Multiple sequence alignment - TraesCS3D01G270700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G270700 chr3D 100.000 5602 0 0 1 5602 375210259 375215860 0.000000e+00 10346.0
1 TraesCS3D01G270700 chr3D 85.742 519 51 12 469 979 415165009 415165512 1.380000e-145 527.0
2 TraesCS3D01G270700 chr3D 81.068 206 32 6 5398 5598 566881899 566882102 2.090000e-34 158.0
3 TraesCS3D01G270700 chr3D 86.250 80 11 0 369 448 415164933 415165012 2.780000e-13 87.9
4 TraesCS3D01G270700 chr3D 100.000 46 0 0 4785 4830 375214994 375215039 1.000000e-12 86.1
5 TraesCS3D01G270700 chr3D 100.000 46 0 0 4736 4781 375215043 375215088 1.000000e-12 86.1
6 TraesCS3D01G270700 chr3D 92.000 50 2 2 2388 2436 480119080 480119128 1.010000e-07 69.4
7 TraesCS3D01G270700 chr3D 91.837 49 1 3 2388 2434 14048963 14048916 1.300000e-06 65.8
8 TraesCS3D01G270700 chr3B 96.093 2278 48 9 2400 4661 489363622 489365874 0.000000e+00 3675.0
9 TraesCS3D01G270700 chr3B 94.914 2320 70 23 109 2387 489360909 489363221 0.000000e+00 3587.0
10 TraesCS3D01G270700 chr3B 91.813 171 10 3 4785 4953 489366058 489366226 9.380000e-58 235.0
11 TraesCS3D01G270700 chr3B 91.729 133 6 2 4658 4785 489365975 489366107 4.460000e-41 180.0
12 TraesCS3D01G270700 chr3B 88.652 141 15 1 5260 5400 489370567 489370706 2.680000e-38 171.0
13 TraesCS3D01G270700 chr3B 90.566 106 7 2 2010 2114 60259655 60259758 2.720000e-28 137.0
14 TraesCS3D01G270700 chr3B 90.099 101 9 1 2009 2109 60259750 60259651 4.550000e-26 130.0
15 TraesCS3D01G270700 chr3B 100.000 45 0 0 1 45 489360550 489360594 3.600000e-12 84.2
16 TraesCS3D01G270700 chr3B 92.157 51 0 4 2385 2432 726132869 726132820 1.010000e-07 69.4
17 TraesCS3D01G270700 chr3A 96.721 2104 48 8 2400 4487 498248561 498250659 0.000000e+00 3483.0
18 TraesCS3D01G270700 chr3A 93.213 1886 79 27 85 1933 498246150 498248023 0.000000e+00 2728.0
19 TraesCS3D01G270700 chr3A 81.684 748 80 37 258 979 535190640 535189924 2.260000e-158 569.0
20 TraesCS3D01G270700 chr3A 83.192 589 44 24 4785 5335 498251131 498251702 6.520000e-134 488.0
21 TraesCS3D01G270700 chr3A 94.576 295 11 2 2060 2353 498248273 498248563 8.560000e-123 451.0
22 TraesCS3D01G270700 chr3A 95.000 180 7 2 4484 4661 498250781 498250960 1.190000e-71 281.0
23 TraesCS3D01G270700 chr3A 96.721 122 1 1 4658 4776 498251050 498251171 3.420000e-47 200.0
24 TraesCS3D01G270700 chr3A 94.444 72 4 0 1908 1979 498248202 498248273 1.650000e-20 111.0
25 TraesCS3D01G270700 chr1D 84.357 863 58 33 178 984 317426707 317427548 0.000000e+00 774.0
26 TraesCS3D01G270700 chr1D 86.667 105 10 3 2002 2106 158098916 158099016 4.590000e-21 113.0
27 TraesCS3D01G270700 chr1D 81.295 139 23 2 5462 5598 481217492 481217355 5.930000e-20 110.0
28 TraesCS3D01G270700 chr1D 87.500 56 3 4 2388 2440 437988439 437988385 1.690000e-05 62.1
29 TraesCS3D01G270700 chr1B 83.896 888 60 38 156 984 429583352 429584215 0.000000e+00 771.0
30 TraesCS3D01G270700 chr1A 82.809 890 72 44 156 984 398447793 398448662 0.000000e+00 721.0
31 TraesCS3D01G270700 chr1A 87.065 402 39 7 460 856 508197755 508198148 5.150000e-120 442.0
32 TraesCS3D01G270700 chr1A 93.023 43 2 1 2400 2441 85036582 85036624 1.690000e-05 62.1
33 TraesCS3D01G270700 chr7B 87.621 622 53 12 369 976 141798394 141799005 0.000000e+00 701.0
34 TraesCS3D01G270700 chr7B 91.346 104 6 3 2010 2113 13866616 13866716 7.570000e-29 139.0
35 TraesCS3D01G270700 chr7B 85.507 138 12 6 114 244 141797778 141797914 2.720000e-28 137.0
36 TraesCS3D01G270700 chr7B 78.049 205 27 12 5395 5596 44889740 44889929 4.590000e-21 113.0
37 TraesCS3D01G270700 chr7D 86.943 628 63 8 369 985 175918807 175919426 0.000000e+00 688.0
38 TraesCS3D01G270700 chr7D 84.821 112 14 2 2002 2113 185177222 185177330 5.930000e-20 110.0
39 TraesCS3D01G270700 chr5D 85.781 640 63 11 369 994 458926576 458925951 0.000000e+00 652.0
40 TraesCS3D01G270700 chr5D 79.104 201 39 3 5396 5596 361579532 361579335 9.790000e-28 135.0
41 TraesCS3D01G270700 chr5B 85.233 623 62 12 369 976 562979702 562979095 1.030000e-171 614.0
42 TraesCS3D01G270700 chr5B 82.212 208 31 6 5396 5600 124763775 124763571 2.070000e-39 174.0
43 TraesCS3D01G270700 chrUn 80.952 210 33 6 5393 5598 195375232 195375026 5.810000e-35 159.0
44 TraesCS3D01G270700 chr7A 84.397 141 20 2 5459 5598 608261751 608261612 2.720000e-28 137.0
45 TraesCS3D01G270700 chr7A 88.991 109 8 4 2009 2116 678142626 678142731 1.270000e-26 132.0
46 TraesCS3D01G270700 chr4B 81.977 172 21 8 5408 5578 581163469 581163631 2.720000e-28 137.0
47 TraesCS3D01G270700 chr5A 90.816 98 8 1 2009 2106 533944283 533944187 4.550000e-26 130.0
48 TraesCS3D01G270700 chr5A 85.227 88 8 4 5396 5481 342458272 342458188 1.000000e-12 86.1
49 TraesCS3D01G270700 chr6D 78.919 185 36 3 5408 5591 298958609 298958427 7.620000e-24 122.0
50 TraesCS3D01G270700 chr6D 95.918 49 2 0 2115 2163 113503587 113503635 4.650000e-11 80.5
51 TraesCS3D01G270700 chr2D 79.661 177 31 5 5422 5598 412635534 412635705 7.620000e-24 122.0
52 TraesCS3D01G270700 chr2D 94.737 38 2 0 2400 2437 539427352 539427389 6.060000e-05 60.2
53 TraesCS3D01G270700 chr4D 87.755 98 11 1 2009 2106 210457864 210457768 4.590000e-21 113.0
54 TraesCS3D01G270700 chr2B 95.455 66 2 1 182 246 679895967 679896032 2.760000e-18 104.0
55 TraesCS3D01G270700 chr2A 91.228 57 2 3 2381 2434 660503724 660503780 2.160000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G270700 chr3D 375210259 375215860 5601 False 3506.066667 10346 100.000000 1 5602 3 chr3D.!!$F3 5601
1 TraesCS3D01G270700 chr3D 415164933 415165512 579 False 307.450000 527 85.996000 369 979 2 chr3D.!!$F4 610
2 TraesCS3D01G270700 chr3B 489360550 489366226 5676 False 1552.240000 3675 94.909800 1 4953 5 chr3B.!!$F3 4952
3 TraesCS3D01G270700 chr3A 498246150 498251702 5552 False 1106.000000 3483 93.409571 85 5335 7 chr3A.!!$F1 5250
4 TraesCS3D01G270700 chr3A 535189924 535190640 716 True 569.000000 569 81.684000 258 979 1 chr3A.!!$R1 721
5 TraesCS3D01G270700 chr1D 317426707 317427548 841 False 774.000000 774 84.357000 178 984 1 chr1D.!!$F2 806
6 TraesCS3D01G270700 chr1B 429583352 429584215 863 False 771.000000 771 83.896000 156 984 1 chr1B.!!$F1 828
7 TraesCS3D01G270700 chr1A 398447793 398448662 869 False 721.000000 721 82.809000 156 984 1 chr1A.!!$F2 828
8 TraesCS3D01G270700 chr7B 141797778 141799005 1227 False 419.000000 701 86.564000 114 976 2 chr7B.!!$F3 862
9 TraesCS3D01G270700 chr7D 175918807 175919426 619 False 688.000000 688 86.943000 369 985 1 chr7D.!!$F1 616
10 TraesCS3D01G270700 chr5D 458925951 458926576 625 True 652.000000 652 85.781000 369 994 1 chr5D.!!$R2 625
11 TraesCS3D01G270700 chr5B 562979095 562979702 607 True 614.000000 614 85.233000 369 976 1 chr5B.!!$R2 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 814 0.039527 GCTAGCCCAACAAACAACGG 60.040 55.000 2.29 0.00 0.00 4.44 F
493 1155 0.323629 TAGCCCGGTTTGAGGACTTG 59.676 55.000 0.00 0.00 0.00 3.16 F
495 1157 0.955919 GCCCGGTTTGAGGACTTGAG 60.956 60.000 0.00 0.00 0.00 3.02 F
745 1428 1.508632 TGTTCGCCACTCTAACAAGC 58.491 50.000 0.00 0.00 30.54 4.01 F
1514 2213 2.110721 AGCCTTGAAATGACCTTTCCCT 59.889 45.455 1.38 0.00 42.23 4.20 F
3185 4496 1.198637 CTTGTCTGCAGCTGCCTTTAC 59.801 52.381 34.64 24.89 41.18 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 3057 7.050377 GTCCTTTCTGTCAATGATCTGGATTA 58.950 38.462 0.00 0.00 0.00 1.75 R
2421 3719 3.639094 TGCTTTCTATCTACTCCCTCTGC 59.361 47.826 0.00 0.00 0.00 4.26 R
2775 4086 6.212888 ACCTTCAGCAATTCATAATGGAAC 57.787 37.500 0.00 0.00 0.00 3.62 R
3185 4496 6.672147 ACTACAGCTGAAACATTTGCTAAAG 58.328 36.000 23.35 0.00 34.10 1.85 R
3357 4668 1.753073 CTGTACGTACCCCTTACCCAG 59.247 57.143 22.43 6.47 0.00 4.45 R
4792 6346 0.035317 TACAGGTGCTGCTGAACTGG 59.965 55.000 9.48 0.00 34.37 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.145225 CGAAGAGGCAGTCGTGTTG 58.855 57.895 0.00 0.00 32.61 3.33
46 47 1.284982 CGAAGAGGCAGTCGTGTTGG 61.285 60.000 0.00 0.00 32.61 3.77
47 48 0.951040 GAAGAGGCAGTCGTGTTGGG 60.951 60.000 0.00 0.00 0.00 4.12
48 49 1.696097 AAGAGGCAGTCGTGTTGGGT 61.696 55.000 0.00 0.00 0.00 4.51
49 50 0.830444 AGAGGCAGTCGTGTTGGGTA 60.830 55.000 0.00 0.00 0.00 3.69
50 51 0.669625 GAGGCAGTCGTGTTGGGTAC 60.670 60.000 0.00 0.00 0.00 3.34
51 52 2.025418 GGCAGTCGTGTTGGGTACG 61.025 63.158 0.00 0.00 42.56 3.67
52 53 1.007038 GCAGTCGTGTTGGGTACGA 60.007 57.895 0.00 0.00 47.00 3.43
56 57 2.718094 TCGTGTTGGGTACGACTGA 58.282 52.632 0.00 0.00 44.65 3.41
57 58 1.250328 TCGTGTTGGGTACGACTGAT 58.750 50.000 0.00 0.00 44.65 2.90
58 59 1.200716 TCGTGTTGGGTACGACTGATC 59.799 52.381 0.00 0.00 44.65 2.92
59 60 1.201647 CGTGTTGGGTACGACTGATCT 59.798 52.381 0.00 0.00 43.82 2.75
60 61 2.352421 CGTGTTGGGTACGACTGATCTT 60.352 50.000 0.00 0.00 43.82 2.40
61 62 3.660865 GTGTTGGGTACGACTGATCTTT 58.339 45.455 0.00 0.00 31.91 2.52
62 63 4.062991 GTGTTGGGTACGACTGATCTTTT 58.937 43.478 0.00 0.00 31.91 2.27
63 64 4.514066 GTGTTGGGTACGACTGATCTTTTT 59.486 41.667 0.00 0.00 31.91 1.94
96 97 3.833070 AGGGGATGGTACGATTGATCTAC 59.167 47.826 0.00 0.00 0.00 2.59
247 814 0.039527 GCTAGCCCAACAAACAACGG 60.040 55.000 2.29 0.00 0.00 4.44
491 1153 1.003233 CTTTAGCCCGGTTTGAGGACT 59.997 52.381 0.00 0.00 0.00 3.85
492 1154 1.061546 TTAGCCCGGTTTGAGGACTT 58.938 50.000 0.00 0.00 0.00 3.01
493 1155 0.323629 TAGCCCGGTTTGAGGACTTG 59.676 55.000 0.00 0.00 0.00 3.16
494 1156 1.072505 GCCCGGTTTGAGGACTTGA 59.927 57.895 0.00 0.00 0.00 3.02
495 1157 0.955919 GCCCGGTTTGAGGACTTGAG 60.956 60.000 0.00 0.00 0.00 3.02
506 1168 3.006967 TGAGGACTTGAGTTGAGGTAAGC 59.993 47.826 0.00 0.00 0.00 3.09
508 1170 4.417437 AGGACTTGAGTTGAGGTAAGCTA 58.583 43.478 0.00 0.00 0.00 3.32
558 1220 6.765915 ATTTCTGATTTAGGGTTTGCTCTC 57.234 37.500 0.00 0.00 0.00 3.20
591 1253 3.245016 TGCATCAATCAGGTGGAAGAGTT 60.245 43.478 0.00 0.00 0.00 3.01
615 1277 9.737025 GTTAAGTCTATTGCGTTAACTAAACAG 57.263 33.333 3.71 0.00 38.03 3.16
649 1313 4.415881 TCCAGTACATGAACACACAGTT 57.584 40.909 0.00 0.00 44.93 3.16
711 1392 4.701765 AGCACCTGATCAGTGACATAATC 58.298 43.478 21.11 5.64 0.00 1.75
745 1428 1.508632 TGTTCGCCACTCTAACAAGC 58.491 50.000 0.00 0.00 30.54 4.01
845 1538 5.958955 AGGCTTCTCTTATGCAAAATTGAC 58.041 37.500 0.00 0.00 0.00 3.18
846 1539 4.795278 GGCTTCTCTTATGCAAAATTGACG 59.205 41.667 0.00 0.00 0.00 4.35
849 1542 6.413235 GCTTCTCTTATGCAAAATTGACGATC 59.587 38.462 0.00 0.00 0.00 3.69
969 1666 4.587262 GTGGACCACCCTGTTTTAAAATCT 59.413 41.667 14.16 0.00 35.38 2.40
1514 2213 2.110721 AGCCTTGAAATGACCTTTCCCT 59.889 45.455 1.38 0.00 42.23 4.20
1516 2215 3.306294 GCCTTGAAATGACCTTTCCCTTG 60.306 47.826 1.38 0.00 42.23 3.61
1904 2609 7.147637 GGTCAAGGGTAGAGTTAAGATCTTGAT 60.148 40.741 18.47 3.47 40.54 2.57
2053 2962 5.989777 AGTGTCGCTGATTTAGTACAAAGTT 59.010 36.000 0.00 0.00 0.00 2.66
2142 3052 5.010719 AGTCAAACTCTAACTGTCGATCCAA 59.989 40.000 0.00 0.00 0.00 3.53
2147 3057 5.794894 ACTCTAACTGTCGATCCAATTTGT 58.205 37.500 0.00 0.00 0.00 2.83
2387 3297 8.294690 TCTACTACTCCCTCCCAAAATAAGTAT 58.705 37.037 0.00 0.00 0.00 2.12
2388 3298 9.597681 CTACTACTCCCTCCCAAAATAAGTATA 57.402 37.037 0.00 0.00 0.00 1.47
2389 3299 8.865244 ACTACTCCCTCCCAAAATAAGTATAA 57.135 34.615 0.00 0.00 0.00 0.98
2390 3300 9.287818 ACTACTCCCTCCCAAAATAAGTATAAA 57.712 33.333 0.00 0.00 0.00 1.40
2391 3301 9.780186 CTACTCCCTCCCAAAATAAGTATAAAG 57.220 37.037 0.00 0.00 0.00 1.85
2393 3303 8.621073 ACTCCCTCCCAAAATAAGTATAAAGTT 58.379 33.333 0.00 0.00 0.00 2.66
2394 3304 8.817092 TCCCTCCCAAAATAAGTATAAAGTTG 57.183 34.615 0.00 0.00 0.00 3.16
2395 3305 8.616598 TCCCTCCCAAAATAAGTATAAAGTTGA 58.383 33.333 0.00 0.00 0.00 3.18
2396 3306 8.903820 CCCTCCCAAAATAAGTATAAAGTTGAG 58.096 37.037 0.00 0.00 0.00 3.02
2397 3307 9.681062 CCTCCCAAAATAAGTATAAAGTTGAGA 57.319 33.333 0.00 0.00 0.00 3.27
2421 3719 5.301805 ACAAGTTGAGACACTTATTTTGGGG 59.698 40.000 10.54 0.00 35.10 4.96
2775 4086 2.672714 TGCTGCTCAACTTGTACTACG 58.327 47.619 0.00 0.00 0.00 3.51
3185 4496 1.198637 CTTGTCTGCAGCTGCCTTTAC 59.801 52.381 34.64 24.89 41.18 2.01
3334 4645 6.056090 TGCCAAGTACAGGTAAATATGACA 57.944 37.500 6.29 0.00 0.00 3.58
3418 4729 4.974645 AAGTCATAAACCTGTCCAGACA 57.025 40.909 0.00 0.00 39.32 3.41
3425 4736 3.550437 AACCTGTCCAGACATGATAGC 57.450 47.619 9.65 0.00 41.01 2.97
3531 4842 9.649167 TTGTTTTCCCTTTTAAATCGTGTAAAA 57.351 25.926 0.00 0.00 0.00 1.52
3532 4843 9.819267 TGTTTTCCCTTTTAAATCGTGTAAAAT 57.181 25.926 0.00 0.00 31.75 1.82
3651 4962 4.082136 ACACTCGGAAGTTGTTAGAGGATC 60.082 45.833 0.00 0.00 31.71 3.36
3729 5040 4.096382 CGCAGCATTATGAACCCTTAAACT 59.904 41.667 0.00 0.00 0.00 2.66
3768 5079 0.313672 TCACGGAAAACCTGCAATGC 59.686 50.000 0.00 0.00 0.00 3.56
3971 5283 7.647907 ATTTCAATTCAGTTTCATGTTGCTC 57.352 32.000 0.00 0.00 0.00 4.26
4104 5416 6.992664 ATATTCTCTTCCATAGACAGCAGT 57.007 37.500 0.00 0.00 0.00 4.40
4107 5419 1.208052 TCTTCCATAGACAGCAGTGCC 59.792 52.381 12.58 0.00 0.00 5.01
4170 5482 8.952602 TGGGACTACTACAGATATCCTTTACTA 58.047 37.037 0.00 0.00 0.00 1.82
4217 5529 6.461110 CAAGCATCTTTCTTGTCCCATTAT 57.539 37.500 0.00 0.00 36.93 1.28
4264 5580 7.493367 AGAAGTGCACTATTTAGATCACCTAC 58.507 38.462 22.01 0.00 33.26 3.18
4271 5587 7.418025 GCACTATTTAGATCACCTACTTCTGGT 60.418 40.741 0.00 0.00 38.53 4.00
4279 5595 2.124411 ACCTACTTCTGGTGTTGTGGT 58.876 47.619 0.00 0.00 36.30 4.16
4284 5600 1.401552 CTTCTGGTGTTGTGGTGTGTG 59.598 52.381 0.00 0.00 0.00 3.82
4380 5698 5.105752 GCAAGACAACGAATCTGATAGTCT 58.894 41.667 0.00 0.00 36.51 3.24
4505 5948 0.942410 CATGCCAAGTGCTTGCACAC 60.942 55.000 24.82 12.96 42.00 3.82
4613 6057 0.390998 TGCAATGAGATCGGCGTTCA 60.391 50.000 19.04 15.35 0.00 3.18
4785 6339 2.031516 GGTCTCGTCGTCGGTCTGA 61.032 63.158 1.55 0.00 37.69 3.27
4786 6340 1.572085 GGTCTCGTCGTCGGTCTGAA 61.572 60.000 1.55 0.00 37.69 3.02
4787 6341 0.236711 GTCTCGTCGTCGGTCTGAAA 59.763 55.000 1.55 0.00 37.69 2.69
4788 6342 0.236711 TCTCGTCGTCGGTCTGAAAC 59.763 55.000 1.55 0.00 37.69 2.78
4789 6343 0.237761 CTCGTCGTCGGTCTGAAACT 59.762 55.000 1.55 0.00 37.69 2.66
4790 6344 0.664761 TCGTCGTCGGTCTGAAACTT 59.335 50.000 1.55 0.00 37.69 2.66
4791 6345 1.050767 CGTCGTCGGTCTGAAACTTC 58.949 55.000 0.00 0.00 0.00 3.01
4792 6346 1.416373 GTCGTCGGTCTGAAACTTCC 58.584 55.000 0.00 0.00 0.00 3.46
4793 6347 0.316204 TCGTCGGTCTGAAACTTCCC 59.684 55.000 0.00 0.00 0.00 3.97
4794 6348 0.032952 CGTCGGTCTGAAACTTCCCA 59.967 55.000 0.00 0.00 0.00 4.37
4795 6349 1.797025 GTCGGTCTGAAACTTCCCAG 58.203 55.000 0.00 0.00 0.00 4.45
4796 6350 1.070289 GTCGGTCTGAAACTTCCCAGT 59.930 52.381 0.00 0.00 33.11 4.00
4797 6351 1.766496 TCGGTCTGAAACTTCCCAGTT 59.234 47.619 0.00 0.00 45.89 3.16
4798 6352 2.143925 CGGTCTGAAACTTCCCAGTTC 58.856 52.381 0.00 0.00 42.89 3.01
4799 6353 2.484770 CGGTCTGAAACTTCCCAGTTCA 60.485 50.000 0.00 0.00 42.89 3.18
4800 6354 3.142174 GGTCTGAAACTTCCCAGTTCAG 58.858 50.000 6.34 6.34 42.89 3.02
4801 6355 2.550180 GTCTGAAACTTCCCAGTTCAGC 59.450 50.000 7.59 1.10 42.89 4.26
4802 6356 2.172505 TCTGAAACTTCCCAGTTCAGCA 59.827 45.455 7.59 0.00 42.89 4.41
4803 6357 2.551459 CTGAAACTTCCCAGTTCAGCAG 59.449 50.000 0.13 0.00 42.89 4.24
4804 6358 1.268079 GAAACTTCCCAGTTCAGCAGC 59.732 52.381 0.00 0.00 42.89 5.25
4805 6359 0.183492 AACTTCCCAGTTCAGCAGCA 59.817 50.000 0.00 0.00 39.15 4.41
4806 6360 0.536006 ACTTCCCAGTTCAGCAGCAC 60.536 55.000 0.00 0.00 0.00 4.40
4807 6361 1.228245 TTCCCAGTTCAGCAGCACC 60.228 57.895 0.00 0.00 0.00 5.01
4808 6362 1.708993 TTCCCAGTTCAGCAGCACCT 61.709 55.000 0.00 0.00 0.00 4.00
4809 6363 1.970114 CCCAGTTCAGCAGCACCTG 60.970 63.158 0.00 0.00 34.12 4.00
4810 6364 1.228063 CCAGTTCAGCAGCACCTGT 60.228 57.895 0.00 0.00 33.43 4.00
4811 6365 0.035317 CCAGTTCAGCAGCACCTGTA 59.965 55.000 0.00 0.00 33.43 2.74
4812 6366 1.151668 CAGTTCAGCAGCACCTGTAC 58.848 55.000 0.00 5.61 34.51 2.90
4813 6367 0.035458 AGTTCAGCAGCACCTGTACC 59.965 55.000 0.00 0.00 34.75 3.34
4814 6368 0.035458 GTTCAGCAGCACCTGTACCT 59.965 55.000 0.00 0.00 33.43 3.08
4815 6369 0.764890 TTCAGCAGCACCTGTACCTT 59.235 50.000 0.00 0.00 33.43 3.50
4816 6370 0.035317 TCAGCAGCACCTGTACCTTG 59.965 55.000 0.00 0.00 33.43 3.61
4817 6371 0.957395 CAGCAGCACCTGTACCTTGG 60.957 60.000 0.00 0.00 33.43 3.61
4818 6372 1.073199 GCAGCACCTGTACCTTGGT 59.927 57.895 0.00 0.00 36.96 3.67
4819 6373 0.955919 GCAGCACCTGTACCTTGGTC 60.956 60.000 0.00 0.00 33.75 4.02
4820 6374 0.687354 CAGCACCTGTACCTTGGTCT 59.313 55.000 0.00 0.00 33.75 3.85
4821 6375 0.977395 AGCACCTGTACCTTGGTCTC 59.023 55.000 0.00 0.00 33.75 3.36
4822 6376 0.389948 GCACCTGTACCTTGGTCTCG 60.390 60.000 0.00 0.00 33.75 4.04
4823 6377 0.966920 CACCTGTACCTTGGTCTCGT 59.033 55.000 0.00 0.00 33.75 4.18
4824 6378 1.067776 CACCTGTACCTTGGTCTCGTC 60.068 57.143 0.00 0.00 33.75 4.20
4825 6379 0.170561 CCTGTACCTTGGTCTCGTCG 59.829 60.000 0.00 0.00 0.00 5.12
4826 6380 0.879765 CTGTACCTTGGTCTCGTCGT 59.120 55.000 0.00 0.00 0.00 4.34
4827 6381 0.877071 TGTACCTTGGTCTCGTCGTC 59.123 55.000 0.00 0.00 0.00 4.20
4828 6382 0.179205 GTACCTTGGTCTCGTCGTCG 60.179 60.000 0.00 0.00 38.55 5.12
4829 6383 1.300971 TACCTTGGTCTCGTCGTCGG 61.301 60.000 1.55 0.00 37.69 4.79
4830 6384 2.178521 CTTGGTCTCGTCGTCGGG 59.821 66.667 1.55 0.00 39.14 5.14
4831 6385 3.338126 CTTGGTCTCGTCGTCGGGG 62.338 68.421 1.31 0.00 38.21 5.73
4832 6386 4.648626 TGGTCTCGTCGTCGGGGT 62.649 66.667 1.31 0.00 38.21 4.95
4833 6387 3.808656 GGTCTCGTCGTCGGGGTC 61.809 72.222 1.31 0.00 38.21 4.46
4834 6388 2.745492 GTCTCGTCGTCGGGGTCT 60.745 66.667 1.31 0.00 38.21 3.85
4835 6389 2.745100 TCTCGTCGTCGGGGTCTG 60.745 66.667 1.31 0.00 38.21 3.51
4848 6402 2.615493 CGGGGTCTGTATTTCTGTGCTT 60.615 50.000 0.00 0.00 0.00 3.91
4851 6405 2.094417 GGTCTGTATTTCTGTGCTTCGC 59.906 50.000 0.00 0.00 0.00 4.70
4865 6419 0.099082 CTTCGCTAGAGTGGACGGTC 59.901 60.000 0.00 0.00 0.00 4.79
4878 6432 3.003897 GTGGACGGTCTGCAATTTTGTAA 59.996 43.478 8.23 0.00 0.00 2.41
4883 6439 3.261580 GGTCTGCAATTTTGTAATGGGC 58.738 45.455 0.00 0.00 0.00 5.36
4910 6466 1.196127 CCGTTTAGCCGTTGACCTTTC 59.804 52.381 0.00 0.00 0.00 2.62
4927 6483 0.178533 TTCGTTTCCAGTTGTCGGGT 59.821 50.000 0.00 0.00 0.00 5.28
4991 6547 3.005261 AGTTCCGATCCGATCTCAGATTG 59.995 47.826 6.81 0.00 0.00 2.67
5002 6558 4.441217 CGATCTCAGATTGTCACCACAGAT 60.441 45.833 0.00 0.00 32.71 2.90
5006 6562 4.352893 TCAGATTGTCACCACAGATAGGA 58.647 43.478 0.00 0.00 32.71 2.94
5029 6592 4.912395 GTGGGTGGTGGCTGCCAA 62.912 66.667 25.23 5.83 40.68 4.52
5078 6652 1.341531 GATATACACAGCTGCCGACCT 59.658 52.381 15.27 0.00 0.00 3.85
5101 6683 2.455032 CATACAGCAGAGACGTACAGC 58.545 52.381 0.00 0.00 0.00 4.40
5131 6713 4.388499 TCCGGGGCGCTCTGAAAC 62.388 66.667 20.35 0.00 0.00 2.78
5136 6718 1.668151 GGGCGCTCTGAAACTTCGT 60.668 57.895 7.64 0.00 0.00 3.85
5137 6719 0.389426 GGGCGCTCTGAAACTTCGTA 60.389 55.000 7.64 0.00 0.00 3.43
5138 6720 0.714439 GGCGCTCTGAAACTTCGTAC 59.286 55.000 7.64 0.00 0.00 3.67
5139 6721 0.362512 GCGCTCTGAAACTTCGTACG 59.637 55.000 9.53 9.53 0.00 3.67
5140 6722 1.959747 CGCTCTGAAACTTCGTACGA 58.040 50.000 15.28 15.28 0.00 3.43
5141 6723 1.905687 CGCTCTGAAACTTCGTACGAG 59.094 52.381 18.64 14.49 0.00 4.18
5142 6724 2.251893 GCTCTGAAACTTCGTACGAGG 58.748 52.381 23.99 23.99 0.00 4.63
5143 6725 2.251893 CTCTGAAACTTCGTACGAGGC 58.748 52.381 25.30 11.28 0.00 4.70
5150 6732 0.316032 CTTCGTACGAGGCTACGAGC 60.316 60.000 18.64 0.00 46.81 5.03
5167 6749 4.126390 CGAGCGCGTGACTTGCTG 62.126 66.667 8.43 0.00 39.49 4.41
5168 6750 3.782244 GAGCGCGTGACTTGCTGG 61.782 66.667 8.43 0.00 39.49 4.85
5169 6751 4.609018 AGCGCGTGACTTGCTGGT 62.609 61.111 8.43 0.00 37.62 4.00
5170 6752 2.736995 GCGCGTGACTTGCTGGTA 60.737 61.111 8.43 0.00 0.00 3.25
5201 6783 2.289547 CTGTTTGATTTGGAACGGTCGT 59.710 45.455 0.00 0.00 0.00 4.34
5202 6784 2.288458 TGTTTGATTTGGAACGGTCGTC 59.712 45.455 0.00 0.00 0.00 4.20
5247 6835 1.407712 CCGGTCAATTACCCCGAATGT 60.408 52.381 10.27 0.00 46.62 2.71
5278 6866 1.517242 GGCCATCGATCTTGTCATCC 58.483 55.000 0.00 0.00 0.00 3.51
5282 6870 2.294512 CCATCGATCTTGTCATCCGAGA 59.705 50.000 0.00 0.00 37.99 4.04
5285 6873 2.614520 TCGATCTTGTCATCCGAGACTC 59.385 50.000 0.00 0.00 36.38 3.36
5292 6880 0.035343 TCATCCGAGACTCGTCTGGT 60.035 55.000 22.61 1.81 40.61 4.00
5299 6887 2.418976 CGAGACTCGTCTGGTTCACATA 59.581 50.000 16.83 0.00 40.61 2.29
5303 6891 5.794894 AGACTCGTCTGGTTCACATAATTT 58.205 37.500 0.00 0.00 38.75 1.82
5305 6893 6.147821 AGACTCGTCTGGTTCACATAATTTTG 59.852 38.462 0.00 0.00 38.75 2.44
5307 6895 5.309638 TCGTCTGGTTCACATAATTTTGGA 58.690 37.500 0.89 0.00 0.00 3.53
5308 6896 5.765677 TCGTCTGGTTCACATAATTTTGGAA 59.234 36.000 0.89 0.00 0.00 3.53
5309 6897 6.072728 TCGTCTGGTTCACATAATTTTGGAAG 60.073 38.462 0.89 0.00 0.00 3.46
5319 6913 8.991026 TCACATAATTTTGGAAGCAAAAGAATG 58.009 29.630 4.38 4.38 37.45 2.67
5321 6915 7.391275 ACATAATTTTGGAAGCAAAAGAATGGG 59.609 33.333 7.47 0.00 37.45 4.00
5335 6929 1.798223 GAATGGGAAAAACGCAAAGGC 59.202 47.619 0.00 0.00 44.22 4.35
5336 6930 0.755686 ATGGGAAAAACGCAAAGGCA 59.244 45.000 0.00 0.00 44.22 4.75
5337 6931 0.537188 TGGGAAAAACGCAAAGGCAA 59.463 45.000 0.00 0.00 41.24 4.52
5338 6932 1.066143 TGGGAAAAACGCAAAGGCAAA 60.066 42.857 0.00 0.00 41.24 3.68
5339 6933 2.010497 GGGAAAAACGCAAAGGCAAAA 58.990 42.857 0.00 0.00 41.24 2.44
5340 6934 2.616376 GGGAAAAACGCAAAGGCAAAAT 59.384 40.909 0.00 0.00 41.24 1.82
5341 6935 3.810386 GGGAAAAACGCAAAGGCAAAATA 59.190 39.130 0.00 0.00 41.24 1.40
5342 6936 4.273724 GGGAAAAACGCAAAGGCAAAATAA 59.726 37.500 0.00 0.00 41.24 1.40
5343 6937 5.439828 GGAAAAACGCAAAGGCAAAATAAG 58.560 37.500 0.00 0.00 41.24 1.73
5344 6938 5.235401 GGAAAAACGCAAAGGCAAAATAAGA 59.765 36.000 0.00 0.00 41.24 2.10
5345 6939 6.238239 GGAAAAACGCAAAGGCAAAATAAGAA 60.238 34.615 0.00 0.00 41.24 2.52
5346 6940 6.859420 AAAACGCAAAGGCAAAATAAGAAT 57.141 29.167 0.00 0.00 41.24 2.40
5347 6941 5.844301 AACGCAAAGGCAAAATAAGAATG 57.156 34.783 0.00 0.00 41.24 2.67
5348 6942 4.881920 ACGCAAAGGCAAAATAAGAATGT 58.118 34.783 0.00 0.00 41.24 2.71
5349 6943 6.019779 ACGCAAAGGCAAAATAAGAATGTA 57.980 33.333 0.00 0.00 41.24 2.29
5350 6944 6.630071 ACGCAAAGGCAAAATAAGAATGTAT 58.370 32.000 0.00 0.00 41.24 2.29
5351 6945 7.767261 ACGCAAAGGCAAAATAAGAATGTATA 58.233 30.769 0.00 0.00 41.24 1.47
5352 6946 7.700656 ACGCAAAGGCAAAATAAGAATGTATAC 59.299 33.333 0.00 0.00 41.24 1.47
5353 6947 7.700234 CGCAAAGGCAAAATAAGAATGTATACA 59.300 33.333 8.27 8.27 41.24 2.29
5354 6948 8.807581 GCAAAGGCAAAATAAGAATGTATACAC 58.192 33.333 7.96 0.00 40.72 2.90
5355 6949 9.853555 CAAAGGCAAAATAAGAATGTATACACA 57.146 29.630 7.96 0.00 39.52 3.72
5358 6952 9.461312 AGGCAAAATAAGAATGTATACACAAGA 57.539 29.630 7.96 0.00 38.42 3.02
5359 6953 9.503427 GGCAAAATAAGAATGTATACACAAGAC 57.497 33.333 7.96 0.00 38.42 3.01
5438 7032 9.531942 TTCGATTTATTCATTTTCAATCATGGG 57.468 29.630 0.00 0.00 0.00 4.00
5439 7033 7.652909 TCGATTTATTCATTTTCAATCATGGGC 59.347 33.333 0.00 0.00 0.00 5.36
5440 7034 7.438757 CGATTTATTCATTTTCAATCATGGGCA 59.561 33.333 0.00 0.00 0.00 5.36
5441 7035 8.671384 ATTTATTCATTTTCAATCATGGGCAG 57.329 30.769 0.00 0.00 0.00 4.85
5442 7036 4.475051 TTCATTTTCAATCATGGGCAGG 57.525 40.909 0.00 0.00 0.00 4.85
5443 7037 3.710724 TCATTTTCAATCATGGGCAGGA 58.289 40.909 0.00 0.00 0.00 3.86
5444 7038 3.448301 TCATTTTCAATCATGGGCAGGAC 59.552 43.478 0.00 0.00 0.00 3.85
5445 7039 2.601240 TTTCAATCATGGGCAGGACA 57.399 45.000 0.00 0.00 0.00 4.02
5446 7040 2.601240 TTCAATCATGGGCAGGACAA 57.399 45.000 0.00 0.00 0.00 3.18
5447 7041 1.838112 TCAATCATGGGCAGGACAAC 58.162 50.000 0.00 0.00 0.00 3.32
5448 7042 1.075212 TCAATCATGGGCAGGACAACA 59.925 47.619 0.00 0.00 0.00 3.33
5449 7043 1.894466 CAATCATGGGCAGGACAACAA 59.106 47.619 0.00 0.00 0.00 2.83
5450 7044 2.299582 CAATCATGGGCAGGACAACAAA 59.700 45.455 0.00 0.00 0.00 2.83
5451 7045 1.327303 TCATGGGCAGGACAACAAAC 58.673 50.000 0.00 0.00 0.00 2.93
5452 7046 1.039068 CATGGGCAGGACAACAAACA 58.961 50.000 0.00 0.00 0.00 2.83
5453 7047 1.039856 ATGGGCAGGACAACAAACAC 58.960 50.000 0.00 0.00 0.00 3.32
5454 7048 1.040339 TGGGCAGGACAACAAACACC 61.040 55.000 0.00 0.00 0.00 4.16
5455 7049 1.040339 GGGCAGGACAACAAACACCA 61.040 55.000 0.00 0.00 0.00 4.17
5456 7050 0.820871 GGCAGGACAACAAACACCAA 59.179 50.000 0.00 0.00 0.00 3.67
5457 7051 1.205893 GGCAGGACAACAAACACCAAA 59.794 47.619 0.00 0.00 0.00 3.28
5458 7052 2.354203 GGCAGGACAACAAACACCAAAA 60.354 45.455 0.00 0.00 0.00 2.44
5459 7053 3.330267 GCAGGACAACAAACACCAAAAA 58.670 40.909 0.00 0.00 0.00 1.94
5492 7086 7.865706 AATTACAATCAGAACCATAGACCAC 57.134 36.000 0.00 0.00 0.00 4.16
5493 7087 4.222124 ACAATCAGAACCATAGACCACC 57.778 45.455 0.00 0.00 0.00 4.61
5494 7088 3.846588 ACAATCAGAACCATAGACCACCT 59.153 43.478 0.00 0.00 0.00 4.00
5495 7089 5.030147 ACAATCAGAACCATAGACCACCTA 58.970 41.667 0.00 0.00 0.00 3.08
5496 7090 5.129485 ACAATCAGAACCATAGACCACCTAG 59.871 44.000 0.00 0.00 0.00 3.02
5497 7091 3.031736 TCAGAACCATAGACCACCTAGC 58.968 50.000 0.00 0.00 0.00 3.42
5498 7092 2.032620 AGAACCATAGACCACCTAGCG 58.967 52.381 0.00 0.00 0.00 4.26
5499 7093 2.029623 GAACCATAGACCACCTAGCGA 58.970 52.381 0.00 0.00 0.00 4.93
5500 7094 1.400737 ACCATAGACCACCTAGCGAC 58.599 55.000 0.00 0.00 0.00 5.19
5501 7095 1.341679 ACCATAGACCACCTAGCGACA 60.342 52.381 0.00 0.00 0.00 4.35
5502 7096 1.754803 CCATAGACCACCTAGCGACAA 59.245 52.381 0.00 0.00 0.00 3.18
5503 7097 2.223829 CCATAGACCACCTAGCGACAAG 60.224 54.545 0.00 0.00 0.00 3.16
5504 7098 2.211250 TAGACCACCTAGCGACAAGT 57.789 50.000 0.00 0.00 0.00 3.16
5505 7099 2.211250 AGACCACCTAGCGACAAGTA 57.789 50.000 0.00 0.00 0.00 2.24
5506 7100 1.817447 AGACCACCTAGCGACAAGTAC 59.183 52.381 0.00 0.00 0.00 2.73
5507 7101 1.542915 GACCACCTAGCGACAAGTACA 59.457 52.381 0.00 0.00 0.00 2.90
5508 7102 1.965643 ACCACCTAGCGACAAGTACAA 59.034 47.619 0.00 0.00 0.00 2.41
5509 7103 2.029290 ACCACCTAGCGACAAGTACAAG 60.029 50.000 0.00 0.00 0.00 3.16
5510 7104 1.993370 CACCTAGCGACAAGTACAAGC 59.007 52.381 0.00 0.00 0.00 4.01
5511 7105 1.616865 ACCTAGCGACAAGTACAAGCA 59.383 47.619 0.00 0.00 0.00 3.91
5512 7106 1.993370 CCTAGCGACAAGTACAAGCAC 59.007 52.381 0.00 0.00 0.00 4.40
5513 7107 2.352814 CCTAGCGACAAGTACAAGCACT 60.353 50.000 0.00 0.00 0.00 4.40
5514 7108 1.502231 AGCGACAAGTACAAGCACTG 58.498 50.000 0.00 0.00 0.00 3.66
5515 7109 1.068588 AGCGACAAGTACAAGCACTGA 59.931 47.619 0.00 0.00 0.00 3.41
5516 7110 1.864711 GCGACAAGTACAAGCACTGAA 59.135 47.619 0.00 0.00 0.00 3.02
5517 7111 2.096713 GCGACAAGTACAAGCACTGAAG 60.097 50.000 0.00 0.00 0.00 3.02
5518 7112 2.096713 CGACAAGTACAAGCACTGAAGC 60.097 50.000 0.00 0.00 0.00 3.86
5519 7113 1.867233 ACAAGTACAAGCACTGAAGCG 59.133 47.619 0.00 0.00 40.15 4.68
5520 7114 2.135139 CAAGTACAAGCACTGAAGCGA 58.865 47.619 0.00 0.00 40.15 4.93
5521 7115 2.071688 AGTACAAGCACTGAAGCGAG 57.928 50.000 0.00 0.00 40.15 5.03
5522 7116 0.440371 GTACAAGCACTGAAGCGAGC 59.560 55.000 0.00 0.00 40.15 5.03
5523 7117 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
5524 7118 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
5525 7119 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
5526 7120 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
5527 7121 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
5528 7122 1.080501 CACTGAAGCGAGCCGAAGA 60.081 57.895 0.00 0.00 0.00 2.87
5529 7123 0.459237 CACTGAAGCGAGCCGAAGAT 60.459 55.000 0.00 0.00 0.00 2.40
5530 7124 0.459237 ACTGAAGCGAGCCGAAGATG 60.459 55.000 0.00 0.00 0.00 2.90
5531 7125 0.459237 CTGAAGCGAGCCGAAGATGT 60.459 55.000 0.00 0.00 0.00 3.06
5532 7126 0.737367 TGAAGCGAGCCGAAGATGTG 60.737 55.000 0.00 0.00 0.00 3.21
5533 7127 2.029904 GAAGCGAGCCGAAGATGTGC 62.030 60.000 0.00 0.00 0.00 4.57
5534 7128 3.567797 GCGAGCCGAAGATGTGCC 61.568 66.667 0.00 0.00 0.00 5.01
5535 7129 3.257561 CGAGCCGAAGATGTGCCG 61.258 66.667 0.00 0.00 0.00 5.69
5536 7130 3.567797 GAGCCGAAGATGTGCCGC 61.568 66.667 0.00 0.00 0.00 6.53
5540 7134 3.554692 CGAAGATGTGCCGCCGTC 61.555 66.667 0.00 0.00 0.00 4.79
5541 7135 2.434185 GAAGATGTGCCGCCGTCA 60.434 61.111 0.00 0.00 0.00 4.35
5542 7136 1.815421 GAAGATGTGCCGCCGTCAT 60.815 57.895 0.00 0.00 0.00 3.06
5543 7137 1.766143 GAAGATGTGCCGCCGTCATC 61.766 60.000 10.39 10.39 38.43 2.92
5544 7138 3.630148 GATGTGCCGCCGTCATCG 61.630 66.667 5.12 0.00 0.00 3.84
5554 7148 4.570663 CGTCATCGCCCCTCCGTC 62.571 72.222 0.00 0.00 0.00 4.79
5555 7149 4.570663 GTCATCGCCCCTCCGTCG 62.571 72.222 0.00 0.00 0.00 5.12
5573 7167 3.382111 CGGGAGCTGGACAGAACT 58.618 61.111 3.00 0.00 0.00 3.01
5574 7168 1.674057 CGGGAGCTGGACAGAACTT 59.326 57.895 3.00 0.00 0.00 2.66
5575 7169 0.671781 CGGGAGCTGGACAGAACTTG 60.672 60.000 3.00 0.00 0.00 3.16
5576 7170 0.398318 GGGAGCTGGACAGAACTTGT 59.602 55.000 3.00 0.00 44.55 3.16
5577 7171 1.202818 GGGAGCTGGACAGAACTTGTT 60.203 52.381 3.00 0.00 41.05 2.83
5578 7172 2.147150 GGAGCTGGACAGAACTTGTTC 58.853 52.381 3.00 5.44 41.05 3.18
5579 7173 2.224402 GGAGCTGGACAGAACTTGTTCT 60.224 50.000 9.93 9.93 41.05 3.01
5580 7174 3.006967 GGAGCTGGACAGAACTTGTTCTA 59.993 47.826 14.65 0.52 41.05 2.10
5581 7175 4.241681 GAGCTGGACAGAACTTGTTCTAG 58.758 47.826 14.65 10.19 41.05 2.43
5582 7176 3.643792 AGCTGGACAGAACTTGTTCTAGT 59.356 43.478 14.65 14.23 41.05 2.57
5583 7177 4.833380 AGCTGGACAGAACTTGTTCTAGTA 59.167 41.667 14.65 3.24 41.05 1.82
5584 7178 4.924462 GCTGGACAGAACTTGTTCTAGTAC 59.076 45.833 14.65 14.94 41.05 2.73
5585 7179 5.509163 GCTGGACAGAACTTGTTCTAGTACA 60.509 44.000 14.65 17.73 41.05 2.90
5586 7180 5.839621 TGGACAGAACTTGTTCTAGTACAC 58.160 41.667 14.65 9.93 41.05 2.90
5587 7181 5.361571 TGGACAGAACTTGTTCTAGTACACA 59.638 40.000 14.65 11.65 41.05 3.72
5588 7182 5.921408 GGACAGAACTTGTTCTAGTACACAG 59.079 44.000 14.65 6.05 41.05 3.66
5589 7183 6.461231 GGACAGAACTTGTTCTAGTACACAGT 60.461 42.308 14.65 6.60 41.05 3.55
5590 7184 6.505272 ACAGAACTTGTTCTAGTACACAGTC 58.495 40.000 14.65 0.42 36.31 3.51
5591 7185 6.321690 ACAGAACTTGTTCTAGTACACAGTCT 59.678 38.462 14.65 2.59 36.31 3.24
5592 7186 6.638873 CAGAACTTGTTCTAGTACACAGTCTG 59.361 42.308 14.65 15.19 0.00 3.51
5593 7187 6.546403 AGAACTTGTTCTAGTACACAGTCTGA 59.454 38.462 13.62 0.00 0.00 3.27
5594 7188 6.710597 ACTTGTTCTAGTACACAGTCTGAA 57.289 37.500 6.91 0.00 0.00 3.02
5595 7189 7.108841 ACTTGTTCTAGTACACAGTCTGAAA 57.891 36.000 6.91 0.00 0.00 2.69
5596 7190 7.203910 ACTTGTTCTAGTACACAGTCTGAAAG 58.796 38.462 6.91 0.00 0.00 2.62
5597 7191 6.710597 TGTTCTAGTACACAGTCTGAAAGT 57.289 37.500 6.91 4.85 33.76 2.66
5598 7192 7.108841 TGTTCTAGTACACAGTCTGAAAGTT 57.891 36.000 6.91 0.00 33.76 2.66
5599 7193 8.229253 TGTTCTAGTACACAGTCTGAAAGTTA 57.771 34.615 6.91 0.00 33.76 2.24
5600 7194 8.689061 TGTTCTAGTACACAGTCTGAAAGTTAA 58.311 33.333 6.91 0.00 33.76 2.01
5601 7195 8.966194 GTTCTAGTACACAGTCTGAAAGTTAAC 58.034 37.037 6.91 0.00 33.76 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 5.154418 ACCATCCCCTCATCAAAAGAAAAA 58.846 37.500 0.00 0.00 0.00 1.94
61 62 4.750941 ACCATCCCCTCATCAAAAGAAAA 58.249 39.130 0.00 0.00 0.00 2.29
62 63 4.402616 ACCATCCCCTCATCAAAAGAAA 57.597 40.909 0.00 0.00 0.00 2.52
63 64 4.625324 CGTACCATCCCCTCATCAAAAGAA 60.625 45.833 0.00 0.00 0.00 2.52
64 65 3.118408 CGTACCATCCCCTCATCAAAAGA 60.118 47.826 0.00 0.00 0.00 2.52
65 66 3.118408 TCGTACCATCCCCTCATCAAAAG 60.118 47.826 0.00 0.00 0.00 2.27
66 67 2.841266 TCGTACCATCCCCTCATCAAAA 59.159 45.455 0.00 0.00 0.00 2.44
67 68 2.473070 TCGTACCATCCCCTCATCAAA 58.527 47.619 0.00 0.00 0.00 2.69
68 69 2.168458 TCGTACCATCCCCTCATCAA 57.832 50.000 0.00 0.00 0.00 2.57
69 70 2.368548 CAATCGTACCATCCCCTCATCA 59.631 50.000 0.00 0.00 0.00 3.07
70 71 2.632996 TCAATCGTACCATCCCCTCATC 59.367 50.000 0.00 0.00 0.00 2.92
71 72 2.689658 TCAATCGTACCATCCCCTCAT 58.310 47.619 0.00 0.00 0.00 2.90
72 73 2.168458 TCAATCGTACCATCCCCTCA 57.832 50.000 0.00 0.00 0.00 3.86
73 74 2.900546 AGATCAATCGTACCATCCCCTC 59.099 50.000 0.00 0.00 0.00 4.30
74 75 2.977808 AGATCAATCGTACCATCCCCT 58.022 47.619 0.00 0.00 0.00 4.79
75 76 3.576982 TGTAGATCAATCGTACCATCCCC 59.423 47.826 0.00 0.00 0.00 4.81
96 97 0.250467 CACCTTGTCCACCCTGTCTG 60.250 60.000 0.00 0.00 0.00 3.51
247 814 4.394712 CCCAGTGTCCCCTGCGTC 62.395 72.222 0.00 0.00 0.00 5.19
491 1153 4.777896 AGTGGATAGCTTACCTCAACTCAA 59.222 41.667 0.00 0.00 0.00 3.02
492 1154 4.160439 CAGTGGATAGCTTACCTCAACTCA 59.840 45.833 0.00 0.00 0.00 3.41
493 1155 4.688021 CAGTGGATAGCTTACCTCAACTC 58.312 47.826 0.00 0.00 0.00 3.01
494 1156 3.118592 GCAGTGGATAGCTTACCTCAACT 60.119 47.826 0.00 0.00 0.00 3.16
495 1157 3.198872 GCAGTGGATAGCTTACCTCAAC 58.801 50.000 0.00 0.00 0.00 3.18
506 1168 2.176273 GCAGTGCCGCAGTGGATAG 61.176 63.158 25.90 4.44 42.00 2.08
558 1220 4.023963 CCTGATTGATGCAATAGACAGCAG 60.024 45.833 0.00 0.00 44.94 4.24
591 1253 9.132521 GACTGTTTAGTTAACGCAATAGACTTA 57.867 33.333 17.55 0.00 39.72 2.24
615 1277 3.024547 TGTACTGGATAGCAGGTCTGAC 58.975 50.000 0.00 0.00 0.00 3.51
649 1313 7.807433 GCAAAATAATGTGTATGTGTTCACAGA 59.193 33.333 11.24 4.08 45.56 3.41
711 1392 4.100529 GGCGAACAATCAGACAAATCATG 58.899 43.478 0.00 0.00 0.00 3.07
745 1428 6.097356 TGTTAAAGTGGCATCGTTAGAGTAG 58.903 40.000 0.00 0.00 0.00 2.57
845 1538 7.260558 TGGTCTTACAGACATACTAAGATCG 57.739 40.000 6.25 0.00 46.79 3.69
969 1666 2.242965 TCGTACCCAGTGGAGGATCTAA 59.757 50.000 11.95 0.00 33.73 2.10
1873 2578 7.086685 TCTTAACTCTACCCTTGACCAAAAT 57.913 36.000 0.00 0.00 0.00 1.82
2053 2962 7.570507 CGCTGATTTAGTACAAAGTTAGTGCAA 60.571 37.037 0.00 0.00 0.00 4.08
2142 3052 8.812513 TTCTGTCAATGATCTGGATTACAAAT 57.187 30.769 0.00 0.00 0.00 2.32
2147 3057 7.050377 GTCCTTTCTGTCAATGATCTGGATTA 58.950 38.462 0.00 0.00 0.00 1.75
2387 3297 6.640518 AGTGTCTCAACTTGTCTCAACTTTA 58.359 36.000 0.00 0.00 0.00 1.85
2388 3298 5.491982 AGTGTCTCAACTTGTCTCAACTTT 58.508 37.500 0.00 0.00 0.00 2.66
2389 3299 5.091261 AGTGTCTCAACTTGTCTCAACTT 57.909 39.130 0.00 0.00 0.00 2.66
2390 3300 4.744795 AGTGTCTCAACTTGTCTCAACT 57.255 40.909 0.00 0.00 0.00 3.16
2391 3301 7.484035 AATAAGTGTCTCAACTTGTCTCAAC 57.516 36.000 0.00 0.00 40.58 3.18
2393 3303 7.012327 CCAAAATAAGTGTCTCAACTTGTCTCA 59.988 37.037 0.00 0.00 40.58 3.27
2394 3304 7.355778 CCAAAATAAGTGTCTCAACTTGTCTC 58.644 38.462 0.00 0.00 40.58 3.36
2395 3305 6.263168 CCCAAAATAAGTGTCTCAACTTGTCT 59.737 38.462 0.00 0.00 40.58 3.41
2396 3306 6.438763 CCCAAAATAAGTGTCTCAACTTGTC 58.561 40.000 0.00 0.00 40.58 3.18
2397 3307 5.301805 CCCCAAAATAAGTGTCTCAACTTGT 59.698 40.000 0.00 0.00 40.58 3.16
2421 3719 3.639094 TGCTTTCTATCTACTCCCTCTGC 59.361 47.826 0.00 0.00 0.00 4.26
2775 4086 6.212888 ACCTTCAGCAATTCATAATGGAAC 57.787 37.500 0.00 0.00 0.00 3.62
3185 4496 6.672147 ACTACAGCTGAAACATTTGCTAAAG 58.328 36.000 23.35 0.00 34.10 1.85
3357 4668 1.753073 CTGTACGTACCCCTTACCCAG 59.247 57.143 22.43 6.47 0.00 4.45
3418 4729 7.072263 AGGACTAACTGCTAAATGCTATCAT 57.928 36.000 0.00 0.00 43.37 2.45
3651 4962 4.887071 ACTAGTCTACTGAAGATGCCTGAG 59.113 45.833 0.00 0.00 36.36 3.35
3729 5040 5.411361 CGTGAATGATTCCAAAGGTTACTGA 59.589 40.000 2.26 0.00 0.00 3.41
3971 5283 0.104487 TTGCATGCACCAACCAGTTG 59.896 50.000 22.58 3.47 40.13 3.16
4104 5416 1.098869 TTTTGCTGAACTCAACGGCA 58.901 45.000 0.00 0.00 45.96 5.69
4107 5419 1.971962 GCGATTTTGCTGAACTCAACG 59.028 47.619 0.00 0.00 0.00 4.10
4264 5580 1.401552 CACACACCACAACACCAGAAG 59.598 52.381 0.00 0.00 0.00 2.85
4271 5587 1.318158 TGCATGCACACACCACAACA 61.318 50.000 18.46 0.00 0.00 3.33
4279 5595 3.025262 ACCATCAATATGCATGCACACA 58.975 40.909 25.37 11.91 0.00 3.72
4284 5600 2.889045 ACAGGACCATCAATATGCATGC 59.111 45.455 11.82 11.82 0.00 4.06
4380 5698 6.098695 GGTACCACACCTACATATTGAGGTAA 59.901 42.308 7.15 0.00 44.54 2.85
4613 6057 4.694233 CCAGCAGCTCACGCCAGT 62.694 66.667 0.00 0.00 36.60 4.00
4621 6065 1.194772 GACACGTTTAACCAGCAGCTC 59.805 52.381 0.00 0.00 0.00 4.09
4785 6339 1.322442 GCTGCTGAACTGGGAAGTTT 58.678 50.000 0.00 0.00 31.35 2.66
4786 6340 0.183492 TGCTGCTGAACTGGGAAGTT 59.817 50.000 0.00 0.00 34.29 2.66
4787 6341 0.536006 GTGCTGCTGAACTGGGAAGT 60.536 55.000 0.00 0.00 0.00 3.01
4788 6342 1.239968 GGTGCTGCTGAACTGGGAAG 61.240 60.000 0.00 0.00 0.00 3.46
4789 6343 1.228245 GGTGCTGCTGAACTGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
4790 6344 2.149383 AGGTGCTGCTGAACTGGGA 61.149 57.895 0.00 0.00 0.00 4.37
4791 6345 1.970114 CAGGTGCTGCTGAACTGGG 60.970 63.158 0.00 0.00 0.00 4.45
4792 6346 0.035317 TACAGGTGCTGCTGAACTGG 59.965 55.000 9.48 0.00 34.37 4.00
4793 6347 1.151668 GTACAGGTGCTGCTGAACTG 58.848 55.000 0.00 1.99 34.37 3.16
4794 6348 0.035458 GGTACAGGTGCTGCTGAACT 59.965 55.000 0.00 0.00 34.37 3.01
4795 6349 0.035458 AGGTACAGGTGCTGCTGAAC 59.965 55.000 0.00 0.00 34.37 3.18
4796 6350 0.764890 AAGGTACAGGTGCTGCTGAA 59.235 50.000 0.00 0.00 34.37 3.02
4797 6351 0.035317 CAAGGTACAGGTGCTGCTGA 59.965 55.000 0.00 0.00 34.37 4.26
4798 6352 0.957395 CCAAGGTACAGGTGCTGCTG 60.957 60.000 0.00 0.00 34.37 4.41
4799 6353 1.376466 CCAAGGTACAGGTGCTGCT 59.624 57.895 0.00 0.00 34.37 4.24
4800 6354 0.955919 GACCAAGGTACAGGTGCTGC 60.956 60.000 8.41 0.00 39.07 5.25
4801 6355 0.687354 AGACCAAGGTACAGGTGCTG 59.313 55.000 8.41 0.00 39.07 4.41
4802 6356 0.977395 GAGACCAAGGTACAGGTGCT 59.023 55.000 8.41 6.03 39.07 4.40
4803 6357 0.389948 CGAGACCAAGGTACAGGTGC 60.390 60.000 8.41 1.20 39.07 5.01
4804 6358 0.966920 ACGAGACCAAGGTACAGGTG 59.033 55.000 8.41 0.00 39.07 4.00
4805 6359 1.254954 GACGAGACCAAGGTACAGGT 58.745 55.000 3.82 3.82 41.60 4.00
4806 6360 0.170561 CGACGAGACCAAGGTACAGG 59.829 60.000 0.00 0.00 0.00 4.00
4807 6361 0.879765 ACGACGAGACCAAGGTACAG 59.120 55.000 0.00 0.00 0.00 2.74
4808 6362 0.877071 GACGACGAGACCAAGGTACA 59.123 55.000 0.00 0.00 0.00 2.90
4809 6363 0.179205 CGACGACGAGACCAAGGTAC 60.179 60.000 0.00 0.00 42.66 3.34
4810 6364 1.300971 CCGACGACGAGACCAAGGTA 61.301 60.000 9.28 0.00 42.66 3.08
4811 6365 2.623915 CCGACGACGAGACCAAGGT 61.624 63.158 9.28 0.00 42.66 3.50
4812 6366 2.178521 CCGACGACGAGACCAAGG 59.821 66.667 9.28 0.00 42.66 3.61
4813 6367 2.178521 CCCGACGACGAGACCAAG 59.821 66.667 9.28 0.00 42.66 3.61
4814 6368 3.367743 CCCCGACGACGAGACCAA 61.368 66.667 9.28 0.00 42.66 3.67
4815 6369 4.648626 ACCCCGACGACGAGACCA 62.649 66.667 9.28 0.00 42.66 4.02
4816 6370 3.808656 GACCCCGACGACGAGACC 61.809 72.222 9.28 0.00 42.66 3.85
4817 6371 2.745492 AGACCCCGACGACGAGAC 60.745 66.667 9.28 0.47 42.66 3.36
4818 6372 2.171209 TACAGACCCCGACGACGAGA 62.171 60.000 9.28 0.00 42.66 4.04
4819 6373 1.094073 ATACAGACCCCGACGACGAG 61.094 60.000 9.28 2.21 42.66 4.18
4820 6374 0.677731 AATACAGACCCCGACGACGA 60.678 55.000 9.28 0.00 42.66 4.20
4821 6375 0.171903 AAATACAGACCCCGACGACG 59.828 55.000 0.00 0.00 39.43 5.12
4822 6376 1.475682 AGAAATACAGACCCCGACGAC 59.524 52.381 0.00 0.00 0.00 4.34
4823 6377 1.475280 CAGAAATACAGACCCCGACGA 59.525 52.381 0.00 0.00 0.00 4.20
4824 6378 1.203994 ACAGAAATACAGACCCCGACG 59.796 52.381 0.00 0.00 0.00 5.12
4825 6379 2.618053 CACAGAAATACAGACCCCGAC 58.382 52.381 0.00 0.00 0.00 4.79
4826 6380 1.066430 GCACAGAAATACAGACCCCGA 60.066 52.381 0.00 0.00 0.00 5.14
4827 6381 1.066143 AGCACAGAAATACAGACCCCG 60.066 52.381 0.00 0.00 0.00 5.73
4828 6382 2.789409 AGCACAGAAATACAGACCCC 57.211 50.000 0.00 0.00 0.00 4.95
4829 6383 2.673368 CGAAGCACAGAAATACAGACCC 59.327 50.000 0.00 0.00 0.00 4.46
4830 6384 3.999229 CGAAGCACAGAAATACAGACC 57.001 47.619 0.00 0.00 0.00 3.85
4848 6402 1.025113 CAGACCGTCCACTCTAGCGA 61.025 60.000 0.00 0.00 0.00 4.93
4851 6405 0.888619 TTGCAGACCGTCCACTCTAG 59.111 55.000 0.00 0.00 0.00 2.43
4865 6419 2.631267 GGGCCCATTACAAAATTGCAG 58.369 47.619 19.95 0.00 0.00 4.41
4878 6432 2.508407 CTAAACGGTTGGGGGCCCAT 62.508 60.000 26.86 0.00 46.64 4.00
4883 6439 2.748647 CGGCTAAACGGTTGGGGG 60.749 66.667 0.00 0.00 0.00 5.40
4910 6466 0.812412 ACACCCGACAACTGGAAACG 60.812 55.000 0.00 0.00 0.00 3.60
4927 6483 3.480679 CTGCTGGTCAGTGGCCACA 62.481 63.158 36.39 15.71 38.02 4.17
4991 6547 0.818296 AGCGTCCTATCTGTGGTGAC 59.182 55.000 0.00 0.00 0.00 3.67
5002 6558 3.000819 CCACCCACCAGCGTCCTA 61.001 66.667 0.00 0.00 0.00 2.94
5037 6600 2.604174 CCTTTGCACCACGTCCGAC 61.604 63.158 0.00 0.00 0.00 4.79
5040 6603 0.605319 TCATCCTTTGCACCACGTCC 60.605 55.000 0.00 0.00 0.00 4.79
5078 6652 1.134367 GTACGTCTCTGCTGTATGCCA 59.866 52.381 0.00 0.00 42.00 4.92
5087 6661 1.272781 GACATGCTGTACGTCTCTGC 58.727 55.000 12.90 12.90 0.00 4.26
5088 6662 1.135660 ACGACATGCTGTACGTCTCTG 60.136 52.381 0.00 0.00 31.95 3.35
5089 6663 1.135660 CACGACATGCTGTACGTCTCT 60.136 52.381 0.00 0.00 34.00 3.10
5090 6664 1.260206 CACGACATGCTGTACGTCTC 58.740 55.000 0.00 0.00 34.00 3.36
5094 6668 0.362179 CGAACACGACATGCTGTACG 59.638 55.000 0.00 0.00 0.00 3.67
5095 6669 1.385743 GACGAACACGACATGCTGTAC 59.614 52.381 0.00 0.00 0.00 2.90
5101 6683 2.092291 CCCGGACGAACACGACATG 61.092 63.158 0.73 0.00 0.00 3.21
5136 6718 2.532256 GCTCGCTCGTAGCCTCGTA 61.532 63.158 2.00 0.00 38.18 3.43
5137 6719 3.878519 GCTCGCTCGTAGCCTCGT 61.879 66.667 2.00 0.00 38.18 4.18
5138 6720 4.947278 CGCTCGCTCGTAGCCTCG 62.947 72.222 2.00 0.00 38.18 4.63
5143 6725 4.516135 TCACGCGCTCGCTCGTAG 62.516 66.667 5.73 2.73 35.54 3.51
5150 6732 4.126390 CAGCAAGTCACGCGCTCG 62.126 66.667 5.73 0.00 42.43 5.03
5165 6747 3.503363 TCAAACAGCTGCTGATTTACCAG 59.497 43.478 34.28 16.66 35.18 4.00
5167 6749 4.708726 ATCAAACAGCTGCTGATTTACC 57.291 40.909 34.28 0.00 35.18 2.85
5168 6750 5.346822 CCAAATCAAACAGCTGCTGATTTAC 59.653 40.000 34.48 0.00 44.17 2.01
5169 6751 5.243507 TCCAAATCAAACAGCTGCTGATTTA 59.756 36.000 34.48 25.57 44.17 1.40
5170 6752 4.039488 TCCAAATCAAACAGCTGCTGATTT 59.961 37.500 32.15 32.15 45.92 2.17
5201 6783 2.415776 GGGTCAATCGGTAAACAACGA 58.584 47.619 0.00 0.00 43.85 3.85
5202 6784 1.465777 GGGGTCAATCGGTAAACAACG 59.534 52.381 0.00 0.00 0.00 4.10
5233 6821 2.635714 GTTCGGACATTCGGGGTAATT 58.364 47.619 0.00 0.00 0.00 1.40
5261 6849 2.294512 TCTCGGATGACAAGATCGATGG 59.705 50.000 0.54 0.00 0.00 3.51
5278 6866 0.591659 TGTGAACCAGACGAGTCTCG 59.408 55.000 20.57 20.57 46.93 4.04
5282 6870 5.181245 CCAAAATTATGTGAACCAGACGAGT 59.819 40.000 0.00 0.00 0.00 4.18
5285 6873 5.621197 TCCAAAATTATGTGAACCAGACG 57.379 39.130 0.00 0.00 0.00 4.18
5292 6880 8.954950 TTCTTTTGCTTCCAAAATTATGTGAA 57.045 26.923 2.50 0.35 46.52 3.18
5299 6887 5.939447 TCCCATTCTTTTGCTTCCAAAATT 58.061 33.333 2.50 0.00 46.52 1.82
5303 6891 5.365021 TTTTCCCATTCTTTTGCTTCCAA 57.635 34.783 0.00 0.00 0.00 3.53
5305 6893 4.211164 CGTTTTTCCCATTCTTTTGCTTCC 59.789 41.667 0.00 0.00 0.00 3.46
5307 6895 3.559655 GCGTTTTTCCCATTCTTTTGCTT 59.440 39.130 0.00 0.00 0.00 3.91
5308 6896 3.130633 GCGTTTTTCCCATTCTTTTGCT 58.869 40.909 0.00 0.00 0.00 3.91
5309 6897 2.869192 TGCGTTTTTCCCATTCTTTTGC 59.131 40.909 0.00 0.00 0.00 3.68
5319 6913 1.657822 TTTGCCTTTGCGTTTTTCCC 58.342 45.000 0.00 0.00 41.78 3.97
5321 6915 6.280537 TCTTATTTTGCCTTTGCGTTTTTC 57.719 33.333 0.00 0.00 41.78 2.29
5412 7006 9.531942 CCCATGATTGAAAATGAATAAATCGAA 57.468 29.630 0.00 0.00 31.33 3.71
5413 7007 7.652909 GCCCATGATTGAAAATGAATAAATCGA 59.347 33.333 0.00 0.00 31.33 3.59
5414 7008 7.438757 TGCCCATGATTGAAAATGAATAAATCG 59.561 33.333 0.00 0.00 31.33 3.34
5415 7009 8.665643 TGCCCATGATTGAAAATGAATAAATC 57.334 30.769 0.00 0.00 0.00 2.17
5416 7010 7.717875 CCTGCCCATGATTGAAAATGAATAAAT 59.282 33.333 0.00 0.00 0.00 1.40
5417 7011 7.049133 CCTGCCCATGATTGAAAATGAATAAA 58.951 34.615 0.00 0.00 0.00 1.40
5418 7012 6.383436 TCCTGCCCATGATTGAAAATGAATAA 59.617 34.615 0.00 0.00 0.00 1.40
5419 7013 5.898397 TCCTGCCCATGATTGAAAATGAATA 59.102 36.000 0.00 0.00 0.00 1.75
5420 7014 4.717778 TCCTGCCCATGATTGAAAATGAAT 59.282 37.500 0.00 0.00 0.00 2.57
5421 7015 4.081531 GTCCTGCCCATGATTGAAAATGAA 60.082 41.667 0.00 0.00 0.00 2.57
5422 7016 3.448301 GTCCTGCCCATGATTGAAAATGA 59.552 43.478 0.00 0.00 0.00 2.57
5423 7017 3.196039 TGTCCTGCCCATGATTGAAAATG 59.804 43.478 0.00 0.00 0.00 2.32
5424 7018 3.443052 TGTCCTGCCCATGATTGAAAAT 58.557 40.909 0.00 0.00 0.00 1.82
5425 7019 2.886913 TGTCCTGCCCATGATTGAAAA 58.113 42.857 0.00 0.00 0.00 2.29
5426 7020 2.562298 GTTGTCCTGCCCATGATTGAAA 59.438 45.455 0.00 0.00 0.00 2.69
5427 7021 2.170166 GTTGTCCTGCCCATGATTGAA 58.830 47.619 0.00 0.00 0.00 2.69
5428 7022 1.075212 TGTTGTCCTGCCCATGATTGA 59.925 47.619 0.00 0.00 0.00 2.57
5429 7023 1.548081 TGTTGTCCTGCCCATGATTG 58.452 50.000 0.00 0.00 0.00 2.67
5430 7024 2.299867 GTTTGTTGTCCTGCCCATGATT 59.700 45.455 0.00 0.00 0.00 2.57
5431 7025 1.895131 GTTTGTTGTCCTGCCCATGAT 59.105 47.619 0.00 0.00 0.00 2.45
5432 7026 1.327303 GTTTGTTGTCCTGCCCATGA 58.673 50.000 0.00 0.00 0.00 3.07
5433 7027 1.039068 TGTTTGTTGTCCTGCCCATG 58.961 50.000 0.00 0.00 0.00 3.66
5434 7028 1.039856 GTGTTTGTTGTCCTGCCCAT 58.960 50.000 0.00 0.00 0.00 4.00
5435 7029 1.040339 GGTGTTTGTTGTCCTGCCCA 61.040 55.000 0.00 0.00 0.00 5.36
5436 7030 1.040339 TGGTGTTTGTTGTCCTGCCC 61.040 55.000 0.00 0.00 0.00 5.36
5437 7031 0.820871 TTGGTGTTTGTTGTCCTGCC 59.179 50.000 0.00 0.00 0.00 4.85
5438 7032 2.663826 TTTGGTGTTTGTTGTCCTGC 57.336 45.000 0.00 0.00 0.00 4.85
5466 7060 9.561069 GTGGTCTATGGTTCTGATTGTAATTAT 57.439 33.333 0.00 0.00 0.00 1.28
5467 7061 7.990886 GGTGGTCTATGGTTCTGATTGTAATTA 59.009 37.037 0.00 0.00 0.00 1.40
5468 7062 6.828785 GGTGGTCTATGGTTCTGATTGTAATT 59.171 38.462 0.00 0.00 0.00 1.40
5469 7063 6.158695 AGGTGGTCTATGGTTCTGATTGTAAT 59.841 38.462 0.00 0.00 0.00 1.89
5470 7064 5.487488 AGGTGGTCTATGGTTCTGATTGTAA 59.513 40.000 0.00 0.00 0.00 2.41
5471 7065 5.030147 AGGTGGTCTATGGTTCTGATTGTA 58.970 41.667 0.00 0.00 0.00 2.41
5472 7066 3.846588 AGGTGGTCTATGGTTCTGATTGT 59.153 43.478 0.00 0.00 0.00 2.71
5473 7067 4.494091 AGGTGGTCTATGGTTCTGATTG 57.506 45.455 0.00 0.00 0.00 2.67
5474 7068 4.101741 GCTAGGTGGTCTATGGTTCTGATT 59.898 45.833 0.00 0.00 0.00 2.57
5475 7069 3.643792 GCTAGGTGGTCTATGGTTCTGAT 59.356 47.826 0.00 0.00 0.00 2.90
5476 7070 3.031736 GCTAGGTGGTCTATGGTTCTGA 58.968 50.000 0.00 0.00 0.00 3.27
5477 7071 2.223829 CGCTAGGTGGTCTATGGTTCTG 60.224 54.545 0.00 0.00 0.00 3.02
5478 7072 2.032620 CGCTAGGTGGTCTATGGTTCT 58.967 52.381 0.00 0.00 0.00 3.01
5479 7073 2.029623 TCGCTAGGTGGTCTATGGTTC 58.970 52.381 0.00 0.00 0.00 3.62
5480 7074 1.755380 GTCGCTAGGTGGTCTATGGTT 59.245 52.381 0.00 0.00 0.00 3.67
5481 7075 1.341679 TGTCGCTAGGTGGTCTATGGT 60.342 52.381 0.00 0.00 0.00 3.55
5482 7076 1.399714 TGTCGCTAGGTGGTCTATGG 58.600 55.000 0.00 0.00 0.00 2.74
5483 7077 2.427453 ACTTGTCGCTAGGTGGTCTATG 59.573 50.000 0.00 0.00 0.00 2.23
5484 7078 2.736347 ACTTGTCGCTAGGTGGTCTAT 58.264 47.619 0.00 0.00 0.00 1.98
5485 7079 2.211250 ACTTGTCGCTAGGTGGTCTA 57.789 50.000 0.00 0.00 0.00 2.59
5486 7080 1.817447 GTACTTGTCGCTAGGTGGTCT 59.183 52.381 0.00 0.00 0.00 3.85
5487 7081 1.542915 TGTACTTGTCGCTAGGTGGTC 59.457 52.381 0.00 0.00 0.00 4.02
5488 7082 1.624336 TGTACTTGTCGCTAGGTGGT 58.376 50.000 0.00 0.00 0.00 4.16
5489 7083 2.607187 CTTGTACTTGTCGCTAGGTGG 58.393 52.381 0.00 0.00 0.00 4.61
5490 7084 1.993370 GCTTGTACTTGTCGCTAGGTG 59.007 52.381 0.00 0.00 0.00 4.00
5491 7085 1.616865 TGCTTGTACTTGTCGCTAGGT 59.383 47.619 0.00 0.00 0.00 3.08
5492 7086 1.993370 GTGCTTGTACTTGTCGCTAGG 59.007 52.381 0.00 0.00 0.00 3.02
5493 7087 2.663602 CAGTGCTTGTACTTGTCGCTAG 59.336 50.000 0.00 0.00 0.00 3.42
5494 7088 2.295070 TCAGTGCTTGTACTTGTCGCTA 59.705 45.455 0.00 0.00 0.00 4.26
5495 7089 1.068588 TCAGTGCTTGTACTTGTCGCT 59.931 47.619 0.00 0.00 0.00 4.93
5496 7090 1.497991 TCAGTGCTTGTACTTGTCGC 58.502 50.000 0.00 0.00 0.00 5.19
5497 7091 2.096713 GCTTCAGTGCTTGTACTTGTCG 60.097 50.000 0.00 0.00 0.00 4.35
5498 7092 2.096713 CGCTTCAGTGCTTGTACTTGTC 60.097 50.000 0.00 0.00 0.00 3.18
5499 7093 1.867233 CGCTTCAGTGCTTGTACTTGT 59.133 47.619 0.00 0.00 0.00 3.16
5500 7094 2.135139 TCGCTTCAGTGCTTGTACTTG 58.865 47.619 0.00 0.00 0.00 3.16
5501 7095 2.408050 CTCGCTTCAGTGCTTGTACTT 58.592 47.619 0.00 0.00 0.00 2.24
5502 7096 1.937108 GCTCGCTTCAGTGCTTGTACT 60.937 52.381 0.00 0.00 0.00 2.73
5503 7097 0.440371 GCTCGCTTCAGTGCTTGTAC 59.560 55.000 0.00 0.00 0.00 2.90
5504 7098 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
5505 7099 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
5506 7100 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
5507 7101 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
5508 7102 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
5509 7103 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
5510 7104 0.459237 ATCTTCGGCTCGCTTCAGTG 60.459 55.000 0.00 0.00 0.00 3.66
5511 7105 0.459237 CATCTTCGGCTCGCTTCAGT 60.459 55.000 0.00 0.00 0.00 3.41
5512 7106 0.459237 ACATCTTCGGCTCGCTTCAG 60.459 55.000 0.00 0.00 0.00 3.02
5513 7107 0.737367 CACATCTTCGGCTCGCTTCA 60.737 55.000 0.00 0.00 0.00 3.02
5514 7108 2.002127 CACATCTTCGGCTCGCTTC 58.998 57.895 0.00 0.00 0.00 3.86
5515 7109 2.103042 GCACATCTTCGGCTCGCTT 61.103 57.895 0.00 0.00 0.00 4.68
5516 7110 2.510238 GCACATCTTCGGCTCGCT 60.510 61.111 0.00 0.00 0.00 4.93
5517 7111 3.567797 GGCACATCTTCGGCTCGC 61.568 66.667 0.00 0.00 0.00 5.03
5518 7112 3.257561 CGGCACATCTTCGGCTCG 61.258 66.667 0.00 0.00 0.00 5.03
5519 7113 3.567797 GCGGCACATCTTCGGCTC 61.568 66.667 0.00 0.00 0.00 4.70
5523 7117 3.554692 GACGGCGGCACATCTTCG 61.555 66.667 8.47 0.00 0.00 3.79
5524 7118 1.766143 GATGACGGCGGCACATCTTC 61.766 60.000 22.09 7.78 37.84 2.87
5525 7119 1.815421 GATGACGGCGGCACATCTT 60.815 57.895 22.09 0.00 37.84 2.40
5526 7120 2.202932 GATGACGGCGGCACATCT 60.203 61.111 22.09 0.00 37.84 2.90
5527 7121 3.630148 CGATGACGGCGGCACATC 61.630 66.667 22.09 22.99 37.59 3.06
5537 7131 4.570663 GACGGAGGGGCGATGACG 62.571 72.222 0.00 0.00 42.93 4.35
5538 7132 4.570663 CGACGGAGGGGCGATGAC 62.571 72.222 0.00 0.00 0.00 3.06
5552 7146 4.803426 CTGTCCAGCTCCCGCGAC 62.803 72.222 8.23 0.00 42.32 5.19
5554 7148 4.069232 TTCTGTCCAGCTCCCGCG 62.069 66.667 0.00 0.00 42.32 6.46
5555 7149 2.435059 GTTCTGTCCAGCTCCCGC 60.435 66.667 0.00 0.00 0.00 6.13
5556 7150 0.671781 CAAGTTCTGTCCAGCTCCCG 60.672 60.000 0.00 0.00 0.00 5.14
5557 7151 0.398318 ACAAGTTCTGTCCAGCTCCC 59.602 55.000 0.00 0.00 29.87 4.30
5558 7152 2.147150 GAACAAGTTCTGTCCAGCTCC 58.853 52.381 5.72 0.00 37.23 4.70
5569 7163 6.736123 TCAGACTGTGTACTAGAACAAGTTC 58.264 40.000 1.59 4.82 39.78 3.01
5570 7164 6.710597 TCAGACTGTGTACTAGAACAAGTT 57.289 37.500 1.59 0.00 0.00 2.66
5571 7165 6.710597 TTCAGACTGTGTACTAGAACAAGT 57.289 37.500 1.59 0.00 0.00 3.16
5572 7166 7.203910 ACTTTCAGACTGTGTACTAGAACAAG 58.796 38.462 1.59 0.00 0.00 3.16
5573 7167 7.108841 ACTTTCAGACTGTGTACTAGAACAA 57.891 36.000 1.59 0.00 0.00 2.83
5574 7168 6.710597 ACTTTCAGACTGTGTACTAGAACA 57.289 37.500 1.59 0.00 0.00 3.18
5575 7169 8.966194 GTTAACTTTCAGACTGTGTACTAGAAC 58.034 37.037 1.59 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.