTTCAAATTCACCACACTTTGA 57.087 34.783 0.00 0.00 36.21 2.69
1421 4240 5.209977 GTCGTGGTTTAGTTCAAATTCACC 58.790 41.667 0.00 0.00 33.38 4.02
1425 4244 5.488645 AACGTCGTGGTTTAGTTCAAATT 57.511 34.783 0.00 0.00 0.00 1.82
1426 4245 5.488645 AAACGTCGTGGTTTAGTTCAAAT 57.511 34.783 0.00 0.00 38.30 2.32
1430 4249 8.434661 TCATAAATAAACGTCGTGGTTTAGTTC 58.565 33.333 20.81 0.00 43.21 3.01
1432 4251 7.887996 TCATAAATAAACGTCGTGGTTTAGT 57.112 32.000 15.24 11.66 43.38 2.24
1433 4252 8.597227 TCATCATAAATAAACGTCGTGGTTTAG 58.403 33.333 15.24 1.14 43.38 1.85
1434 4253 8.476657 TCATCATAAATAAACGTCGTGGTTTA 57.523 30.769 0.00 13.34 44.02 2.01
1551 4394 4.034510 CGAGAGCAAACCATTTCTACCATC 59.965 45.833 0.00 0.00 0.00 3.51
1569 4413 6.455646 GCATTTGTTTACCAGATGTACGAGAG 60.456 42.308 0.00 0.00 37.83 3.20
1717 4561 2.223021 GCTACACACACACACACACAAG 60.223 50.000 0.00 0.00 0.00 3.16
1718 4562 1.735018 GCTACACACACACACACACAA 59.265 47.619 0.00 0.00 0.00 3.33
1737 4589 6.818644 TGATCAGATTACTACACAGAAAAGGC 59.181 38.462 0.00 0.00 0.00 4.35
1969 4821 5.010922 ACACCATACAAACTACTTCGGTACA 59.989 40.000 0.00 0.00 0.00 2.90
2125 5060 6.884832 TGTACCGTAGATTCTGGAATGATTT 58.115 36.000 0.17 0.00 0.00 2.17
2126 5061 6.479972 TGTACCGTAGATTCTGGAATGATT 57.520 37.500 0.17 0.00 0.00 2.57
2127 5062 6.672266 ATGTACCGTAGATTCTGGAATGAT 57.328 37.500 0.17 0.00 0.00 2.45
2133 5068 3.804325 CAGCAATGTACCGTAGATTCTGG 59.196 47.826 13.91 0.00 0.00 3.86
2139 5074 2.100197 AGCTCAGCAATGTACCGTAGA 58.900 47.619 0.00 0.00 0.00 2.59
2144 5079 2.099141 TGTCAGCTCAGCAATGTACC 57.901 50.000 0.00 0.00 0.00 3.34
2414 5349 2.689553 AACTTTGGGGCACACAAAAG 57.310 45.000 0.00 0.00 37.37 2.27
2576 5511 7.284489 GGAACACAATCCAATACTTATTAGCCA 59.716 37.037 0.00 0.00 39.42 4.75
2583 5518 6.381498 TCAGGGAACACAATCCAATACTTA 57.619 37.500 0.00 0.00 41.55 2.24
2602 5537 0.451783 GCTAACATGGGCGTTTCAGG 59.548 55.000 0.00 0.00 0.00 3.86
3063 5999 9.546428 AAAATTTACACCTTCCAAAATTCAGAG 57.454 29.630 0.00 0.00 31.99 3.35
3069 6005 7.569240 TGGTCAAAATTTACACCTTCCAAAAT 58.431 30.769 15.95 0.00 0.00 1.82
3114 6050 2.933906 CGCCCATATTGTACGAAACTGT 59.066 45.455 0.00 0.00 0.00 3.55
3179 6115 3.452474 CTCAAACCGGCTCAATAGAGAG 58.548 50.000 0.00 0.00 44.98 3.20
3180 6116 2.168521 CCTCAAACCGGCTCAATAGAGA 59.831 50.000 0.00 0.00 44.98 3.10
3223 6165 2.899256 AGGCAACCAAACTATGTGCATT 59.101 40.909 0.00 0.00 33.79 3.56
3319 6261 3.295093 ACCAAACACCATGTCAATGTCA 58.705 40.909 0.00 0.00 31.27 3.58
3320 6262 4.050553 CAACCAAACACCATGTCAATGTC 58.949 43.478 0.00 0.00 31.27 3.06
3321 6263 3.740764 GCAACCAAACACCATGTCAATGT 60.741 43.478 0.00 0.00 31.27 2.71
3322 6264 2.801679 GCAACCAAACACCATGTCAATG 59.198 45.455 0.00 0.00 0.00 2.82
3323 6265 2.433604 TGCAACCAAACACCATGTCAAT 59.566 40.909 0.00 0.00 0.00 2.57
3324 6266 1.827344 TGCAACCAAACACCATGTCAA 59.173 42.857 0.00 0.00 0.00 3.18
3503 6447 0.034059 GGATCTGGTAGCACCGATGG 59.966 60.000 1.75 0.00 42.58 3.51
3522 6466 3.669939 AGAAGAGGAGAGGAAGAGGAG 57.330 52.381 0.00 0.00 0.00 3.69
3565 6519 0.535780 AGCAGTAGCACAAGCAGCAA 60.536 50.000 0.00 0.00 45.49 3.91
3574 6528 1.208614 GCAGCAACAGCAGTAGCAC 59.791 57.895 0.00 0.00 45.49 4.40
3649 6603 1.198759 GGTTGGAGTGGGTAGAGGCA 61.199 60.000 0.00 0.00 0.00 4.75
3656 6610 2.543037 AACAAAAGGTTGGAGTGGGT 57.457 45.000 0.00 0.00 38.60 4.51
3676 6630 4.297510 CATTTGACAATGACGCTTGGAAA 58.702 39.130 0.00 0.00 42.35 3.13
3702 6656 1.419381 TAGCTTCGGCCATGGTATGA 58.581 50.000 14.67 6.10 43.01 2.15
3705 6659 0.906066 TGTTAGCTTCGGCCATGGTA 59.094 50.000 14.67 0.00 43.01 3.25
3716 6670 2.076863 GCCTGACGATGTTGTTAGCTT 58.923 47.619 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.