Multiple sequence alignment - TraesCS3D01G270300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G270300 chr3D 100.000 7911 0 0 1 7911 374941196 374933286 0.000000e+00 14609.0
1 TraesCS3D01G270300 chr3D 92.369 249 18 1 2526 2773 433420159 433420407 3.510000e-93 353.0
2 TraesCS3D01G270300 chr3D 91.235 251 20 2 2531 2779 110171037 110170787 2.730000e-89 340.0
3 TraesCS3D01G270300 chr3B 96.726 4215 103 21 3327 7518 488546633 488542431 0.000000e+00 6986.0
4 TraesCS3D01G270300 chr3B 90.638 1442 77 33 811 2205 488549743 488548313 0.000000e+00 1862.0
5 TraesCS3D01G270300 chr3B 88.823 671 34 13 1 652 488550917 488550269 0.000000e+00 785.0
6 TraesCS3D01G270300 chr3B 94.251 487 17 6 2179 2655 488547439 488546954 0.000000e+00 734.0
7 TraesCS3D01G270300 chr3B 90.333 300 12 2 3009 3296 488546925 488546631 2.080000e-100 377.0
8 TraesCS3D01G270300 chr3B 91.165 249 21 1 2526 2773 327330533 327330781 3.540000e-88 337.0
9 TraesCS3D01G270300 chr3B 91.034 145 7 1 7608 7746 488542428 488542284 2.910000e-44 191.0
10 TraesCS3D01G270300 chr3B 91.339 127 5 4 658 784 488550231 488550111 1.370000e-37 169.0
11 TraesCS3D01G270300 chr3A 96.801 3751 92 11 3780 7513 497657687 497653948 0.000000e+00 6237.0
12 TraesCS3D01G270300 chr3A 90.064 2174 114 36 1 2101 497661737 497659593 0.000000e+00 2724.0
13 TraesCS3D01G270300 chr3A 89.303 1019 87 8 2774 3775 497659377 497658364 0.000000e+00 1258.0
14 TraesCS3D01G270300 chr3A 87.006 177 11 4 7743 7911 497653790 497653618 1.050000e-43 189.0
15 TraesCS3D01G270300 chr3A 90.654 107 4 1 7646 7746 497653923 497653817 3.850000e-28 137.0
16 TraesCS3D01G270300 chr3A 91.304 69 5 1 7539 7606 648221907 648221975 8.450000e-15 93.5
17 TraesCS3D01G270300 chr3A 94.595 37 1 1 7416 7452 700854498 700854463 1.000000e-03 56.5
18 TraesCS3D01G270300 chr2D 92.607 257 18 1 2526 2781 158225607 158225351 1.250000e-97 368.0
19 TraesCS3D01G270300 chr2D 92.308 65 5 0 7542 7606 74122903 74122839 8.450000e-15 93.5
20 TraesCS3D01G270300 chr5D 93.388 242 15 1 2531 2771 381166248 381166489 2.710000e-94 357.0
21 TraesCS3D01G270300 chr5D 92.188 64 5 0 7543 7606 495032813 495032750 3.040000e-14 91.6
22 TraesCS3D01G270300 chr5D 89.855 69 6 1 7538 7606 396415810 396415877 3.930000e-13 87.9
23 TraesCS3D01G270300 chr7B 92.369 249 18 1 2526 2773 220875647 220875399 3.510000e-93 353.0
24 TraesCS3D01G270300 chr7B 92.188 64 5 0 7543 7606 364703485 364703548 3.040000e-14 91.6
25 TraesCS3D01G270300 chr7B 90.385 52 4 1 7416 7467 676001730 676001780 5.120000e-07 67.6
26 TraesCS3D01G270300 chr7A 91.803 244 18 2 2531 2773 538182611 538182369 9.830000e-89 339.0
27 TraesCS3D01G270300 chr6B 91.165 249 21 1 2526 2773 389236093 389236341 3.540000e-88 337.0
28 TraesCS3D01G270300 chr4D 95.385 65 3 0 7542 7606 490141099 490141035 3.900000e-18 104.0
29 TraesCS3D01G270300 chrUn 93.846 65 4 0 7542 7606 88048321 88048257 1.820000e-16 99.0
30 TraesCS3D01G270300 chr4A 92.308 65 5 0 7542 7606 484839875 484839811 8.450000e-15 93.5
31 TraesCS3D01G270300 chr1A 89.855 69 6 1 7538 7606 574733806 574733873 3.930000e-13 87.9
32 TraesCS3D01G270300 chr5B 92.308 39 3 0 7420 7458 606015531 606015569 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G270300 chr3D 374933286 374941196 7910 True 14609.000000 14609 100.000000 1 7911 1 chr3D.!!$R2 7910
1 TraesCS3D01G270300 chr3B 488542284 488550917 8633 True 1586.285714 6986 91.877714 1 7746 7 chr3B.!!$R1 7745
2 TraesCS3D01G270300 chr3A 497653618 497661737 8119 True 2109.000000 6237 90.765600 1 7911 5 chr3A.!!$R2 7910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 500 0.107017 ATTGGGAGATTGGAGCACCG 60.107 55.000 0.00 0.00 39.42 4.94 F
1101 1502 1.077429 CCTTGAAGGTAGGGGCAGC 60.077 63.158 2.25 0.00 0.00 5.25 F
2607 3986 0.113385 TTTTCCGGGAGCCCATTCAA 59.887 50.000 0.00 0.00 35.37 2.69 F
2741 4120 0.039035 TGTTGGTTATGGGGCCAGTC 59.961 55.000 4.39 0.00 36.00 3.51 F
2770 4149 0.322322 CCAGGCGTAACAGGGTGTTA 59.678 55.000 0.00 0.00 41.45 2.41 F
2806 4185 0.744414 TTAAGGCATGCCGCTGTCTC 60.744 55.000 30.50 4.54 41.91 3.36 F
4344 6410 0.760567 TGATCATCTCGGGAGGGGTG 60.761 60.000 0.00 0.00 0.00 4.61 F
5280 7346 1.067693 TATCAACTGTGCTTGCGTCG 58.932 50.000 0.00 0.00 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2572 0.905357 TACCAGCAGGAGAAGAAGCC 59.095 55.000 0.35 0.0 38.69 4.35 R
2722 4101 0.039035 GACTGGCCCCATAACCAACA 59.961 55.000 0.00 0.0 34.96 3.33 R
3902 5968 2.492088 GCCAAAAGCAGTAGGTTAAGGG 59.508 50.000 0.00 0.0 42.97 3.95 R
4075 6141 4.473196 TGCTTAGGTCCAATATCTCCAACA 59.527 41.667 0.00 0.0 0.00 3.33 R
4609 6675 5.014202 GGGGAAAGTAAGAAGGCATGTTAA 58.986 41.667 0.00 0.0 0.00 2.01 R
5130 7196 0.960861 GCAACTTGGGTACTCCTGCC 60.961 60.000 0.00 0.0 36.20 4.85 R
6043 8123 0.106918 AGTTCTCGTTTGGCACCCAA 60.107 50.000 0.00 0.0 42.29 4.12 R
7544 9643 0.034756 AGATGCACGCGGCCATATTA 59.965 50.000 12.47 0.0 43.89 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 2.028567 CAGCGAGAGAAAAGAAGGAGGT 60.029 50.000 0.00 0.00 0.00 3.85
224 226 6.041979 GGGTGGGAGCATAATTTATTGACATT 59.958 38.462 0.00 0.00 0.00 2.71
264 266 5.671742 AAGGATTTCCGCAAATTTGTTTG 57.328 34.783 19.03 9.58 42.08 2.93
265 267 4.064388 AGGATTTCCGCAAATTTGTTTGG 58.936 39.130 19.03 17.16 42.08 3.28
266 268 4.061596 GGATTTCCGCAAATTTGTTTGGA 58.938 39.130 19.03 18.90 31.94 3.53
267 269 4.694982 GGATTTCCGCAAATTTGTTTGGAT 59.305 37.500 21.56 12.76 31.94 3.41
268 270 5.181056 GGATTTCCGCAAATTTGTTTGGATT 59.819 36.000 21.56 15.32 31.94 3.01
270 272 6.442513 TTTCCGCAAATTTGTTTGGATTTT 57.557 29.167 21.56 0.00 32.78 1.82
271 273 7.553881 TTTCCGCAAATTTGTTTGGATTTTA 57.446 28.000 21.56 10.19 32.78 1.52
272 274 7.553881 TTCCGCAAATTTGTTTGGATTTTAA 57.446 28.000 21.56 9.93 32.78 1.52
273 275 7.553881 TCCGCAAATTTGTTTGGATTTTAAA 57.446 28.000 19.03 0.14 32.78 1.52
274 276 7.985476 TCCGCAAATTTGTTTGGATTTTAAAA 58.015 26.923 19.03 2.51 32.78 1.52
275 277 8.624776 TCCGCAAATTTGTTTGGATTTTAAAAT 58.375 25.926 19.03 13.24 32.78 1.82
276 278 8.689069 CCGCAAATTTGTTTGGATTTTAAAATG 58.311 29.630 17.98 2.01 32.78 2.32
277 279 8.206600 CGCAAATTTGTTTGGATTTTAAAATGC 58.793 29.630 21.64 21.64 37.27 3.56
278 280 9.247126 GCAAATTTGTTTGGATTTTAAAATGCT 57.753 25.926 26.40 7.82 37.58 3.79
283 285 8.825667 TTGTTTGGATTTTAAAATGCTACTCC 57.174 30.769 26.40 17.64 37.58 3.85
284 286 7.957002 TGTTTGGATTTTAAAATGCTACTCCA 58.043 30.769 26.40 19.58 37.58 3.86
285 287 7.870445 TGTTTGGATTTTAAAATGCTACTCCAC 59.130 33.333 26.40 16.82 37.58 4.02
286 288 6.524101 TGGATTTTAAAATGCTACTCCACC 57.476 37.500 26.40 15.05 37.58 4.61
299 301 4.003788 CCACCAGGCGTCGAACCT 62.004 66.667 2.38 2.38 38.35 3.50
358 364 2.111999 CTTGTCCTGGCCCTCGACAA 62.112 60.000 21.43 21.43 42.60 3.18
368 374 2.126580 CTCGACAACGACCGTCCC 60.127 66.667 0.00 0.00 43.81 4.46
369 375 2.906388 TCGACAACGACCGTCCCA 60.906 61.111 0.00 0.00 43.81 4.37
386 392 4.503296 CGTCCCATCCGATTCTTTAATCCT 60.503 45.833 0.00 0.00 38.66 3.24
388 394 4.074970 CCCATCCGATTCTTTAATCCTGG 58.925 47.826 0.00 0.00 38.66 4.45
415 421 1.079127 CCCAGCGTGGAATCGTCTT 60.079 57.895 5.71 0.00 40.96 3.01
428 434 1.753930 TCGTCTTACAGATGGCCGTA 58.246 50.000 0.00 0.00 32.20 4.02
443 465 3.199946 TGGCCGTAGAATTCTTCCAAGAT 59.800 43.478 14.36 0.00 34.49 2.40
475 497 1.918262 AGACATTGGGAGATTGGAGCA 59.082 47.619 0.00 0.00 0.00 4.26
478 500 0.107017 ATTGGGAGATTGGAGCACCG 60.107 55.000 0.00 0.00 39.42 4.94
479 501 2.514824 GGGAGATTGGAGCACCGC 60.515 66.667 0.00 0.00 39.42 5.68
481 503 1.078143 GGAGATTGGAGCACCGCTT 60.078 57.895 0.00 0.00 39.88 4.68
486 508 2.749621 AGATTGGAGCACCGCTTAAAAG 59.250 45.455 0.00 0.00 39.88 2.27
487 509 2.264005 TTGGAGCACCGCTTAAAAGA 57.736 45.000 0.00 0.00 39.88 2.52
488 510 2.264005 TGGAGCACCGCTTAAAAGAA 57.736 45.000 0.00 0.00 39.88 2.52
490 512 2.952978 TGGAGCACCGCTTAAAAGAAAA 59.047 40.909 0.00 0.00 39.88 2.29
491 513 3.381908 TGGAGCACCGCTTAAAAGAAAAA 59.618 39.130 0.00 0.00 39.88 1.94
492 514 4.038642 TGGAGCACCGCTTAAAAGAAAAAT 59.961 37.500 0.00 0.00 39.88 1.82
493 515 4.621460 GGAGCACCGCTTAAAAGAAAAATC 59.379 41.667 0.00 0.00 39.88 2.17
646 674 4.816984 TCTCCCCGCCTCCGTCTC 62.817 72.222 0.00 0.00 0.00 3.36
760 820 2.808523 AGCTGCTCCTTTGCTTTTTC 57.191 45.000 0.00 0.00 32.61 2.29
1101 1502 1.077429 CCTTGAAGGTAGGGGCAGC 60.077 63.158 2.25 0.00 0.00 5.25
1102 1504 1.685224 CTTGAAGGTAGGGGCAGCA 59.315 57.895 0.00 0.00 0.00 4.41
1228 1630 1.294659 CGCTGCTCAAGTTCCAGTCC 61.295 60.000 0.00 0.00 0.00 3.85
1347 1750 3.130280 TGTGATGCTGTGAGTTGATGT 57.870 42.857 0.00 0.00 0.00 3.06
1410 1819 6.319658 GGCTCATGAGTCTATTTGGAAAATGA 59.680 38.462 23.38 0.00 0.00 2.57
1411 1820 7.416022 GCTCATGAGTCTATTTGGAAAATGAG 58.584 38.462 23.38 0.00 40.78 2.90
1412 1821 7.325660 TCATGAGTCTATTTGGAAAATGAGC 57.674 36.000 0.00 0.00 0.00 4.26
1413 1822 7.114754 TCATGAGTCTATTTGGAAAATGAGCT 58.885 34.615 0.00 0.00 0.00 4.09
1415 1824 7.765695 TGAGTCTATTTGGAAAATGAGCTTT 57.234 32.000 0.00 0.00 0.00 3.51
1425 1834 5.047802 TGGAAAATGAGCTTTCAGTTCATCC 60.048 40.000 3.86 3.45 43.87 3.51
1473 1882 6.151985 TGACTGTATCCTTCTCTCTTCAAGAC 59.848 42.308 0.00 0.00 0.00 3.01
1556 1970 6.756221 TCCTAGTTTTCTCCTTCACAGTTAC 58.244 40.000 0.00 0.00 0.00 2.50
1560 1974 4.411256 TTTCTCCTTCACAGTTACCGTT 57.589 40.909 0.00 0.00 0.00 4.44
1651 2065 3.482786 CGCTTTGTGTAGCAATTCAGAC 58.517 45.455 0.00 0.00 41.28 3.51
1691 2113 1.625818 AGGCTCAATCTTCAACGGACT 59.374 47.619 0.00 0.00 0.00 3.85
1692 2114 2.832129 AGGCTCAATCTTCAACGGACTA 59.168 45.455 0.00 0.00 0.00 2.59
1693 2115 3.118956 AGGCTCAATCTTCAACGGACTAG 60.119 47.826 0.00 0.00 0.00 2.57
1736 2158 5.803020 AGGAGTGCATTCGTATTTTTCTC 57.197 39.130 2.23 0.00 0.00 2.87
1813 2244 6.432403 TTTTGGGCTGAATAAGGAAAATGT 57.568 33.333 0.00 0.00 0.00 2.71
1854 2285 3.360249 CCAACTCTGGTTTCTTTGCTG 57.640 47.619 0.00 0.00 38.00 4.41
1859 2290 6.071728 CCAACTCTGGTTTCTTTGCTGAATAT 60.072 38.462 0.00 0.00 38.00 1.28
1860 2291 7.121168 CCAACTCTGGTTTCTTTGCTGAATATA 59.879 37.037 0.00 0.00 38.00 0.86
1861 2292 8.680903 CAACTCTGGTTTCTTTGCTGAATATAT 58.319 33.333 0.00 0.00 32.73 0.86
1862 2293 9.905713 AACTCTGGTTTCTTTGCTGAATATATA 57.094 29.630 0.00 0.00 30.55 0.86
1863 2294 9.553064 ACTCTGGTTTCTTTGCTGAATATATAG 57.447 33.333 0.00 0.00 0.00 1.31
1864 2295 9.553064 CTCTGGTTTCTTTGCTGAATATATAGT 57.447 33.333 0.00 0.00 0.00 2.12
1865 2296 9.547753 TCTGGTTTCTTTGCTGAATATATAGTC 57.452 33.333 3.21 3.21 0.00 2.59
1866 2297 9.553064 CTGGTTTCTTTGCTGAATATATAGTCT 57.447 33.333 11.21 0.00 0.00 3.24
1867 2298 9.905713 TGGTTTCTTTGCTGAATATATAGTCTT 57.094 29.630 11.21 0.00 0.00 3.01
1872 2303 9.988815 TCTTTGCTGAATATATAGTCTTTCCTC 57.011 33.333 11.21 0.00 0.00 3.71
1873 2304 9.770097 CTTTGCTGAATATATAGTCTTTCCTCA 57.230 33.333 11.21 0.00 0.00 3.86
1875 2306 9.770097 TTGCTGAATATATAGTCTTTCCTCAAG 57.230 33.333 11.21 0.00 0.00 3.02
1951 2414 7.811282 TGCCTATCTTGAATTTACCAAGGATA 58.189 34.615 5.75 3.21 40.88 2.59
2015 2479 6.502136 AGAAGCCTTTTCACAAGCTTATAC 57.498 37.500 0.00 0.00 45.20 1.47
2016 2480 6.241645 AGAAGCCTTTTCACAAGCTTATACT 58.758 36.000 0.00 0.00 45.20 2.12
2076 2540 3.791973 GTGTTCATTCCACCAAACACA 57.208 42.857 11.23 0.00 46.68 3.72
2084 2548 3.584406 TCCACCAAACACAAACAAGTG 57.416 42.857 0.00 0.00 44.93 3.16
2091 2555 4.489810 CAAACACAAACAAGTGGCTACAA 58.510 39.130 2.02 0.00 43.72 2.41
2118 2582 5.112686 AGTTGTTATGATCGGCTTCTTCTC 58.887 41.667 0.00 0.00 0.00 2.87
2143 2607 6.012658 TGCTGGTATTCTCAATTTTGTGAC 57.987 37.500 0.00 0.00 31.23 3.67
2152 2616 4.023279 TCTCAATTTTGTGACGTGGGATTG 60.023 41.667 0.00 0.00 0.00 2.67
2177 2641 6.911250 TGACCTATAAAGTGAGACTGTTGA 57.089 37.500 0.00 0.00 0.00 3.18
2189 3555 8.001881 AGTGAGACTGTTGACTTATACCATAG 57.998 38.462 0.00 0.00 0.00 2.23
2209 3575 3.509442 AGCATTGAAGGTCCAAAATGGA 58.491 40.909 11.17 0.00 45.98 3.41
2270 3637 4.504097 GGCAAGTTTGTTCAAGTGAATCAC 59.496 41.667 5.02 5.02 36.33 3.06
2283 3650 6.149973 TCAAGTGAATCACCATCAACAGAATC 59.850 38.462 10.12 0.00 34.49 2.52
2548 3927 2.012673 CATGTGAGAGCCTGGCTTAAC 58.987 52.381 24.26 20.09 39.88 2.01
2551 3930 1.276421 GTGAGAGCCTGGCTTAACAGA 59.724 52.381 24.26 1.18 39.88 3.41
2606 3985 0.323360 CTTTTCCGGGAGCCCATTCA 60.323 55.000 0.00 0.00 35.37 2.57
2607 3986 0.113385 TTTTCCGGGAGCCCATTCAA 59.887 50.000 0.00 0.00 35.37 2.69
2655 4034 5.296151 TGGCTTGGAGTAATTCTAGGATG 57.704 43.478 0.00 0.00 0.00 3.51
2656 4035 4.103153 TGGCTTGGAGTAATTCTAGGATGG 59.897 45.833 0.00 0.00 0.00 3.51
2659 4038 5.615289 CTTGGAGTAATTCTAGGATGGGTG 58.385 45.833 0.00 0.00 0.00 4.61
2660 4039 4.890988 TGGAGTAATTCTAGGATGGGTGA 58.109 43.478 0.00 0.00 0.00 4.02
2661 4040 5.285401 TGGAGTAATTCTAGGATGGGTGAA 58.715 41.667 0.00 0.00 0.00 3.18
2662 4041 5.130477 TGGAGTAATTCTAGGATGGGTGAAC 59.870 44.000 0.00 0.00 0.00 3.18
2663 4042 5.277857 AGTAATTCTAGGATGGGTGAACG 57.722 43.478 0.00 0.00 0.00 3.95
2664 4043 4.960469 AGTAATTCTAGGATGGGTGAACGA 59.040 41.667 0.00 0.00 0.00 3.85
2665 4044 3.821421 ATTCTAGGATGGGTGAACGAC 57.179 47.619 0.00 0.00 0.00 4.34
2666 4045 1.481871 TCTAGGATGGGTGAACGACC 58.518 55.000 0.00 0.00 45.28 4.79
2673 4052 2.739132 GGTGAACGACCGGGAAGT 59.261 61.111 6.32 0.00 34.02 3.01
2675 4054 1.226030 GGTGAACGACCGGGAAGTTG 61.226 60.000 14.62 0.00 34.02 3.16
2676 4055 1.070105 TGAACGACCGGGAAGTTGG 59.930 57.895 14.62 0.00 0.00 3.77
2685 4064 2.033602 GGAAGTTGGTCCCGGGTG 59.966 66.667 22.86 0.00 0.00 4.61
2686 4065 2.671963 GAAGTTGGTCCCGGGTGC 60.672 66.667 22.86 14.82 0.00 5.01
2687 4066 4.636435 AAGTTGGTCCCGGGTGCG 62.636 66.667 22.86 0.00 0.00 5.34
2696 4075 4.758251 CCGGGTGCGCATGAGTGA 62.758 66.667 15.91 0.00 0.00 3.41
2697 4076 3.190849 CGGGTGCGCATGAGTGAG 61.191 66.667 15.91 0.00 0.00 3.51
2698 4077 2.821366 GGGTGCGCATGAGTGAGG 60.821 66.667 15.91 0.00 0.00 3.86
2699 4078 2.265739 GGTGCGCATGAGTGAGGA 59.734 61.111 15.91 0.00 0.00 3.71
2700 4079 2.103042 GGTGCGCATGAGTGAGGAC 61.103 63.158 15.91 0.00 43.76 3.85
2701 4080 1.374631 GTGCGCATGAGTGAGGACA 60.375 57.895 15.91 0.00 43.89 4.02
2702 4081 0.950555 GTGCGCATGAGTGAGGACAA 60.951 55.000 15.91 0.00 43.89 3.18
2703 4082 0.250252 TGCGCATGAGTGAGGACAAA 60.250 50.000 5.66 0.00 0.00 2.83
2704 4083 0.445436 GCGCATGAGTGAGGACAAAG 59.555 55.000 0.30 0.00 0.00 2.77
2705 4084 1.800805 CGCATGAGTGAGGACAAAGT 58.199 50.000 0.00 0.00 0.00 2.66
2706 4085 1.462283 CGCATGAGTGAGGACAAAGTG 59.538 52.381 0.00 0.00 0.00 3.16
2707 4086 1.198637 GCATGAGTGAGGACAAAGTGC 59.801 52.381 0.00 0.00 0.00 4.40
2708 4087 1.462283 CATGAGTGAGGACAAAGTGCG 59.538 52.381 0.00 0.00 0.00 5.34
2709 4088 0.464036 TGAGTGAGGACAAAGTGCGT 59.536 50.000 0.00 0.00 0.00 5.24
2710 4089 1.684450 TGAGTGAGGACAAAGTGCGTA 59.316 47.619 0.00 0.00 0.00 4.42
2711 4090 2.288213 TGAGTGAGGACAAAGTGCGTAG 60.288 50.000 0.00 0.00 0.00 3.51
2712 4091 1.961394 AGTGAGGACAAAGTGCGTAGA 59.039 47.619 0.00 0.00 0.00 2.59
2713 4092 2.364324 AGTGAGGACAAAGTGCGTAGAA 59.636 45.455 0.00 0.00 0.00 2.10
2714 4093 3.128349 GTGAGGACAAAGTGCGTAGAAA 58.872 45.455 0.00 0.00 0.00 2.52
2715 4094 3.558418 GTGAGGACAAAGTGCGTAGAAAA 59.442 43.478 0.00 0.00 0.00 2.29
2716 4095 3.807622 TGAGGACAAAGTGCGTAGAAAAG 59.192 43.478 0.00 0.00 0.00 2.27
2717 4096 4.056050 GAGGACAAAGTGCGTAGAAAAGA 58.944 43.478 0.00 0.00 0.00 2.52
2718 4097 3.808174 AGGACAAAGTGCGTAGAAAAGAC 59.192 43.478 0.00 0.00 0.00 3.01
2719 4098 3.808174 GGACAAAGTGCGTAGAAAAGACT 59.192 43.478 0.00 0.00 0.00 3.24
2720 4099 4.986659 GGACAAAGTGCGTAGAAAAGACTA 59.013 41.667 0.00 0.00 0.00 2.59
2721 4100 5.118817 GGACAAAGTGCGTAGAAAAGACTAG 59.881 44.000 0.00 0.00 0.00 2.57
2722 4101 5.598769 ACAAAGTGCGTAGAAAAGACTAGT 58.401 37.500 0.00 0.00 0.00 2.57
2723 4102 5.462398 ACAAAGTGCGTAGAAAAGACTAGTG 59.538 40.000 0.00 0.00 0.00 2.74
2724 4103 4.850347 AGTGCGTAGAAAAGACTAGTGT 57.150 40.909 0.00 0.00 0.00 3.55
2725 4104 5.197682 AGTGCGTAGAAAAGACTAGTGTT 57.802 39.130 0.00 0.00 0.00 3.32
2726 4105 4.982916 AGTGCGTAGAAAAGACTAGTGTTG 59.017 41.667 5.96 0.00 0.00 3.33
2727 4106 4.150098 GTGCGTAGAAAAGACTAGTGTTGG 59.850 45.833 5.96 0.00 0.00 3.77
2728 4107 4.202182 TGCGTAGAAAAGACTAGTGTTGGT 60.202 41.667 5.96 0.00 0.00 3.67
2729 4108 4.748600 GCGTAGAAAAGACTAGTGTTGGTT 59.251 41.667 5.96 0.00 0.00 3.67
2730 4109 5.922544 GCGTAGAAAAGACTAGTGTTGGTTA 59.077 40.000 5.96 0.00 0.00 2.85
2731 4110 6.589139 GCGTAGAAAAGACTAGTGTTGGTTAT 59.411 38.462 5.96 0.00 0.00 1.89
2732 4111 7.411588 GCGTAGAAAAGACTAGTGTTGGTTATG 60.412 40.741 5.96 5.95 0.00 1.90
2733 4112 7.063074 CGTAGAAAAGACTAGTGTTGGTTATGG 59.937 40.741 5.96 0.00 0.00 2.74
2734 4113 6.238648 AGAAAAGACTAGTGTTGGTTATGGG 58.761 40.000 5.96 0.00 0.00 4.00
2735 4114 4.569719 AAGACTAGTGTTGGTTATGGGG 57.430 45.455 4.15 0.00 0.00 4.96
2736 4115 2.238898 AGACTAGTGTTGGTTATGGGGC 59.761 50.000 0.00 0.00 0.00 5.80
2737 4116 1.283905 ACTAGTGTTGGTTATGGGGCC 59.716 52.381 0.00 0.00 0.00 5.80
2738 4117 1.283613 CTAGTGTTGGTTATGGGGCCA 59.716 52.381 4.39 0.00 0.00 5.36
2739 4118 0.039618 AGTGTTGGTTATGGGGCCAG 59.960 55.000 4.39 0.00 36.00 4.85
2740 4119 0.251608 GTGTTGGTTATGGGGCCAGT 60.252 55.000 4.39 0.00 36.00 4.00
2741 4120 0.039035 TGTTGGTTATGGGGCCAGTC 59.961 55.000 4.39 0.00 36.00 3.51
2742 4121 0.331616 GTTGGTTATGGGGCCAGTCT 59.668 55.000 4.39 0.00 36.00 3.24
2743 4122 1.080638 TTGGTTATGGGGCCAGTCTT 58.919 50.000 4.39 0.00 36.00 3.01
2744 4123 0.331278 TGGTTATGGGGCCAGTCTTG 59.669 55.000 4.39 0.00 0.00 3.02
2745 4124 0.623723 GGTTATGGGGCCAGTCTTGA 59.376 55.000 4.39 0.00 0.00 3.02
2746 4125 1.215423 GGTTATGGGGCCAGTCTTGAT 59.785 52.381 4.39 0.00 0.00 2.57
2747 4126 2.576615 GTTATGGGGCCAGTCTTGATC 58.423 52.381 4.39 0.00 0.00 2.92
2748 4127 1.140312 TATGGGGCCAGTCTTGATCC 58.860 55.000 4.39 0.00 0.00 3.36
2749 4128 1.649271 ATGGGGCCAGTCTTGATCCC 61.649 60.000 4.39 0.00 37.07 3.85
2750 4129 2.190578 GGGCCAGTCTTGATCCCG 59.809 66.667 4.39 0.00 30.76 5.14
2751 4130 2.514824 GGCCAGTCTTGATCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
2752 4131 2.514824 GCCAGTCTTGATCCCGCC 60.515 66.667 0.00 0.00 0.00 6.13
2753 4132 2.989639 CCAGTCTTGATCCCGCCA 59.010 61.111 0.00 0.00 0.00 5.69
2754 4133 1.153289 CCAGTCTTGATCCCGCCAG 60.153 63.158 0.00 0.00 0.00 4.85
2755 4134 1.153289 CAGTCTTGATCCCGCCAGG 60.153 63.158 0.00 0.00 37.24 4.45
2756 4135 2.514824 GTCTTGATCCCGCCAGGC 60.515 66.667 0.00 0.00 35.76 4.85
2767 4146 2.746277 GCCAGGCGTAACAGGGTG 60.746 66.667 0.00 0.00 0.00 4.61
2768 4147 2.747686 CCAGGCGTAACAGGGTGT 59.252 61.111 0.00 0.00 0.00 4.16
2769 4148 1.072505 CCAGGCGTAACAGGGTGTT 59.927 57.895 0.00 0.00 43.88 3.32
2770 4149 0.322322 CCAGGCGTAACAGGGTGTTA 59.678 55.000 0.00 0.00 41.45 2.41
2778 4157 1.675552 AACAGGGTGTTACAGTGCAC 58.324 50.000 9.40 9.40 39.09 4.57
2784 4163 2.356135 GGTGTTACAGTGCACCCTATG 58.644 52.381 14.63 7.82 46.91 2.23
2806 4185 0.744414 TTAAGGCATGCCGCTGTCTC 60.744 55.000 30.50 4.54 41.91 3.36
2815 4194 4.154347 CGCTGTCTCTCTGCCCCC 62.154 72.222 0.00 0.00 37.66 5.40
2840 4219 3.269178 CTCCACCTTCATCTTCTTCAGC 58.731 50.000 0.00 0.00 0.00 4.26
2842 4221 3.265221 TCCACCTTCATCTTCTTCAGCAT 59.735 43.478 0.00 0.00 0.00 3.79
2843 4222 4.015084 CCACCTTCATCTTCTTCAGCATT 58.985 43.478 0.00 0.00 0.00 3.56
2847 4226 4.458295 CCTTCATCTTCTTCAGCATTGTGT 59.542 41.667 0.00 0.00 0.00 3.72
2854 4233 4.284829 TCTTCAGCATTGTGTCCATGTA 57.715 40.909 0.00 0.00 0.00 2.29
2857 4236 1.063027 CAGCATTGTGTCCATGTAGCG 59.937 52.381 0.00 0.00 0.00 4.26
2867 4246 3.509967 TGTCCATGTAGCGAAAAGAGAGA 59.490 43.478 0.00 0.00 0.00 3.10
2868 4247 4.021456 TGTCCATGTAGCGAAAAGAGAGAA 60.021 41.667 0.00 0.00 0.00 2.87
2869 4248 5.112686 GTCCATGTAGCGAAAAGAGAGAAT 58.887 41.667 0.00 0.00 0.00 2.40
2871 4250 4.272018 CCATGTAGCGAAAAGAGAGAATGG 59.728 45.833 0.00 0.00 0.00 3.16
2872 4251 3.861840 TGTAGCGAAAAGAGAGAATGGG 58.138 45.455 0.00 0.00 0.00 4.00
2899 4278 8.040132 AGAGAGAGATGATACTTGTTTGAAAGG 58.960 37.037 0.00 0.00 0.00 3.11
2906 4285 7.272037 TGATACTTGTTTGAAAGGAAAGGTC 57.728 36.000 0.00 0.00 0.00 3.85
2907 4286 6.831353 TGATACTTGTTTGAAAGGAAAGGTCA 59.169 34.615 0.00 0.00 0.00 4.02
2916 4295 6.790232 TGAAAGGAAAGGTCACATTTCTTT 57.210 33.333 14.26 10.40 37.50 2.52
2927 4306 9.793259 AAGGTCACATTTCTTTTCATACTTCTA 57.207 29.630 0.00 0.00 0.00 2.10
2936 4315 7.171630 TCTTTTCATACTTCTACAGACCCTC 57.828 40.000 0.00 0.00 0.00 4.30
2938 4317 5.916661 TTCATACTTCTACAGACCCTCAC 57.083 43.478 0.00 0.00 0.00 3.51
2954 4333 4.166531 ACCCTCACACCTAGTTTTAACCAA 59.833 41.667 0.00 0.00 0.00 3.67
2962 4341 6.709397 ACACCTAGTTTTAACCAAGCTAAGAC 59.291 38.462 0.00 0.00 28.56 3.01
2971 4350 2.304180 ACCAAGCTAAGACATGTGCTCT 59.696 45.455 1.15 0.00 34.38 4.09
2986 4365 3.578282 TGTGCTCTCTTGATCTTACCACA 59.422 43.478 0.00 0.00 0.00 4.17
2987 4366 4.040339 TGTGCTCTCTTGATCTTACCACAA 59.960 41.667 0.00 0.00 0.00 3.33
3002 4381 8.997621 TCTTACCACAAAACTAGATATGTGAC 57.002 34.615 20.33 0.00 44.52 3.67
3003 4382 8.590204 TCTTACCACAAAACTAGATATGTGACA 58.410 33.333 20.33 0.00 44.52 3.58
3081 4460 2.224426 TGCCAAGTTGACTTCCATACGT 60.224 45.455 3.87 0.00 33.11 3.57
3082 4461 2.159627 GCCAAGTTGACTTCCATACGTG 59.840 50.000 3.87 0.00 33.11 4.49
3089 4480 4.106029 TGACTTCCATACGTGTAGAAGC 57.894 45.455 17.72 12.07 39.46 3.86
3095 4486 3.065786 TCCATACGTGTAGAAGCTTACCG 59.934 47.826 0.00 3.99 0.00 4.02
3125 4516 9.750125 GAAGGAAAATGTTTGTTTTCTACTCAT 57.250 29.630 10.73 0.00 43.94 2.90
3401 4795 8.258007 TCATCTTAAGGATTGTACTTACTGTGG 58.742 37.037 1.85 0.00 30.66 4.17
3609 5003 9.231297 TGCAATATGGTAAAGAGATAAATAGGC 57.769 33.333 0.00 0.00 0.00 3.93
3776 5170 6.592870 ACTGTTAGGTTCCATCCTTTATAGC 58.407 40.000 0.00 0.00 38.86 2.97
3880 5946 7.987268 TTACTCAGTAGCATAAAAGATGTCG 57.013 36.000 0.00 0.00 0.00 4.35
3902 5968 4.435253 CGATCTGTCAATCAAGCACTTGTC 60.435 45.833 10.05 0.00 41.16 3.18
3911 5977 2.441750 TCAAGCACTTGTCCCTTAACCT 59.558 45.455 10.05 0.00 41.16 3.50
3991 6057 5.121811 TGCTGCAACCATTACAATGTTTTT 58.878 33.333 0.00 0.00 34.60 1.94
4075 6141 1.818674 GGAAATTGGTGGTCTCGCAAT 59.181 47.619 0.00 0.00 0.00 3.56
4344 6410 0.760567 TGATCATCTCGGGAGGGGTG 60.761 60.000 0.00 0.00 0.00 4.61
4399 6465 9.539194 AGGAAACTAGGATTTTCATCAATTCTT 57.461 29.630 6.63 0.00 40.61 2.52
4580 6646 5.520376 ACTGCTATGCAAGTTCAGTTTTT 57.480 34.783 0.00 0.00 38.41 1.94
4606 6672 7.071196 TCTCTTAAATACATCAGCTGGTACCAT 59.929 37.037 16.75 0.00 0.00 3.55
4607 6673 8.257602 TCTTAAATACATCAGCTGGTACCATA 57.742 34.615 16.75 3.06 0.00 2.74
4608 6674 8.710239 TCTTAAATACATCAGCTGGTACCATAA 58.290 33.333 16.75 5.59 0.00 1.90
4609 6675 9.507329 CTTAAATACATCAGCTGGTACCATAAT 57.493 33.333 16.75 3.91 0.00 1.28
5130 7196 3.589988 AGTTTTGCTCTCCTGATGTACG 58.410 45.455 0.00 0.00 0.00 3.67
5209 7275 3.386932 ACATTGTGGCAACCTATCCAT 57.613 42.857 0.00 0.00 34.47 3.41
5280 7346 1.067693 TATCAACTGTGCTTGCGTCG 58.932 50.000 0.00 0.00 0.00 5.12
5595 7672 2.501723 TCCTACTGTCAGAATGCTTCCC 59.498 50.000 6.91 0.00 34.76 3.97
5630 7707 7.551035 TGTGCTCAAATTAAAATGTTTTGCT 57.449 28.000 1.16 0.00 31.88 3.91
5901 7978 1.750193 TTGAGCCGGAATCATGGAAC 58.250 50.000 5.05 0.00 0.00 3.62
5997 8077 6.882610 TGCCTATTGGATGTTATGTCAATC 57.117 37.500 0.00 0.00 34.57 2.67
6043 8123 6.289834 TCACTTGCCAAATGAAATGAAATGT 58.710 32.000 0.00 0.00 0.00 2.71
6222 8310 3.157087 CCCTGCAACTAAACAAGGTGAT 58.843 45.455 0.00 0.00 46.79 3.06
6246 8334 6.046593 TGTACCGTCCAGTTCATATGATTTC 58.953 40.000 6.17 0.94 0.00 2.17
6268 8356 0.106268 TTTCTGGGGTGTGCATGTGT 60.106 50.000 0.00 0.00 0.00 3.72
6353 8444 3.202829 ACGTTTCTGCTCCTAAAACCA 57.797 42.857 0.00 0.00 30.84 3.67
6678 8769 2.575735 TGGAGTGCATTAAGGATGACCA 59.424 45.455 0.00 0.00 38.03 4.02
6712 8803 1.729586 TGCTTGACCCTACCTTGACT 58.270 50.000 0.00 0.00 0.00 3.41
6727 8818 7.661847 CCTACCTTGACTACTCACAAAGAAAAT 59.338 37.037 0.00 0.00 0.00 1.82
6793 8884 2.094417 CGATCCGAAAAAGAGACCAAGC 59.906 50.000 0.00 0.00 0.00 4.01
6841 8932 1.324736 GAAGTGCTAGCGATTTCACCG 59.675 52.381 10.77 0.00 0.00 4.94
6968 9059 1.215647 CTGAGGTCCTGTGCGTACC 59.784 63.158 0.00 0.00 0.00 3.34
7283 9375 6.169557 TGGTATGGTGAATGGACTATACAC 57.830 41.667 0.00 0.00 40.36 2.90
7284 9376 5.663556 TGGTATGGTGAATGGACTATACACA 59.336 40.000 0.00 0.00 40.36 3.72
7448 9546 9.804758 TGAACTAAAACCACGACAAATATTTTT 57.195 25.926 0.00 0.00 0.00 1.94
7460 9559 6.312141 ACAAATATTTTTGAATGGAGGGGG 57.688 37.500 14.53 0.00 44.11 5.40
7515 9614 5.007823 CGTATCAGATCCGAGTCTACTTTGT 59.992 44.000 0.00 0.00 0.00 2.83
7518 9617 4.158025 TCAGATCCGAGTCTACTTTGTTCC 59.842 45.833 0.00 0.00 0.00 3.62
7519 9618 4.082190 CAGATCCGAGTCTACTTTGTTCCA 60.082 45.833 0.00 0.00 0.00 3.53
7520 9619 4.712337 AGATCCGAGTCTACTTTGTTCCAT 59.288 41.667 0.00 0.00 0.00 3.41
7521 9620 4.188247 TCCGAGTCTACTTTGTTCCATG 57.812 45.455 0.00 0.00 0.00 3.66
7522 9621 3.056107 TCCGAGTCTACTTTGTTCCATGG 60.056 47.826 4.97 4.97 0.00 3.66
7523 9622 3.306780 CCGAGTCTACTTTGTTCCATGGT 60.307 47.826 12.58 0.00 0.00 3.55
7524 9623 4.081862 CCGAGTCTACTTTGTTCCATGGTA 60.082 45.833 12.58 0.00 0.00 3.25
7525 9624 4.863131 CGAGTCTACTTTGTTCCATGGTAC 59.137 45.833 14.25 14.25 0.00 3.34
7526 9625 5.336531 CGAGTCTACTTTGTTCCATGGTACT 60.337 44.000 20.70 4.85 0.00 2.73
7527 9626 6.435292 AGTCTACTTTGTTCCATGGTACTT 57.565 37.500 20.70 6.84 0.00 2.24
7528 9627 6.231211 AGTCTACTTTGTTCCATGGTACTTG 58.769 40.000 20.70 13.14 0.00 3.16
7529 9628 5.995897 GTCTACTTTGTTCCATGGTACTTGT 59.004 40.000 20.70 17.18 0.00 3.16
7530 9629 6.485648 GTCTACTTTGTTCCATGGTACTTGTT 59.514 38.462 20.70 7.15 0.00 2.83
7531 9630 5.514274 ACTTTGTTCCATGGTACTTGTTG 57.486 39.130 20.70 9.92 0.00 3.33
7532 9631 4.340950 ACTTTGTTCCATGGTACTTGTTGG 59.659 41.667 20.70 8.75 0.00 3.77
7533 9632 3.866703 TGTTCCATGGTACTTGTTGGA 57.133 42.857 20.70 0.00 36.49 3.53
7534 9633 3.482436 TGTTCCATGGTACTTGTTGGAC 58.518 45.455 20.70 0.00 37.97 4.02
7535 9634 3.117851 TGTTCCATGGTACTTGTTGGACA 60.118 43.478 20.70 0.00 37.97 4.02
7536 9635 3.134574 TCCATGGTACTTGTTGGACAC 57.865 47.619 12.58 0.00 33.40 3.67
7537 9636 2.439880 TCCATGGTACTTGTTGGACACA 59.560 45.455 12.58 0.00 33.40 3.72
7538 9637 3.073798 TCCATGGTACTTGTTGGACACAT 59.926 43.478 12.58 0.00 34.43 3.21
7539 9638 3.826157 CCATGGTACTTGTTGGACACATT 59.174 43.478 2.57 0.00 34.43 2.71
7540 9639 4.082787 CCATGGTACTTGTTGGACACATTC 60.083 45.833 2.57 0.00 34.43 2.67
7541 9640 4.431416 TGGTACTTGTTGGACACATTCT 57.569 40.909 0.00 0.00 34.43 2.40
7542 9641 5.554437 TGGTACTTGTTGGACACATTCTA 57.446 39.130 0.00 0.00 34.43 2.10
7543 9642 5.931294 TGGTACTTGTTGGACACATTCTAA 58.069 37.500 0.00 0.00 34.43 2.10
7544 9643 6.539173 TGGTACTTGTTGGACACATTCTAAT 58.461 36.000 0.00 0.00 34.43 1.73
7545 9644 7.681679 TGGTACTTGTTGGACACATTCTAATA 58.318 34.615 0.00 0.00 34.43 0.98
7546 9645 8.158132 TGGTACTTGTTGGACACATTCTAATAA 58.842 33.333 0.00 0.00 34.43 1.40
7547 9646 9.174166 GGTACTTGTTGGACACATTCTAATAAT 57.826 33.333 0.00 0.00 34.43 1.28
7552 9651 8.165239 TGTTGGACACATTCTAATAATATGGC 57.835 34.615 0.00 0.00 0.00 4.40
7553 9652 7.230510 TGTTGGACACATTCTAATAATATGGCC 59.769 37.037 0.00 0.00 0.00 5.36
7554 9653 5.937540 TGGACACATTCTAATAATATGGCCG 59.062 40.000 0.00 0.00 0.00 6.13
7555 9654 5.163754 GGACACATTCTAATAATATGGCCGC 60.164 44.000 0.00 0.00 0.00 6.53
7556 9655 4.391830 ACACATTCTAATAATATGGCCGCG 59.608 41.667 0.00 0.00 0.00 6.46
7557 9656 4.391830 CACATTCTAATAATATGGCCGCGT 59.608 41.667 4.92 0.00 0.00 6.01
7558 9657 4.391830 ACATTCTAATAATATGGCCGCGTG 59.608 41.667 4.92 0.00 0.00 5.34
7559 9658 2.343101 TCTAATAATATGGCCGCGTGC 58.657 47.619 4.92 8.33 40.16 5.34
7560 9659 2.073056 CTAATAATATGGCCGCGTGCA 58.927 47.619 18.87 7.72 43.89 4.57
7561 9660 1.533625 AATAATATGGCCGCGTGCAT 58.466 45.000 18.87 13.05 43.89 3.96
7562 9661 1.086696 ATAATATGGCCGCGTGCATC 58.913 50.000 18.87 5.62 43.89 3.91
7563 9662 0.034756 TAATATGGCCGCGTGCATCT 59.965 50.000 18.87 7.25 43.89 2.90
7564 9663 0.819259 AATATGGCCGCGTGCATCTT 60.819 50.000 18.87 8.48 43.89 2.40
7565 9664 0.819259 ATATGGCCGCGTGCATCTTT 60.819 50.000 18.87 3.94 43.89 2.52
7566 9665 1.436195 TATGGCCGCGTGCATCTTTC 61.436 55.000 18.87 3.79 43.89 2.62
7567 9666 3.430862 GGCCGCGTGCATCTTTCA 61.431 61.111 18.87 0.00 43.89 2.69
7568 9667 2.099062 GCCGCGTGCATCTTTCAG 59.901 61.111 13.61 0.00 40.77 3.02
7569 9668 2.390599 GCCGCGTGCATCTTTCAGA 61.391 57.895 13.61 0.00 40.77 3.27
7570 9669 1.709147 GCCGCGTGCATCTTTCAGAT 61.709 55.000 13.61 0.00 40.77 2.90
7579 9678 1.948145 CATCTTTCAGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.69 5.19
7580 9679 0.107993 TCTTTCAGATGCAGAGGCCG 60.108 55.000 0.00 0.00 40.13 6.13
7581 9680 1.078214 TTTCAGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 40.13 6.13
7582 9681 2.541547 TTTCAGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 40.13 5.73
7583 9682 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
7586 9685 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
7588 9687 3.489513 GCAGAGGCCGGGGGTAAT 61.490 66.667 2.18 0.00 0.00 1.89
7589 9688 2.829592 CAGAGGCCGGGGGTAATC 59.170 66.667 2.18 0.00 0.00 1.75
7590 9689 2.447959 AGAGGCCGGGGGTAATCC 60.448 66.667 2.18 0.00 0.00 3.01
7591 9690 2.447959 GAGGCCGGGGGTAATCCT 60.448 66.667 2.18 0.00 35.33 3.24
7592 9691 2.043941 AGGCCGGGGGTAATCCTT 59.956 61.111 2.18 0.00 35.33 3.36
7593 9692 2.053259 GAGGCCGGGGGTAATCCTTC 62.053 65.000 2.18 0.00 35.33 3.46
7594 9693 2.076803 GGCCGGGGGTAATCCTTCT 61.077 63.158 2.18 0.00 35.33 2.85
7595 9694 1.642513 GGCCGGGGGTAATCCTTCTT 61.643 60.000 2.18 0.00 35.33 2.52
7596 9695 0.257905 GCCGGGGGTAATCCTTCTTT 59.742 55.000 2.18 0.00 35.33 2.52
7597 9696 1.341679 GCCGGGGGTAATCCTTCTTTT 60.342 52.381 2.18 0.00 35.33 2.27
7598 9697 2.651455 CCGGGGGTAATCCTTCTTTTC 58.349 52.381 0.00 0.00 35.33 2.29
7599 9698 2.241430 CCGGGGGTAATCCTTCTTTTCT 59.759 50.000 0.00 0.00 35.33 2.52
7600 9699 3.457012 CCGGGGGTAATCCTTCTTTTCTA 59.543 47.826 0.00 0.00 35.33 2.10
7601 9700 4.080186 CCGGGGGTAATCCTTCTTTTCTAA 60.080 45.833 0.00 0.00 35.33 2.10
7602 9701 5.503002 CGGGGGTAATCCTTCTTTTCTAAA 58.497 41.667 0.00 0.00 35.33 1.85
7603 9702 5.947566 CGGGGGTAATCCTTCTTTTCTAAAA 59.052 40.000 0.00 0.00 35.33 1.52
7604 9703 6.434965 CGGGGGTAATCCTTCTTTTCTAAAAA 59.565 38.462 0.00 0.00 35.33 1.94
7771 9906 5.337330 CGTACCTCTCCACTAATCCTTGTTT 60.337 44.000 0.00 0.00 0.00 2.83
7789 9924 5.895636 TGTTTCATGCGAGGACAAAATAT 57.104 34.783 0.00 0.00 0.00 1.28
7790 9925 6.993786 TGTTTCATGCGAGGACAAAATATA 57.006 33.333 0.00 0.00 0.00 0.86
7791 9926 6.781138 TGTTTCATGCGAGGACAAAATATAC 58.219 36.000 0.00 0.00 0.00 1.47
7792 9927 5.651172 TTCATGCGAGGACAAAATATACG 57.349 39.130 0.00 0.00 0.00 3.06
7795 9930 6.452242 TCATGCGAGGACAAAATATACGTAT 58.548 36.000 13.54 13.54 0.00 3.06
7800 9935 8.136800 TGCGAGGACAAAATATACGTATTAAGA 58.863 33.333 14.33 0.00 30.42 2.10
7846 9981 2.884639 GGGTGCACAAAAGCTTCTAGAA 59.115 45.455 20.43 4.81 34.99 2.10
7847 9982 3.317993 GGGTGCACAAAAGCTTCTAGAAA 59.682 43.478 20.43 0.00 34.99 2.52
7859 9994 6.992063 AGCTTCTAGAAATGTGGTATGTTG 57.008 37.500 6.63 0.00 0.00 3.33
7866 10009 4.042809 AGAAATGTGGTATGTTGGGAGTCA 59.957 41.667 0.00 0.00 0.00 3.41
7903 10046 2.989840 CTGGAGACATTTCGACACAGTC 59.010 50.000 0.00 0.00 41.51 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.295719 TGGAGTAAAATTAGAGGGAGTCAC 57.704 41.667 0.00 0.00 0.00 3.67
224 226 2.743664 CCTTTCGTGCTCATCATCACAA 59.256 45.455 0.00 0.00 33.03 3.33
251 253 8.206600 GCATTTTAAAATCCAAACAAATTTGCG 58.793 29.630 18.12 6.95 43.38 4.85
260 262 7.330946 GGTGGAGTAGCATTTTAAAATCCAAAC 59.669 37.037 16.50 8.92 0.00 2.93
261 263 7.015682 TGGTGGAGTAGCATTTTAAAATCCAAA 59.984 33.333 16.50 8.53 0.00 3.28
262 264 6.495181 TGGTGGAGTAGCATTTTAAAATCCAA 59.505 34.615 16.50 4.14 0.00 3.53
263 265 6.013379 TGGTGGAGTAGCATTTTAAAATCCA 58.987 36.000 10.53 11.70 0.00 3.41
264 266 6.405842 CCTGGTGGAGTAGCATTTTAAAATCC 60.406 42.308 10.53 9.34 35.99 3.01
265 267 6.564328 CCTGGTGGAGTAGCATTTTAAAATC 58.436 40.000 10.53 6.40 35.99 2.17
266 268 5.105351 GCCTGGTGGAGTAGCATTTTAAAAT 60.105 40.000 7.64 7.64 35.99 1.82
267 269 4.219725 GCCTGGTGGAGTAGCATTTTAAAA 59.780 41.667 2.51 2.51 35.99 1.52
268 270 3.761752 GCCTGGTGGAGTAGCATTTTAAA 59.238 43.478 0.00 0.00 35.99 1.52
270 272 2.679639 CGCCTGGTGGAGTAGCATTTTA 60.680 50.000 0.00 0.00 35.99 1.52
271 273 1.839424 GCCTGGTGGAGTAGCATTTT 58.161 50.000 0.00 0.00 35.99 1.82
272 274 0.392998 CGCCTGGTGGAGTAGCATTT 60.393 55.000 0.00 0.00 35.99 2.32
273 275 1.221840 CGCCTGGTGGAGTAGCATT 59.778 57.895 0.00 0.00 35.99 3.56
274 276 1.961180 GACGCCTGGTGGAGTAGCAT 61.961 60.000 12.58 0.00 46.35 3.79
275 277 2.603473 ACGCCTGGTGGAGTAGCA 60.603 61.111 12.58 0.00 44.56 3.49
276 278 2.184579 GACGCCTGGTGGAGTAGC 59.815 66.667 12.58 0.00 46.35 3.58
277 279 1.592400 TTCGACGCCTGGTGGAGTAG 61.592 60.000 12.58 0.56 46.35 2.57
278 280 1.604308 TTCGACGCCTGGTGGAGTA 60.604 57.895 12.58 0.00 46.35 2.59
280 282 2.432628 GTTCGACGCCTGGTGGAG 60.433 66.667 12.58 5.09 34.69 3.86
281 283 3.998672 GGTTCGACGCCTGGTGGA 61.999 66.667 12.58 0.00 34.57 4.02
282 284 4.003788 AGGTTCGACGCCTGGTGG 62.004 66.667 12.58 0.00 34.56 4.61
345 351 2.432628 GTCGTTGTCGAGGGCCAG 60.433 66.667 6.18 0.00 46.96 4.85
358 364 2.012902 GAATCGGATGGGACGGTCGT 62.013 60.000 1.43 0.00 0.00 4.34
368 374 3.503748 GGCCAGGATTAAAGAATCGGATG 59.496 47.826 0.00 0.00 42.20 3.51
369 375 3.498661 GGGCCAGGATTAAAGAATCGGAT 60.499 47.826 4.39 0.00 42.20 4.18
415 421 4.202223 GGAAGAATTCTACGGCCATCTGTA 60.202 45.833 8.75 0.00 46.56 2.74
428 434 6.825721 AGATTGCGTTATCTTGGAAGAATTCT 59.174 34.615 0.88 0.88 37.10 2.40
443 465 5.092554 TCCCAATGTCTAAGATTGCGTTA 57.907 39.130 0.00 0.00 30.66 3.18
475 497 7.090808 GGAAGATGATTTTTCTTTTAAGCGGT 58.909 34.615 0.00 0.00 33.65 5.68
478 500 8.929746 CAAGGGAAGATGATTTTTCTTTTAAGC 58.070 33.333 0.00 0.00 33.65 3.09
479 501 9.987272 ACAAGGGAAGATGATTTTTCTTTTAAG 57.013 29.630 0.00 0.00 33.65 1.85
481 503 9.367160 AGACAAGGGAAGATGATTTTTCTTTTA 57.633 29.630 0.00 0.00 33.65 1.52
486 508 5.184671 AGCAGACAAGGGAAGATGATTTTTC 59.815 40.000 0.00 0.00 0.00 2.29
487 509 5.047519 CAGCAGACAAGGGAAGATGATTTTT 60.048 40.000 0.00 0.00 0.00 1.94
488 510 4.461781 CAGCAGACAAGGGAAGATGATTTT 59.538 41.667 0.00 0.00 0.00 1.82
490 512 3.618351 CAGCAGACAAGGGAAGATGATT 58.382 45.455 0.00 0.00 0.00 2.57
491 513 2.683152 GCAGCAGACAAGGGAAGATGAT 60.683 50.000 0.00 0.00 0.00 2.45
492 514 1.339438 GCAGCAGACAAGGGAAGATGA 60.339 52.381 0.00 0.00 0.00 2.92
493 515 1.093159 GCAGCAGACAAGGGAAGATG 58.907 55.000 0.00 0.00 0.00 2.90
547 569 3.088532 AGGACAACACAGCTAGAGAGAG 58.911 50.000 0.00 0.00 0.00 3.20
646 674 1.758906 GGAGAAGACGAGGGGAGGG 60.759 68.421 0.00 0.00 0.00 4.30
688 748 2.083774 CTGCCAATTTCTCTTACGCCA 58.916 47.619 0.00 0.00 0.00 5.69
697 757 2.019984 GATTCGCCTCTGCCAATTTCT 58.980 47.619 0.00 0.00 27.75 2.52
760 820 0.946221 AGAGGAAACTTGCGTCGCTG 60.946 55.000 19.50 13.42 44.43 5.18
795 855 2.479656 GCAGAGACAGAAAACAGCTCAG 59.520 50.000 0.00 0.00 0.00 3.35
855 1256 3.756727 GCAGCAGAGCAAAGCCCC 61.757 66.667 0.00 0.00 0.00 5.80
856 1257 3.756727 GGCAGCAGAGCAAAGCCC 61.757 66.667 8.35 0.00 37.31 5.19
993 1394 1.065491 TCCATCTCCCACATTTCCACG 60.065 52.381 0.00 0.00 0.00 4.94
1139 1541 1.068352 AACCCCAAGAGCTCAACCCT 61.068 55.000 17.77 0.00 0.00 4.34
1228 1630 2.136878 CGGATCCTCCTCCACCCTG 61.137 68.421 10.75 0.00 34.78 4.45
1347 1750 6.889722 TGAGGAGAAGAAAACAAAGAGGAAAA 59.110 34.615 0.00 0.00 0.00 2.29
1410 1819 4.363991 AACAGAGGATGAACTGAAAGCT 57.636 40.909 0.00 0.00 37.60 3.74
1411 1820 6.374578 GTTAAACAGAGGATGAACTGAAAGC 58.625 40.000 0.00 0.00 37.60 3.51
1412 1821 6.347725 CCGTTAAACAGAGGATGAACTGAAAG 60.348 42.308 0.00 0.00 42.29 2.62
1413 1822 5.468746 CCGTTAAACAGAGGATGAACTGAAA 59.531 40.000 0.00 0.00 37.54 2.69
1415 1824 4.562757 CCCGTTAAACAGAGGATGAACTGA 60.563 45.833 0.00 0.00 37.54 3.41
1425 1834 3.396260 TGGAAGACCCGTTAAACAGAG 57.604 47.619 0.00 0.00 37.93 3.35
1530 1944 5.612351 ACTGTGAAGGAGAAAACTAGGAAC 58.388 41.667 0.00 0.00 0.00 3.62
1556 1970 4.616181 ACTCAAGAAAGTCAAACAACGG 57.384 40.909 0.00 0.00 0.00 4.44
1560 1974 8.342634 GCATTTAGTACTCAAGAAAGTCAAACA 58.657 33.333 0.00 0.00 0.00 2.83
1651 2065 5.069781 AGCCTCTATGCTTAAGTCTACCTTG 59.930 44.000 4.02 0.00 38.85 3.61
1736 2158 9.315525 GGAGTACTAATTTTTCTAACTGCTAGG 57.684 37.037 0.00 0.00 0.00 3.02
1859 2290 9.406113 GGAGTACTAACTTGAGGAAAGACTATA 57.594 37.037 0.00 0.00 39.38 1.31
1860 2291 8.117312 AGGAGTACTAACTTGAGGAAAGACTAT 58.883 37.037 0.00 0.00 39.38 2.12
1861 2292 7.468496 AGGAGTACTAACTTGAGGAAAGACTA 58.532 38.462 0.00 0.00 39.38 2.59
1862 2293 6.316513 AGGAGTACTAACTTGAGGAAAGACT 58.683 40.000 0.00 0.00 39.38 3.24
1863 2294 6.593268 AGGAGTACTAACTTGAGGAAAGAC 57.407 41.667 0.00 0.00 39.38 3.01
1864 2295 8.716674 TTTAGGAGTACTAACTTGAGGAAAGA 57.283 34.615 0.00 0.00 41.24 2.52
1865 2296 9.945904 ATTTTAGGAGTACTAACTTGAGGAAAG 57.054 33.333 0.00 0.00 41.24 2.62
1897 2338 8.511604 AAAATCCTTGTGAGTTCCTACATATG 57.488 34.615 0.00 0.00 29.42 1.78
1901 2359 8.792633 CAATAAAAATCCTTGTGAGTTCCTACA 58.207 33.333 0.00 0.00 29.42 2.74
1903 2361 7.093945 GGCAATAAAAATCCTTGTGAGTTCCTA 60.094 37.037 0.00 0.00 29.42 2.94
1906 2364 6.691508 AGGCAATAAAAATCCTTGTGAGTTC 58.308 36.000 0.00 0.00 29.42 3.01
1912 2370 8.593945 TCAAGATAGGCAATAAAAATCCTTGT 57.406 30.769 0.00 0.00 0.00 3.16
1924 2387 7.125391 TCCTTGGTAAATTCAAGATAGGCAAT 58.875 34.615 6.88 0.00 42.94 3.56
1946 2409 3.632145 GGGAATTTGCGAACATGTATCCT 59.368 43.478 0.00 0.00 0.00 3.24
1951 2414 2.513753 TCTGGGAATTTGCGAACATGT 58.486 42.857 0.00 0.00 0.00 3.21
2015 2479 9.132521 CAGATTTCCAATTGTGTTAAAGCTTAG 57.867 33.333 0.00 0.00 27.84 2.18
2016 2480 8.087750 CCAGATTTCCAATTGTGTTAAAGCTTA 58.912 33.333 0.00 0.00 27.84 3.09
2032 2496 9.667107 CACTTAGTTCTAATAACCAGATTTCCA 57.333 33.333 0.00 0.00 0.00 3.53
2033 2497 9.668497 ACACTTAGTTCTAATAACCAGATTTCC 57.332 33.333 0.00 0.00 0.00 3.13
2072 2536 3.352648 AGTTGTAGCCACTTGTTTGTGT 58.647 40.909 0.00 0.00 36.30 3.72
2076 2540 6.131544 CAACTTAGTTGTAGCCACTTGTTT 57.868 37.500 16.22 0.00 38.56 2.83
2091 2555 5.978814 AGAAGCCGATCATAACAACTTAGT 58.021 37.500 0.00 0.00 0.00 2.24
2107 2571 1.449246 CCAGCAGGAGAAGAAGCCG 60.449 63.158 0.00 0.00 36.89 5.52
2108 2572 0.905357 TACCAGCAGGAGAAGAAGCC 59.095 55.000 0.35 0.00 38.69 4.35
2110 2574 4.161189 TGAGAATACCAGCAGGAGAAGAAG 59.839 45.833 0.35 0.00 38.69 2.85
2118 2582 5.183713 TCACAAAATTGAGAATACCAGCAGG 59.816 40.000 0.00 0.00 42.21 4.85
2143 2607 5.064707 CACTTTATAGGTCAACAATCCCACG 59.935 44.000 0.00 0.00 0.00 4.94
2152 2616 7.116519 GTCAACAGTCTCACTTTATAGGTCAAC 59.883 40.741 0.00 0.00 0.00 3.18
2177 2641 6.101150 TGGACCTTCAATGCTATGGTATAAGT 59.899 38.462 0.00 0.00 0.00 2.24
2185 3551 5.127519 TCCATTTTGGACCTTCAATGCTATG 59.872 40.000 0.00 0.00 42.67 2.23
2189 3555 3.368739 CCTCCATTTTGGACCTTCAATGC 60.369 47.826 0.00 0.00 42.67 3.56
2270 3637 5.064452 GCTGAGTACAAGATTCTGTTGATGG 59.936 44.000 0.00 0.00 0.00 3.51
2283 3650 9.019656 AGTGATCTTATATAGGCTGAGTACAAG 57.980 37.037 0.00 0.00 0.00 3.16
2350 3717 3.007635 GGAGGTAAAATCTTGGACACGG 58.992 50.000 0.00 0.00 0.00 4.94
2484 3862 9.586435 AAATTTTCTAGTGTTCCTTCTTGTTTG 57.414 29.630 0.00 0.00 0.00 2.93
2606 3985 6.033966 CACGCTTAACTTTGGAGTTCTTTTT 58.966 36.000 0.00 0.00 44.75 1.94
2607 3986 5.578776 CACGCTTAACTTTGGAGTTCTTTT 58.421 37.500 0.00 0.00 44.75 2.27
2655 4034 2.047560 CTTCCCGGTCGTTCACCC 60.048 66.667 0.00 0.00 43.31 4.61
2656 4035 1.070275 AACTTCCCGGTCGTTCACC 59.930 57.895 0.00 0.00 42.69 4.02
2659 4038 0.947660 GACCAACTTCCCGGTCGTTC 60.948 60.000 0.00 0.00 42.19 3.95
2660 4039 1.070275 GACCAACTTCCCGGTCGTT 59.930 57.895 0.00 0.00 42.19 3.85
2661 4040 2.739132 GACCAACTTCCCGGTCGT 59.261 61.111 0.00 0.00 42.19 4.34
2663 4042 2.350134 GGGACCAACTTCCCGGTC 59.650 66.667 0.00 0.00 46.24 4.79
2669 4048 2.671963 GCACCCGGGACCAACTTC 60.672 66.667 32.02 2.31 0.00 3.01
2670 4049 4.636435 CGCACCCGGGACCAACTT 62.636 66.667 32.02 0.00 0.00 2.66
2679 4058 4.758251 TCACTCATGCGCACCCGG 62.758 66.667 14.90 6.05 34.32 5.73
2680 4059 3.190849 CTCACTCATGCGCACCCG 61.191 66.667 14.90 6.12 37.57 5.28
2682 4061 2.103042 GTCCTCACTCATGCGCACC 61.103 63.158 14.90 0.00 0.00 5.01
2683 4062 0.950555 TTGTCCTCACTCATGCGCAC 60.951 55.000 14.90 0.00 0.00 5.34
2684 4063 0.250252 TTTGTCCTCACTCATGCGCA 60.250 50.000 14.96 14.96 0.00 6.09
2685 4064 0.445436 CTTTGTCCTCACTCATGCGC 59.555 55.000 0.00 0.00 0.00 6.09
2686 4065 1.462283 CACTTTGTCCTCACTCATGCG 59.538 52.381 0.00 0.00 0.00 4.73
2687 4066 1.198637 GCACTTTGTCCTCACTCATGC 59.801 52.381 0.00 0.00 0.00 4.06
2688 4067 1.462283 CGCACTTTGTCCTCACTCATG 59.538 52.381 0.00 0.00 0.00 3.07
2689 4068 1.070758 ACGCACTTTGTCCTCACTCAT 59.929 47.619 0.00 0.00 0.00 2.90
2690 4069 0.464036 ACGCACTTTGTCCTCACTCA 59.536 50.000 0.00 0.00 0.00 3.41
2691 4070 2.030185 TCTACGCACTTTGTCCTCACTC 60.030 50.000 0.00 0.00 0.00 3.51
2692 4071 1.961394 TCTACGCACTTTGTCCTCACT 59.039 47.619 0.00 0.00 0.00 3.41
2693 4072 2.433868 TCTACGCACTTTGTCCTCAC 57.566 50.000 0.00 0.00 0.00 3.51
2694 4073 3.462483 TTTCTACGCACTTTGTCCTCA 57.538 42.857 0.00 0.00 0.00 3.86
2695 4074 4.056050 TCTTTTCTACGCACTTTGTCCTC 58.944 43.478 0.00 0.00 0.00 3.71
2696 4075 3.808174 GTCTTTTCTACGCACTTTGTCCT 59.192 43.478 0.00 0.00 0.00 3.85
2697 4076 3.808174 AGTCTTTTCTACGCACTTTGTCC 59.192 43.478 0.00 0.00 0.00 4.02
2698 4077 5.690857 ACTAGTCTTTTCTACGCACTTTGTC 59.309 40.000 0.00 0.00 0.00 3.18
2699 4078 5.462398 CACTAGTCTTTTCTACGCACTTTGT 59.538 40.000 0.00 0.00 0.00 2.83
2700 4079 5.462398 ACACTAGTCTTTTCTACGCACTTTG 59.538 40.000 0.00 0.00 0.00 2.77
2701 4080 5.598769 ACACTAGTCTTTTCTACGCACTTT 58.401 37.500 0.00 0.00 0.00 2.66
2702 4081 5.197682 ACACTAGTCTTTTCTACGCACTT 57.802 39.130 0.00 0.00 0.00 3.16
2703 4082 4.850347 ACACTAGTCTTTTCTACGCACT 57.150 40.909 0.00 0.00 0.00 4.40
2704 4083 4.150098 CCAACACTAGTCTTTTCTACGCAC 59.850 45.833 0.00 0.00 0.00 5.34
2705 4084 4.202182 ACCAACACTAGTCTTTTCTACGCA 60.202 41.667 0.00 0.00 0.00 5.24
2706 4085 4.304939 ACCAACACTAGTCTTTTCTACGC 58.695 43.478 0.00 0.00 0.00 4.42
2707 4086 7.063074 CCATAACCAACACTAGTCTTTTCTACG 59.937 40.741 0.00 0.00 0.00 3.51
2708 4087 7.333672 CCCATAACCAACACTAGTCTTTTCTAC 59.666 40.741 0.00 0.00 0.00 2.59
2709 4088 7.391620 CCCATAACCAACACTAGTCTTTTCTA 58.608 38.462 0.00 0.00 0.00 2.10
2710 4089 6.238648 CCCATAACCAACACTAGTCTTTTCT 58.761 40.000 0.00 0.00 0.00 2.52
2711 4090 5.414765 CCCCATAACCAACACTAGTCTTTTC 59.585 44.000 0.00 0.00 0.00 2.29
2712 4091 5.321927 CCCCATAACCAACACTAGTCTTTT 58.678 41.667 0.00 0.00 0.00 2.27
2713 4092 4.809691 GCCCCATAACCAACACTAGTCTTT 60.810 45.833 0.00 0.00 0.00 2.52
2714 4093 3.308188 GCCCCATAACCAACACTAGTCTT 60.308 47.826 0.00 0.00 0.00 3.01
2715 4094 2.238898 GCCCCATAACCAACACTAGTCT 59.761 50.000 0.00 0.00 0.00 3.24
2716 4095 2.640184 GCCCCATAACCAACACTAGTC 58.360 52.381 0.00 0.00 0.00 2.59
2717 4096 1.283905 GGCCCCATAACCAACACTAGT 59.716 52.381 0.00 0.00 0.00 2.57
2718 4097 1.283613 TGGCCCCATAACCAACACTAG 59.716 52.381 0.00 0.00 31.46 2.57
2719 4098 1.283613 CTGGCCCCATAACCAACACTA 59.716 52.381 0.00 0.00 34.96 2.74
2720 4099 0.039618 CTGGCCCCATAACCAACACT 59.960 55.000 0.00 0.00 34.96 3.55
2721 4100 0.251608 ACTGGCCCCATAACCAACAC 60.252 55.000 0.00 0.00 34.96 3.32
2722 4101 0.039035 GACTGGCCCCATAACCAACA 59.961 55.000 0.00 0.00 34.96 3.33
2723 4102 0.331616 AGACTGGCCCCATAACCAAC 59.668 55.000 0.00 0.00 34.96 3.77
2724 4103 1.080638 AAGACTGGCCCCATAACCAA 58.919 50.000 0.00 0.00 34.96 3.67
2725 4104 0.331278 CAAGACTGGCCCCATAACCA 59.669 55.000 0.00 0.00 0.00 3.67
2726 4105 0.623723 TCAAGACTGGCCCCATAACC 59.376 55.000 0.00 0.00 0.00 2.85
2727 4106 2.576615 GATCAAGACTGGCCCCATAAC 58.423 52.381 0.00 0.00 0.00 1.89
2728 4107 1.494721 GGATCAAGACTGGCCCCATAA 59.505 52.381 0.00 0.00 0.00 1.90
2729 4108 1.140312 GGATCAAGACTGGCCCCATA 58.860 55.000 0.00 0.00 0.00 2.74
2730 4109 1.649271 GGGATCAAGACTGGCCCCAT 61.649 60.000 0.00 0.00 35.73 4.00
2731 4110 2.308722 GGGATCAAGACTGGCCCCA 61.309 63.158 0.00 0.00 35.73 4.96
2732 4111 2.597903 GGGATCAAGACTGGCCCC 59.402 66.667 0.00 0.00 33.70 5.80
2733 4112 2.190578 CGGGATCAAGACTGGCCC 59.809 66.667 0.00 0.00 35.42 5.80
2734 4113 2.514824 GCGGGATCAAGACTGGCC 60.515 66.667 0.00 0.00 0.00 5.36
2735 4114 2.514824 GGCGGGATCAAGACTGGC 60.515 66.667 0.00 0.00 0.00 4.85
2736 4115 1.153289 CTGGCGGGATCAAGACTGG 60.153 63.158 0.00 0.00 0.00 4.00
2737 4116 1.153289 CCTGGCGGGATCAAGACTG 60.153 63.158 6.48 0.00 37.23 3.51
2738 4117 3.036429 GCCTGGCGGGATCAAGACT 62.036 63.158 18.84 0.00 37.23 3.24
2739 4118 2.514824 GCCTGGCGGGATCAAGAC 60.515 66.667 18.84 0.00 37.23 3.01
2750 4129 2.746277 CACCCTGTTACGCCTGGC 60.746 66.667 9.11 9.11 0.00 4.85
2751 4130 0.322322 TAACACCCTGTTACGCCTGG 59.678 55.000 0.00 0.00 41.45 4.45
2752 4131 3.919163 TAACACCCTGTTACGCCTG 57.081 52.632 0.00 0.00 41.45 4.85
2758 4137 2.841215 GTGCACTGTAACACCCTGTTA 58.159 47.619 10.32 0.00 41.45 2.41
2759 4138 1.675552 GTGCACTGTAACACCCTGTT 58.324 50.000 10.32 0.00 43.88 3.16
2760 4139 3.396951 GTGCACTGTAACACCCTGT 57.603 52.632 10.32 0.00 0.00 4.00
2765 4144 3.053831 ACATAGGGTGCACTGTAACAC 57.946 47.619 17.98 0.00 36.03 3.32
2766 4145 3.780804 AACATAGGGTGCACTGTAACA 57.219 42.857 17.98 0.00 0.00 2.41
2767 4146 6.349033 CCTTAAAACATAGGGTGCACTGTAAC 60.349 42.308 17.98 0.00 0.00 2.50
2768 4147 5.708230 CCTTAAAACATAGGGTGCACTGTAA 59.292 40.000 17.98 3.93 0.00 2.41
2769 4148 5.250200 CCTTAAAACATAGGGTGCACTGTA 58.750 41.667 17.98 8.93 0.00 2.74
2770 4149 4.079253 CCTTAAAACATAGGGTGCACTGT 58.921 43.478 17.98 10.32 0.00 3.55
2771 4150 3.119495 GCCTTAAAACATAGGGTGCACTG 60.119 47.826 17.98 9.61 31.95 3.66
2772 4151 3.089284 GCCTTAAAACATAGGGTGCACT 58.911 45.455 17.98 0.00 31.95 4.40
2773 4152 2.823154 TGCCTTAAAACATAGGGTGCAC 59.177 45.455 8.80 8.80 31.95 4.57
2774 4153 3.162147 TGCCTTAAAACATAGGGTGCA 57.838 42.857 0.00 0.00 31.95 4.57
2775 4154 3.737972 GCATGCCTTAAAACATAGGGTGC 60.738 47.826 6.36 0.00 31.95 5.01
2776 4155 3.181476 GGCATGCCTTAAAACATAGGGTG 60.181 47.826 29.98 0.00 31.95 4.61
2777 4156 3.031013 GGCATGCCTTAAAACATAGGGT 58.969 45.455 29.98 0.00 31.95 4.34
2778 4157 2.034558 CGGCATGCCTTAAAACATAGGG 59.965 50.000 33.07 9.99 31.95 3.53
2815 4194 1.558756 AGAAGATGAAGGTGGAGGCAG 59.441 52.381 0.00 0.00 0.00 4.85
2823 4202 4.458295 CACAATGCTGAAGAAGATGAAGGT 59.542 41.667 0.00 0.00 0.00 3.50
2840 4219 4.154015 TCTTTTCGCTACATGGACACAATG 59.846 41.667 0.00 0.00 0.00 2.82
2842 4221 3.734463 TCTTTTCGCTACATGGACACAA 58.266 40.909 0.00 0.00 0.00 3.33
2843 4222 3.006430 TCTCTTTTCGCTACATGGACACA 59.994 43.478 0.00 0.00 0.00 3.72
2847 4226 4.801330 TTCTCTCTTTTCGCTACATGGA 57.199 40.909 0.00 0.00 0.00 3.41
2854 4233 2.834549 TCTCCCATTCTCTCTTTTCGCT 59.165 45.455 0.00 0.00 0.00 4.93
2857 4236 5.656416 TCTCTCTCTCCCATTCTCTCTTTTC 59.344 44.000 0.00 0.00 0.00 2.29
2867 4246 6.142498 ACAAGTATCATCTCTCTCTCCCATT 58.858 40.000 0.00 0.00 0.00 3.16
2868 4247 5.714863 ACAAGTATCATCTCTCTCTCCCAT 58.285 41.667 0.00 0.00 0.00 4.00
2869 4248 5.136068 ACAAGTATCATCTCTCTCTCCCA 57.864 43.478 0.00 0.00 0.00 4.37
2871 4250 7.106439 TCAAACAAGTATCATCTCTCTCTCC 57.894 40.000 0.00 0.00 0.00 3.71
2872 4251 8.994429 TTTCAAACAAGTATCATCTCTCTCTC 57.006 34.615 0.00 0.00 0.00 3.20
2899 4278 9.399403 GAAGTATGAAAAGAAATGTGACCTTTC 57.601 33.333 5.37 5.37 33.69 2.62
2907 4286 9.220767 GGTCTGTAGAAGTATGAAAAGAAATGT 57.779 33.333 0.00 0.00 0.00 2.71
2916 4295 5.185249 GTGTGAGGGTCTGTAGAAGTATGAA 59.815 44.000 0.00 0.00 0.00 2.57
2927 4306 2.400467 AACTAGGTGTGAGGGTCTGT 57.600 50.000 0.00 0.00 0.00 3.41
2936 4315 6.708949 TCTTAGCTTGGTTAAAACTAGGTGTG 59.291 38.462 0.00 2.34 0.00 3.82
2938 4317 6.708949 TGTCTTAGCTTGGTTAAAACTAGGTG 59.291 38.462 0.00 0.00 0.00 4.00
2954 4333 3.513119 TCAAGAGAGCACATGTCTTAGCT 59.487 43.478 8.04 8.04 39.42 3.32
2962 4341 4.569966 GTGGTAAGATCAAGAGAGCACATG 59.430 45.833 0.00 0.00 38.18 3.21
2998 4377 6.470877 TGTTTCGCTTACAAGAAAATTGTCAC 59.529 34.615 0.00 0.00 37.98 3.67
3002 4381 7.621832 TCATGTTTCGCTTACAAGAAAATTG 57.378 32.000 0.00 0.00 37.98 2.32
3003 4382 9.559958 CTATCATGTTTCGCTTACAAGAAAATT 57.440 29.630 0.00 0.00 37.98 1.82
3081 4460 4.951715 TCCTTCATACGGTAAGCTTCTACA 59.048 41.667 0.00 0.00 0.00 2.74
3082 4461 5.511234 TCCTTCATACGGTAAGCTTCTAC 57.489 43.478 0.00 0.00 0.00 2.59
3089 4480 7.590279 ACAAACATTTTCCTTCATACGGTAAG 58.410 34.615 0.00 0.00 0.00 2.34
3125 4516 9.187996 TGATGAGGTAAATGCTTGATGATTAAA 57.812 29.630 0.00 0.00 0.00 1.52
3180 4571 5.783360 TGAAGGAGAGTCACCATAAACCTTA 59.217 40.000 9.44 0.00 36.76 2.69
3312 4706 4.789012 AGAGTGGTTACCAAATGCAATG 57.211 40.909 5.33 0.00 34.18 2.82
3325 4719 9.574516 AAATACTGAAATAGAACAAGAGTGGTT 57.425 29.630 0.00 0.00 0.00 3.67
3401 4795 6.466885 TTAGGTTCCTGCAAGAGTATAGTC 57.533 41.667 1.12 0.00 34.07 2.59
3609 5003 6.017109 ACAAAGCAGTAACCACTACAGAATTG 60.017 38.462 0.00 0.00 32.21 2.32
3880 5946 4.142730 GGACAAGTGCTTGATTGACAGATC 60.143 45.833 17.62 2.69 42.93 2.75
3902 5968 2.492088 GCCAAAAGCAGTAGGTTAAGGG 59.508 50.000 0.00 0.00 42.97 3.95
3911 5977 9.117449 GAGTATCACAAGTTGCCAAAAGCAGTA 62.117 40.741 1.81 0.00 44.96 2.74
3991 6057 5.129634 TGCAAGAAGACACAACAAGGAATA 58.870 37.500 0.00 0.00 0.00 1.75
4075 6141 4.473196 TGCTTAGGTCCAATATCTCCAACA 59.527 41.667 0.00 0.00 0.00 3.33
4344 6410 6.918569 CCATCATCAGCTCTTTGATTCAAATC 59.081 38.462 12.04 5.45 35.67 2.17
4580 6646 6.382859 TGGTACCAGCTGATGTATTTAAGAGA 59.617 38.462 17.39 0.00 0.00 3.10
4606 6672 7.340999 GGGGAAAGTAAGAAGGCATGTTAATTA 59.659 37.037 0.00 0.00 26.74 1.40
4607 6673 6.154534 GGGGAAAGTAAGAAGGCATGTTAATT 59.845 38.462 0.00 0.00 27.64 1.40
4608 6674 5.656859 GGGGAAAGTAAGAAGGCATGTTAAT 59.343 40.000 0.00 0.00 0.00 1.40
4609 6675 5.014202 GGGGAAAGTAAGAAGGCATGTTAA 58.986 41.667 0.00 0.00 0.00 2.01
5130 7196 0.960861 GCAACTTGGGTACTCCTGCC 60.961 60.000 0.00 0.00 36.20 4.85
5209 7275 4.768968 GGTTCCCTTGTAGACAGTGTAGTA 59.231 45.833 0.00 0.00 0.00 1.82
5247 7313 5.879948 CAGTTGATACAACTGCTATCTCG 57.120 43.478 24.52 6.02 40.80 4.04
5280 7346 3.648339 TGCTTTGACCAATCTTTGCTC 57.352 42.857 0.00 0.00 0.00 4.26
5901 7978 6.548622 AGGTTGGATATGGAATCACAAATGAG 59.451 38.462 0.00 0.00 38.57 2.90
5997 8077 5.163099 TGAAATGACAGGGTTATGGATAGGG 60.163 44.000 0.00 0.00 0.00 3.53
6043 8123 0.106918 AGTTCTCGTTTGGCACCCAA 60.107 50.000 0.00 0.00 42.29 4.12
6222 8310 5.607939 AATCATATGAACTGGACGGTACA 57.392 39.130 9.99 0.00 0.00 2.90
6246 8334 1.688197 ACATGCACACCCCAGAAAAAG 59.312 47.619 0.00 0.00 0.00 2.27
6353 8444 2.027192 TCGGCTATCTGTGAAAAGGCTT 60.027 45.455 0.00 0.00 32.71 4.35
6678 8769 5.396884 GGGTCAAGCAAACAGGATATACTCT 60.397 44.000 0.00 0.00 0.00 3.24
6727 8818 7.661040 TCAACTCGCAAATGATATCTAGATCA 58.339 34.615 8.95 3.20 40.08 2.92
6793 8884 4.808414 TTTAGTGGTGACCTCTCTCATG 57.192 45.455 9.80 0.00 0.00 3.07
6968 9059 5.536554 AAGATGTACAAGATTGCAAGACG 57.463 39.130 4.94 0.00 0.00 4.18
7242 9333 3.837355 ACCAATTGCTGTCTCTTCCTTT 58.163 40.909 0.00 0.00 0.00 3.11
7284 9376 5.395611 AGTACCAGTCTAACAAAGAGGACT 58.604 41.667 0.00 0.00 39.28 3.85
7448 9546 3.459598 CTCTCAAATACCCCCTCCATTCA 59.540 47.826 0.00 0.00 0.00 2.57
7452 9550 1.893315 CCTCTCAAATACCCCCTCCA 58.107 55.000 0.00 0.00 0.00 3.86
7460 9559 7.011857 CCAAGAGAAATAGTGCCTCTCAAATAC 59.988 40.741 0.00 0.00 38.45 1.89
7515 9614 3.117851 TGTGTCCAACAAGTACCATGGAA 60.118 43.478 21.47 0.00 43.21 3.53
7518 9617 4.761739 AGAATGTGTCCAACAAGTACCATG 59.238 41.667 0.00 0.00 43.61 3.66
7519 9618 4.985538 AGAATGTGTCCAACAAGTACCAT 58.014 39.130 0.00 0.00 43.61 3.55
7520 9619 4.431416 AGAATGTGTCCAACAAGTACCA 57.569 40.909 0.00 0.00 43.61 3.25
7521 9620 8.556213 TTATTAGAATGTGTCCAACAAGTACC 57.444 34.615 0.00 0.00 43.61 3.34
7526 9625 8.629158 GCCATATTATTAGAATGTGTCCAACAA 58.371 33.333 0.00 0.00 43.61 2.83
7527 9626 7.230510 GGCCATATTATTAGAATGTGTCCAACA 59.769 37.037 0.00 0.00 44.79 3.33
7528 9627 7.573096 CGGCCATATTATTAGAATGTGTCCAAC 60.573 40.741 2.24 0.00 0.00 3.77
7529 9628 6.429692 CGGCCATATTATTAGAATGTGTCCAA 59.570 38.462 2.24 0.00 0.00 3.53
7530 9629 5.937540 CGGCCATATTATTAGAATGTGTCCA 59.062 40.000 2.24 0.00 0.00 4.02
7531 9630 5.163754 GCGGCCATATTATTAGAATGTGTCC 60.164 44.000 2.24 0.00 0.00 4.02
7532 9631 5.445939 CGCGGCCATATTATTAGAATGTGTC 60.446 44.000 2.24 0.00 0.00 3.67
7533 9632 4.391830 CGCGGCCATATTATTAGAATGTGT 59.608 41.667 2.24 0.00 0.00 3.72
7534 9633 4.391830 ACGCGGCCATATTATTAGAATGTG 59.608 41.667 12.47 0.00 0.00 3.21
7535 9634 4.391830 CACGCGGCCATATTATTAGAATGT 59.608 41.667 12.47 0.00 0.00 2.71
7536 9635 4.727734 GCACGCGGCCATATTATTAGAATG 60.728 45.833 12.47 0.00 36.11 2.67
7537 9636 3.374058 GCACGCGGCCATATTATTAGAAT 59.626 43.478 12.47 0.00 36.11 2.40
7538 9637 2.739913 GCACGCGGCCATATTATTAGAA 59.260 45.455 12.47 0.00 36.11 2.10
7539 9638 2.289133 TGCACGCGGCCATATTATTAGA 60.289 45.455 12.47 0.00 43.89 2.10
7540 9639 2.073056 TGCACGCGGCCATATTATTAG 58.927 47.619 12.47 0.00 43.89 1.73
7541 9640 2.171341 TGCACGCGGCCATATTATTA 57.829 45.000 12.47 0.00 43.89 0.98
7542 9641 1.468520 GATGCACGCGGCCATATTATT 59.531 47.619 12.47 0.00 43.89 1.40
7543 9642 1.086696 GATGCACGCGGCCATATTAT 58.913 50.000 12.47 0.00 43.89 1.28
7544 9643 0.034756 AGATGCACGCGGCCATATTA 59.965 50.000 12.47 0.00 43.89 0.98
7545 9644 0.819259 AAGATGCACGCGGCCATATT 60.819 50.000 12.47 12.87 43.89 1.28
7546 9645 0.819259 AAAGATGCACGCGGCCATAT 60.819 50.000 12.47 6.82 43.89 1.78
7547 9646 1.436195 GAAAGATGCACGCGGCCATA 61.436 55.000 12.47 0.00 43.89 2.74
7548 9647 2.751436 AAAGATGCACGCGGCCAT 60.751 55.556 12.47 12.56 43.89 4.40
7549 9648 3.430862 GAAAGATGCACGCGGCCA 61.431 61.111 12.47 7.32 43.89 5.36
7550 9649 3.386867 CTGAAAGATGCACGCGGCC 62.387 63.158 12.47 0.18 37.87 6.13
7551 9650 2.099062 CTGAAAGATGCACGCGGC 59.901 61.111 12.47 12.14 39.03 6.53
7552 9651 3.874873 TCTGAAAGATGCACGCGG 58.125 55.556 12.47 0.00 38.67 6.46
7562 9661 1.094073 CCGGCCTCTGCATCTGAAAG 61.094 60.000 0.00 0.00 40.13 2.62
7563 9662 1.078214 CCGGCCTCTGCATCTGAAA 60.078 57.895 0.00 0.00 40.13 2.69
7564 9663 2.586245 CCGGCCTCTGCATCTGAA 59.414 61.111 0.00 0.00 40.13 3.02
7565 9664 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
7566 9665 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
7569 9668 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
7571 9670 3.477578 GATTACCCCCGGCCTCTGC 62.478 68.421 0.00 0.00 0.00 4.26
7572 9671 2.819284 GGATTACCCCCGGCCTCTG 61.819 68.421 0.00 0.00 0.00 3.35
7573 9672 2.447959 GGATTACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
7574 9673 2.053259 GAAGGATTACCCCCGGCCTC 62.053 65.000 0.00 0.00 36.73 4.70
7575 9674 2.043941 AAGGATTACCCCCGGCCT 59.956 61.111 0.00 0.00 36.73 5.19
7576 9675 1.642513 AAGAAGGATTACCCCCGGCC 61.643 60.000 0.00 0.00 36.73 6.13
7577 9676 0.257905 AAAGAAGGATTACCCCCGGC 59.742 55.000 0.00 0.00 36.73 6.13
7578 9677 2.241430 AGAAAAGAAGGATTACCCCCGG 59.759 50.000 0.00 0.00 36.73 5.73
7579 9678 3.646736 AGAAAAGAAGGATTACCCCCG 57.353 47.619 0.00 0.00 36.73 5.73
7580 9679 7.786046 TTTTTAGAAAAGAAGGATTACCCCC 57.214 36.000 0.00 0.00 36.73 5.40
7633 9732 2.098607 CAGGACATCCATGCATGTTGTC 59.901 50.000 32.10 32.10 37.11 3.18
7636 9735 2.812836 TCAGGACATCCATGCATGTT 57.187 45.000 24.58 9.60 37.11 2.71
7666 9765 3.495331 TCAGCTTTATGGCCAAGAACAA 58.505 40.909 10.96 0.00 0.00 2.83
7673 9772 5.068987 GGTTTCATATTCAGCTTTATGGCCA 59.931 40.000 8.56 8.56 0.00 5.36
7713 9818 0.033366 GGCACACCCAATTCACCAAC 59.967 55.000 0.00 0.00 0.00 3.77
7771 9906 4.689071 ACGTATATTTTGTCCTCGCATGA 58.311 39.130 0.00 0.00 0.00 3.07
7789 9924 9.961265 CAAAGTGATAGTCCATCTTAATACGTA 57.039 33.333 0.00 0.00 34.46 3.57
7790 9925 8.475639 ACAAAGTGATAGTCCATCTTAATACGT 58.524 33.333 0.00 0.00 34.46 3.57
7791 9926 8.873215 ACAAAGTGATAGTCCATCTTAATACG 57.127 34.615 0.00 0.00 34.46 3.06
7795 9930 7.330946 CGTGAACAAAGTGATAGTCCATCTTAA 59.669 37.037 0.00 0.00 34.46 1.85
7800 9935 5.047306 TCTCGTGAACAAAGTGATAGTCCAT 60.047 40.000 0.00 0.00 0.00 3.41
7805 9940 4.177026 CCCTCTCGTGAACAAAGTGATAG 58.823 47.826 0.00 0.00 0.00 2.08
7819 9954 1.166531 GCTTTTGTGCACCCTCTCGT 61.167 55.000 15.69 0.00 0.00 4.18
7846 9981 3.330701 AGTGACTCCCAACATACCACATT 59.669 43.478 0.00 0.00 0.00 2.71
7847 9982 2.912956 AGTGACTCCCAACATACCACAT 59.087 45.455 0.00 0.00 0.00 3.21
7859 9994 3.050275 GTGCCGCAAGTGACTCCC 61.050 66.667 0.00 0.00 0.00 4.30
7866 10009 4.609018 AGCTGTCGTGCCGCAAGT 62.609 61.111 6.19 0.00 0.00 3.16
7880 10023 1.344438 TGTGTCGAAATGTCTCCAGCT 59.656 47.619 0.00 0.00 0.00 4.24
7881 10024 1.728971 CTGTGTCGAAATGTCTCCAGC 59.271 52.381 0.00 0.00 0.00 4.85
7887 10030 4.989168 AGGTTAAGACTGTGTCGAAATGTC 59.011 41.667 4.20 4.20 37.67 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.